Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
OR2W3	343171	genome.wustl.edu	36	1	246125976	246125978	+	In_Frame_Del	DEL	CTC	CTC	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	CTC	CTC			CTC	CTC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	246125976	246125978	CTC	-	DEL	OR2W3	NM_001001957	human	genbank	54_36p	+1	provisional	in_frame_del	c.465_467	p.S156in_frame_del	0.000:0.001:0.003	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SNX18	112574	genome.wustl.edu	36	5	53849587	53849587	+	Silent	SNP	A	A	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	53849587	53849587	A	C	SNP	SNX18	NM_052870	human	genbank	54_36p	+1	reviewed	silent	c.48	p.P16	1.000	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_PX domain,HMMPfam_PX,HMMSmart_SM00312,HMMPfam_BAR_3_WASP_bdg	-	no_errors
ASMTL	8623	genome.wustl.edu	36	X	1500706	1500706	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1500706	1500706	A	G	SNP	ASMTL	NM_004192	human	genbank	54_36p	-1	validated	missense	c.1090	p.Y364H	0.846	"superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Methyltransf_2"	"superfamily_Maf/Ham1,HMMPfam_Maf,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Methyltransf_2,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
CEP55	55165	genome.wustl.edu	36	10	95268673	95268673	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	95268673	95268673	G	A	SNP	CEP55	NM_018131	human	genbank	54_36p	+1	validated	missense	c.1043	p.R348K	0.988	NULL	NULL	-	no_errors
RECQL5	9400	genome.wustl.edu	36	17	71170367	71170367	+	Silent	SNP	G	G	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71170367	71170367	G	C	SNP	RECQL5	NM_004259	human	genbank	54_36p	-1	validated	silent	c.558	p.A186	0.916	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_RecQ5,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RAD51AP2	729475	genome.wustl.edu	36	2	17562756	17562756	+	Silent	SNP	G	G	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	17562756	17562756	G	T	SNP	RAD51AP2	NM_001099218	human	genbank	54_36p	-1	provisional	silent	c.408	p.G136	0.000	NULL	NULL	-	no_errors
PALB2	79728	genome.wustl.edu	36	16	23526736	23526736	+	Silent	SNP	A	A	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	23526736	23526736	A	C	SNP	PALB2	NM_024675	human	genbank	54_36p	-1	reviewed	silent	c.3300	p.T1100	0.008	superfamily_WD40_like	PatternScan_WD_REPEATS_1,superfamily_WD40_like	-	no_errors
SLX4	84464	genome.wustl.edu	36	16	3596626	3596626	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3596626	3596626	G	A	SNP	BTBD12	NM_032444	human	genbank	54_36p	-1	provisional	missense	c.610	p.R204C	0.444	NULL	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	-	no_errors
WDR17	116966	genome.wustl.edu	36	4	177293350	177293350	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	177293350	177293350	T	C	SNP	WDR17	NM_170710	human	genbank	54_36p	+1	reviewed	missense	c.1268	p.I423T	1.000	superfamily_Amine_DH_B_like,superfamily_WD40_like,PatternScan_WD_REPEATS_1	HMMSmart_WD40,HMMPfam_WD40,superfamily_Amine_DH_B_like,superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
ZNF8	7554	genome.wustl.edu	36	19	63497537	63497537	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	63497537	63497537	T	C	SNP	ZNF8	NM_021089	human	genbank	54_36p	+1	validated	missense	c.551	p.L184P	0.001	NULL	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
GSTT2	2953	genome.wustl.edu	36	22	22655149	22655149	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	22655149	22655149	G	A	SNP	GSTT2	NM_000854	human	genbank	54_36p	+1	validated	missense	c.439	p.E147K	0.995	superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	HMMPfam_GST_N,superfamily_Thioredoxin-like,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors
CEP350	9857	genome.wustl.edu	36	1	178331671	178331671	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	178331671	178331671	A	G	SNP	CEP350	NM_014810	human	genbank	54_36p	+1	reviewed	missense	c.8899	p.K2967E	0.218	NULL	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain	-	no_errors
ANKS1B	56899	genome.wustl.edu	36	12	98902141	98902141	+	Silent	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	98902141	98902141	C	T	SNP	ANKS1B	NM_152788	human	genbank	54_36p	-1	validated	silent	c.6	p.G2	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_PID,HMMSmart_SM00462,superfamily_SAM/Pointed domain,superfamily_PH domain-like	-	no_errors
FAM75A6	389730	genome.wustl.edu	36	9	43566816	43566816	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	43566816	43566816	G	C	SNP	FAM75A6	ENST00000332857	human	ensembl	54_36p	-1	known	missense	c.1867	p.R623G	0.005	NULL	NULL	-	no_errors
NEMF	9147	genome.wustl.edu	36	14	49342591	49342591	+	Silent	SNP	G	G	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	49342591	49342591	G	T	SNP	SDCCAG1	NM_004713	human	genbank	54_36p	-1	validated	silent	c.1755	p.I585	0.931	HMMPfam_DUF814	HMMPfam_DUF814,HMMPfam_FbpA	-	no_errors
FAM71F2	346653	genome.wustl.edu	36	7	128099699	128099699	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	128099699	128099699	C	G	SNP	FAM71F2	NM_001012454	human	genbank	54_36p	+1	validated	missense	c.12	p.I4M	0.983	NULL	NULL	-	no_errors
IL32	9235	genome.wustl.edu	36	16	3059021	3059021	+	Silent	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3059021	3059021	A	G	SNP	IL32	NM_001012631	human	genbank	54_36p	+1	reviewed	silent	c.231	p.R77	0.000	NULL	NULL	-	no_errors
LOC729843	729843	genome.wustl.edu	36	2	87011301	87011301	+	RNA	SNP	C	C	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	87011301	87011301	C	G	SNP	LOC729843	XR_016056	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
TMEM182	130827	genome.wustl.edu	36	2	102780842	102780842	+	Silent	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	102780842	102780842	C	T	SNP	TMEM182	NM_144632	human	genbank	54_36p	+1	validated	silent	c.420	p.F140	0.923	NULL	NULL	-	no_errors
LRRC7	57554	genome.wustl.edu	36	1	70276852	70276852	+	Silent	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	70276852	70276852	T	C	SNP	LRRC7	NM_020794	human	genbank	54_36p	+1	validated	silent	c.2643	p.S881	0.004	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like	-	no_errors
GUCA1C	9626	genome.wustl.edu	36	3	110155248	110155248	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	110155248	110155248	C	A	SNP	GUCA1C	NM_005459	human	genbank	54_36p	-1	validated	nonsense	c.52	p.E18*	0.667	superfamily_EF-hand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
LOC440577	440577	genome.wustl.edu	36	1	27406421	27406421	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	27406421	27406421	A	G	SNP	LOC440577	XM_496355	human	genbank	54_36p	+1	model	missense	c.402	p.I134M	0.636	HMMPfam_Nucleoplasmin	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
OR52E8	390079	genome.wustl.edu	36	11	5835412	5835412	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5835412	5835412	T	A	SNP	OR52E8	NM_001005168	human	genbank	54_36p	-1	provisional	missense	c.97	p.I33F	0.716	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
REST	5978	genome.wustl.edu	36	4	57492901	57492901	+	Silent	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	57492901	57492901	A	G	SNP	REST	NM_005612	human	genbank	54_36p	+1	reviewed	silent	c.3120	p.Q1040	0.006	NULL	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
KRT77	374454	genome.wustl.edu	36	12	51372608	51372608	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51372608	51372608	G	T	SNP	KRT77	NM_175078	human	genbank	54_36p	-1	validated	missense	c.1291	p.L431M	0.933	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
CLIP2	7461	genome.wustl.edu	36	7	73369911	73369911	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73369911	73369911	G	A	SNP	CLIP2	NM_003388	human	genbank	54_36p	+1	reviewed	silent	c.99	p.A33	0.000	NULL	HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1,superfamily_Cap-Gly domain	-	no_errors
IFNA16	3449	genome.wustl.edu	36	9	21206808	21206808	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	21206808	21206808	A	C	SNP	IFNA16	NM_002173	human	genbank	54_36p	-1	provisional	missense	c.497	p.V166G	0.002	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076	HMMPfam_Interferon,superfamily_4-helical cytokines,HMMSmart_SM00076,PatternScan_INTERFERON_A_B_D	-	no_errors
SNTG1	54212	genome.wustl.edu	36	8	51732096	51732096	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	51732096	51732096	G	A	SNP	SNTG1	NM_018967	human	genbank	54_36p	+1	reviewed	silent	c.924	p.L308	0.999	HMMSmart_SM00233,superfamily_PH domain-like	superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
ENSG00000214485	0	genome.wustl.edu	36	5	149454548	149454548	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	149454548	149454548	A	C	SNP	ENSG00000214485	ENST00000398410	human	ensembl	54_36p	+1	known	missense	c.566	p.K189T	0.998	superfamily_Ribosomal_L30	HMMPfam_Ribosomal_L30_N,HMMPfam_Ribosomal_L30,superfamily_Ribosomal_L30,PatternScan_RIBOSOMAL_L30	-	no_start_codon
DSG2	1829	genome.wustl.edu	36	18	27376616	27376616	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	27376616	27376616	G	A	SNP	DSG2	NM_001943	human	genbank	54_36p	+1	reviewed	missense	c.2137	p.E713K	0.005	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
FBXL14	144699	genome.wustl.edu	36	12	1573113	1573113	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	1573113	1573113	G	A	SNP	FBXL14	NM_152441	human	genbank	54_36p	-1	validated	silent	c.381	p.C127	1.000	superfamily_SSF52047	superfamily_SSF81383,HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047	-	no_errors
LOC728664	728664	genome.wustl.edu	36	2	178570959	178570959	+	RNA	SNP	G	G	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	178570959	178570959	G	T	SNP	LOC728664	XR_015711	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LRRC16B	90668	genome.wustl.edu	36	14	23603314	23603314	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23603314	23603314	G	A	SNP	LRRC16B	NM_138360	human	genbank	54_36p	+1	validated	missense	c.2999	p.R1000H	0.550	NULL	superfamily_RNI-like,HMMSmart_SM00368	-	no_errors
USP54	159195	genome.wustl.edu	36	10	74935160	74935160	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	74935160	74935160	T	C	SNP	USP54	NM_152586	human	genbank	54_36p	-1	provisional	missense	c.4082	p.H1361R	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH	-	no_errors
C2orf70	339778	genome.wustl.edu	36	2	26655796	26655796	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	26655796	26655796	G	A	SNP	C2orf70	NM_001105519	human	genbank	54_36p	+1	predicted	missense	c.592	p.E198K	1.000	NULL	HMMPfam_DUF2475	-	no_errors
NWD1	284434	genome.wustl.edu	36	19	16779485	16779485	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	16779485	16779485	G	A	SNP	NWD1	NM_001007525	human	genbank	54_36p	+1	validated	silent	c.3420	p.V1140	0.179	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BFSP2	8419	genome.wustl.edu	36	3	134674075	134674075	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	134674075	134674075	C	A	SNP	BFSP2	NM_003571	human	genbank	54_36p	+1	reviewed	missense	c.1220	p.A407D	1.000	NULL	PatternScan_IF,HMMPfam_Filament	-	no_errors
ATG4C	84938	genome.wustl.edu	36	1	63102365	63102365	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	63102365	63102365	G	T	SNP	ATG4C	NM_032852	human	genbank	54_36p	+1	reviewed	missense	c.1324	p.D442Y	1.000	NULL	HMMPfam_Peptidase_C54	-	no_errors
CCT6B	10693	genome.wustl.edu	36	17	30293950	30293950	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	30293950	30293950	C	T	SNP	CCT6B	NM_006584	human	genbank	54_36p	-1	reviewed	missense	c.703	p.V235I	1.000	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like	PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like	-	no_errors
ZNF44	51710	genome.wustl.edu	36	19	12245411	12245411	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12245411	12245411	G	A	SNP	ZNF44	NM_016264	human	genbank	54_36p	-1	provisional	missense	c.659	p.T220I	1.000	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC729317	729317	genome.wustl.edu	36	2	65285990	65285990	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	65285990	65285990	T	A	SNP	LOC729317	XM_001133585	human	genbank	54_36p	+1	model	missense	c.244	p.F82I	1.000	HMMPfam_Porin_3	HMMPfam_Porin_3,PatternScan_EUKARYOTIC_PORIN	-	no_errors
ZNF599	148103	genome.wustl.edu	36	19	39942531	39942532	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	AG	AG			AG	AG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	39942531	39942532	AG	-	DEL	ZNF599	NM_001007248	human	genbank	54_36p	-1	validated	frame_shift_del	c.1015_1014	p.Y339fs	0.866:0.867	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
OR10AD1	121275	genome.wustl.edu	36	12	46883142	46883143	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	46883142	46883143	-	A	INS	OR10AD1	NM_001004134	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.201_200	p.S68fs	0.999:1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
UCHL3	7347	genome.wustl.edu	36	13	75062075	75062077	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	TCC	TCC			TCC	TCC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	75062075	75062077	TCC	-	DEL	UCHL3	ENST00000377589	human	ensembl	54_36p	+1	known	in_frame_del	c.346_348	p.S118in_frame_del	1.000:1.000:1.000	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases	HMMPfam_Peptidase_C12,superfamily_Cysteine proteinases,PatternScan_UCH_1	-	no_errors
LOC391771	391771	genome.wustl.edu	36	5	23339842	23339842	+	RNA	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	23339842	23339842	C	T	SNP	LOC391771	XR_038806	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
SREK1	140890	genome.wustl.edu	36	5	65496470	65496470	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	65496470	65496470	A	C	SNP	SFRS12	NM_001077199	human	genbank	54_36p	+1	validated	missense	c.990	p.Q330H	0.995	superfamily_SSF54928	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
OR52E8	390079	genome.wustl.edu	36	11	5835193	5835193	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5835193	5835193	G	A	SNP	OR52E8	NM_001005168	human	genbank	54_36p	-1	provisional	missense	c.316	p.H106Y	0.916	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LOC727803	727803	genome.wustl.edu	36	12	75902008	75902008	+	RNA	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	75902008	75902008	A	G	SNP	LOC727803	XR_015131	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
TAS2R31	259290	genome.wustl.edu	36	12	11074458	11074458	+	Silent	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	11074458	11074458	T	C	SNP	TAS2R31	NM_176885	human	genbank	54_36p	-1	provisional	silent	c.744	p.S248	0.001	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors
SFMBT1	51460	genome.wustl.edu	36	3	52952524	52952524	+	Silent	SNP	G	G	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52952524	52952524	G	C	SNP	SFMBT1	NM_001005158	human	genbank	54_36p	-1	reviewed	silent	c.249	p.R83	0.995	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_1	-	no_errors
KRTAP10-1	386677	genome.wustl.edu	36	21	44783910	44783910	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	44783910	44783910	G	A	SNP	KRTAP10-1	NM_198691	human	genbank	54_36p	-1	reviewed	silent	c.552	p.C184	0.131	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
ASPSCR1	79058	genome.wustl.edu	36	17	77536700	77536700	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	77536700	77536700	G	A	SNP	ASPSCR1	NM_024083	human	genbank	54_36p	+1	reviewed	missense	c.302	p.G101D	0.960	NULL	superfamily_Ubiquitin-like,HMMPfam_UBX	-	no_errors
PALB2	79728	genome.wustl.edu	36	16	23548962	23548962	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	23548962	23548962	C	G	SNP	PALB2	NM_024675	human	genbank	54_36p	-1	reviewed	missense	c.2014	p.E672Q	0.040	NULL	superfamily_WD40_like,PatternScan_WD_REPEATS_1	-	no_errors
NIACR2	0	genome.wustl.edu	36	12	121766307	121766307	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	121766307	121766307	G	A	SNP	NIACR2	NM_006018	human	genbank	54_36p	-1	validated	missense	c.931	p.R311C	0.066	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
UBE3B	89910	genome.wustl.edu	36	12	108420439	108420439	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	108420439	108420439	T	C	SNP	UBE3B	NM_130466	human	genbank	54_36p	+1	reviewed	missense	c.838	p.S280P	0.998	NULL	HMMSmart_SM00015,HMMPfam_IQ,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
P2RY1	5028	genome.wustl.edu	36	3	154036770	154036770	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	154036770	154036770	G	A	SNP	P2RY1	NM_002563	human	genbank	54_36p	+1	reviewed	missense	c.509	p.C170Y	0.035	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
KIR3DL1	3811	genome.wustl.edu	36	19	60021831	60021831	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60021831	60021831	C	T	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	+1	reviewed	missense	c.320	p.S107L	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
MDFIC	29969	genome.wustl.edu	36	7	114406951	114406951	+	Silent	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	114406951	114406951	A	G	SNP	MDFIC	ENST00000393486	human	ensembl	54_36p	+1	known	silent	c.372	p.S124	0.982	NULL	PatternScan_EGF_1	-	no_errors
CD248	57124	genome.wustl.edu	36	11	65839619	65839619	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65839619	65839619	C	T	SNP	CD248	NM_020404	human	genbank	54_36p	-1	validated	missense	c.1456	p.A486T	0.001	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_C-type lectin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
CLDN23	137075	genome.wustl.edu	36	8	8597586	8597586	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	8597586	8597586	G	A	SNP	CLDN23	NM_194284	human	genbank	54_36p	+1	validated	missense	c.268	p.A90T	0.101	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
AK7	122481	genome.wustl.edu	36	14	96014631	96014631	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	96014631	96014631	G	A	SNP	AK7	NM_152327	human	genbank	54_36p	+1	validated	silent	c.1632	p.A544	0.096	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Dpy-30	-	no_errors
LOC642732	642732	genome.wustl.edu	36	11	106203566	106203566	+	RNA	SNP	T	T	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	106203566	106203566	T	G	SNP	LOC642732	XR_016381	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.922	-	-	-	pseudogene
ZSWIM2	151112	genome.wustl.edu	36	2	187410345	187410345	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	187410345	187410345	G	T	SNP	ZSWIM2	NM_182521	human	genbank	54_36p	-1	validated	missense	c.676	p.L226M	0.816	superfamily_SSF57850	HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_zf-C3HC4	-	no_errors
ENSG00000211934	0	genome.wustl.edu	36	14	105523811	105523811	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	105523811	105523811	T	A	SNP	ENSG00000211934	ENST00000390594	human	ensembl	54_36p	-1	known	missense	c.256	p.R86W	0.017	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00406	-	no_stop_codon:bad_bp_length_for_coding_region
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
FAM35A	54537	genome.wustl.edu	36	10	88901821	88901821	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	88901821	88901821	A	G	SNP	FAM35A	NM_019054	human	genbank	54_36p	+1	validated	missense	c.730	p.S244G	0.940	NULL	NULL	-	no_errors
uc010ifb.1	0	genome.wustl.edu	36	4	35972882	35972882	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	35972882	35972882	C	A	SNP	uc010ifb.1	ENST00000357504	human	ensembl	54_36p	+1	known	missense	c.599	p.S200Y	0.956	NULL	HMMPfam_Death,superfamily_DEATH domain	-	no_stop_codon
CLIP2	7461	genome.wustl.edu	36	7	73369842	73369842	+	Silent	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73369842	73369842	C	T	SNP	CLIP2	NM_003388	human	genbank	54_36p	+1	reviewed	silent	c.30	p.P10	0.998	NULL	superfamily_Cap-Gly domain,HMMPfam_CAP_GLY,PatternScan_CAP_GLY_1	-	no_errors
PBOV1	59351	genome.wustl.edu	36	6	138580876	138580877	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	138580876	138580877	-	G	INS	PBOV1	NM_021635	human	genbank	54_36p	-1	validated	frame_shift_ins	c.350_349	p.L117fs	0.000:0.000	NULL	NULL	-	no_errors
LOC100133500	100133500	genome.wustl.edu	36	X	1513872	1513872	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1513872	1513872	G	C	SNP	LOC100133500	XM_001720287	human	genbank	54_36p	-1	model	missense	c.235	p.Q79E	0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
BRD7P2	647076	genome.wustl.edu	36	3	161302694	161302694	+	RNA	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	161302694	161302694	C	T	SNP	BRD7P2	XR_017374	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.996	-	-	-	pseudogene
TPR	7175	genome.wustl.edu	36	1	184596582	184596582	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	184596582	184596582	A	G	SNP	TPR	NM_003292	human	genbank	54_36p	-1	reviewed	missense	c.1037	p.I346T	0.909	NULL	superfamily_Prefoldin,HMMPfam_TPR_MLP1_2	-	no_errors
HTR3E	285242	genome.wustl.edu	36	3	185300916	185300916	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	185300916	185300916	G	-	DEL	HTR3E	NM_182589	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.62	p.E22fs	0.013	NULL	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
LOC646644	646644	genome.wustl.edu	36	2	222517469	222517469	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	222517469	222517469	T	C	SNP	LOC646644	XM_929587	human	genbank	54_36p	+1	model	missense	c.284	p.I95T	0.990	HMMPfam_Laps	HMMPfam_Laps	-	no_errors
KIR3DL1	3811	genome.wustl.edu	36	19	60021704	60021704	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60021704	60021704	A	G	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	+1	reviewed	missense	c.193	p.R65G	0.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	-	no_errors
ETNK2	55224	genome.wustl.edu	36	1	202385465	202385465	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	202385465	202385465	G	A	SNP	ETNK2	NM_018208	human	genbank	54_36p	-1	reviewed	silent	c.507	p.P169	0.142	HMMPfam_Choline_kinase,superfamily_Kinase_like	HMMPfam_Choline_kinase,superfamily_Kinase_like	-	no_errors
EXOSC7	23016	genome.wustl.edu	36	3	44992786	44992786	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	44992786	44992786	A	G	SNP	EXOSC7	NM_015004	human	genbank	54_36p	+1	validated	missense	c.13	p.T5A	0.407	NULL	superfamily_Ribosomal protein S5 domain 2-like,HMMPfam_RNase_PH,HMMPfam_RNase_PH_C	-	no_errors
PYHIN1	149628	genome.wustl.edu	36	1	157175510	157175510	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	157175510	157175510	C	T	SNP	PYHIN1	NM_152501	human	genbank	54_36p	+1	validated	missense	c.428	p.S143F	0.000	NULL	HMMPfam_PAAD_DAPIN,HMMPfam_HIN	-	no_errors
CACNA1A	773	genome.wustl.edu	36	19	13284537	13284537	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	13284537	13284537	G	A	SNP	CACNA1A	ENST00000325084	human	ensembl	54_36p	-1	known	silent	c.1617	p.Y539	1.000	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
OR10G4	390264	genome.wustl.edu	36	11	123391517	123391517	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123391517	123391517	C	T	SNP	OR10G4	NM_001004462	human	genbank	54_36p	+1	provisional	missense	c.26	p.A9V	0.000	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
MAPK15	225689	genome.wustl.edu	36	8	144873557	144873557	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	144873557	144873557	G	A	SNP	MAPK15	NM_139021	human	genbank	54_36p	+1	provisional	missense	c.638	p.R213Q	0.822	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,HMMSmart_SM00219,PatternScan_PROTEIN_KINASE_ATP,PatternScan_MAPK	-	no_errors
SHC1	6464	genome.wustl.edu	36	1	153204838	153204838	+	Silent	SNP	C	C	G	rs8191984	byCluster	TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153204838	153204838	C	G	SNP	SHC1	NM_183001	human	genbank	54_36p	-1	validated	silent	c.1428	p.S476	0.000	superfamily_SH2 domain	superfamily_PH domain-like,HMMSmart_SM00462,HMMPfam_PID,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
PMP22	5376	genome.wustl.edu	36	17	15075089	15075089	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	15075089	15075089	G	A	SNP	PMP22	NM_000304	human	genbank	54_36p	-1	reviewed	missense	c.353	p.T118M	1.000	HMMPfam_PMP22_Claudin	HMMPfam_PMP22_Claudin,PatternScan_PMP22_1,PatternScan_PMP22_2	-	no_errors
TTC3	7267	genome.wustl.edu	36	21	37460721	37460721	+	Silent	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	37460721	37460721	T	C	SNP	TTC3	NM_001001894	human	genbank	54_36p	+1	validated	silent	c.4335	p.C1445	0.000	superfamily_Spectrin,superfamily_SSF48452	HMMPfam_TPR_1,HMMSmart_RING,HMMPfam_zf-C3HC4,HMMSmart_TPR,superfamily_Spectrin,superfamily_SSF48452,superfamily_SSF57850	-	no_errors
NHLH1	4807	genome.wustl.edu	36	1	158607195	158607195	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	158607195	158607195	C	T	SNP	NHLH1	NM_005598	human	genbank	54_36p	+1	validated	missense	c.50	p.S17L	1.000	NULL	superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_HLH,HMMSmart_SM00353	-	no_errors
TGM1	7051	genome.wustl.edu	36	14	23801338	23801338	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23801338	23801338	T	C	SNP	TGM1	NM_000359	human	genbank	54_36p	-1	reviewed	missense	c.61	p.T21A	0.015	NULL	superfamily_Ig_E-set,HMMPfam_Transglut_N,superfamily_SSF54001,HMMSmart_TGc,PatternScan_TRANSGLUTAMINASES,HMMPfam_Transglut_core,superfamily_Transglut_C,HMMPfam_Transglut_C	-	no_errors
ENSG00000205412	0	genome.wustl.edu	36	3	149367161	149367162	+	Splice_Site	INS	-	-	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	149367161	149367162	-	C	INS	ENSG00000205412	ENST00000379950	human	ensembl	54_36p	-1	novel	splice_site_ins	c.NULL	NULL	0.686:0.761	-	-	-	no_coding_region:pseudogene
GPR98	84059	genome.wustl.edu	36	5	90013021	90013021	+	Silent	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	90013021	90013021	A	G	SNP	GPR98	NM_032119	human	genbank	54_36p	+1	reviewed	silent	c.5658	p.T1886	0.209	HMMSmart_SM00237	HMMPfam_GPS,PatternScan_LIPOYL,HMMPfam_Calx-beta,HMMSmart_SM00237,HMMPfam_EPTP,PatternScan_A_DEAMINASE,superfamily_Concanavalin A-like lectins/glucanases	-	no_errors
LOC100131905	100131905	genome.wustl.edu	36	12	41359008	41359008	+	RNA	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	41359008	41359008	G	A	SNP	LOC100131905	XR_039334	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
OR6C1	390321	genome.wustl.edu	36	12	54000673	54000674	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	54000673	54000674	-	A	INS	OR6C1	NM_001005182	human	genbank	54_36p	+1	provisional	frame_shift_ins	c.23_24	p.E9fs	0.055:0.126	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
TM4SF20	79853	genome.wustl.edu	36	2	227939189	227939189	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	227939189	227939189	G	A	SNP	TM4SF20	NM_024795	human	genbank	54_36p	-1	validated	missense	c.265	p.L89F	0.004	HMMPfam_L6_membrane	HMMPfam_L6_membrane	-	no_errors
SLCO4A1	28231	genome.wustl.edu	36	20	60773719	60773719	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	60773719	60773719	G	A	SNP	SLCO4A1	ENST00000342674	human	ensembl	54_36p	+1	known	missense	c.1660	p.G554R	0.000	NULL	HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors
PUSL1	126789	genome.wustl.edu	36	1	1236301	1236301	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	1236301	1236301	G	A	SNP	PUSL1	NM_153339	human	genbank	54_36p	+1	provisional	silent	c.849	p.L283	0.000	superfamily_Pseudouridine synthase,HMMPfam_PseudoU_synth_1	superfamily_Pseudouridine synthase,HMMPfam_PseudoU_synth_1	-	no_errors
ZAN	7455	genome.wustl.edu	36	7	100190950	100190952	+	In_Frame_Del	DEL	ACA	ACA	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	ACA	ACA			ACA	ACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	100190950	100190952	ACA	-	DEL	ZAN	ENST00000349350	human	ensembl	54_36p	+1	known	in_frame_del	c.3290_3292	p.N1099in_frame_del	0.001:0.000:0.000	superfamily_Serine proterase inhibitors,HMMSmart_SM00215	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1,HMMSmart_SM00214,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_TIL_assoc,HMMPfam_EGF,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_C8,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
MATN1	4146	genome.wustl.edu	36	1	30967076	30967076	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	30967076	30967076	G	A	SNP	MATN1	NM_002379	human	genbank	54_36p	-1	reviewed	silent	c.204	p.I68	1.000	superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA	PatternScan_EGF_1,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_2,HMMPfam_Matrilin_ccoil	-	no_errors
CSF2RA	1438	genome.wustl.edu	36	X	1382868	1382868	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1382868	1382868	G	A	SNP	CSF2RA	NM_006140	human	genbank	54_36p	+1	reviewed	silent	c.999	p.V333	0.022	NULL	superfamily_Fibronectin type III,HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2	-	no_errors
LOC399491	399491	genome.wustl.edu	36	16	15105958	15105958	+	RNA	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	15105958	15105958	C	T	SNP	LOC399491	XR_041580	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
AKAP17A	8227	genome.wustl.edu	36	X	1673021	1673021	+	Silent	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1673021	1673021	C	T	SNP	SFRS17A	NM_005088	human	genbank	54_36p	+1	validated	silent	c.666	p.R222	0.988	NULL	NULL	-	no_errors
CD200R1L	344807	genome.wustl.edu	36	3	114028601	114028601	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	114028601	114028601	T	-	DEL	CD200R1L	NM_001008784	human	genbank	54_36p	-1	validated	frame_shift_del	c.608	p.H203fs	0.000	superfamily_Immunoglobulin	superfamily_Immunoglobulin	-	no_errors
OR52N1	79473	genome.wustl.edu	36	11	5766383	5766383	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	5766383	5766383	A	-	DEL	OR52N1	NM_001001913	human	genbank	54_36p	-1	provisional	frame_shift_del	c.240	p.N82fs	0.343	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
ZWILCH	55055	genome.wustl.edu	36	15	64619520	64619520	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	64619520	64619520	A	G	SNP	ZWILCH	NM_017975	human	genbank	54_36p	+1	validated	missense	c.1605	p.I535M	0.028	HMMPfam_DUF2352	HMMPfam_DUF2352	-	no_errors
OR2G2	81470	genome.wustl.edu	36	1	245818504	245818504	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	245818504	245818504	C	G	SNP	OR2G2	NM_001001915	human	genbank	54_36p	+1	provisional	missense	c.220	p.R74G	0.007	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
LOC118945	118945	genome.wustl.edu	36	10	89139088	89139088	+	RNA	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	89139088	89139088	G	A	SNP	LOC118945	XR_016426	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
EGFL6	25975	genome.wustl.edu	36	X	13522911	13522911	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	13522911	13522911	G	A	SNP	EGFL6	NM_015507	human	genbank	54_36p	+1	reviewed	missense	c.223	p.V75M	1.000	superfamily_Growth factor receptor domain,HMMSmart_SM00181,HMMPfam_EGF_2	superfamily_Growth factor receptor domain,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,superfamily_EGF/Laminin,HMMSmart_SM00137,HMMPfam_MAM	-	no_errors
MAGEB5	347541	genome.wustl.edu	36	X	26145763	26145763	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	26145763	26145763	C	A	SNP	MAGEB5	XM_293407	human	genbank	54_36p	+1	model	missense	c.700	p.L234M	0.026	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
LOC653381	653381	genome.wustl.edu	36	15	42929850	42929850	+	RNA	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	42929850	42929850	G	A	SNP	LOC653381	XR_017364	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MYB	4602	genome.wustl.edu	36	6	135555377	135555377	+	Silent	SNP	T	T	C			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	135555377	135555377	T	C	SNP	MYB	NM_005375	human	genbank	54_36p	+1	validated	silent	c.750	p.S250	1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75875456	75875456	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	75875456	75875456	C	T	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.8098	p.A2700T	0.564	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00210,HMMPfam_Collagen	-	no_errors
CTC1	80169	genome.wustl.edu	36	17	8074375	8074375	+	Silent	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	8074375	8074375	G	A	SNP	C17orf68	NM_025099	human	genbank	54_36p	-1	validated	silent	c.2895	p.A965	0.993	NULL	NULL	-	no_errors
ARID3A	1820	genome.wustl.edu	36	19	917584	917584	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	917584	917584	C	T	SNP	ARID3A	NM_005224	human	genbank	54_36p	+1	reviewed	missense	c.1211	p.A404V	0.792	NULL	HMMPfam_ARID,HMMSmart_BRIGHT,superfamily_ARID	-	no_errors
INO80B	83444	genome.wustl.edu	36	2	74536773	74536773	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	74536773	74536773	G	A	SNP	INO80B	NM_031288	human	genbank	54_36p	+1	validated	missense	c.406	p.D136N	1.000	NULL	HMMPfam_PAPA-1,HMMPfam_zf-HIT	-	no_errors
KDM2A	22992	genome.wustl.edu	36	11	66741795	66741795	+	Silent	SNP	C	C	T			TCGA-AB-2837-03B-01W-0728-08	TCGA-AB-2837-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66741795	66741795	C	T	SNP	FBXL11	NM_012308	human	genbank	54_36p	+1	reviewed	silent	c.705	p.P235	1.000	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,PatternScan_2FE2S_FER_1,HMMSmart_SM00249,PatternScan_ZF_PHD_1,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors
