Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000214481	0	genome.wustl.edu	36	6	78457274	78457274	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	78457274	78457274	C	-	DEL	ENSG00000214481	ENST00000398401	human	ensembl	54_36p	+1	known	frame_shift_del	c.167	p.A56fs	1.000	NULL	NULL	-	no_stop_codon
LOC643856	643856	genome.wustl.edu	36	12	8274446	8274446	+	RNA	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	8274446	8274446	G	A	SNP	LOC643856	XR_037350	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.997	-	-	-	pseudogene
OTOP1	133060	genome.wustl.edu	36	4	4279319	4279319	+	Silent	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	4279319	4279319	G	A	SNP	OTOP1	NM_177998	human	genbank	54_36p	-1	provisional	silent	c.174	p.A58	0.942	NULL	HMMPfam_DUF270	-	no_errors
PEX13	5194	genome.wustl.edu	36	2	61098818	61098819	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	61098818	61098819	-	A	INS	PEX13	ENST00000406695	human	ensembl	54_36p	+1	known	frame_shift_ins	c.110_111	p.R39fs	0.000:0.007	NULL	NULL	-	no_errors
C3orf56	285311	genome.wustl.edu	36	3	128398485	128398485	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	128398485	128398485	G	A	SNP	C3orf56	ENST00000398112	human	ensembl	54_36p	+1	known	missense	c.267	p.M89I	0.000	NULL	NULL	-	no_errors
KRT8P15	645834	genome.wustl.edu	36	2	203414070	203414072	+	RNA	DEL	GCT	GCT	-			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	GCT	GCT			GCT	GCT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	203414070	203414072	GCT	-	DEL	KRT8P15	XR_016994	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000:0.999:0.999	-	-	-	pseudogene
ENSG00000166104	0	genome.wustl.edu	36	15	60326027	60326027	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	60326027	60326027	C	A	SNP	ENSG00000166104	ENST00000299125	human	ensembl	54_36p	-1	known	missense	c.471	p.K157N	0.174	NULL	NULL	-	no_start_codon
TBC1D2	55357	genome.wustl.edu	36	9	100011143	100011143	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	100011143	100011143	A	C	SNP	TBC1D2	NM_018421	human	genbank	54_36p	-1	validated	missense	c.1778	p.L593R	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC	-	no_errors
CEP128	145508	genome.wustl.edu	36	14	80062986	80062986	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	80062986	80062986	A	T	SNP	C14orf145	NM_152446	human	genbank	54_36p	-1	validated	missense	c.3052	p.Y1018N	0.994	NULL	NULL	-	no_errors
DCP1B	196513	genome.wustl.edu	36	12	1932618	1932618	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	1932618	1932618	A	T	SNP	DCP1B	NM_152640	human	genbank	54_36p	-1	validated	missense	c.749	p.L250H	0.000	NULL	HMMPfam_DCP1,superfamily_PH domain-like	-	no_errors
DAG1	1605	genome.wustl.edu	36	3	49543349	49543349	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49543349	49543349	G	A	SNP	DAG1	NM_004393	human	genbank	54_36p	+1	reviewed	missense	c.401	p.S134N	0.264	HMMPfam_DAG1,superfamily_Cadherin,HMMSmart_CADG	HMMPfam_DAG1,superfamily_Cadherin,HMMSmart_CADG,superfamily_SSF111006	-	no_errors
KRT79	338785	genome.wustl.edu	36	12	51504252	51504252	+	Silent	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51504252	51504252	G	A	SNP	KRT79	NM_175834	human	genbank	54_36p	-1	validated	silent	c.1017	p.T339	0.988	superfamily_Prefoldin,HMMPfam_Filament	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
KRT18P40	390904	genome.wustl.edu	36	19	20937274	20937275	+	RNA	INS	-	-	G			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	20937274	20937275	-	G	INS	KRT18P40	XR_017288	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.997:1.000	-	-	-	pseudogene
IFIH1	64135	genome.wustl.edu	36	2	162882913	162882913	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	162882913	162882913	C	T	SNP	IFIH1	NM_022168	human	genbank	54_36p	-1	reviewed	missense	c.151	p.A51T	0.000	NULL	superfamily_DEATH domain,HMMPfam_CARD,HMMSmart_SM00487,HMMPfam_ResIII,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
AATK	9625	genome.wustl.edu	36	17	76710386	76710386	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	76710386	76710386	C	T	SNP	AATK	NM_001080395	human	genbank	54_36p	-1	reviewed	missense	c.2026	p.G676R	0.000	NULL	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
LOC645744	645744	genome.wustl.edu	36	17	30850387	30850387	+	RNA	DEL	T	T	-			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	30850387	30850387	T	-	DEL	LOC645744	XR_017633	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.329	-	-	-	pseudogene
L2HGDH	79944	genome.wustl.edu	36	14	49783643	49783643	+	Silent	SNP	A	A	G			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	49783643	49783643	A	G	SNP	L2HGDH	NM_024884	human	genbank	54_36p	-1	reviewed	silent	c.1275	p.V425	0.916	HMMPfam_DAO	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO	-	no_errors
LRFN5	145581	genome.wustl.edu	36	14	41430705	41430705	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	41430705	41430705	C	T	SNP	LRFN5	NM_152447	human	genbank	54_36p	+1	validated	missense	c.1888	p.P630S	1.000	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like	-	no_errors
SAMD11	148398	genome.wustl.edu	36	1	866533	866533	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	866533	866533	C	T	SNP	SAMD11	NM_152486	human	genbank	54_36p	+1	validated	missense	c.853	p.P285S	0.209	NULL	superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2	-	no_errors
CLCA4	22802	genome.wustl.edu	36	1	86818485	86818490	+	In_Frame_Del	DEL	CCTACA	CCTACA	-			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	CCTACA	CCTACA			CCTACA	CCTACA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	86818485	86818490	CCTACA	-	DEL	CLCA4	NM_012128	human	genbank	54_36p	+1	reviewed	in_frame_del	c.2629_2634	p.TP880in_frame_del	0.000:0.000:0.001:0.000:0.000:0.000	NULL	HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973	-	no_errors
SARM1	23098	genome.wustl.edu	36	17	23732719	23732720	+	In_Frame_Ins	INS	-	-	AGG			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	23732719	23732720	-	AGG	INS	SARM1	ENST00000379061	human	ensembl	54_36p	+1	known	in_frame_ins	c.835_836	p.281in_frame_insE	1.000:1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_SAM/Pointed domain,HMMSmart_SM00454,HMMPfam_SAM_2,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255	-	no_errors
RAPGEF1	2889	genome.wustl.edu	36	9	133469197	133469197	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	133469197	133469197	C	A	SNP	RAPGEF1	ENST00000372190	human	ensembl	54_36p	-1	known	missense	c.161	p.S54I	1.000	NULL	superfamily_Ras GEF,HMMSmart_SM00229,HMMPfam_RasGEF_N,HMMPfam_RasGEF	-	no_stop_codon
EXOC3L4	91828	genome.wustl.edu	36	14	102646127	102646127	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	102646127	102646127	C	-	DEL	C14orf73	NM_001077594	human	genbank	54_36p	+1	validated	frame_shift_del	c.1983	p.H662fs	0.903	HMMPfam_Sec6	HMMPfam_Sec6	-	no_errors
BAGE4	85317	genome.wustl.edu	36	21	10120604	10120604	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	10120604	10120604	G	A	SNP	BAGE4	NM_181704	human	genbank	54_36p	-1	provisional	missense	c.5	p.A2V	0.000	HMMPfam_BAGE	HMMPfam_BAGE	-	no_errors
GRIP2	80852	genome.wustl.edu	36	3	14523494	14523495	+	Splice_Site	INS	-	-	G			TCGA-AB-2841-03B-01W-0728-08	TCGA-AB-2841-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	14523494	14523495	-	G	INS	GRIP2	NM_001080423	human	genbank	54_36p	-1	provisional	splice_site_ins	c.2513-3_2513-2	e20-2	0.009:0.007	-	-	-	no_errors
