Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ENSG00000212912	0	genome.wustl.edu	36	NT_113901	31111	31112	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113901	31111	31112	-	T	INS	ENSG00000212912	ENST00000391599	human	ensembl	54_36p	-1	known	frame_shift_ins	c.161_160	p.S54fs	NULL	NULL	NULL	-	no_errors
KDM1A	23028	genome.wustl.edu	36	1	23278197	23278197	+	Silent	SNP	A	A	G			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	23278197	23278197	A	G	SNP	AOF2	NM_015013	human	genbank	54_36p	+1	reviewed	silent	c.1923	p.P641	0.359	superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase	HMMPfam_SWIRM,superfamily_FAD/NAD(P)-binding domain,HMMPfam_Amino_oxidase,superfamily_FAD-linked reductases C-terminal domain	-	no_errors
SMARCA2	6595	genome.wustl.edu	36	9	2071904	2071904	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	2071904	2071904	C	T	SNP	SMARCA2	NM_003070	human	genbank	54_36p	+1	reviewed	missense	c.2257	p.L753F	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N	HMMPfam_QLQ,HMMPfam_HSA,HMMSmart_SM00573,HMMPfam_BRK,HMMSmart_SM00592,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,HMMSmart_SM00490,HMMPfam_Helicase_C,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
FIGNL2	401720	genome.wustl.edu	36	12	50501472	50501472	+	Silent	SNP	C	C	T			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	50501472	50501472	C	T	SNP	FIGNL2	NM_001013690	human	genbank	54_36p	-1	provisional	silent	c.993	p.K331	0.445	NULL	PatternScan_AAA,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA	-	no_errors
UGT2A3	79799	genome.wustl.edu	36	4	69851670	69851670	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	69851670	69851670	G	A	SNP	UGT2A3	NM_024743	human	genbank	54_36p	-1	validated	missense	c.398	p.T133M	0.000	superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT	PatternScan_HMA_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase,HMMPfam_UDPGT,PatternScan_UDPGT	-	no_errors
LOC727770	727770	genome.wustl.edu	36	1	141770280	141770280	+	RNA	SNP	A	A	T	rs2951565	byCluster;by2Hit2Allele;byHapMap	TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	141770280	141770280	A	T	SNP	LOC727770	XR_037208	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
SETD2	29072	genome.wustl.edu	36	3	47130487	47130487	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	47130487	47130487	C	G	SNP	SETD2	NM_014159	human	genbank	54_36p	-1	reviewed	missense	c.3089	p.C1030S	1.000	superfamily_SSF82199,HMMSmart_AWS	superfamily_Ferritin/RR_like,superfamily_SSF82199,HMMSmart_AWS,HMMPfam_SET,HMMSmart_SET,HMMSmart_PostSET,superfamily_WW_Rsp5_WWP,HMMSmart_WW,HMMPfam_WW,PatternScan_WW_DOMAIN_1,HMMPfam_SRI_2	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82851891	82851891	+	Silent	SNP	A	A	T			TCGA-AB-2842-03A-01W-0726-08	TCGA-AB-2842-11A-01W-0727-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	82851891	82851891	A	T	SNP	VCAN	NM_004385	human	genbank	54_36p	+1	validated	silent	c.2010	p.T670	0.259	NULL	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,superfamily_C-type lectin-like,HMMSmart_SM00445,HMMPfam_Xlink,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,HMMSmart_SM00179,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
