Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
MT-ND5	0	genome.wustl.edu	36	MT	12623	12623	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	12623	12623	G	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.286	p.V96I	NULL	HMMPfam_Oxidored_q1_N	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
KIF2B	84643	genome.wustl.edu	36	17	49256322	49256322	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	49256322	49256322	C	T	SNP	KIF2B	NM_032559	human	genbank	54_36p	+1	validated	missense	c.929	p.T310M	1.000	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC653269	653269	genome.wustl.edu	36	2	130938092	130938092	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	130938092	130938092	C	T	SNP	LOC653269	XM_928585	human	genbank	54_36p	-1	model	missense	c.1995	p.M665I	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
LOC730512	730512	genome.wustl.edu	36	12	39201742	39201742	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	39201742	39201742	A	-	DEL	LOC730512	XM_001718004	human	genbank	54_36p	+1	model	frame_shift_del	c.1825	p.T609fs	0.002	NULL	NULL	-	no_errors
RAB43	339122	genome.wustl.edu	36	3	130323011	130323011	+	Silent	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	130323011	130323011	C	T	SNP	RAB43	NM_198490	human	genbank	54_36p	-1	validated	silent	c.12	p.P4	0.990	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00173,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	no_errors
DCHS1	8642	genome.wustl.edu	36	11	6601869	6601869	+	Silent	SNP	A	A	C			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	6601869	6601869	A	C	SNP	DCHS1	NM_003737	human	genbank	54_36p	-1	reviewed	silent	c.7614	p.A2538	0.678	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors
C2orf67	151050	genome.wustl.edu	36	2	210613433	210613433	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	210613433	210613433	G	T	SNP	C2orf67	NM_152519	human	genbank	54_36p	-1	validated	missense	c.1985	p.A662D	1.000	NULL	NULL	-	no_errors
ITGAD	3681	genome.wustl.edu	36	16	31316225	31316225	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	31316225	31316225	C	T	SNP	ITGAD	NM_005353	human	genbank	54_36p	+1	validated	missense	c.182	p.T61M	0.756	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191	superfamily_Integrin alpha N-terminal domain,HMMSmart_SM00191,superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMPfam_FG-GAP,HMMPfam_Integrin_alpha2,superfamily_Integrin domains,PatternScan_INTEGRIN_ALPHA,HMMPfam_Integrin_alpha	-	no_errors
NRSN1	140767	genome.wustl.edu	36	6	24249264	24249265	+	Frame_Shift_Ins	INS	-	-	CAAT			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	24249264	24249265	-	CAAT	INS	NRSN1	ENST00000378475	human	ensembl	54_36p	+1	known	frame_shift_ins	c.323_324	p.W108fs	0.004:0.000	NULL	NULL	-	no_errors
PDE7A	5150	genome.wustl.edu	36	8	66799099	66799099	+	Silent	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	66799099	66799099	C	T	SNP	PDE7A	NM_002603	human	genbank	54_36p	-1	validated	silent	c.1029	p.T343	1.000	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I	superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
FAM108A1	81926	genome.wustl.edu	36	19	1832453	1832453	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	1832453	1832453	A	C	SNP	FAM108A1	NM_031213	human	genbank	54_36p	-1	validated	missense	c.113	p.V38G	0.998	PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases	PatternScan_TONB_DEPENDENT_REC_1,superfamily_alpha/beta-Hydrolases,HMMPfam_Abhydrolase_2	-	no_errors
TUBB2C	10383	genome.wustl.edu	36	9	139256818	139256818	+	Silent	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	139256818	139256818	C	T	SNP	TUBB2C	NM_006088	human	genbank	54_36p	+1	validated	silent	c.327	p.G109	0.323	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
ENSG00000212884	0	genome.wustl.edu	36	NT_113930	117472	117472	+	Nonsense_Mutation	SNP	A	A	C			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113930	117472	117472	A	C	SNP	ENSG00000212884	ENST00000391571	human	ensembl	54_36p	+1	known	silent	c.103	p.R35	NULL	superfamily_SSF52283,HMMPfam_2-Hacid_dh	superfamily_SSF52283,HMMPfam_2-Hacid_dh	-	no_errors
ZNF667	63934	genome.wustl.edu	36	19	61670215	61670215	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	61670215	61670215	C	G	SNP	ZNF667	ENST00000342634	human	ensembl	54_36p	-1	known	missense	c.175	p.D59H	0.000	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ODF4	146852	genome.wustl.edu	36	17	8189828	8189828	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	8189828	8189828	C	T	SNP	ODF4	NM_153007	human	genbank	54_36p	+1	reviewed	missense	c.707	p.T236M	0.000	NULL	NULL	-	no_errors
ABTB1	80325	genome.wustl.edu	36	3	128878810	128878810	+	Silent	SNP	C	C	T			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	128878810	128878810	C	T	SNP	ABTB1	NM_172027	human	genbank	54_36p	+1	reviewed	silent	c.753	p.P251	0.978	NULL	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors
CDK11A	728642	genome.wustl.edu	36	1	1561692	1561692	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	1561692	1561692	A	G	SNP	CDC2L2	NM_033529	human	genbank	54_36p	-1	reviewed	missense	c.1931	p.L644P	0.980	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
NPM2	10361	genome.wustl.edu	36	8	21949964	21949964	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	21949964	21949964	A	G	SNP	NPM2	NM_182795	human	genbank	54_36p	+1	validated	missense	c.581	p.D194G	0.006	NULL	HMMPfam_Nucleoplasmin,superfamily_Nucleoplasmin-like core domain	-	no_errors
PPP2R3A	5523	genome.wustl.edu	36	3	137303573	137303573	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	137303573	137303573	G	-	DEL	PPP2R3A	NM_002718	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.2962	p.G988fs	1.000	superfamily_EF-hand,PatternScan_EF_HAND_1	superfamily_EF-hand,PatternScan_EF_HAND_1	-	no_errors
PLP2	5355	genome.wustl.edu	36	X	48916766	48916766	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	48916766	48916766	G	A	SNP	PLP2	NM_002668	human	genbank	54_36p	+1	provisional	missense	c.337	p.V113I	0.538	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
SLC44A5	204962	genome.wustl.edu	36	1	75456790	75456790	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	75456790	75456790	A	G	SNP	SLC44A5	NM_152697	human	genbank	54_36p	-1	validated	missense	c.1502	p.L501P	1.000	HMMPfam_DUF580	HMMPfam_DUF580	-	no_errors
LOC100128567	100128567	genome.wustl.edu	36	19	7175976	7175977	+	Frame_Shift_Ins	INS	-	-	AGAC			TCGA-AB-2850-03B-01W-0728-08	TCGA-AB-2850-11B-01W-0729-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	7175976	7175977	-	AGAC	INS	LOC100128567	XM_001726482	human	genbank	54_36p	-1	model	frame_shift_ins	c.167_166	p.S56fs	0.004:0.001	NULL	NULL	-	no_errors
