Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
COL25A1	84570	genome.wustl.edu	36	4	110039758	110039758	+	Splice_Site	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	110039758	110039758	C	T	SNP	COL25A1	NM_198721	human	genbank	54_36p	-1	validated	splice_site	c.861+1	e14+1	0.998	-	-	-	no_errors
ZNF185	7739	genome.wustl.edu	36	X	151838226	151838228	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	151838226	151838228	GAG	-	DEL	ZNF185	NM_007150	human	genbank	54_36p	+1	validated	in_frame_del	c.475_477	p.E162in_frame_del	0.533:0.636:0.723	NULL	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1	-	no_errors
MMP25	64386	genome.wustl.edu	36	16	3040422	3040422	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	3040422	3040422	C	T	SNP	MMP25	NM_022468	human	genbank	54_36p	+1	reviewed	missense	c.535	p.H179Y	0.993	superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10	PatternScan_CYSTEINE_SWITCH,PatternScan_HEMOPEXIN,HMMPfam_PG_binding_1,superfamily_PGBD_like,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX	-	no_errors
COX10	1352	genome.wustl.edu	36	17	14051012	14051012	+	Silent	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	14051012	14051012	C	T	SNP	COX10	NM_001303	human	genbank	54_36p	+1	reviewed	silent	c.1089	p.A363	0.993	HMMPfam_UbiA	HMMPfam_UbiA,PatternScan_UBIA	-	no_errors
MICAL2	9645	genome.wustl.edu	36	11	12204389	12204389	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	12204389	12204389	C	G	SNP	MICAL2	NM_014632	human	genbank	54_36p	+1	provisional	missense	c.1784	p.T595R	0.995	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
KRT37	8688	genome.wustl.edu	36	17	36831252	36831252	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36831252	36831252	G	A	SNP	KRT37	NM_003770	human	genbank	54_36p	-1	reviewed	silent	c.1134	p.A378	0.997	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LRIT1	26103	genome.wustl.edu	36	10	85984050	85984050	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	85984050	85984050	G	A	SNP	LRIT1	NM_015613	human	genbank	54_36p	-1	validated	silent	c.654	p.G218	0.078	HMMSmart_LRRCT,superfamily_SSF52058	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_IGc2,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_ig,superfamily_SSF48726,superfamily_SSF52058	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166611561	166611561	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	166611561	166611561	T	C	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	missense	c.1342	p.I448V	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324	-	no_errors
ENSG00000133375	0	genome.wustl.edu	36	7	65607697	65607697	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	65607697	65607697	C	T	SNP	ENSG00000133375	ENST00000255741	human	ensembl	54_36p	-1	known	missense	c.203	p.R68Q	1.000	NULL	NULL	-	no_start_codon:no_stop_codon
ASS1	445	genome.wustl.edu	36	9	132354667	132354667	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	132354667	132354667	A	G	SNP	ASS1	NM_000050	human	genbank	54_36p	+1	reviewed	missense	c.965	p.Y322C	1.000	HMMPfam_Arginosuc_synth,superfamily_Argininosuccinate synthetase C-terminal domain	superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_Arginosuc_synth,PatternScan_ARGININOSUCCIN_SYN_1,PatternScan_ARGININOSUCCIN_SYN_2,superfamily_Argininosuccinate synthetase C-terminal domain	-	no_errors
KRT75	9119	genome.wustl.edu	36	12	51114119	51114119	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51114119	51114119	G	A	SNP	KRT75	NM_004693	human	genbank	54_36p	-1	reviewed	silent	c.237	p.S79	0.002	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
GATA2	2624	genome.wustl.edu	36	3	129685497	129685497	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	129685497	129685497	G	A	SNP	GATA2	NM_032638	human	genbank	54_36p	-1	reviewed	missense	c.913	p.L305F	1.000	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716	-	no_errors
CSMD3	114788	genome.wustl.edu	36	8	113747769	113747769	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	113747769	113747769	C	T	SNP	CSMD3	NM_198123	human	genbank	54_36p	-1	validated	missense	c.2729	p.G910E	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,superfamily_Complement control module/SCR domain	-	no_errors
C16orf71	146562	genome.wustl.edu	36	16	4736954	4736956	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	4736954	4736956	GAG	-	DEL	C16orf71	NM_139170	human	genbank	54_36p	+1	validated	in_frame_del	c.1207_1209	p.E406in_frame_del	1.000:0.999:1.000	NULL	NULL	-	no_errors
ATAD2	29028	genome.wustl.edu	36	8	124420816	124420816	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	124420816	124420816	G	A	SNP	ATAD2	NM_014109	human	genbank	54_36p	-1	reviewed	missense	c.2770	p.P924S	0.997	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain	-	no_errors
OBSCN	84033	genome.wustl.edu	36	1	226526518	226526518	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	226526518	226526518	C	-	DEL	OBSCN	ENST00000359599	human	ensembl	54_36p	+1	known	frame_shift_del	c.5683	p.R1895fs	0.950	HMMSmart_IG,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_ig,superfamily_SSF48726	-	no_stop_codon
BACH1	571	genome.wustl.edu	36	21	29636837	29636837	+	Silent	SNP	C	C	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	29636837	29636837	C	A	SNP	BACH1	NM_001186	human	genbank	54_36p	+1	reviewed	silent	c.2023	p.R675	0.016	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1	-	no_errors
LMX1B	4010	genome.wustl.edu	36	9	128495275	128495275	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	128495275	128495275	C	T	SNP	LMX1B	NM_002316	human	genbank	54_36p	+1	validated	missense	c.524	p.P175L	0.982	NULL	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
FRG1B	284802	genome.wustl.edu	36	20	28237729	28237729	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	28237729	28237729	T	C	SNP	FRG1B	ENST00000278882	human	ensembl	54_36p	+1	known	missense	c.92	p.M31T	0.999	HMMPfam_FRG1,superfamily_Actin_crosslink	HMMPfam_FRG1,superfamily_Actin_crosslink	-	no_errors
JMJD1C	221037	genome.wustl.edu	36	10	64637174	64637174	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	64637174	64637174	A	G	SNP	JMJD1C	NM_032776	human	genbank	54_36p	-1	validated	missense	c.4261	p.S1421P	1.000	NULL	HMMSmart_SM00558,superfamily_Clavaminate synthase-like,HMMPfam_JmjC	-	no_errors
ZNF473	25888	genome.wustl.edu	36	19	55241783	55241783	+	Silent	SNP	T	T	G			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55241783	55241783	T	G	SNP	ZNF473	NM_001006656	human	genbank	54_36p	+1	validated	silent	c.2271	p.P757	0.001	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
FAM71A	149647	genome.wustl.edu	36	1	210866076	210866076	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	210866076	210866076	C	T	SNP	FAM71A	NM_153606	human	genbank	54_36p	+1	predicted	nonsense	c.1234	p.R412*	0.000	NULL	NULL	-	no_errors
DOCK10	55619	genome.wustl.edu	36	2	225426080	225426080	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	225426080	225426080	C	T	SNP	DOCK10	NM_014689	human	genbank	54_36p	-1	validated	missense	c.1892	p.C631Y	1.000	NULL	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Ded_cyto	-	no_errors
LUC7L2	51631	genome.wustl.edu	36	7	138744905	138744906	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	AG	AG			AG	AG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	138744905	138744906	AG	-	DEL	LUC7L2	NM_016019	human	genbank	54_36p	+1	validated	frame_shift_del	c.744_745	p.R252fs	1.000:1.000	HMMPfam_LUC7	HMMPfam_LUC7	-	no_errors
CDH16	1014	genome.wustl.edu	36	16	65503312	65503312	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	65503312	65503312	C	T	SNP	CDH16	NM_004062	human	genbank	54_36p	-1	reviewed	missense	c.1781	p.R594Q	0.023	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMSmart_SM00112,HMMPfam_Cadherin,PatternScan_CADHERIN_1	-	no_errors
GLT6D1	360203	genome.wustl.edu	36	9	137670836	137670836	+	Silent	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	137670836	137670836	G	A	SNP	GLT6D1	NM_182974	human	genbank	54_36p	-1	provisional	silent	c.19	p.L7	0.002	HMMPfam_Glyco_transf_6	HMMPfam_Glyco_transf_6,superfamily_SSF53448	-	no_errors
LOC100128744	100128744	genome.wustl.edu	36	7	136499727	136499727	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	136499727	136499727	C	T	SNP	LOC100128744	XM_001718911	human	genbank	54_36p	+1	model	missense	c.1061	p.P354L	0.999	superfamily_Ribosomal proteins L15p and L18e,HMMPfam_Ribosomal_L18e	superfamily_Ribosomal proteins L15p and L18e,HMMPfam_Ribosomal_L18e	-	no_errors
PLOD2	5352	genome.wustl.edu	36	3	147361390	147361390	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2857-03B-01W-0728-08	TCGA-AB-2857-11B-01W-0729-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	147361390	147361390	G	A	SNP	PLOD2	NM_182943	human	genbank	54_36p	-1	reviewed	missense	c.77	p.A26V	0.050	NULL	HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy,PatternScan_LYS_HYDROXYLASE	-	no_errors
