Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000184208	0	genome.wustl.edu	36	22	40420973	40420974	+	Frame_Shift_Ins	INS	-	-	AG			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	40420973	40420974	-	AG	INS	ENSG00000184208	ENST00000356843	human	ensembl	54_36p	+1	known	frame_shift_ins	c.837_838	p.G281fs	0.168:0.233	NULL	NULL	-	no_errors
IGHG3	3502	genome.wustl.edu	36	14	105305233	105305233	+	Silent	SNP	A	A	G			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	105305233	105305233	A	G	SNP	IGHG3	ENST00000390550	human	ensembl	54_36p	-1	known	silent	c.1218	p.C406	1.000	NULL	PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LOC728539	728539	genome.wustl.edu	36	9	66239724	66239724	+	Silent	SNP	C	C	T			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	66239724	66239724	C	T	SNP	LOC728539	XM_001127707	human	genbank	54_36p	+1	model	silent	c.714	p.G238	0.989	NULL	HMMPfam_7tm_1	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060271	115060271	C	A	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.34	p.G12C	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
NR1H4	9971	genome.wustl.edu	36	12	99454480	99454480	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	99454480	99454480	T	A	SNP	NR1H4	NM_005123	human	genbank	54_36p	+1	provisional	nonsense	c.780	p.Y260*	0.966	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
PCDHB15	56121	genome.wustl.edu	36	5	140606645	140606645	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140606645	140606645	G	A	SNP	PCDHB15	NM_018935	human	genbank	54_36p	+1	reviewed	missense	c.1315	p.V439M	0.010	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	HMMPfam_Cadherin_2,superfamily_Cadherin,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
PCM1	5108	genome.wustl.edu	36	8	17861916	17861916	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	17861916	17861916	T	A	SNP	PCM1	NM_006197	human	genbank	54_36p	+1	validated	missense	c.2154	p.N718K	0.711	NULL	PatternScan_MOLYBDOPTERIN_EUK	-	no_errors
MUC4	4585	genome.wustl.edu	36	3	196995678	196995678	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	196995678	196995678	C	T	SNP	MUC4	ENST00000405167	human	ensembl	54_36p	-1	known	missense	c.7168	p.A2390T	0.029	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25316790	25316790	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25316790	25316790	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2207	p.R736H	1.000	HMMPfam_DNA_methylase,superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54781987	54781987	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54781987	54781987	C	G	SNP	ERBB3	NM_001982	human	genbank	54_36p	+1	reviewed	missense	c.3910	p.H1304D	0.159	NULL	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),superfamily_L domain-like	-	no_errors
RAB23	51715	genome.wustl.edu	36	6	57166661	57166661	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	57166661	57166661	T	C	SNP	RAB23	NM_016277	human	genbank	54_36p	-1	reviewed	missense	c.512	p.Q171R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00176	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
PCDHB15	56121	genome.wustl.edu	36	5	140607233	140607233	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140607233	140607233	G	A	SNP	PCDHB15	NM_018935	human	genbank	54_36p	+1	reviewed	missense	c.1903	p.V635M	0.053	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
MDH1B	130752	genome.wustl.edu	36	2	207328068	207328068	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	207328068	207328068	G	A	SNP	MDH1B	NM_001039845	human	genbank	54_36p	-1	validated	missense	c.820	p.R274C	0.067	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_LDH C-terminal domain-like	-	no_errors
ESPNP	284729	genome.wustl.edu	36	1	16906712	16906713	+	Frame_Shift_Ins	INS	-	-	AGCT			TCGA-AB-2824-03B-01W-0728-08	TCGA-AB-2824-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16906712	16906713	-	AGCT	INS	ESPNP	ENST00000270691	human	ensembl	54_36p	-1	known	frame_shift_ins	c.479_478	p.W160fs	1.000:1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_WH2,HMMSmart_SM00246	-	no_start_codon
