Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
PLEKHG1	57480	genome.wustl.edu	36	6	151193647	151193647	+	Silent	SNP	A	A	G			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	151193647	151193647	A	G	SNP	PLEKHG1	NM_001029884	human	genbank	54_36p	+1	provisional	silent	c.1707	p.S569	0.953	NULL	superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
DPP6	1804	genome.wustl.edu	36	7	154010672	154010672	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	154010672	154010672	C	T	SNP	DPP6	ENST00000406326	human	ensembl	54_36p	+1	known	missense	c.1007	p.P336L	0.002	NULL	superfamily_SSF82171	-	no_errors
KLHL5	51088	genome.wustl.edu	36	4	38791161	38791161	+	Silent	SNP	G	G	A			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	38791161	38791161	G	A	SNP	KLHL5	NM_015990	human	genbank	54_36p	+1	validated	silent	c.1953	p.T651	0.771	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
SPTLC2	9517	genome.wustl.edu	36	14	77088240	77088240	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	77088240	77088240	T	C	SNP	SPTLC2	NM_004863	human	genbank	54_36p	-1	validated	missense	c.1255	p.I419V	1.000	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
SLC27A2	11001	genome.wustl.edu	36	15	48282136	48282136	+	Splice_Site	SNP	T	T	G			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	48282136	48282136	T	G	SNP	SLC27A2	NM_003645	human	genbank	54_36p	+1	reviewed	splice_site	c.847+2	e3+2	0.996	-	-	-	no_errors
SLC13A1	6561	genome.wustl.edu	36	7	122542939	122542939	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	122542939	122542939	C	A	SNP	SLC13A1	NM_022444	human	genbank	54_36p	-1	validated	missense	c.1657	p.A553S	1.000	HMMPfam_Na_sulph_symp	HMMPfam_Na_sulph_symp,PatternScan_NA_SULFATE	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC440181	440181	genome.wustl.edu	36	14	58364276	58364276	+	RNA	SNP	C	C	T			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	58364276	58364276	C	T	SNP	LOC440181	XR_017581	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
MAP3K4	4216	genome.wustl.edu	36	6	161439341	161439343	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	CTG	CTG			CTG	CTG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	161439341	161439343	CTG	-	DEL	MAP3K4	NM_005922	human	genbank	54_36p	+1	reviewed	in_frame_del	c.3566_3568	p.A1193in_frame_del	0.981:0.960:0.963	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TANC2	26115	genome.wustl.edu	36	17	58851938	58851938	+	Silent	SNP	C	C	T			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	58851938	58851938	C	T	SNP	TANC2	NM_025185	human	genbank	54_36p	+1	validated	silent	c.4863	p.A1621	0.891	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank,HMMSmart_SM00028,superfamily_TPR-like,HMMPfam_TPR_1	-	no_errors
SLCO6A1	133482	genome.wustl.edu	36	5	101862376	101862376	+	Silent	SNP	G	G	A			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	101862376	101862376	G	A	SNP	SLCO6A1	NM_173488	human	genbank	54_36p	-1	validated	silent	c.72	p.A24	0.000	NULL	HMMPfam_OATP,superfamily_MFS general substrate transporter,superfamily_Kazal-type serine protease inhibitors,HMMPfam_Kazal_2	-	no_errors
HSP90B3P	343477	genome.wustl.edu	36	1	91880656	91880656	+	Silent	SNP	C	C	T			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	91880656	91880656	C	T	SNP	HSP90B3P	ENST00000370405	human	ensembl	54_36p	+1	known	silent	c.225	p.C75	0.671	NULL	HMMPfam_HSP90,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_SSF110942	-	no_errors
ANK2	287	genome.wustl.edu	36	4	114473772	114473772	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	114473772	114473772	C	A	SNP	ANK2	NM_001148	human	genbank	54_36p	+1	reviewed	missense	c.3338	p.T1113N	0.998	NULL	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank,HMMPfam_ZU5,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
AKR1CL1	340811	genome.wustl.edu	36	10	5193906	5193906	+	Silent	SNP	C	C	T			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	5193906	5193906	C	T	SNP	AKR1CL1	NM_001007536	human	genbank	54_36p	-1	provisional	silent	c.291	p.L97	0.819	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red	superfamily_Aldo/ket_red,HMMPfam_Aldo_ket_red,PatternScan_ALDOKETO_REDUCTASE_1	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506268	27506269	+	In_Frame_Ins	INS	-	-	TCTCTGAAATCAACGTAG			TCGA-AB-2853-03D-01W-0755-09	TCGA-AB-2853-11D-01W-0755-09					-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx																ITD-check	NA	NA	NA	NA	NA
