Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MUC16	94025	genome.wustl.edu	36	19	8872375	8872375	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8872375	8872375	C	G	SNP	MUC16	NM_024690	human	genbank	54_36p	-1	validated	missense	c.38858	p.G12953A	0.002	superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
CELSR2	1952	genome.wustl.edu	36	1	109614600	109614600	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	109614600	109614600	G	A	SNP	CELSR2	NM_001408	human	genbank	54_36p	+1	reviewed	silent	c.7338	p.L2446	1.000	HMMPfam_7tm_2	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,HMMSmart_TNFR,HMMSmart_LamG,HMMPfam_HRM,HMMSmart_HormR,HMMSmart_EGF_CA,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_SSF57196	-	no_errors
FMNL1	752	genome.wustl.edu	36	17	40674353	40674353	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	40674353	40674353	G	A	SNP	FMNL1	NM_005892	human	genbank	54_36p	+1	reviewed	silent	c.1305	p.Q435	0.542	HMMPfam_Drf_FH3	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors
ARSE	415	genome.wustl.edu	36	X	2863036	2863036	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	2863036	2863036	T	C	SNP	ARSE	NM_000047	human	genbank	54_36p	-1	reviewed	missense	c.1607	p.Q536R	0.000	superfamily_Alkaline_phosphatase_core	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
ATP1A1	476	genome.wustl.edu	36	1	116748118	116748118	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	116748118	116748118	G	T	SNP	ATP1A1	NM_000701	human	genbank	54_36p	+1	reviewed	missense	c.3041	p.G1014V	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
APBA2	321	genome.wustl.edu	36	15	27133533	27133533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	27133533	27133533	C	T	SNP	APBA2	NM_005503	human	genbank	54_36p	+1	reviewed	missense	c.154	p.R52W	0.000	NULL	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID,superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ	-	no_errors
OR10H1	26539	genome.wustl.edu	36	19	15779007	15779007	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	15779007	15779007	C	T	SNP	OR10H1	NM_013940	human	genbank	54_36p	-1	validated	missense	c.841	p.V281I	0.068	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
DGKG	1608	genome.wustl.edu	36	3	187468169	187468169	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	187468169	187468169	C	A	SNP	DGKG	NM_001346	human	genbank	54_36p	-1	reviewed	missense	c.1208	p.R403L	0.716	NULL	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	no_errors
LARP1	23367	genome.wustl.edu	36	5	154159425	154159425	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	154159425	154159425	C	T	SNP	LARP1	NM_033551	human	genbank	54_36p	+1	validated	missense	c.1459	p.P487S	0.477	NULL	"superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00715,HMMPfam_La,PatternScan_CYTOCHROME_B5_1,HMMSmart_SM00684"	-	no_errors
FAT1	2195	genome.wustl.edu	36	4	187762008	187762008	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	187762008	187762008	C	T	SNP	FAT1	NM_005245	human	genbank	54_36p	-1	reviewed	missense	c.10666	p.G3556R	0.861	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_CADHERIN_1,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
PRPF8	10594	genome.wustl.edu	36	17	1512171	1512171	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	1512171	1512171	G	A	SNP	PRPF8	NM_006445	human	genbank	54_36p	-1	reviewed	silent	c.3801	p.L1267	0.981	HMMPfam_U5_2-snRNA_bdg	HMMPfam_Mov34,HMMSmart_SM00232,HMMPfam_PRO8NT,HMMPfam_PROCN,HMMPfam_PROCT,HMMPfam_U6-snRNA_bdg,HMMPfam_U5_2-snRNA_bdg,HMMPfam_RRM_4	-	no_errors
LOC100132863	100132863	genome.wustl.edu	36	9	123322122	123322122	+	RNA	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	123322122	123322122	C	A	SNP	LOC100132863	XR_039604	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
ACCN3	9311	genome.wustl.edu	36	7	150377153	150377153	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	150377153	150377153	G	T	SNP	ACCN3	NM_020321	human	genbank	54_36p	+1	reviewed	missense	c.248	p.R83L	0.837	HMMPfam_ASC	HMMPfam_ASC,PatternScan_ASC	-	no_errors
SERPINF2	5345	genome.wustl.edu	36	17	1604399	1604399	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	1604399	1604399	G	A	SNP	SERPINF2	NM_000934	human	genbank	54_36p	+1	validated	missense	c.1297	p.V433M	0.947	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN	superfamily_Prot_inh_serpin,HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN	-	no_errors
TTC21A	199223	genome.wustl.edu	36	3	39147217	39147217	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	39147217	39147217	G	A	SNP	TTC21A	NM_001105513	human	genbank	54_36p	+1	validated	missense	c.2365	p.A789T	1.000	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
FBN3	84467	genome.wustl.edu	36	19	8092209	8092209	+	Silent	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8092209	8092209	C	A	SNP	FBN3	NM_032447	human	genbank	54_36p	-1	reviewed	silent	c.3144	p.P1048	0.944	PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_ASX_HYDROXYL	HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
C19orf34	255193	genome.wustl.edu	36	19	1904453	1904453	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1904453	1904453	G	A	SNP	C19orf34	ENST00000314315	human	ensembl	54_36p	-1	known	missense	c.347	p.S116L	0.563	NULL	NULL	-	no_start_codon
RNF207	388591	genome.wustl.edu	36	1	6195328	6195328	+	Splice_Site	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6195328	6195328	G	A	SNP	RNF207	NM_207396	human	genbank	54_36p	+1	validated	splice_site	c.1483-1	e14-1	1.000	-	-	-	no_errors
ALKBH1	8846	genome.wustl.edu	36	14	77244047	77244047	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	77244047	77244047	G	A	SNP	ALKBH1	NM_006020	human	genbank	54_36p	-1	reviewed	silent	c.54	p.P18	0.005	NULL	NULL	-	no_errors
DUSP26	78986	genome.wustl.edu	36	8	33574478	33574478	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	33574478	33574478	T	C	SNP	DUSP26	NM_024025	human	genbank	54_36p	-1	provisional	missense	c.98	p.E33G	1.000	NULL	HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
C6orf221	154288	genome.wustl.edu	36	6	74129639	74129639	+	Silent	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	74129639	74129639	T	C	SNP	C6orf221	NM_001017361	human	genbank	54_36p	+1	validated	silent	c.270	p.F90	0.179	NULL	NULL	-	no_errors
MTOR	2475	genome.wustl.edu	36	1	11115814	11115814	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	11115814	11115814	C	A	SNP	FRAP1	NM_004958	human	genbank	54_36p	-1	reviewed	missense	c.5274	p.Q1758H	1.000	HMMPfam_FAT,superfamily_ARM-type_fold	HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_FAT,HMMPfam_FATC,HMMPfam_Rapamycin_bind,superfamily_FRAP_FKBP12_bind,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF48452	-	no_errors
AGFG2	3268	genome.wustl.edu	36	7	99997870	99997870	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	99997870	99997870	G	A	SNP	AGFG2	NM_006076	human	genbank	54_36p	+1	reviewed	silent	c.930	p.Q310	1.000	NULL	HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain,HMMPfam_ArfGap	-	no_errors
COL18A1	80781	genome.wustl.edu	36	21	45712983	45712983	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	45712983	45712983	T	C	SNP	COL18A1	NM_030582	human	genbank	54_36p	+1	reviewed	missense	c.1046	p.V349A	1.000	superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG	HMMPfam_DUF959,superfamily_ConA_like_lec_gl,HMMSmart_TSPN,HMMSmart_LamG,HMMPfam_Collagen,HMMPfam_Endostatin,superfamily_C-type_lectin_fold	-	no_errors
TARBP2	6895	genome.wustl.edu	36	12	52186104	52186104	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	52186104	52186104	G	A	SNP	TARBP2	NM_134323	human	genbank	54_36p	+1	reviewed	missense	c.1006	p.V336M	0.999	superfamily_dsRNA-binding domain-like,HMMSmart_SM00358	superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
MFHAS1	9258	genome.wustl.edu	36	8	8785693	8785693	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	8785693	8785693	C	T	SNP	MFHAS1	NM_004225	human	genbank	54_36p	-1	reviewed	silent	c.2286	p.A762	0.024	NULL	superfamily_L domain-like,HMMSmart_SM00364,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Polo-box domain	-	no_errors
DHH	50846	genome.wustl.edu	36	12	47771354	47771354	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47771354	47771354	T	C	SNP	DHH	NM_021044	human	genbank	54_36p	-1	reviewed	missense	c.389	p.D130G	1.000	HMMPfam_HH_signal,superfamily_Hedgehog_sig_N	HMMPfam_HH_signal,superfamily_Hedgehog_sig_N,HMMPfam_Hint,HMMSmart_HintN,superfamily_SSF51294,HMMSmart_HintC	-	no_errors
MAP3K4	4216	genome.wustl.edu	36	6	161456323	161456323	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	161456323	161456323	A	G	SNP	MAP3K4	NM_005922	human	genbank	54_36p	+1	reviewed	missense	c.4805	p.K1602R	1.000	superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PXT1	222659	genome.wustl.edu	36	6	36467540	36467540	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	36467540	36467540	G	A	SNP	PXT1	NM_152990	human	genbank	54_36p	-1	provisional	silent	c.141	p.N47	0.801	NULL	NULL	-	no_errors
KNTC1	9735	genome.wustl.edu	36	12	121664238	121664238	+	Nonsense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	121664238	121664238	A	T	SNP	KNTC1	NM_014708	human	genbank	54_36p	+1	reviewed	nonsense	c.5854	p.K1952*	1.000	HMMPfam_Rod_C	HMMPfam_Rod_C,PatternScan_BZIP_BASIC	-	no_errors
BOD1L	259282	genome.wustl.edu	36	4	13210385	13210385	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	13210385	13210385	C	T	SNP	BOD1L	NM_148894	human	genbank	54_36p	-1	validated	missense	c.7237	p.V2413I	0.000	NULL	superfamily_SSF81995,HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
RPN2	6185	genome.wustl.edu	36	20	35269114	35269114	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	35269114	35269114	G	A	SNP	RPN2	NM_002951	human	genbank	54_36p	+1	reviewed	missense	c.715	p.A239T	0.966	HMMPfam_Ribophorin_II	HMMPfam_Ribophorin_II	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154785083	154785083	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154785083	154785083	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	missense	c.1907	p.A636V	0.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540	-	no_errors
CDC14A	8556	genome.wustl.edu	36	1	100737253	100737253	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	100737253	100737253	T	G	SNP	CDC14A	NM_033312	human	genbank	54_36p	+1	reviewed	missense	c.1602	p.N534K	0.992	NULL	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00195,HMMSmart_SM00404,HMMPfam_DSPc,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
MAP3K6	9064	genome.wustl.edu	36	1	27559017	27559017	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	27559017	27559017	G	T	SNP	MAP3K6	NM_004672	human	genbank	54_36p	-1	reviewed	missense	c.2238	p.S746R	0.999	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like)	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,superfamily_SAM/Pointed domain	-	no_errors
KIF1C	10749	genome.wustl.edu	36	17	4864040	4864040	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4864040	4864040	A	T	SNP	KIF1C	NM_006612	human	genbank	54_36p	+1	provisional	missense	c.1692	p.E564D	1.000	HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA	HMMPfam_FHA,HMMSmart_FHA,HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SMAD_FHA,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
RASGEF1C	255426	genome.wustl.edu	36	5	179474124	179474124	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	179474124	179474124	C	T	SNP	RASGEF1C	ENST00000274820	human	ensembl	54_36p	-1	known	missense	c.692	p.C231Y	1.000	HMMSmart_SM00147	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF	-	no_errors
PHKG1	5260	genome.wustl.edu	36	7	56116270	56116270	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	56116270	56116270	G	A	SNP	PHKG1	NM_006213	human	genbank	54_36p	-1	reviewed	missense	c.1135	p.L379F	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LRRTM2	26045	genome.wustl.edu	36	5	138237641	138237641	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	138237641	138237641	G	C	SNP	LRRTM2	NM_015564	human	genbank	54_36p	-1	validated	missense	c.508	p.R170G	1.000	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154784837	154784837	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154784837	154784837	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	missense	c.2060	p.T687I	0.930	NULL	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMSmart_IQ,superfamily_SSF52540,HMMPfam_IQ,superfamily_Rho_GAP,HMMSmart_RasGAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMPfam_RasGAP_C	-	no_errors
C14orf102	55051	genome.wustl.edu	36	14	89838974	89838974	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	89838974	89838974	C	T	SNP	C14orf102	NM_017970	human	genbank	54_36p	-1	validated	nonsense	c.1254	p.W418*	1.000	HMMPfam_DUF1740,superfamily_Prenyl_trans	HMMPfam_DUF1740,superfamily_Prenyl_trans	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54777952	54777952	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54777952	54777952	G	-	DEL	ERBB3	NM_001982	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2577	p.P860fs	0.923	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMSmart_SM00261,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	-	no_errors
LILRP2	79166	genome.wustl.edu	36	19	59916407	59916407	+	RNA	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59916407	59916407	C	A	SNP	LILRP2	NR_003061	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.044	-	-	-	pseudogene
APC	324	genome.wustl.edu	36	5	112207330	112207330	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	112207330	112207330	C	T	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	missense	c.8140	p.R2714C	0.002	HMMPfam_EB1_binding	HMMPfam_Arm,HMMSmart_SM00185,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_EB1_binding,HMMPfam_APC_basic,HMMPfam_APC_15aa,superfamily_ARM repeat	-	no_errors
ENSG00000187984	0	genome.wustl.edu	36	2	94883087	94883087	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	94883087	94883087	G	T	SNP	ENSG00000187984	ENST00000338192	human	ensembl	54_36p	-1	known	missense	c.244	p.Q82K	0.106	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00248	-	no_start_codon:no_stop_codon
DHX58	79132	genome.wustl.edu	36	17	37511296	37511296	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37511296	37511296	C	G	SNP	DHX58	NM_024119	human	genbank	54_36p	-1	validated	missense	c.1235	p.S412T	0.716	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540	HMMPfam_Helicase_C,HMMSmart_HELICc,HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
PLA2G3	50487	genome.wustl.edu	36	22	29862700	29862700	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29862700	29862700	C	T	SNP	PLA2G3	NM_015715	human	genbank	54_36p	-1	validated	missense	c.1285	p.A429T	0.561	superfamily_Phospholipase A2 PLA2	superfamily_Phospholipase A2 PLA2,HMMPfam_Phospholip_A2_2,PatternScan_PA2_HIS	-	no_errors
ZNF148	7707	genome.wustl.edu	36	3	126434175	126434175	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	126434175	126434175	G	A	SNP	ZNF148	NM_021964	human	genbank	54_36p	-1	validated	silent	c.2085	p.N695	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
INSR	3643	genome.wustl.edu	36	19	7135458	7135458	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	7135458	7135458	C	T	SNP	INSR	NM_000208	human	genbank	54_36p	-1	reviewed	silent	c.843	p.V281	0.996	HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261	superfamily_L domain-like,HMMPfam_Recep_L_domain,HMMPfam_Furin-like,superfamily_Growth factor receptor domain,HMMSmart_SM00261,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_RECEPTOR_TYR_KIN_II	-	no_errors
MYEOV2	150678	genome.wustl.edu	36	2	240714894	240714894	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	240714894	240714894	C	T	SNP	MYEOV2	NM_138336	human	genbank	54_36p	-1	predicted	missense	c.518	p.S173N	0.000	NULL	NULL	-	no_errors
FLVCR2	55640	genome.wustl.edu	36	14	75115183	75115183	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	75115183	75115183	G	A	SNP	FLVCR2	NM_017791	human	genbank	54_36p	+1	validated	missense	c.115	p.V39I	0.958	NULL	superfamily_MFS_gen_substrate_transporter,HMMPfam_MFS_1	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55865701	55865701	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	55865701	55865701	G	A	SNP	LRP1	NM_002332	human	genbank	54_36p	+1	validated	missense	c.6584	p.R2195H	0.989	HMMSmart_SM00181,superfamily_EGF/Laminin	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
CDH13	1012	genome.wustl.edu	36	16	82262025	82262025	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	82262025	82262025	T	-	DEL	CDH13	NM_001257	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.1231	p.F411fs	1.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin_pro,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors
ARNT	405	genome.wustl.edu	36	1	149071480	149071480	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	149071480	149071480	C	G	SNP	ARNT	NM_001668	human	genbank	54_36p	-1	reviewed	missense	c.823	p.D275H	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086,superfamily_Positive stranded ssRNA viruses	-	no_errors
CLPTM1	1209	genome.wustl.edu	36	19	50187387	50187387	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	50187387	50187387	C	A	SNP	CLPTM1	NM_001294	human	genbank	54_36p	+1	provisional	missense	c.1612	p.H538N	1.000	HMMPfam_CLPTM1	HMMPfam_CLPTM1	-	no_errors
ACTR5	79913	genome.wustl.edu	36	20	36810889	36810889	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	36810889	36810889	G	T	SNP	ACTR5	NM_024855	human	genbank	54_36p	+1	validated	missense	c.354	p.Q118H	1.000	superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN	superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_2	-	no_errors
TTLL2	83887	genome.wustl.edu	36	6	167672133	167672133	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	167672133	167672133	G	A	SNP	TTLL2	NM_031949	human	genbank	54_36p	+1	validated	missense	c.56	p.R19K	0.001	NULL	HMMPfam_TTL,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
INTS5	80789	genome.wustl.edu	36	11	62173469	62173469	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62173469	62173469	G	T	SNP	INTS5	NM_030628	human	genbank	54_36p	-1	provisional	missense	c.659	p.S220Y	1.000	NULL	NULL	-	no_errors
AP1G1	164	genome.wustl.edu	36	16	70324554	70324554	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	70324554	70324554	G	A	SNP	AP1G1	NM_001030007	human	genbank	54_36p	-1	reviewed	nonsense	c.2386	p.R796*	1.000	superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809	superfamily_ARM repeat,HMMPfam_Adaptin_N,superfamily_Clathrin adaptor appendage domain,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809	-	no_errors
PDAP1	11333	genome.wustl.edu	36	7	98840493	98840493	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	98840493	98840493	T	A	SNP	PDAP1	NM_014891	human	genbank	54_36p	-1	validated	missense	c.33	p.K11N	1.000	NULL	HMMPfam_PP28	-	no_errors
CALCR	799	genome.wustl.edu	36	7	92903388	92903388	+	Silent	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	92903388	92903388	G	T	SNP	CALCR	NM_001742	human	genbank	54_36p	-1	validated	silent	c.961	p.R321	1.000	superfamily_SSF81321,HMMPfam_7tm_2	superfamily_SSF111418,superfamily_SSF81321,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
LOC387770	387770	genome.wustl.edu	36	11	49822413	49822413	+	RNA	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	49822413	49822413	C	T	SNP	LOC387770	XR_017307	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.966	-	-	-	pseudogene
RBM15	64783	genome.wustl.edu	36	1	110685628	110685628	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	110685628	110685628	G	A	SNP	RBM15	NM_022768	human	genbank	54_36p	+1	validated	missense	c.2078	p.R693H	0.982	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,superfamily_SPOC domain-like,HMMPfam_SPOC	-	no_errors
RAPH1	65059	genome.wustl.edu	36	2	204013578	204013578	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	204013578	204013578	C	T	SNP	RAPH1	NM_213589	human	genbank	54_36p	-1	validated	silent	c.2580	p.S860	0.033	NULL	HMMPfam_RA,HMMSmart_SM00314,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
NUP98	4928	genome.wustl.edu	36	11	3701074	3701074	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	3701074	3701074	C	G	SNP	NUP98	NM_016320	human	genbank	54_36p	-1	reviewed	missense	c.2035	p.A679P	0.989	NULL	superfamily_SSF88633,HMMPfam_Nucleoporin2,superfamily_Peptidase_S59	-	no_errors
BMP2K	55589	genome.wustl.edu	36	4	80052038	80052038	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	80052038	80052038	C	T	SNP	BMP2K	NM_198892	human	genbank	54_36p	+1	reviewed	nonsense	c.3313	p.Q1105*	0.999	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
GRPEL1	80273	genome.wustl.edu	36	4	7116780	7116780	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	7116780	7116780	C	-	DEL	GRPEL1	NM_025196	human	genbank	54_36p	-1	provisional	frame_shift_del	c.134	p.G45fs	0.001	NULL	HMMPfam_GrpE,superfamily_Head domain of nucleotide exchange factor GrpE,PatternScan_GRPE	-	no_errors
GPBAR1	151306	genome.wustl.edu	36	2	218836167	218836167	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	218836167	218836167	C	G	SNP	GPBAR1	NM_001077191	human	genbank	54_36p	+1	reviewed	missense	c.475	p.L159V	0.053	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RPGR	6103	genome.wustl.edu	36	X	38031304	38031304	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	38031304	38031304	G	A	SNP	RPGR	NM_001034853	human	genbank	54_36p	-1	reviewed	missense	c.1892	p.T631I	0.004	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1	-	no_errors
ARL15	54622	genome.wustl.edu	36	5	53444866	53444866	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	53444866	53444866	G	A	SNP	ARL15	NM_019087	human	genbank	54_36p	-1	validated	missense	c.385	p.H129Y	1.000	HMMPfam_Arf,superfamily_SSF52540	HMMPfam_Arf,superfamily_SSF52540	-	no_errors
LRP1	4035	genome.wustl.edu	36	12	55877378	55877378	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	55877378	55877378	C	T	SNP	LRP1	NM_002332	human	genbank	54_36p	+1	validated	missense	c.9106	p.R3036W	1.000	superfamily_YWTD domain	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
ZDHHC5	25921	genome.wustl.edu	36	11	57223447	57223447	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	57223447	57223447	C	-	DEL	ZDHHC5	NM_015457	human	genbank	54_36p	+1	validated	frame_shift_del	c.1963	p.Q655fs	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors
CCDC57	284001	genome.wustl.edu	36	17	77679002	77679002	+	Silent	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	77679002	77679002	G	C	SNP	CCDC57	NM_198082	human	genbank	54_36p	-1	validated	silent	c.2418	p.P806	0.000	NULL	NULL	-	no_errors
ERBB3	2065	genome.wustl.edu	36	12	54778859	54778859	+	Silent	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54778859	54778859	G	T	SNP	ERBB3	NM_001982	human	genbank	54_36p	+1	reviewed	silent	c.2742	p.G914	0.972	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Recep_L_domain,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Growth factor receptor domain,superfamily_Protein kinase-like (PK-like),superfamily_L domain-like	-	no_errors
MYO7B	4648	genome.wustl.edu	36	2	128056398	128056398	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	128056398	128056398	C	T	SNP	MYO7B	NM_001080527	human	genbank	54_36p	+1	provisional	missense	c.1250	p.A417V	0.996	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,HMMSmart_SM00295,superfamily_Second domain of FERM,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMPfam_FERM_M	-	no_errors
LPHN2	23266	genome.wustl.edu	36	1	82206455	82206455	+	Missense_Mutation	SNP	C	C	T	rs78623872	byFrequency;by1000genomes	TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	82206455	82206455	C	T	SNP	LPHN2	NM_012302	human	genbank	54_36p	+1	reviewed	missense	c.2456	p.A819V	1.000	HMMSmart_SM00303	HMMPfam_Gal_Lectin,HMMPfam_OLF,HMMSmart_SM00284,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2,HMMPfam_Latrophilin	-	no_errors
GPR110	266977	genome.wustl.edu	36	6	47085076	47085076	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	47085076	47085076	C	T	SNP	GPR110	NM_153840	human	genbank	54_36p	-1	validated	missense	c.2054	p.R685Q	0.986	HMMPfam_7tm_2	superfamily_SEA domain,HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
ZNF643	65243	genome.wustl.edu	36	1	40701552	40701552	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	40701552	40701552	C	G	SNP	ZNF643	NM_023070	human	genbank	54_36p	+1	provisional	missense	c.1003	p.H335D	0.994	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PTGER3	5733	genome.wustl.edu	36	1	71284991	71284991	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	71284991	71284991	C	T	SNP	PTGER3	NM_000957	human	genbank	54_36p	-1	reviewed	silent	c.858	p.G286	0.999	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
TRANK1	9881	genome.wustl.edu	36	3	36850230	36850230	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	36850230	36850230	C	T	SNP	LBA1	NM_014831	human	genbank	54_36p	-1	validated	missense	c.4066	p.A1356T	0.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH13	8735	genome.wustl.edu	36	17	10171956	10171956	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	10171956	10171956	C	A	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.2643	p.M881I	1.000	NULL	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MAML1	9794	genome.wustl.edu	36	5	179126288	179126288	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	179126288	179126288	G	A	SNP	MAML1	NM_014757	human	genbank	54_36p	+1	reviewed	silent	c.1671	p.L557	1.000	NULL	HMMPfam_MamL-1	-	no_errors
KRTAP5-7	440050	genome.wustl.edu	36	11	70916477	70916477	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	70916477	70916477	C	T	SNP	KRTAP5-7	NM_001012503	human	genbank	54_36p	+1	validated	silent	c.483	p.C161	0.252	NULL	PatternScan_MOLYBDOPTERIN_PROK_1,PatternScan_VWFC_1	-	no_errors
MBOAT1	154141	genome.wustl.edu	36	6	20210518	20210518	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	20210518	20210518	A	T	SNP	MBOAT1	NM_001080480	human	genbank	54_36p	-1	provisional	missense	c.1466	p.I489N	0.019	NULL	HMMPfam_MBOAT	-	no_errors
TTC39A	22996	genome.wustl.edu	36	1	51544287	51544287	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	51544287	51544287	G	A	SNP	TTC39A	NM_001080494	human	genbank	54_36p	-1	validated	missense	c.541	p.H181Y	0.996	HMMPfam_Deme6	HMMPfam_Deme6,superfamily_TPR-like,HMMSmart_SM00028	-	no_errors
BSN	8927	genome.wustl.edu	36	3	49665818	49665818	+	Silent	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49665818	49665818	A	T	SNP	BSN	NM_003458	human	genbank	54_36p	+1	validated	silent	c.3825	p.S1275	0.213	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
CHAF1A	10036	genome.wustl.edu	36	19	4382963	4382963	+	Silent	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	4382963	4382963	T	C	SNP	CHAF1A	NM_005483	human	genbank	54_36p	+1	validated	silent	c.1962	p.P654	0.533	NULL	NULL	-	no_errors
ADRA1A	148	genome.wustl.edu	36	8	26777595	26777595	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	26777595	26777595	G	A	SNP	ADRA1A	NM_033303	human	genbank	54_36p	-1	reviewed	missense	c.809	p.A270V	0.998	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PRUNE2	158471	genome.wustl.edu	36	9	78515001	78515001	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	78515001	78515001	G	A	SNP	PRUNE2	ENST00000376718	human	ensembl	54_36p	-1	known	missense	c.932	p.A311V	0.998	NULL	HMMSmart_SM00516,superfamily_CRAL/TRIO domain,superfamily_Ferritin-like	-	no_errors
SH2B1	25970	genome.wustl.edu	36	16	28785264	28785264	+	Silent	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	28785264	28785264	C	G	SNP	SH2B1	NM_015503	human	genbank	54_36p	+1	reviewed	silent	c.348	p.P116	0.096	NULL	HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
PRKG2	5593	genome.wustl.edu	36	4	82250779	82250779	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	82250779	82250779	C	T	SNP	PRKG2	NM_006259	human	genbank	54_36p	-1	provisional	missense	c.1787	p.G596E	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X	-	no_errors
POC1A	25886	genome.wustl.edu	36	3	52084964	52084964	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52084964	52084964	G	A	SNP	WDR51A	NM_015426	human	genbank	54_36p	-1	provisional	silent	c.1203	p.I401	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ZNF211	10520	genome.wustl.edu	36	19	62837206	62837206	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	62837206	62837206	C	T	SNP	ZNF211	NM_006385	human	genbank	54_36p	+1	validated	missense	c.94	p.P32S	0.015	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
HSD11B1	3290	genome.wustl.edu	36	1	207974401	207974401	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	207974401	207974401	C	A	SNP	HSD11B1	NM_005525	human	genbank	54_36p	+1	reviewed	missense	c.791	p.T264N	0.000	superfamily_NAD(P)-binding Rossmann-fold domains	superfamily_NAD(P)-binding Rossmann-fold domains,HMMPfam_adh_short,PatternScan_ADH_SHORT	-	no_errors
TNKS1BP1	85456	genome.wustl.edu	36	11	56826771	56826771	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	56826771	56826771	G	A	SNP	TNKS1BP1	NM_033396	human	genbank	54_36p	-1	validated	missense	c.4421	p.A1474V	0.002	NULL	NULL	-	no_errors
ARSG	22901	genome.wustl.edu	36	17	63815380	63815380	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	63815380	63815380	C	T	SNP	ARSG	NM_014960	human	genbank	54_36p	+1	validated	silent	c.151	p.L51	1.000	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase	superfamily_Alkaline_phosphatase_core,HMMPfam_Sulfatase,PatternScan_SULFATASE_1,PatternScan_SULFATASE_2	-	no_errors
ARPP19	10776	genome.wustl.edu	36	15	50631503	50631503	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	50631503	50631503	C	T	SNP	ARPP-19	NM_006628	human	genbank	54_36p	-1	validated	missense	c.259	p.V87I	1.000	HMMPfam_Endosulfine	HMMPfam_Endosulfine	-	no_errors
DHTKD1	55526	genome.wustl.edu	36	10	12169632	12169632	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	12169632	12169632	G	A	SNP	DHTKD1	NM_018706	human	genbank	54_36p	+1	validated	silent	c.615	p.L205	1.000	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_E1_dh,HMMPfam_Transket_pyr	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226479000	226479000	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	226479000	226479000	C	T	SNP	OBSCN	NM_001098623	human	genbank	54_36p	+1	reviewed	silent	c.2871	p.A957	0.974	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMPfam_V-set,HMMSmart_SM00015,HMMPfam_IQ,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Protein kinase-like (PK-like),PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
HNRNPH1	3187	genome.wustl.edu	36	5	178982686	178982686	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	178982686	178982686	G	A	SNP	HNRNPH1	NM_005520	human	genbank	54_36p	-1	reviewed	missense	c.55	p.P19S	1.000	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RNPHF,superfamily_RNA-binding domain RBD	-	no_errors
GGT3P	2679	genome.wustl.edu	36	22	17146948	17146948	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	17146948	17146948	G	A	SNP	GGT3P	ENST00000255845	human	ensembl	54_36p	-1	known	missense	c.838	p.R280W	1.000	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100195315	100195315	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100195315	100195315	C	T	SNP	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	nonsense	c.3607	p.Q1203*	0.991	HMMPfam_VWD,HMMSmart_SM00216	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00214,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_TIL_assoc,HMMPfam_EGF,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
SLC5A6	8884	genome.wustl.edu	36	2	27281759	27281759	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	27281759	27281759	C	T	SNP	SLC5A6	NM_021095	human	genbank	54_36p	-1	provisional	missense	c.697	p.A233T	0.655	HMMPfam_SSF	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
NEURL	9148	genome.wustl.edu	36	10	105321445	105321445	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	105321445	105321445	G	A	SNP	NEURL	NM_004210	human	genbank	54_36p	+1	validated	silent	c.525	p.K175	1.000	HMMSmart_SM00588	HMMSmart_SM00588,HMMPfam_Neuralized,superfamily_RING/U-box	-	no_errors
NR1D1	9572	genome.wustl.edu	36	17	35505452	35505452	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	35505452	35505452	G	C	SNP	NR1D1	NM_021724	human	genbank	54_36p	-1	provisional	missense	c.1019	p.P340R	1.000	superfamily_Str_ncl_receptor	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
OR2S2	56656	genome.wustl.edu	36	9	35947250	35947250	+	Silent	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35947250	35947250	G	T	SNP	OR2S2	NM_019897	human	genbank	54_36p	-1	provisional	silent	c.816	p.P272	0.421	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
FYCO1	79443	genome.wustl.edu	36	3	45974999	45974999	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	45974999	45974999	C	T	SNP	FYCO1	NM_024513	human	genbank	54_36p	-1	validated	missense	c.3704	p.G1235D	0.114	NULL	superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger,superfamily_Supernatant protein factor (SPF) C-terminal domain	-	no_errors
SLC7A10	56301	genome.wustl.edu	36	19	38395599	38395600	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38395599	38395600	-	G	INS	SLC7A10	NM_019849	human	genbank	54_36p	-1	validated	frame_shift_ins	c.506_505	p.L169fs	1.000:1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
ENSG00000186322	0	genome.wustl.edu	36	15	82856519	82856519	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	82856519	82856519	C	T	SNP	ENSG00000186322	ENST00000339078	human	ensembl	54_36p	-1	known	missense	c.983	p.R328H	0.001	NULL	NULL	-	no_errors
ST6GALNAC4	27090	genome.wustl.edu	36	9	129710607	129710607	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	129710607	129710607	G	A	SNP	ST6GALNAC4	NM_175039	human	genbank	54_36p	-1	reviewed	missense	c.794	p.A265V	0.142	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
PIP5K1C	23396	genome.wustl.edu	36	19	3594314	3594314	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	3594314	3594314	T	C	SNP	PIP5K1C	NM_012398	human	genbank	54_36p	-1	reviewed	missense	c.1576	p.T526A	1.000	NULL	superfamily_SSF56104,HMMSmart_PIPKc,HMMPfam_PIP5K	-	no_errors
LOC100130178	100130178	genome.wustl.edu	36	4	143458024	143458024	+	RNA	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	143458024	143458024	G	A	SNP	LOC100130178	XR_039504	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DMTF1	9988	genome.wustl.edu	36	7	86632267	86632267	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	86632267	86632267	C	T	SNP	DMTF1	NM_021145	human	genbank	54_36p	+1	reviewed	missense	c.74	p.T25I	0.996	NULL	superfamily_Homeodomain-like,HMMSmart_SM00717,HMMPfam_Myb_DNA-binding	-	no_errors
LOC100132820	100132820	genome.wustl.edu	36	17	21828321	21828321	+	Silent	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	21828321	21828321	C	A	SNP	LOC100132820	XM_001716790	human	genbank	54_36p	+1	model	silent	c.57	p.A19	0.000	NULL	NULL	-	no_errors
TEKT1	83659	genome.wustl.edu	36	17	6644125	6644125	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	6644125	6644125	T	C	SNP	TEKT1	NM_053285	human	genbank	54_36p	-1	reviewed	missense	c.1202	p.D401G	0.005	NULL	HMMPfam_Tektin	-	no_errors
LOC643696	643696	genome.wustl.edu	36	15	80731829	80731829	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	80731829	80731829	T	C	SNP	LOC643696	XM_001714093	human	genbank	54_36p	-1	model	missense	c.806	p.E269G	0.755	NULL	NULL	-	no_errors
KRTAP5-5	439915	genome.wustl.edu	36	11	1608201	1608201	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	1608201	1608201	G	A	SNP	KRTAP5-5	NM_001001480	human	genbank	54_36p	+1	validated	silent	c.555	p.Q185	0.289	NULL	PatternScan_2FE2S_FER_1,PatternScan_MOLYBDOPTERIN_PROK_1	-	no_errors
TAGAP	117289	genome.wustl.edu	36	6	159377309	159377309	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	159377309	159377309	C	T	SNP	TAGAP	NM_054114	human	genbank	54_36p	-1	reviewed	silent	c.1734	p.V578	0.038	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
UBA6	55236	genome.wustl.edu	36	4	68226031	68226031	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	68226031	68226031	C	A	SNP	UBA6	NM_018227	human	genbank	54_36p	-1	validated	nonsense	c.358	p.E120*	1.000	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF	superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_ThiF,HMMPfam_UBA_e1_thiolCys,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors
DLEC1	9940	genome.wustl.edu	36	3	38133786	38133786	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	38133786	38133786	G	A	SNP	DLEC1	NM_007337	human	genbank	54_36p	+1	reviewed	silent	c.4389	p.V1463	0.951	NULL	NULL	-	no_errors
POTEF	728378	genome.wustl.edu	36	2	130549015	130549015	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	130549015	130549015	C	T	SNP	POTEF	NM_001099771	human	genbank	54_36p	-1	validated	missense	c.2500	p.V834M	1.000	superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK,superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2	-	no_errors
CD164L2	388611	genome.wustl.edu	36	1	27581589	27581589	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	27581589	27581589	G	C	SNP	CD164L2	NM_207397	human	genbank	54_36p	-1	validated	missense	c.244	p.P82A	0.018	HMMPfam_MGC-24	HMMPfam_MGC-24	-	no_errors
TNKS1BP1	85456	genome.wustl.edu	36	11	56833463	56833463	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	56833463	56833463	C	T	SNP	TNKS1BP1	NM_033396	human	genbank	54_36p	-1	validated	missense	c.3298	p.A1100T	0.001	NULL	NULL	-	no_errors
GNPAT	8443	genome.wustl.edu	36	1	229443788	229443788	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	229443788	229443788	G	A	SNP	GNPAT	NM_014236	human	genbank	54_36p	+1	reviewed	missense	c.41	p.G14D	0.527	NULL	HMMPfam_Acyltransferase,superfamily_SSF69593,HMMSmart_PlsC	-	no_errors
HAVCR2	84868	genome.wustl.edu	36	5	156455001	156455001	+	Silent	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	156455001	156455001	A	G	SNP	HAVCR2	NM_032782	human	genbank	54_36p	-1	validated	silent	c.570	p.N190	0.043	NULL	HMMSmart_SM00409,superfamily_Immunoglobulin,HMMPfam_V-set	-	no_errors
ACSF2	80221	genome.wustl.edu	36	17	45894640	45894640	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	45894640	45894640	C	G	SNP	ACSF2	NM_025149	human	genbank	54_36p	+1	validated	missense	c.604	p.P202A	0.915	superfamily_SSF56801,HMMPfam_AMP-binding	superfamily_SSF56801,HMMPfam_AMP-binding,PatternScan_AMP_BINDING	-	no_errors
SGCE	8910	genome.wustl.edu	36	7	94086112	94086112	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	94086112	94086112	C	T	SNP	SGCE	NM_001099401	human	genbank	54_36p	-1	reviewed	missense	c.556	p.A186T	1.000	HMMPfam_Sarcoglycan_2	HMMPfam_Sarcoglycan_2,superfamily_Cadherin-like,HMMSmart_SM00736	-	no_errors
CD226	10666	genome.wustl.edu	36	18	65765622	65765622	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	65765622	65765622	T	C	SNP	CD226	NM_006566	human	genbank	54_36p	-1	reviewed	missense	c.1	p.M1V	1.000	NULL	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGc2	-	no_errors
TNRC18B	27320	genome.wustl.edu	36	7	5358200	5358200	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	5358200	5358200	T	A	SNP	TNRC18B	ENST00000399537	human	ensembl	54_36p	-1	known	missense	c.4889	p.Q1630L	0.900	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
CSMD1	64478	genome.wustl.edu	36	8	2806077	2806077	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	2806077	2806077	C	T	SNP	CSMD1	ENST00000335551	human	ensembl	54_36p	-1	known	missense	c.8156	p.G2719D	1.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,PatternScan_GLYCOSYL_HYDROL_F10	-	no_start_codon
LOC400347	400347	genome.wustl.edu	36	15	29532927	29532927	+	RNA	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	29532927	29532927	G	A	SNP	LOC400347	XR_016518	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.991	-	-	-	pseudogene
LOC728380	728380	genome.wustl.edu	36	6	17639123	17639123	+	RNA	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	17639123	17639123	A	T	SNP	LOC728380	XR_015500	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
GNA15	2769	genome.wustl.edu	36	19	3113843	3113843	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	3113843	3113843	G	A	SNP	GNA15	NM_002068	human	genbank	54_36p	+1	validated	silent	c.951	p.T317	0.000	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKS1B	56899	genome.wustl.edu	36	12	98693528	98693528	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	98693528	98693528	G	A	SNP	ANKS1B	NM_152788	human	genbank	54_36p	-1	validated	missense	c.890	p.P297L	0.176	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID	-	no_errors
C2orf84	653140	genome.wustl.edu	36	2	24200769	24200769	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	24200769	24200769	G	A	SNP	C2orf84	ENST00000407625	human	ensembl	54_36p	+1	known	missense	c.34	p.G12S	0.007	NULL	NULL	-	no_errors
ZNF446	55663	genome.wustl.edu	36	19	63680906	63680906	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	63680906	63680906	G	T	SNP	ZNF446	NM_017908	human	genbank	54_36p	+1	provisional	nonsense	c.433	p.E145*	0.009	NULL	HMMPfam_SCAN,HMMSmart_SCAN,HMMSmart_KRAB,HMMPfam_KRAB,superfamily_Krueppel-associated_box,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LRRC10	376132	genome.wustl.edu	36	12	68290724	68290724	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	68290724	68290724	C	T	SNP	LRRC10	NM_201550	human	genbank	54_36p	-1	provisional	silent	c.162	p.L54	1.000	superfamily_SSF52058,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRR_1	-	no_errors
GBA	2629	genome.wustl.edu	36	1	153472771	153472771	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153472771	153472771	G	A	SNP	GBA	NM_000157	human	genbank	54_36p	-1	reviewed	silent	c.1113	p.P371	0.762	HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases	superfamily_Glycosyl hydrolase domain,HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases	-	no_errors
HLA-J	3137	genome.wustl.edu	36	6	30082641	30082641	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30082641	30082641	C	T	SNP	HLA-J	ENST00000376791	human	ensembl	54_36p	+1	known	silent	c.150	p.D50	0.998	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_errors
CH25H	9023	genome.wustl.edu	36	10	90956657	90956657	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	90956657	90956657	G	T	SNP	CH25H	NM_003956	human	genbank	54_36p	-1	reviewed	missense	c.373	p.L125M	0.038	NULL	HMMPfam_FA_hydroxylase	-	no_errors
ABCB5	340273	genome.wustl.edu	36	7	20759553	20759553	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	20759553	20759553	G	A	SNP	ABCB5	NM_178559	human	genbank	54_36p	+1	validated	missense	c.2140	p.G714S	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_ABC_tran,PatternScan_ABC_TRANSPORTER_1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,HMMPfam_ABC_membrane	-	no_errors
LIPE	3991	genome.wustl.edu	36	19	47602265	47602265	+	Silent	SNP	T	T	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47602265	47602265	T	G	SNP	LIPE	NM_005357	human	genbank	54_36p	-1	reviewed	silent	c.2253	p.A751	0.988	superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_3	HMMPfam_HSL_N,superfamily_alpha/beta-Hydrolases,PatternScan_LIPASE_GDXG_HIS,HMMPfam_Abhydrolase_3,PatternScan_LIPASE_GDXG_SER	-	no_errors
ITGA4	3676	genome.wustl.edu	36	2	182030648	182030648	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	182030648	182030648	G	A	SNP	ITGA4	NM_000885	human	genbank	54_36p	+1	reviewed	missense	c.22	p.E8K	0.003	NULL	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
LAMA3	3909	genome.wustl.edu	36	18	19741807	19741807	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	19741807	19741807	A	G	SNP	LAMA3	NM_198129	human	genbank	54_36p	+1	reviewed	missense	c.6925	p.I2309V	1.000	HMMPfam_Laminin_II	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,PatternScan_CHAPERONINS_CPN60,superfamily_EGF/Laminin	-	no_errors
RPGRIP1L	23322	genome.wustl.edu	36	16	52277982	52277982	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	52277982	52277982	C	A	SNP	RPGRIP1L	NM_015272	human	genbank	54_36p	-1	reviewed	missense	c.640	p.V214F	1.000	NULL	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
NCOA2	10499	genome.wustl.edu	36	8	71203717	71203717	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	71203717	71203717	A	T	SNP	NCOA2	NM_006540	human	genbank	54_36p	-1	validated	missense	c.3377	p.L1126Q	1.000	NULL	superfamily_HLH_basic,HMMSmart_HLH,HMMPfam_PAS,HMMSmart_PAS,superfamily_SSF55785,HMMSmart_PAC,HMMPfam_SRC-1,superfamily_Nuc_recept_coact,HMMPfam_Nuc_rec_co-act,HMMPfam_DUF1518	-	no_errors
SF3B3	23450	genome.wustl.edu	36	16	69159752	69159752	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	69159752	69159752	A	T	SNP	SF3B3	NM_012426	human	genbank	54_36p	+1	reviewed	missense	c.3018	p.Q1006H	1.000	HMMPfam_CPSF_A	PatternScan_IG_MHC,HMMPfam_CPSF_A	-	no_errors
EIF3E	3646	genome.wustl.edu	36	8	109330060	109330060	+	Silent	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	109330060	109330060	C	A	SNP	EIF3E	NM_001568	human	genbank	54_36p	-1	validated	silent	c.48	p.R16	0.999	HMMPfam_eIF3_N	"HMMPfam_eIF3_N,HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DPEP3	64180	genome.wustl.edu	36	16	66567263	66567263	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66567263	66567263	C	T	SNP	DPEP3	NM_022357	human	genbank	54_36p	-1	reviewed	missense	c.1448	p.R483Q	0.000	NULL	superfamily_Metallo-dependent hydrolases,HMMPfam_Peptidase_M19,PatternScan_RENAL_DIPEPTIDASE_1	-	no_errors
INPP5D	3635	genome.wustl.edu	36	2	233734508	233734508	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	233734508	233734508	G	A	SNP	INPP5D	ENST00000359570	human	ensembl	54_36p	+1	known	missense	c.1094	p.G365D	1.000	superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos	HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF55550,superfamily_Exo_endo_phos,HMMSmart_IPPc,HMMPfam_Exo_endo_phos	-	no_errors
MAGED4	728239	genome.wustl.edu	36	X	51950853	51950853	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	51950853	51950853	C	T	SNP	MAGED4	ENST00000284759	human	ensembl	54_36p	+1	known	missense	c.1694	p.P565L	0.996	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
HRCT1	646962	genome.wustl.edu	36	9	35896471	35896471	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35896471	35896471	C	T	SNP	HRCT1	NM_001039792	human	genbank	54_36p	+1	validated	missense	c.187	p.R63W	0.050	NULL	NULL	-	no_errors
KRT13	3860	genome.wustl.edu	36	17	36911107	36911107	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36911107	36911107	G	A	SNP	KRT13	NM_153490	human	genbank	54_36p	-1	reviewed	missense	c.1304	p.T435M	0.000	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
TLE3	7090	genome.wustl.edu	36	15	68139958	68139958	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	68139958	68139958	G	A	SNP	TLE3	NM_005078	human	genbank	54_36p	-1	validated	missense	c.679	p.R227W	1.000	NULL	HMMPfam_TLE_N,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
ACOT11	26027	genome.wustl.edu	36	1	54832276	54832276	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	54832276	54832276	C	A	SNP	ACOT11	NM_015547	human	genbank	54_36p	+1	reviewed	missense	c.447	p.F149L	0.996	superfamily_Thioesterase/thiol ester dehydrase-isomerase	superfamily_Thioesterase/thiol ester dehydrase-isomerase,HMMPfam_4HBT,superfamily_Bet v1-like,HMMPfam_START,HMMSmart_SM00234	-	no_errors
CHRNA2	1135	genome.wustl.edu	36	8	27376898	27376898	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	27376898	27376898	G	C	SNP	CHRNA2	NM_000742	human	genbank	54_36p	-1	validated	missense	c.979	p.L327V	1.000	superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
DNPEP	23549	genome.wustl.edu	36	2	219959868	219959868	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219959868	219959868	G	A	SNP	DNPEP	NM_012100	human	genbank	54_36p	-1	reviewed	missense	c.209	p.P70L	0.975	HMMPfam_Peptidase_M18,superfamily_SSF53187	HMMPfam_Peptidase_M18,superfamily_SSF53187	-	no_errors
ACTL9	284382	genome.wustl.edu	36	19	8669240	8669241	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8669240	8669241	-	G	INS	MGC33407	NM_178525	human	genbank	54_36p	-1	validated	frame_shift_ins	c.812_811	p.R271fs	0.481:0.997	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,superfamily_Actin-like ATPase domain,HMMSmart_SM00268,PatternScan_N6_MTASE	-	no_errors
CACNA1G	8913	genome.wustl.edu	36	17	46058522	46058522	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	46058522	46058522	G	A	SNP	CACNA1G	NM_018896	human	genbank	54_36p	+1	validated	missense	c.6545	p.R2182H	0.147	NULL	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
SMTN	6525	genome.wustl.edu	36	22	29815809	29815809	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29815809	29815809	C	A	SNP	SMTN	NM_134270	human	genbank	54_36p	+1	reviewed	missense	c.596	p.S199Y	0.026	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	-	no_errors
TUBA4A	7277	genome.wustl.edu	36	2	219823741	219823741	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219823741	219823741	C	T	SNP	TUBA4A	NM_006000	human	genbank	54_36p	-1	reviewed	silent	c.924	p.R308	0.862	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
LAMC3	10319	genome.wustl.edu	36	9	132897308	132897308	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	132897308	132897308	G	T	SNP	LAMC3	NM_006059	human	genbank	54_36p	+1	reviewed	missense	c.734	p.G245V	1.000	HMMSmart_LamNT,HMMPfam_Laminin_N	HMMSmart_LamNT,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,HMMPfam_Laminin_B,PatternScan_EGF_2	-	no_errors
ARL11	115761	genome.wustl.edu	36	13	49102909	49102909	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	49102909	49102909	G	A	SNP	ARL11	NM_138450	human	genbank	54_36p	+1	validated	missense	c.325	p.D109N	0.000	HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540	PatternScan_ARF,HMMPfam_Arf,HMMSmart_ARF,superfamily_SSF52540	-	no_errors
ENSG00000221307	0	genome.wustl.edu	36	12	8368223	8368223	+	RNA	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	8368223	8368223	G	A	SNP	ENSG00000221307	ENST00000408380	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
RNF216	54476	genome.wustl.edu	36	7	5629124	5629124	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	5629124	5629124	G	C	SNP	RNF216	NM_207111	human	genbank	54_36p	-1	reviewed	missense	c.2665	p.P889A	1.000	NULL	HMMSmart_IBR,superfamily_SSF57850	-	no_errors
ILF3	3609	genome.wustl.edu	36	19	10654251	10654251	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10654251	10654251	C	T	SNP	ILF3	NM_012218	human	genbank	54_36p	+1	reviewed	silent	c.1419	p.G473	0.992	superfamily_dsRNA-binding domain-like	HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
RBPMS2	348093	genome.wustl.edu	36	15	62828292	62828292	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	62828292	62828292	C	T	SNP	RBPMS2	NM_194272	human	genbank	54_36p	-1	provisional	silent	c.378	p.V126	1.000	NULL	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
SGK269	79834	genome.wustl.edu	36	15	75193977	75193977	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	75193977	75193977	G	C	SNP	SGK269	NM_024776	human	genbank	54_36p	-1	validated	missense	c.4817	p.P1606R	1.000	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_ATP,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
UTP20	27340	genome.wustl.edu	36	12	100209778	100209778	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	100209778	100209778	C	T	SNP	UTP20	NM_014503	human	genbank	54_36p	+1	validated	missense	c.1019	p.T340M	0.852	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_DRIM	-	no_errors
MYOF	26509	genome.wustl.edu	36	10	95122813	95122813	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	95122813	95122813	T	A	SNP	MYOF	NM_013451	human	genbank	54_36p	-1	reviewed	missense	c.2321	p.D774V	1.000	HMMPfam_FerB	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2,HMMPfam_FerI,HMMPfam_FerA,HMMPfam_FerB,HMMSmart_SM00693,HMMSmart_SM00694	-	no_errors
SVOPL	136306	genome.wustl.edu	36	7	137998368	137998368	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	137998368	137998368	G	A	SNP	SVOPL	NM_174959	human	genbank	54_36p	-1	validated	missense	c.5	p.A2V	0.993	NULL	superfamily_MFS_gen_substrate_transporter,HMMPfam_Sugar_tr	-	no_errors
PPFIA3	8541	genome.wustl.edu	36	19	54333330	54333330	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54333330	54333330	G	T	SNP	PPFIA3	NM_003660	human	genbank	54_36p	+1	reviewed	missense	c.1910	p.R637L	1.000	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1,HMMPfam_SAM_2	-	no_errors
FICD	11153	genome.wustl.edu	36	12	107437014	107437014	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	107437014	107437014	T	C	SNP	FICD	NM_007076	human	genbank	54_36p	+1	validated	missense	c.1009	p.W337R	1.000	NULL	superfamily_SSF48452,HMMPfam_Fic	-	no_errors
FNTB	2342	genome.wustl.edu	36	14	64564030	64564030	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	64564030	64564030	T	A	SNP	FNTB	NM_002028	human	genbank	54_36p	+1	validated	missense	c.481	p.C161S	1.000	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Prenyltrans	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Prenyltrans	-	no_errors
REC8	9985	genome.wustl.edu	36	14	23711762	23711762	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23711762	23711762	G	T	SNP	REC8	NM_001048205	human	genbank	54_36p	+1	reviewed	missense	c.57	p.W19C	1.000	HMMPfam_Rad21_Rec8_N	HMMPfam_Rad21_Rec8_N,HMMPfam_Rad21_Rec8	-	no_errors
PKN2	5586	genome.wustl.edu	36	1	88979371	88979371	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	88979371	88979371	G	A	SNP	PKN2	NM_006256	human	genbank	54_36p	+1	validated	missense	c.161	p.R54K	1.000	superfamily_PKN_effector,HMMSmart_Hr1,HMMPfam_HR1	superfamily_PKN_effector,HMMSmart_Hr1,HMMPfam_HR1,superfamily_C2_CaLB,HMMSmart_C2,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_S_TK_X,HMMPfam_Pkinase_C	-	no_errors
NFIX	4784	genome.wustl.edu	36	19	13044887	13044887	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	13044887	13044887	C	T	SNP	NFIX	NM_002501	human	genbank	54_36p	+1	validated	nonsense	c.586	p.Q196*	1.000	NULL	HMMPfam_NfI_DNAbd_pre-N,PatternScan_CTF_NFI_1,HMMPfam_MH1,HMMSmart_DWA,HMMPfam_CTF_NFI	-	no_errors
SLMAP	7871	genome.wustl.edu	36	3	57874001	57874001	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	57874001	57874001	G	A	SNP	SLMAP	NM_007159	human	genbank	54_36p	+1	validated	silent	c.1995	p.L665	0.999	NULL	superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA,HMMPfam_Prefoldin_2,PatternScan_FETUIN_2	-	no_errors
MKNK2	2872	genome.wustl.edu	36	19	1988793	1988793	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1988793	1988793	C	-	DEL	MKNK2	NM_017572	human	genbank	54_36p	-1	validated	frame_shift_del	c.1190	p.C397fs	0.002	NULL	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
KIF17	57576	genome.wustl.edu	36	1	20903963	20903963	+	Silent	SNP	G	G	A	rs34474463		TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	20903963	20903963	G	A	SNP	KIF17	NM_020816	human	genbank	54_36p	-1	validated	silent	c.687	p.D229	1.000	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
CHAD	1101	genome.wustl.edu	36	17	45900986	45900986	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	45900986	45900986	A	G	SNP	CHAD	NM_001267	human	genbank	54_36p	-1	reviewed	missense	c.188	p.F63S	1.000	superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,HMMPfam_LRRCT	-	no_errors
FLJ25006	0	genome.wustl.edu	36	17	23963212	23963212	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	23963212	23963212	C	A	SNP	FLJ25006	NM_144610	human	genbank	54_36p	-1	provisional	missense	c.670	p.G224C	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
DECR1	1666	genome.wustl.edu	36	8	91133259	91133259	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	91133259	91133259	G	A	SNP	DECR1	NM_001359	human	genbank	54_36p	+1	reviewed	nonsense	c.966	p.W322*	1.000	NULL	PatternScan_ADH_SHORT,superfamily_NAD(P)-bd,HMMPfam_adh_short	-	no_errors
TEX15	56154	genome.wustl.edu	36	8	30825602	30825602	+	Silent	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	30825602	30825602	T	C	SNP	TEX15	NM_031271	human	genbank	54_36p	-1	validated	silent	c.474	p.P158	0.009	NULL	NULL	-	no_errors
TNN	63923	genome.wustl.edu	36	1	173313404	173313404	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	173313404	173313404	G	C	SNP	TNN	NM_022093	human	genbank	54_36p	+1	validated	missense	c.227	p.G76A	0.627	NULL	PatternScan_EGF_1,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_EGF/Laminin,PatternScan_EGF_2,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
ZNF862	643641	genome.wustl.edu	36	7	149192165	149192165	+	Silent	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149192165	149192165	C	A	SNP	ZNF862	NM_001099220	human	genbank	54_36p	+1	provisional	silent	c.3369	p.L1123	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,HMMSmart_SM00597,HMMPfam_hATC	-	no_errors
SLC6A9	6536	genome.wustl.edu	36	1	44249884	44249884	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	44249884	44249884	T	C	SNP	SLC6A9	NM_201649	human	genbank	54_36p	-1	validated	missense	c.185	p.H62R	0.001	NULL	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
GNA15	2769	genome.wustl.edu	36	19	3101279	3101279	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	3101279	3101279	G	A	SNP	GNA15	NM_002068	human	genbank	54_36p	+1	validated	missense	c.481	p.V161M	0.380	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	HMMPfam_G-alpha,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Transducin (alpha subunit) insertion domain	-	no_errors
PTK2	5747	genome.wustl.edu	36	8	141943656	141943656	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	141943656	141943656	C	T	SNP	PTK2	NM_005607	human	genbank	54_36p	-1	reviewed	silent	c.453	p.L151	1.000	HMMSmart_B41	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_FERM_2,HMMPfam_Focal_AT,superfamily_Focal_AT	-	no_errors
C3orf24	115795	genome.wustl.edu	36	3	10121348	10121348	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	10121348	10121348	G	A	SNP	C3orf24	NM_173472	human	genbank	54_36p	-1	validated	silent	c.111	p.P37	0.984	NULL	NULL	-	no_errors
IMP5	162540	genome.wustl.edu	36	17	41279223	41279223	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	41279223	41279223	T	A	SNP	IMP5	NM_175882	human	genbank	54_36p	+1	validated	missense	c.1171	p.F391I	1.000	HMMPfam_Peptidase_A22B,HMMSmart_SM00730	superfamily_Transferrin receptor ectodomain apical domain,HMMPfam_Peptidase_A22B,HMMSmart_SM00730	-	no_errors
CHUK	1147	genome.wustl.edu	36	10	101954874	101954874	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	101954874	101954874	G	T	SNP	CHUK	NM_001278	human	genbank	54_36p	-1	reviewed	missense	c.1304	p.S435Y	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
ATP1A2	477	genome.wustl.edu	36	1	158359739	158359739	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	158359739	158359739	G	T	SNP	ATP1A2	NM_000702	human	genbank	54_36p	+1	reviewed	missense	c.290	p.G97V	1.000	HMMPfam_Cation_ATPase_N,superfamily_SSF81665	HMMPfam_Cation_ATPase_N,superfamily_SSF81665,HMMPfam_E1-E2_ATPase,superfamily_SSF81653,superfamily_SSF56784,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_SSF81660,HMMPfam_Cation_ATPase_C	-	no_errors
SLC26A9	115019	genome.wustl.edu	36	1	204154651	204154651	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	204154651	204154651	G	-	DEL	SLC26A9	NM_134325	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2196	p.D732fs	1.000	HMMPfam_STAS,superfamily_STAS	HMMPfam_STAS,superfamily_STAS,HMMPfam_Sulfate_transp	-	no_errors
DDX50	79009	genome.wustl.edu	36	10	70376354	70376354	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	70376354	70376354	C	T	SNP	DDX50	NM_024045	human	genbank	54_36p	+1	reviewed	nonsense	c.2176	p.R726*	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_DEAD,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_GUCT	-	no_errors
DNAJC5	80331	genome.wustl.edu	36	20	62031205	62031205	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	62031205	62031205	G	A	SNP	DNAJC5	NM_025219	human	genbank	54_36p	+1	provisional	silent	c.204	p.T68	0.944	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1	-	no_errors
CRB2	286204	genome.wustl.edu	36	9	125173031	125173031	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	125173031	125173031	T	A	SNP	CRB2	NM_173689	human	genbank	54_36p	+1	validated	missense	c.1878	p.H626Q	0.984	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
TRIM65	201292	genome.wustl.edu	36	17	71398991	71398991	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71398991	71398991	C	T	SNP	TRIM65	NM_173547	human	genbank	54_36p	-1	validated	missense	c.1018	p.A340T	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
EVX2	344191	genome.wustl.edu	36	2	176653753	176653753	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	176653753	176653753	C	T	SNP	EVX2	NM_001080458	human	genbank	54_36p	-1	provisional	silent	c.759	p.P253	0.989	superfamily_Homeodomain_like	superfamily_Homeodomain_like,HMMSmart_HOX,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
FMNL3	91010	genome.wustl.edu	36	12	48346181	48346181	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	48346181	48346181	C	T	SNP	FMNL3	NM_175736	human	genbank	54_36p	-1	validated	missense	c.287	p.R96Q	1.000	HMMPfam_Drf_GBD	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_FH2_actin_bd,HMMSmart_FH2,HMMPfam_FH2	-	no_errors
WNT11	7481	genome.wustl.edu	36	11	75585345	75585345	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	75585345	75585345	C	T	SNP	WNT11	NM_004626	human	genbank	54_36p	-1	reviewed	missense	c.149	p.G50D	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
GCN1L1	10985	genome.wustl.edu	36	12	119064707	119064707	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	119064707	119064707	G	A	SNP	GCN1L1	NM_006836	human	genbank	54_36p	-1	validated	missense	c.5816	p.A1939V	1.000	HMMPfam_HEAT,superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
PPP6C	5537	genome.wustl.edu	36	9	126955667	126955667	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	126955667	126955667	G	A	SNP	PPP6C	NM_002721	human	genbank	54_36p	-1	reviewed	missense	c.635	p.A212V	1.000	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos	superfamily_Metallo-dependent phosphatases,HMMSmart_SM00156,HMMPfam_Metallophos,PatternScan_SER_THR_PHOSPHATASE	-	no_errors
PLCB3	5331	genome.wustl.edu	36	11	63786824	63786824	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	63786824	63786824	G	A	SNP	PLCB3	NM_000932	human	genbank	54_36p	+1	provisional	missense	c.2323	p.V775M	0.999	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMPfam_PI-PLC-Y,HMMSmart_SM00149,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_PLC-beta_C	-	no_errors
OTOF	9381	genome.wustl.edu	36	2	26556590	26556590	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26556590	26556590	A	G	SNP	OTOF	NM_194248	human	genbank	54_36p	-1	reviewed	missense	c.1897	p.F633L	1.000	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
WBSCR23	80112	genome.wustl.edu	36	7	73585350	73585350	+	RNA	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73585350	73585350	T	C	SNP	WBSCR23	XR_040836	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
CCDC102B	79839	genome.wustl.edu	36	18	64829203	64829203	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	64829203	64829203	C	T	SNP	CCDC102B	NM_001093729	human	genbank	54_36p	+1	validated	missense	c.1316	p.A439V	0.967	NULL	NULL	-	no_errors
NLRP10	338322	genome.wustl.edu	36	11	7939060	7939060	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	7939060	7939060	C	T	SNP	NLRP10	NM_176821	human	genbank	54_36p	-1	reviewed	nonsense	c.675	p.W225*	0.000	superfamily_SSF52540,HMMPfam_NACHT	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,superfamily_SSF52540,HMMPfam_NACHT	-	no_errors
NLRP5	126206	genome.wustl.edu	36	19	61231368	61231368	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	61231368	61231368	C	T	SNP	NLRP5	NM_153447	human	genbank	54_36p	+1	reviewed	silent	c.1900	p.L634	0.002	NULL	superfamily_DEATH domain,HMMPfam_PAAD_DAPIN,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
VASH2	79805	genome.wustl.edu	36	1	211212669	211212669	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	211212669	211212669	G	T	SNP	VASH2	NM_024749	human	genbank	54_36p	+1	validated	missense	c.490	p.G164C	1.000	NULL	NULL	-	no_errors
SLC22A23	63027	genome.wustl.edu	36	6	3218610	3218610	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	3218610	3218610	C	T	SNP	SLC22A23	NM_021945	human	genbank	54_36p	-1	validated	missense	c.896	p.G299D	1.000	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
LMAN1L	79748	genome.wustl.edu	36	15	72895681	72895681	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72895681	72895681	G	A	SNP	LMAN1L	NM_021819	human	genbank	54_36p	+1	validated	silent	c.306	p.L102	0.226	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Lectin_leg-like	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Lectin_leg-like	-	no_errors
MICB	4277	genome.wustl.edu	36	6	31583214	31583214	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31583214	31583214	G	A	SNP	MICB	NM_005931	human	genbank	54_36p	+1	reviewed	missense	c.951	p.M317I	0.000	NULL	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
DIXDC1	85458	genome.wustl.edu	36	11	111394950	111394950	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	111394950	111394950	G	A	SNP	DIXDC1	ENST00000389821	human	ensembl	54_36p	+1	known	missense	c.2029	p.E677K	1.000	HMMPfam_DIX,HMMSmart_SM00021	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_DIX,HMMSmart_SM00021	-	no_errors
HKDC1	80201	genome.wustl.edu	36	10	70662808	70662808	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	70662808	70662808	T	A	SNP	HKDC1	NM_025130	human	genbank	54_36p	+1	validated	missense	c.408	p.D136E	0.956	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain	HMMPfam_Hexokinase_1,superfamily_Actin-like ATPase domain,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES	-	no_errors
ENSG00000214433	0	genome.wustl.edu	36	15	88638959	88638959	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88638959	88638959	C	T	SNP	ENSG00000214433	ENST00000338706	human	ensembl	54_36p	+1	known	silent	c.123	p.P41	0.031	NULL	NULL	-	no_start_codon
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Verified	Valid	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q-check	1	HMMPfam_Iso_dh	HMMPfam_Iso_dh;superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	NA
ACTL8	81569	genome.wustl.edu	36	1	18024889	18024889	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	18024889	18024889	C	G	SNP	ACTL8	NM_030812	human	genbank	54_36p	+1	provisional	missense	c.389	p.A130G	0.941	superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN	superfamily_SSF53067,HMMPfam_Actin,HMMSmart_ACTIN	-	no_errors
CCDC127	133957	genome.wustl.edu	36	5	258950	258950	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	258950	258950	C	T	SNP	CCDC127	NM_145265	human	genbank	54_36p	-1	provisional	missense	c.245	p.R82Q	1.000	NULL	NULL	-	no_errors
MDN1	23195	genome.wustl.edu	36	6	90455155	90455155	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	90455155	90455155	A	G	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.11117	p.M3706T	0.033	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors
RRM1	6240	genome.wustl.edu	36	11	4083980	4083980	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	4083980	4083980	C	T	SNP	RRM1	NM_001033	human	genbank	54_36p	+1	reviewed	silent	c.237	p.A79	0.974	HMMPfam_ATP-cone,superfamily_Ribonucleo_red_N	HMMPfam_ATP-cone,superfamily_Ribonucleo_red_N,HMMPfam_Ribonuc_red_lgN,HMMPfam_Ribonuc_red_lgC,superfamily_SSF51998,PatternScan_RIBORED_LARGE	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179189819	179189819	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179189819	179189819	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	silent	c.35988	p.L11996	0.988	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
FCAMR	83953	genome.wustl.edu	36	1	205202402	205202402	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	205202402	205202402	C	T	SNP	FCAMR	ENST00000367087	human	ensembl	54_36p	-1	known	missense	c.359	p.R120H	0.916	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
RLN3	117579	genome.wustl.edu	36	19	14002569	14002569	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	14002569	14002569	G	A	SNP	RLN3	NM_080864	human	genbank	54_36p	+1	validated	missense	c.238	p.E80K	0.000	superfamily_Insulin-like,HMMSmart_IlGF	superfamily_Insulin-like,HMMSmart_IlGF,PatternScan_INSULIN	-	no_errors
POLR1A	25885	genome.wustl.edu	36	2	86124811	86124811	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	86124811	86124811	G	A	SNP	POLR1A	NM_015425	human	genbank	54_36p	-1	validated	nonsense	c.3097	p.Q1033*	1.000	HMMPfam_RNA_pol_Rpb1_5,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
BTBD1	53339	genome.wustl.edu	36	15	81477911	81477911	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	81477911	81477911	G	A	SNP	BTBD1	NM_025238	human	genbank	54_36p	-1	reviewed	missense	c.1361	p.T454I	0.998	HMMPfam_PHR	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,HMMPfam_PHR	-	no_errors
LMAN2	10960	genome.wustl.edu	36	5	176711060	176711060	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	176711060	176711060	T	A	SNP	LMAN2	NM_006816	human	genbank	54_36p	-1	reviewed	missense	c.195	p.Q65H	0.999	superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like	superfamily_ConA_like_lec_gl,HMMPfam_Lectin_leg-like	-	no_errors
MYH13	8735	genome.wustl.edu	36	17	10176241	10176241	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	10176241	10176241	G	A	SNP	MYH13	NM_003802	human	genbank	54_36p	-1	validated	missense	c.2198	p.A733V	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CXCL16	58191	genome.wustl.edu	36	17	4588863	4588863	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4588863	4588863	G	T	SNP	CXCL16	NM_001100812	human	genbank	54_36p	-1	validated	missense	c.238	p.H80N	0.000	NULL	NULL	-	no_errors
BCL7B	9275	genome.wustl.edu	36	7	72609777	72609777	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	72609777	72609777	G	A	SNP	BCL7B	NM_001707	human	genbank	54_36p	-1	reviewed	missense	c.68	p.A23V	1.000	HMMPfam_BCL_N	HMMPfam_BCL_N	-	no_errors
SLC22A7	10864	genome.wustl.edu	36	6	43375704	43375704	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43375704	43375704	T	A	SNP	SLC22A7	NM_153320	human	genbank	54_36p	+1	reviewed	missense	c.749	p.V250D	0.996	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
MYOM3	127294	genome.wustl.edu	36	1	24280423	24280423	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	24280423	24280423	C	T	SNP	MYOM3	NM_152372	human	genbank	54_36p	-1	validated	nonsense	c.2391	p.W797*	1.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,PatternScan_EF_HAND_1,superfamily_Immunoglobulin	-	no_errors
UBA1	7317	genome.wustl.edu	36	X	46943920	46943920	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	46943920	46943920	C	T	SNP	UBA1	NM_003334	human	genbank	54_36p	+1	reviewed	missense	c.443	p.T148I	1.000	superfamily_MoeB,HMMPfam_ThiF	superfamily_MoeB,HMMPfam_ThiF,PatternScan_UBIQUITIN_ACTIVAT_1,HMMPfam_UBA_e1_thiolCys,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBACT,HMMPfam_UBA_e1_C	-	no_errors
CNOT10	25904	genome.wustl.edu	36	3	32729812	32729812	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	32729812	32729812	G	A	SNP	CNOT10	NM_015442	human	genbank	54_36p	+1	provisional	missense	c.520	p.V174I	1.000	superfamily_TPR-like	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	-	no_errors
RORC	6097	genome.wustl.edu	36	1	150052066	150052066	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150052066	150052066	G	A	SNP	RORC	NM_005060	human	genbank	54_36p	-1	reviewed	silent	c.1266	p.A422	0.425	superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	HMMSmart_SM00399,HMMPfam_zf-C4,superfamily_Glucocorticoid receptor-like (DNA-binding domain),PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
MPI	4351	genome.wustl.edu	36	15	72972145	72972145	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72972145	72972145	C	T	SNP	MPI	NM_002435	human	genbank	54_36p	+1	reviewed	nonsense	c.436	p.Q146*	1.000	superfamily_RmlC-like cupins,HMMPfam_PMI_typeI	superfamily_RmlC-like cupins,HMMPfam_PMI_typeI,PatternScan_PMI_I_1,PatternScan_PMI_I_2	-	no_errors
SYMPK	8189	genome.wustl.edu	36	19	51016539	51016539	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	51016539	51016539	G	A	SNP	SYMPK	NM_004819	human	genbank	54_36p	-1	reviewed	silent	c.2836	p.L946	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
TUBB4	0	genome.wustl.edu	36	19	6452370	6452370	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	6452370	6452370	C	T	SNP	TUBB4	NM_006087	human	genbank	54_36p	-1	provisional	missense	c.205	p.E69K	1.000	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
SPOCD1	90853	genome.wustl.edu	36	1	32032417	32032417	+	Nonsense_Mutation	SNP	G	G	A	rs74641766		TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	32032417	32032417	G	A	SNP	SPOCD1	NM_144569	human	genbank	54_36p	-1	provisional	nonsense	c.2278	p.Q760*	0.093	NULL	superfamily_Elongation factor TFIIS domain 2,HMMSmart_SM00510,HMMPfam_TFIIS_M,HMMPfam_SPOC	-	no_errors
ARNTL2	56938	genome.wustl.edu	36	12	27412513	27412513	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	27412513	27412513	G	A	SNP	ARNTL2	NM_020183	human	genbank	54_36p	+1	provisional	missense	c.83	p.R28H	0.001	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353,HMMPfam_PAS,HMMSmart_SM00091,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3	-	no_errors
C1S	716	genome.wustl.edu	36	12	7044182	7044182	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	7044182	7044182	G	A	SNP	C1S	NM_001734	human	genbank	54_36p	+1	reviewed	missense	c.971	p.G324E	1.000	superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP	PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_TRYPSIN_HIS,HMMSmart_CUB,HMMPfam_CUB,superfamily_CUB,superfamily_SSF57196,PatternScan_EGF_CA,HMMSmart_EGF_CA,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,superfamily_Complement_control_module,HMMPfam_Sushi,HMMSmart_CCP,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_SER	-	no_errors
PTRH1	138428	genome.wustl.edu	36	9	129516206	129516206	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	129516206	129516206	C	T	SNP	PTRH1	NM_001002913	human	genbank	54_36p	-1	provisional	silent	c.639	p.G213	0.004	NULL	PatternScan_PEPT_TRNA_HYDROL_1,superfamily_Pept_tRNA_hydro,HMMPfam_Pept_tRNA_hydro,PatternScan_PEPT_TRNA_HYDROL_2	-	no_errors
GRIK4	2900	genome.wustl.edu	36	11	120328775	120328775	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	120328775	120328775	G	A	SNP	GRIK4	NM_014619	human	genbank	54_36p	+1	reviewed	missense	c.1592	p.G531E	1.000	HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HIVEP3	59269	genome.wustl.edu	36	1	41756733	41756733	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	41756733	41756733	C	G	SNP	HIVEP3	NM_024503	human	genbank	54_36p	-1	validated	missense	c.5397	p.K1799N	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
LOC729141	729141	genome.wustl.edu	36	2	188800678	188800678	+	RNA	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	188800678	188800678	A	G	SNP	LOC729141	XR_015463	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MUC17	140453	genome.wustl.edu	36	7	100462136	100462136	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100462136	100462136	C	A	SNP	MUC17	NM_001040105	human	genbank	54_36p	+1	provisional	missense	c.719	p.P240H	0.022	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
LILRB5	10990	genome.wustl.edu	36	19	59448069	59448069	+	Silent	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59448069	59448069	T	A	SNP	LILRB5	NM_001081442	human	genbank	54_36p	-1	reviewed	silent	c.1548	p.P516	0.003	NULL	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
OR11H12	440153	genome.wustl.edu	36	14	18447859	18447859	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	18447859	18447859	T	C	SNP	OR11H12	NM_001013354	human	genbank	54_36p	+1	provisional	missense	c.266	p.V89A	0.000	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
COL2A1	1280	genome.wustl.edu	36	12	46655561	46655561	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	46655561	46655561	T	C	SNP	COL2A1	NM_001844	human	genbank	54_36p	-1	reviewed	missense	c.3692	p.K1231R	1.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
PLXNA1	5361	genome.wustl.edu	36	3	128231851	128231851	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	128231851	128231851	C	T	SNP	PLXNA1	NM_032242	human	genbank	54_36p	+1	validated	silent	c.5068	p.L1690	0.996	HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,HMMSmart_SM00429,superfamily_E set domains,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
HYAL2	8692	genome.wustl.edu	36	3	50330965	50330965	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	50330965	50330965	G	A	SNP	HYAL2	NM_003773	human	genbank	54_36p	-1	reviewed	nonsense	c.1021	p.Q341*	0.976	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_56,superfamily_(Trans)glycosidases,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
FMO3	2328	genome.wustl.edu	36	1	169343863	169343863	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	169343863	169343863	C	T	SNP	FMO3	NM_001002294	human	genbank	54_36p	+1	validated	silent	c.504	p.G168	0.265	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FMO-like	-	no_errors
SSH3	54961	genome.wustl.edu	36	11	66830988	66830988	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66830988	66830988	G	T	SNP	SSH3	NM_017857	human	genbank	54_36p	+1	provisional	missense	c.443	p.G148V	0.997	NULL	HMMPfam_DEK_C,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_DSPc,HMMSmart_SM00195,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ZSCAN23	222696	genome.wustl.edu	36	6	28510459	28510459	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	28510459	28510459	C	T	SNP	ZSCAN23	ENST00000289788	human	ensembl	54_36p	-1	known	missense	c.932	p.G311D	1.000	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	HMMPfam_SCAN,HMMSmart_SCAN,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
TMTC1	83857	genome.wustl.edu	36	12	29556309	29556309	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	29556309	29556309	C	T	SNP	TMTC1	NM_175861	human	genbank	54_36p	-1	provisional	silent	c.2118	p.V706	0.001	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028	HMMPfam_DUF1736,HMMSmart_SM00386,superfamily_Protein prenylyltransferase,HMMPfam_TPR_2,HMMSmart_SM00028,HMMPfam_TPR_1,superfamily_TPR-like	-	no_errors
KIF3C	3797	genome.wustl.edu	36	2	26031972	26031972	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26031972	26031972	C	T	SNP	KIF3C	NM_002254	human	genbank	54_36p	-1	validated	missense	c.1712	p.R571Q	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00129,HMMPfam_Kinesin,PatternScan_RIBOSOMAL_L2,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
CNOT3	4849	genome.wustl.edu	36	19	59341245	59341245	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59341245	59341245	A	G	SNP	CNOT3	NM_014516	human	genbank	54_36p	+1	validated	missense	c.583	p.I195V	1.000	HMMPfam_Not3	HMMPfam_Not3,HMMPfam_NOT2_3_5	-	no_errors
SMG5	23381	genome.wustl.edu	36	1	154504541	154504541	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154504541	154504541	C	G	SNP	SMG5	NM_015327	human	genbank	54_36p	-1	validated	missense	c.897	p.Q299H	1.000	NULL	HMMPfam_EST1,HMMSmart_PINc	-	no_errors
SLC39A7	7922	genome.wustl.edu	36	6	33278424	33278424	+	Silent	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	33278424	33278424	T	A	SNP	SLC39A7	NM_001077516	human	genbank	54_36p	+1	validated	silent	c.909	p.P303	0.578	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
USP34	9736	genome.wustl.edu	36	2	61301042	61301042	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	61301042	61301042	G	A	SNP	USP34	NM_014709	human	genbank	54_36p	-1	validated	nonsense	c.7954	p.R2652*	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
VTCN1	79679	genome.wustl.edu	36	1	117501158	117501158	+	Splice_Site	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	117501158	117501158	T	C	SNP	VTCN1	ENST00000369456	human	ensembl	54_36p	-1	known	splice_site	c.95-2	e4-2	0.013	-	-	-	no_start_codon
WISP1	8840	genome.wustl.edu	36	8	134306972	134306972	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	134306972	134306972	G	A	SNP	WISP1	NM_003882	human	genbank	54_36p	+1	reviewed	silent	c.768	p.L256	1.000	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1	HMMSmart_SM00121,HMMPfam_IGFBP,PatternScan_IGFBP_N_1,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_Cys_knot,HMMSmart_SM00041,PatternScan_CTCK_1	-	no_errors
uc001wcu.2	0	genome.wustl.edu	36	14	21546187	21546187	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	21546187	21546187	A	T	SNP	uc001wcu.2	ENST00000390447	human	ensembl	54_36p	+1	known	missense	c.277	p.S93C	0.001	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
PCDHB8	56128	genome.wustl.edu	36	5	140539940	140539940	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140539940	140539940	T	C	SNP	PCDHB8	NM_019120	human	genbank	54_36p	+1	reviewed	missense	c.2141	p.L714P	0.588	NULL	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
TRANK1	9881	genome.wustl.edu	36	3	36848146	36848146	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	36848146	36848146	C	T	SNP	LBA1	NM_014831	human	genbank	54_36p	-1	validated	missense	c.6150	p.M2050I	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
uc004fbe.1	0	genome.wustl.edu	36	X	139623571	139623571	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	139623571	139623571	C	A	SNP	uc004fbe.1	ENST00000370535	human	ensembl	54_36p	+1	known	missense	c.269	p.P90H	0.000	NULL	NULL	-	no_errors
TAF6L	10629	genome.wustl.edu	36	11	62306270	62306270	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62306270	62306270	T	C	SNP	TAF6L	NM_006473	human	genbank	54_36p	+1	reviewed	missense	c.716	p.V239A	1.000	NULL	superfamily_Histone-fold,HMMPfam_TAF,HMMSmart_SM00803,HMMPfam_DUF1546	-	no_errors
DLGAP2	9228	genome.wustl.edu	36	8	1613910	1613910	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	1613910	1613910	G	A	SNP	DLGAP2	NM_004745	human	genbank	54_36p	+1	reviewed	silent	c.2172	p.Q724	1.000	HMMPfam_GKAP	HMMPfam_GKAP	-	no_errors
TRPV3	162514	genome.wustl.edu	36	17	3380129	3380129	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	3380129	3380129	A	T	SNP	TRPV3	NM_145068	human	genbank	54_36p	-1	reviewed	missense	c.1184	p.V395E	0.998	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,HMMPfam_Ion_trans	-	no_errors
APC	324	genome.wustl.edu	36	5	112130941	112130941	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	112130941	112130941	G	A	SNP	APC	NM_000038	human	genbank	54_36p	+1	reviewed	missense	c.377	p.G126E	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm,HMMPfam_APC_15aa,HMMPfam_APC_crr,HMMPfam_SAMP,HMMPfam_APC_basic,HMMPfam_EB1_binding	-	no_errors
GPD2	2820	genome.wustl.edu	36	2	157114384	157114384	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	157114384	157114384	G	C	SNP	GPD2	NM_000408	human	genbank	54_36p	+1	validated	missense	c.680	p.R227P	1.000	HMMPfam_DAO,superfamily_FAD/NAD(P)-binding domain	PatternScan_FAD_G3PDH_1,PatternScan_FAD_G3PDH_2,HMMSmart_SM00054,HMMPfam_DAO,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand,superfamily_FAD/NAD(P)-binding domain,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
PIK3C2B	5287	genome.wustl.edu	36	1	202691710	202691711	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	202691710	202691711	-	G	INS	PIK3C2B	NM_002646	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1840_1839	p.G613fs	0.934:0.507	NULL	superfamily_Ubiquitin-like,HMMPfam_PI3K_rbd,HMMSmart_SM00144,HMMSmart_SM00142,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PI3K_C2,superfamily_ARM repeat,HMMSmart_SM00145,HMMPfam_PI3Ka,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMSmart_SM00239,HMMPfam_C2	-	no_errors
SLC7A9	11136	genome.wustl.edu	36	19	38047043	38047043	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38047043	38047043	A	G	SNP	SLC7A9	NM_014270	human	genbank	54_36p	-1	reviewed	missense	c.277	p.S93P	1.000	HMMPfam_AA_permease	HMMPfam_AA_permease	-	no_errors
GPRIN1	114787	genome.wustl.edu	36	5	175958158	175958158	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	175958158	175958158	G	C	SNP	GPRIN1	NM_052899	human	genbank	54_36p	-1	validated	missense	c.1284	p.C428W	0.005	NULL	NULL	-	no_errors
ZNF8	7554	genome.wustl.edu	36	19	63497756	63497756	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	63497756	63497756	A	G	SNP	ZNF8	NM_021089	human	genbank	54_36p	+1	validated	missense	c.770	p.Y257C	0.231	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
RUVBL1	8607	genome.wustl.edu	36	3	129282882	129282882	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	129282882	129282882	G	A	SNP	RUVBL1	NM_003707	human	genbank	54_36p	-1	validated	silent	c.1272	p.S424	0.987	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_TIP49	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,HMMPfam_TIP49	-	no_errors
DGKK	139189	genome.wustl.edu	36	X	50130229	50130229	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	50130229	50130229	C	T	SNP	DGKK	NM_001013742	human	genbank	54_36p	-1	validated	nonsense	c.3671	p.W1224*	0.950	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,HMMPfam_DAGK_cat,HMMSmart_SM00046,HMMPfam_DAGK_acc,HMMSmart_SM00045	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CD5L	922	genome.wustl.edu	36	1	156072489	156072489	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	156072489	156072489	C	T	SNP	CD5L	NM_005894	human	genbank	54_36p	-1	validated	missense	c.136	p.G46S	1.000	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	superfamily_SRCR-like,HMMSmart_SM00202,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_errors
ACO1	48	genome.wustl.edu	36	9	32438985	32438985	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	32438985	32438985	G	T	SNP	ACO1	NM_002197	human	genbank	54_36p	+1	reviewed	missense	c.2462	p.G821V	1.000	superfamily_Aconitase,HMMPfam_Aconitase_C	superfamily_Aconitase iron-sulfur domain,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase,HMMPfam_Aconitase_C	-	no_errors
AHR	196	genome.wustl.edu	36	7	17349172	17349172	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	17349172	17349172	G	A	SNP	AHR	NM_001621	human	genbank	54_36p	+1	reviewed	missense	c.2506	p.A836T	0.991	NULL	HMMSmart_SM00353,HMMPfam_HLH,HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS_3,HMMSmart_SM00086	-	no_errors
RFX2	5990	genome.wustl.edu	36	19	5991139	5991139	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	5991139	5991139	G	A	SNP	RFX2	NM_000635	human	genbank	54_36p	-1	reviewed	missense	c.374	p.P125L	0.054	HMMPfam_RFX1_trans_act	"HMMPfam_RFX1_trans_act,HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
NTNG1	22854	genome.wustl.edu	36	1	107739416	107739416	+	Silent	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	107739416	107739416	C	A	SNP	NTNG1	NM_014917	human	genbank	54_36p	+1	provisional	silent	c.1005	p.G335	1.000	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196	HMMPfam_Laminin_N,HMMSmart_LamNT,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,HMMSmart_EGF,HMMPfam_EGF_2	-	no_errors
DPEP3	64180	genome.wustl.edu	36	16	66567333	66567333	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66567333	66567333	G	C	SNP	DPEP3	NM_022357	human	genbank	54_36p	-1	reviewed	missense	c.1378	p.H460D	0.570	superfamily_Metallo-dependent hydrolases	PatternScan_RENAL_DIPEPTIDASE_1,HMMPfam_Peptidase_M19,superfamily_Metallo-dependent hydrolases	-	no_errors
EXOC4	60412	genome.wustl.edu	36	7	132610460	132610460	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	132610460	132610460	A	G	SNP	EXOC4	NM_021807	human	genbank	54_36p	+1	reviewed	missense	c.270	p.I90M	0.998	HMMPfam_Sec8_exocyst	HMMPfam_Sec8_exocyst,PatternScan_DEAH_ATP_HELICASE	-	no_errors
TRAF1	7185	genome.wustl.edu	36	9	122715819	122715819	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	122715819	122715819	G	T	SNP	TRAF1	NM_005658	human	genbank	54_36p	-1	reviewed	missense	c.313	p.Q105K	0.859	NULL	superfamily_TRAF domain-like,HMMSmart_SM00061,HMMPfam_MATH	-	no_errors
WDFY3	23001	genome.wustl.edu	36	4	85941901	85941901	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	85941901	85941901	G	A	SNP	WDFY3	NM_014991	human	genbank	54_36p	-1	reviewed	silent	c.2748	p.D916	1.000	NULL	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cyclin-like,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,HMMSmart_SM00064,HMMPfam_FYVE,superfamily_FYVE/PHD zinc finger	-	no_errors
NF1	4763	genome.wustl.edu	36	17	26580284	26580284	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	26580284	26580284	G	A	SNP	NF1	NM_001042492	human	genbank	54_36p	+1	reviewed	missense	c.2525	p.G842D	1.000	NULL	HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,HMMSmart_SM00516	-	no_errors
TRRAP	8295	genome.wustl.edu	36	7	98440845	98440845	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	98440845	98440845	G	A	SNP	TRRAP	NM_003496	human	genbank	54_36p	+1	validated	missense	c.10562	p.R3521H	1.000	superfamily_ARM repeat,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146	superfamily_ARM repeat,PatternScan_COPPER_BLUE,superfamily_Protein prenylyltransferase,HMMPfam_FAT,superfamily_TPR-like,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC	-	no_errors
ZBTB3	79842	genome.wustl.edu	36	11	62276749	62276749	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62276749	62276749	G	A	SNP	ZBTB3	NM_024784	human	genbank	54_36p	-1	validated	nonsense	c.1114	p.Q372*	0.370	NULL	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
SLC6A15	55117	genome.wustl.edu	36	12	83790536	83790536	+	Silent	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	83790536	83790536	A	G	SNP	SLC6A15	NM_182767	human	genbank	54_36p	-1	validated	silent	c.1278	p.C426	0.119	HMMPfam_SNF	HMMPfam_SNF,PatternScan_NA_NEUROTRAN_SYMP_1,PatternScan_NA_NEUROTRAN_SYMP_2	-	no_errors
IQCF1	132141	genome.wustl.edu	36	3	51904222	51904222	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	51904222	51904222	C	-	DEL	IQCF1	NM_152397	human	genbank	54_36p	-1	provisional	frame_shift_del	c.342	p.Q115fs	0.117	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00015,HMMPfam_IQ,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NRTN	4902	genome.wustl.edu	36	19	5775196	5775196	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	5775196	5775196	C	T	SNP	NRTN	NM_004558	human	genbank	54_36p	+1	reviewed	missense	c.20	p.A7V	1.000	NULL	HMMPfam_TGF_beta,superfamily_Cystine-knot cytokines	-	no_errors
DNAJB2	3300	genome.wustl.edu	36	2	219857615	219857615	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219857615	219857615	G	T	SNP	DNAJB2	NM_006736	human	genbank	54_36p	+1	validated	missense	c.637	p.A213S	1.000	HMMSmart_SM00726	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,PatternScan_DNAJ_1,HMMSmart_SM00726,HMMPfam_UIM	-	no_errors
BCAR3	8412	genome.wustl.edu	36	1	93809918	93809918	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	93809918	93809918	G	T	SNP	BCAR3	NM_003567	human	genbank	54_36p	-1	reviewed	missense	c.1871	p.A624E	0.961	superfamily_Ras GEF,HMMSmart_SM00147	superfamily_Ras GEF,HMMSmart_SM00252,HMMPfam_SH2,HMMSmart_SM00147	-	no_errors
ACO2	50	genome.wustl.edu	36	22	40233857	40233857	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	40233857	40233857	C	G	SNP	ACO2	NM_001098	human	genbank	54_36p	+1	reviewed	missense	c.290	p.A97G	1.000	superfamily_Aconitase_N,HMMPfam_Aconitase	superfamily_Aconitase_N,HMMPfam_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2,superfamily_Aconitase/3IPM_dehydase_swvl,HMMPfam_Aconitase_C	-	no_errors
COL22A1	169044	genome.wustl.edu	36	8	139766717	139766717	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	139766717	139766717	G	A	SNP	COL22A1	NM_152888	human	genbank	54_36p	-1	validated	silent	c.2883	p.G961	0.922	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
MDN1	23195	genome.wustl.edu	36	6	90525340	90525340	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	90525340	90525340	C	T	SNP	MDN1	NM_014611	human	genbank	54_36p	-1	provisional	missense	c.2521	p.A841T	1.000	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00327,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_vWA-like	-	no_errors
OR51I2	390064	genome.wustl.edu	36	11	5431486	5431486	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5431486	5431486	C	T	SNP	OR51I2	NM_001004754	human	genbank	54_36p	+1	provisional	silent	c.192	p.S64	0.208	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CPNE3	8895	genome.wustl.edu	36	8	87632420	87632420	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	87632420	87632420	C	T	SNP	CPNE3	NM_003909	human	genbank	54_36p	+1	reviewed	silent	c.1044	p.G348	0.999	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300	HMMPfam_C2,HMMSmart_C2,HMMSmart_VWA,superfamily_C2_CaLB,HMMPfam_Copine,superfamily_SSF53300	-	no_errors
ANKRD50	57182	genome.wustl.edu	36	4	125810533	125810533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	125810533	125810533	C	T	SNP	ANKRD50	NM_020337	human	genbank	54_36p	-1	validated	missense	c.3349	p.E1117K	1.000	superfamily_ANK	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
ELP2	55250	genome.wustl.edu	36	18	32005023	32005023	+	Silent	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	32005023	32005023	A	G	SNP	ELP2	NM_018255	human	genbank	54_36p	+1	provisional	silent	c.2226	p.V742	0.960	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
SEC23A	10484	genome.wustl.edu	36	14	38594189	38594189	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	38594189	38594189	G	A	SNP	SEC23A	NM_006364	human	genbank	54_36p	-1	reviewed	missense	c.1568	p.A523V	1.000	superfamily_Sec23_helical,HMMPfam_Sec23_helical	superfamily_SSF81995,superfamily_Znf_Sec23_Sec24,HMMPfam_zf-Sec23_Sec24,HMMPfam_Sec23_trunk,superfamily_SSF53300,HMMPfam_Sec23_BS,superfamily_Sec23_helical,HMMPfam_Sec23_helical,superfamily_SSF82754,HMMPfam_Gelsolin	-	no_errors
FRMPD3	84443	genome.wustl.edu	36	X	106731187	106731187	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	106731187	106731187	G	A	SNP	FRMPD3	XM_042978	human	genbank	54_36p	+1	model	missense	c.3361	p.V1121M	0.854	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
LAP3	51056	genome.wustl.edu	36	4	17207803	17207803	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	17207803	17207803	A	T	SNP	LAP3	NM_015907	human	genbank	54_36p	+1	validated	missense	c.1025	p.K342M	1.000	superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M17	superfamily_Macro domain-like,HMMPfam_Peptidase_M17_N,superfamily_Zn-dependent exopeptidases,HMMPfam_Peptidase_M17,PatternScan_CYTOSOL_AP	-	no_errors
MXRA5	25878	genome.wustl.edu	36	X	3245264	3245264	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	3245264	3245264	G	A	SNP	MXRA5	NM_015419	human	genbank	54_36p	-1	validated	missense	c.6458	p.P2153L	1.000	HMMPfam_I-set,superfamily_Immunoglobulin,HMMSmart_SM00409	HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00082,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set	-	no_errors
MED12	9968	genome.wustl.edu	36	X	70256004	70256004	+	Silent	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	70256004	70256004	T	C	SNP	MED12	NM_005120	human	genbank	54_36p	+1	validated	silent	c.156	p.S52	1.000	NULL	HMMPfam_Med12	-	no_errors
NRXN2	9379	genome.wustl.edu	36	11	64146916	64146916	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64146916	64146916	G	T	SNP	NRXN2	NM_015080	human	genbank	54_36p	-1	reviewed	missense	c.4058	p.T1353K	1.000	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00294	-	no_errors
NGFR	4804	genome.wustl.edu	36	17	44945127	44945127	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	44945127	44945127	G	A	SNP	NGFR	NM_002507	human	genbank	54_36p	+1	reviewed	silent	c.1041	p.V347	0.998	HMMPfam_Death,HMMSmart_SM00005,superfamily_DEATH domain	HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,PatternScan_LIPASE_SER,superfamily_DEATH domain,PatternScan_EGF_2,superfamily_TNF receptor-like	-	no_errors
SLC24A4	123041	genome.wustl.edu	36	14	92028293	92028293	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	92028293	92028293	C	T	SNP	SLC24A4	NM_153646	human	genbank	54_36p	+1	validated	silent	c.1621	p.L541	0.940	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors
LOC643932	643932	genome.wustl.edu	36	5	78616032	78616032	+	RNA	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	78616032	78616032	T	C	SNP	LOC643932	XR_017289	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SPTBN2	6712	genome.wustl.edu	36	11	66229429	66229429	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66229429	66229429	C	T	SNP	SPTBN2	NM_006946	human	genbank	54_36p	-1	validated	missense	c.1894	p.A632T	0.001	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
KIF21B	23046	genome.wustl.edu	36	1	199226872	199226872	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	199226872	199226872	G	A	SNP	KIF21B	NM_017596	human	genbank	54_36p	-1	provisional	missense	c.2483	p.P828L	1.000	superfamily_WD40_like	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_WD40_like,superfamily_Prefoldin,HMMSmart_WD40,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
RGS16	6004	genome.wustl.edu	36	1	180837882	180837882	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	180837882	180837882	C	T	SNP	RGS16	NM_002928	human	genbank	54_36p	-1	reviewed	missense	c.229	p.A77T	0.978	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	superfamily_Regulator of G-protein signaling RGS,HMMPfam_RGS,HMMSmart_SM00315	-	no_errors
ADCY4	196883	genome.wustl.edu	36	14	23857711	23857711	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23857711	23857711	C	T	SNP	ADCY4	NM_139247	human	genbank	54_36p	-1	reviewed	missense	c.3070	p.G1024S	1.000	HMMSmart_SM00044,HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_Guanylate_cyc,PatternScan_GUANYLATE_CYCLASE_1,HMMPfam_DUF1053	-	no_errors
BMP2K	55589	genome.wustl.edu	36	4	80051971	80051971	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	80051971	80051971	C	T	SNP	BMP2K	NM_198892	human	genbank	54_36p	+1	reviewed	silent	c.3246	p.H1082	0.999	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST	-	no_errors
AMOTL2	51421	genome.wustl.edu	36	3	135567939	135567939	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	135567939	135567939	C	T	SNP	AMOTL2	NM_016201	human	genbank	54_36p	-1	reviewed	silent	c.1062	p.R354	0.999	NULL	NULL	-	no_errors
P2RX7	5027	genome.wustl.edu	36	12	120087605	120087605	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	120087605	120087605	C	A	SNP	P2RX7	NM_002562	human	genbank	54_36p	+1	reviewed	missense	c.596	p.P199H	0.999	HMMPfam_P2X_receptor	HMMPfam_P2X_receptor,PatternScan_P2X_RECEPTOR	-	no_errors
AP1M1	8907	genome.wustl.edu	36	19	16199437	16199437	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16199437	16199437	G	A	SNP	AP1M1	NM_032493	human	genbank	54_36p	+1	reviewed	missense	c.752	p.R251H	1.000	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
SEL1L3	23231	genome.wustl.edu	36	4	25430540	25430540	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	25430540	25430540	T	C	SNP	KIAA0746	NM_015187	human	genbank	54_36p	-1	validated	missense	c.1411	p.R471G	0.000	superfamily_HCP-like	superfamily_HCP-like,HMMSmart_SM00671,HMMPfam_Sel1	-	no_errors
BLNK	29760	genome.wustl.edu	36	10	97949242	97949242	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	97949242	97949242	G	A	SNP	BLNK	ENST00000393898	human	ensembl	54_36p	-1	known	missense	c.1133	p.T378M	0.000	NULL	NULL	-	no_errors
C11orf16	56673	genome.wustl.edu	36	11	8910313	8910313	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	8910313	8910313	G	A	SNP	C11orf16	NM_020643	human	genbank	54_36p	-1	validated	missense	c.119	p.P40L	0.997	NULL	NULL	-	no_errors
MIR451	574411	genome.wustl.edu	36	17	24212582	24212582	+	RNA	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	24212582	24212582	A	G	SNP	MIRN451	ENST00000385059	human	ensembl	54_36p	-1	known	rna	NULL	NULL	0.996	-	-	-	no_errors
CACNA2D3	55799	genome.wustl.edu	36	3	54897061	54897061	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	54897061	54897061	G	A	SNP	CACNA2D3	NM_018398	human	genbank	54_36p	+1	reviewed	missense	c.2092	p.A698T	1.000	NULL	HMMPfam_VWA_N,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_Cache_1	-	no_errors
UBE2G2	7327	genome.wustl.edu	36	21	45021680	45021680	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	45021680	45021680	G	A	SNP	UBE2G2	NM_003343	human	genbank	54_36p	-1	reviewed	missense	c.206	p.P69L	1.000	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors
THRA	7067	genome.wustl.edu	36	17	35494538	35494538	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	35494538	35494538	G	A	SNP	THRA	NM_003250	human	genbank	54_36p	+1	reviewed	missense	c.520	p.A174T	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
BTN1A1	696	genome.wustl.edu	36	6	26609551	26609551	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	26609551	26609551	C	G	SNP	BTN1A1	NM_001732	human	genbank	54_36p	+1	validated	missense	c.58	p.Q20E	0.007	NULL	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00406,HMMPfam_C2-set_2,HMMSmart_SM00589,HMMPfam_SPRY,HMMSmart_SM00449	-	no_errors
CCDC84	338657	genome.wustl.edu	36	11	118374380	118374380	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	118374380	118374380	G	A	SNP	CCDC84	NM_198489	human	genbank	54_36p	+1	provisional	missense	c.151	p.A51T	1.000	NULL	NULL	-	no_errors
EEF2K	29904	genome.wustl.edu	36	16	22176113	22176113	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	22176113	22176113	G	A	SNP	EEF2K	NM_013302	human	genbank	54_36p	+1	reviewed	silent	c.807	p.Q269	1.000	superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase	superfamily_Kinase_like,HMMSmart_Alpha_kinase,HMMPfam_Alpha_kinase,HMMPfam_Sel1,superfamily_SSF81901	-	no_errors
LOC729686	729686	genome.wustl.edu	36	15	70979661	70979661	+	RNA	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	70979661	70979661	A	G	SNP	LOC729686	XR_039774	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
STK10	6793	genome.wustl.edu	36	5	171516361	171516361	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	171516361	171516361	T	C	SNP	STK10	NM_005990	human	genbank	54_36p	-1	reviewed	missense	c.193	p.K65E	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CHD5	26038	genome.wustl.edu	36	1	6111651	6111651	+	Silent	SNP	C	C	T	rs112172872		TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6111651	6111651	C	T	SNP	CHD5	NM_015557	human	genbank	54_36p	-1	provisional	silent	c.3453	p.R1151	0.998	superfamily_SSF52540	PatternScan_CHROMO_1,HMMPfam_CHDNT,superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,HMMSmart_RING,superfamily_Chromodomain-like,HMMSmart_CHROMO,superfamily_SSF52540,HMMPfam_Chromo,HMMSmart_DEXDc,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
WDR96	80217	genome.wustl.edu	36	10	105917441	105917441	+	Silent	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	105917441	105917441	C	G	SNP	C10orf79	NM_025145	human	genbank	54_36p	-1	predicted	silent	c.2736	p.A912	0.970	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like	-	no_errors
ARHGAP40	343578	genome.wustl.edu	36	20	36691029	36691029	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	36691029	36691029	C	T	SNP	C20orf95	XM_293123	human	genbank	54_36p	+1	model	missense	c.445	p.L149F	0.000	NULL	superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
CDHR1	92211	genome.wustl.edu	36	10	85963918	85963918	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	85963918	85963918	C	T	SNP	PCDH21	NM_033100	human	genbank	54_36p	+1	reviewed	missense	c.2141	p.A714V	0.915	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1	-	no_errors
RYR3	6263	genome.wustl.edu	36	15	31629801	31629801	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	31629801	31629801	G	A	SNP	RYR3	NM_001036	human	genbank	54_36p	+1	validated	missense	c.964	p.A322T	0.991	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,HMMPfam_efhand,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SIRT2	22933	genome.wustl.edu	36	19	44081994	44081994	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	44081994	44081994	T	C	SNP	SIRT2	NM_012237	human	genbank	54_36p	-1	reviewed	missense	c.8	p.E3G	1.000	NULL	superfamily_DHS-like NAD/FAD-binding domain,HMMPfam_SIR2	-	no_errors
RNFT2	84900	genome.wustl.edu	36	12	115774102	115774102	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	115774102	115774102	C	A	SNP	RNFT2	ENST00000319176	human	ensembl	54_36p	+1	known	missense	c.666	p.S222R	0.019	NULL	NULL	-	no_errors
AKAP3	10566	genome.wustl.edu	36	12	4606418	4606418	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	4606418	4606418	G	A	SNP	AKAP3	NM_006422	human	genbank	54_36p	-1	reviewed	silent	c.1911	p.P637	0.002	HMMSmart_SM00807,HMMPfam_AKAP_110	HMMSmart_SM00807,HMMPfam_RII_binding_1,HMMPfam_AKAP_110	-	no_errors
SERINC4	619189	genome.wustl.edu	36	15	41874524	41874524	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	41874524	41874524	A	T	SNP	SERINC4	NM_001033517	human	genbank	54_36p	-1	provisional	missense	c.791	p.I264N	0.968	NULL	HMMPfam_Serinc	-	no_errors
SIDT2	51092	genome.wustl.edu	36	11	116555365	116555365	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116555365	116555365	G	A	SNP	SIDT2	NM_001040455	human	genbank	54_36p	+1	validated	missense	c.176	p.R59H	1.000	NULL	NULL	-	no_errors
ZFP64	55734	genome.wustl.edu	36	20	50138360	50138360	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	50138360	50138360	G	A	SNP	ZFP64	NM_199427	human	genbank	54_36p	-1	validated	silent	c.1206	p.T402	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
OR5H6	79295	genome.wustl.edu	36	3	99465857	99465857	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99465857	99465857	C	T	SNP	OR5H6	NM_001005479	human	genbank	54_36p	+1	provisional	silent	c.39	p.C13	0.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OLFML2A	169611	genome.wustl.edu	36	9	126612149	126612149	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	126612149	126612149	C	T	SNP	OLFML2A	NM_182487	human	genbank	54_36p	+1	validated	silent	c.1596	p.V532	1.000	HMMPfam_OLF,HMMSmart_SM00284	HMMPfam_OLF,HMMSmart_SM00284	-	no_errors
PCDHGA9	56107	genome.wustl.edu	36	5	140762786	140762786	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140762786	140762786	C	T	SNP	PCDHGA9	NM_018921	human	genbank	54_36p	+1	reviewed	missense	c.83	p.A28V	0.057	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1	-	no_errors
SLITRK3	22865	genome.wustl.edu	36	3	166389677	166389677	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	166389677	166389677	C	G	SNP	SLITRK3	NM_014926	human	genbank	54_36p	-1	validated	missense	c.1636	p.G546R	0.998	superfamily_SSF52058	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
ZNF831	128611	genome.wustl.edu	36	20	57201268	57201268	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	57201268	57201268	G	T	SNP	ZNF831	NM_178457	human	genbank	54_36p	+1	provisional	missense	c.1799	p.G600V	0.001	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SFRP5	6425	genome.wustl.edu	36	10	99521274	99521274	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	99521274	99521274	C	T	SNP	SFRP5	NM_003015	human	genbank	54_36p	-1	reviewed	missense	c.307	p.D103N	1.000	HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI	HMMPfam_Fz,superfamily_Frizzled_Cys-rich,HMMSmart_FRI,superfamily_TIMP_like,HMMSmart_C345C,HMMPfam_NTR	-	no_errors
MAP2K3	5606	genome.wustl.edu	36	17	21148428	21148428	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	21148428	21148428	G	A	SNP	MAP2K3	NM_145109	human	genbank	54_36p	+1	reviewed	silent	c.666	p.T222	0.546	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
DNAH7	56171	genome.wustl.edu	36	2	196479696	196479696	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	196479696	196479696	T	A	SNP	DNAH7	NM_018897	human	genbank	54_36p	-1	validated	missense	c.4267	p.T1423S	0.958	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,PatternScan_EF_HAND_1,HMMPfam_Dynein_heavy,PatternScan_ADH_SHORT	-	no_errors
RHOC	389	genome.wustl.edu	36	1	113046749	113046749	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	113046749	113046749	G	A	SNP	RHOC	NM_001042678	human	genbank	54_36p	-1	reviewed	nonsense	c.367	p.Q123*	0.999	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SEPN1	57190	genome.wustl.edu	36	1	26013218	26013218	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	26013218	26013218	C	T	SNP	SEPN1	ENST00000354177	human	ensembl	54_36p	+1	known	missense	c.1462	p.P488S	1.000	NULL	NULL	-	no_errors
ARHGEF18	23370	genome.wustl.edu	36	19	7417984	7417984	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	7417984	7417984	G	A	SNP	ARHGEF18	NM_015318	human	genbank	54_36p	+1	reviewed	missense	c.629	p.G210D	0.894	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
TFEB	7942	genome.wustl.edu	36	6	41762852	41762852	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	41762852	41762852	C	T	SNP	TFEB	NM_007162	human	genbank	54_36p	-1	provisional	missense	c.761	p.R254H	1.000	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
ZFP64	55734	genome.wustl.edu	36	20	50138567	50138567	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	50138567	50138567	C	G	SNP	ZFP64	NM_199427	human	genbank	54_36p	-1	validated	missense	c.999	p.E333D	0.997	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
KDR	3791	genome.wustl.edu	36	4	55650951	55650951	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	55650951	55650951	C	T	SNP	KDR	NM_002253	human	genbank	54_36p	-1	validated	missense	c.3121	p.V1041M	1.000	superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc	superfamily_SSF48726,HMMSmart_IG,HMMPfam_V-set,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
RHOC	389	genome.wustl.edu	36	1	113045707	113045707	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	113045707	113045707	C	T	SNP	RHOC	NM_001042678	human	genbank	54_36p	-1	reviewed	missense	c.560	p.R187Q	0.994	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00175,HMMSmart_SM00173,HMMSmart_SM00174	-	no_errors
ROM1	6094	genome.wustl.edu	36	11	62137366	62137366	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62137366	62137366	C	T	SNP	ROM1	NM_000327	human	genbank	54_36p	+1	reviewed	missense	c.37	p.P13S	0.985	NULL	HMMPfam_Tetraspannin,superfamily_Tetraspanin,PatternScan_RDS_ROM1	-	no_errors
SLC25A26	115286	genome.wustl.edu	36	3	66496014	66496014	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	66496014	66496014	G	T	SNP	SLC25A26	ENST00000336733	human	ensembl	54_36p	+1	known	missense	c.275	p.W92L	1.000	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	superfamily_Mitoch_carrier,HMMPfam_Mito_carr	-	no_errors
SMAD3	4088	genome.wustl.edu	36	15	65244748	65244748	+	Silent	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	65244748	65244748	A	G	SNP	SMAD3	NM_005902	human	genbank	54_36p	+1	validated	silent	c.504	p.A168	0.984	NULL	superfamily_SMAD MH1 domain,HMMSmart_SM00523,HMMPfam_MH1,superfamily_SMAD/FHA domain,HMMPfam_MH2,HMMSmart_SM00524	-	no_errors
RBP3	5949	genome.wustl.edu	36	10	48005895	48005895	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	48005895	48005895	C	T	SNP	RBP3	NM_002900	human	genbank	54_36p	-1	reviewed	nonsense	c.3203	p.W1068*	1.000	superfamily_ClpP/crotonase,HMMSmart_SM00245,HMMPfam_Peptidase_S41	superfamily_ClpP/crotonase,HMMSmart_SM00245,HMMPfam_Peptidase_S41	-	no_errors
MAGED1	9500	genome.wustl.edu	36	X	51658163	51658163	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	51658163	51658163	G	A	SNP	MAGED1	NM_001005333	human	genbank	54_36p	+1	reviewed	missense	c.1949	p.G650E	1.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
SESN2	83667	genome.wustl.edu	36	1	28471529	28471529	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	28471529	28471529	C	T	SNP	SESN2	NM_031459	human	genbank	54_36p	+1	reviewed	missense	c.502	p.H168Y	1.000	HMMPfam_PA26	HMMPfam_PA26,superfamily_SSF69118	-	no_errors
LOC645294	645294	genome.wustl.edu	36	17	20615202	20615202	+	Splice_Site	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	20615202	20615202	A	G	SNP	LOC645294	XR_016910	human	genbank	54_36p	-1	model	splice_site	c.NULL	NULL	1.000	-	-	-	pseudogene
DNAH9	1770	genome.wustl.edu	36	17	11698411	11698411	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	11698411	11698411	G	T	SNP	DNAH9	NM_001372	human	genbank	54_36p	+1	reviewed	missense	c.9874	p.A3292S	1.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LRRC17	10234	genome.wustl.edu	36	7	102361762	102361762	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	102361762	102361762	G	A	SNP	LRRC17	NM_001031692	human	genbank	54_36p	+1	provisional	missense	c.166	p.V56M	0.596	superfamily_RNI-like	superfamily_RNI-like,HMMSmart_SM00369,HMMSmart_SM00365,HMMPfam_LRR_1,HMMSmart_SM00082	-	no_errors
B4GALT7	11285	genome.wustl.edu	36	5	176966993	176966993	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	176966993	176966993	G	A	SNP	B4GALT7	NM_007255	human	genbank	54_36p	+1	reviewed	silent	c.498	p.L166	1.000	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Galactosyl_T_2	-	no_errors
CD72	971	genome.wustl.edu	36	9	35608291	35608291	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35608291	35608291	C	G	SNP	CD72	NM_001782	human	genbank	54_36p	-1	validated	missense	c.10	p.A4P	0.885	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
PROM2	150696	genome.wustl.edu	36	2	95318021	95318021	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	95318021	95318021	G	A	SNP	PROM2	NM_144707	human	genbank	54_36p	+1	provisional	missense	c.2398	p.V800I	0.992	HMMPfam_Prominin	HMMPfam_Prominin,PatternScan_PA2_HIS	-	no_errors
SURF1	6834	genome.wustl.edu	36	9	135210509	135210509	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	135210509	135210509	C	T	SNP	SURF1	NM_003172	human	genbank	54_36p	-1	reviewed	missense	c.431	p.R144Q	0.923	HMMPfam_SURF1	HMMPfam_SURF1	-	no_errors
ADAMTS4	9507	genome.wustl.edu	36	1	159433202	159433202	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	159433202	159433202	C	T	SNP	ADAMTS4	NM_005099	human	genbank	54_36p	-1	reviewed	silent	c.726	p.L242	1.000	"superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin"	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,HMMSmart_SM00608,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
KIAA1958	158405	genome.wustl.edu	36	9	114420471	114420471	+	Silent	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	114420471	114420471	C	T	SNP	KIAA1958	ENST00000374244	human	ensembl	54_36p	+1	known	silent	c.1671	p.C557	1.000	NULL	NULL	-	no_errors
PIGU	128869	genome.wustl.edu	36	20	32708677	32708677	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	32708677	32708677	C	A	SNP	PIGU	NM_080476	human	genbank	54_36p	-1	reviewed	missense	c.163	p.V55L	1.000	NULL	HMMPfam_PIG-U	-	no_errors
uc001omt.2	0	genome.wustl.edu	36	11	67323430	67323430	+	Silent	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	67323430	67323430	G	A	SNP	uc001omt.2	ENST00000359244	human	ensembl	54_36p	-1	known	silent	c.252	p.S84	1.000	NULL	NULL	-	no_errors
TEX19	400629	genome.wustl.edu	36	17	77913337	77913337	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	77913337	77913337	C	T	SNP	FLJ35767	NM_207459	human	genbank	54_36p	+1	predicted	missense	c.22	p.R8W	0.003	NULL	NULL	-	no_errors
TTBK2	146057	genome.wustl.edu	36	15	40825345	40825347	+	In_Frame_Del	DEL	GTG	GTG	-			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	GTG	GTG			GTG	GTG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	40825345	40825347	GTG	-	DEL	TTBK2	NM_173500	human	genbank	54_36p	-1	validated	in_frame_del	c.3675_3673	p.H1225in_frame_del	0.999:1.000:1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
REV3L	5980	genome.wustl.edu	36	6	111802483	111802483	+	Silent	SNP	T	T	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	111802483	111802483	T	A	SNP	REV3L	NM_002912	human	genbank	54_36p	-1	validated	silent	c.3768	p.G1256	0.629	superfamily_Ribonuclease H-like	superfamily_Ribonuclease H-like,HMMSmart_SM00486,HMMPfam_DNA_pol_B_exo,superfamily_DNA/RNA polymerases,HMMPfam_DNA_pol_B,PatternScan_DNA_POLYMERASE_B	-	no_errors
GUCY1B3	2983	genome.wustl.edu	36	4	156944337	156944337	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	156944337	156944337	C	T	SNP	GUCY1B3	NM_000857	human	genbank	54_36p	+1	validated	nonsense	c.1525	p.Q509*	1.000	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,HMMPfam_HNOB,superfamily_H-NOX domain,HMMPfam_HNOBA,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
CACNA1I	8911	genome.wustl.edu	36	22	38398922	38398922	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	38398922	38398922	A	G	SNP	CACNA1I	NM_021096	human	genbank	54_36p	+1	reviewed	missense	c.4672	p.I1558V	1.000	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
LSM4	25804	genome.wustl.edu	36	19	18281608	18281608	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18281608	18281608	G	A	SNP	LSM4	NM_012321	human	genbank	54_36p	-1	validated	missense	c.208	p.R70C	1.000	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	superfamily_Sm-like ribonucleoproteins,HMMPfam_LSM,HMMSmart_SM00651	-	no_errors
CAMKK1	84254	genome.wustl.edu	36	17	3726285	3726285	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2826-03B-01W-0728-08	TCGA-AB-2826-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	3726285	3726285	C	A	SNP	CAMKK1	NM_172207	human	genbank	54_36p	-1	reviewed	missense	c.1091	p.G364V	0.997	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
