Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
GRIK4	2900	genome.wustl.edu	36	11	120338459	120338459	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	120338459	120338459	G	A	SNP	GRIK4	NM_014619	human	genbank	54_36p	+1	reviewed	missense	c.2125	p.G709R	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
DPPA2	151871	genome.wustl.edu	36	3	110516062	110516062	+	Silent	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	110516062	110516062	C	T	SNP	DPPA2	NM_138815	human	genbank	54_36p	-1	provisional	silent	c.18	p.L6	0.000	NULL	HMMSmart_SAP	-	no_errors
CNOT1	23019	genome.wustl.edu	36	16	57176853	57176853	+	Silent	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	57176853	57176853	C	T	SNP	CNOT1	NM_016284	human	genbank	54_36p	-1	validated	silent	c.696	p.R232	1.000	NULL	HMMPfam_Not1,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
ENSG00000215146	0	genome.wustl.edu	36	10	42153435	42153435	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	42153435	42153435	A	G	SNP	ENSG00000215146	ENST00000399681	human	ensembl	54_36p	-1	known	missense	c.260	p.L87P	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_stop_codon
NR1D2	9975	genome.wustl.edu	36	3	23993819	23993820	+	Frame_Shift_Ins	INS	-	-	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	3	23993819	23993820	-	A	INS	NR1D2	NM_005126	human	genbank	54_36p	+1	reviewed	frame_shift_ins	c.1645_1646	p.S549fs	1.000:1.000	superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
RAPGEF2	9693	genome.wustl.edu	36	4	160463047	160463047	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	160463047	160463047	G	T	SNP	RAPGEF2	NM_014247	human	genbank	54_36p	+1	validated	nonsense	c.469	p.E157*	1.000	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,superfamily_Ras_GEF,HMMSmart_RasGEFN,HMMPfam_RasGEF_N,superfamily_PDZ,HMMSmart_PDZ,HMMPfam_PDZ,HMMPfam_RA,HMMSmart_RA,HMMSmart_RasGEF,HMMPfam_RasGEF	-	no_errors
DCDC5	100506627	genome.wustl.edu	36	11	30895090	30895090	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	11	30895090	30895090	A	T	SNP	DCDC5	ENST00000406071	human	ensembl	54_36p	-1	known	missense	c.685	p.W229R	1.000	NULL	superfamily_SSF89837,superfamily_RicinB_like,HMMPfam_DCX	-	no_errors
GBP4	115361	genome.wustl.edu	36	1	89425289	89425289	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	1	89425289	89425289	C	T	SNP	GBP4	NM_052941	human	genbank	54_36p	-1	validated	missense	c.1495	p.G499R	0.001	HMMPfam_GBP_C,superfamily_GBP	HMMPfam_GBP_C,HMMPfam_GBP,superfamily_GBP,superfamily_SSF52540	-	no_errors
ZSCAN21	7589	genome.wustl.edu	36	7	99492574	99492574	+	Silent	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	7	99492574	99492574	C	T	SNP	ZSCAN21	NM_145914	human	genbank	54_36p	+1	validated	silent	c.9	p.T3	0.942	NULL	HMMPfam_SCAN,HMMSmart_SM00431,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CORIN	10699	genome.wustl.edu	36	4	47361825	47361825	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	4	47361825	47361825	C	T	SNP	CORIN	NM_006587	human	genbank	54_36p	-1	reviewed	missense	c.1570	p.E524K	0.119	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,superfamily_LDL receptor-like module,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_SRCR-like,HMMSmart_SM00202,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin,PatternScan_SRCR_1,PatternScan_TRYPSIN_SER	-	no_errors
PRF1	5551	genome.wustl.edu	36	10	72030188	72030188	+	Silent	SNP	G	G	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	72030188	72030188	G	A	SNP	PRF1	NM_001083116	human	genbank	54_36p	-1	reviewed	silent	c.477	p.A159	0.008	HMMPfam_MACPF	HMMPfam_MACPF,HMMSmart_SM00457,PatternScan_MAC_PERFORIN,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
ZNF702P	79986	genome.wustl.edu	36	19	58164799	58164799	+	RNA	SNP	G	G	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	19	58164799	58164799	G	A	SNP	ZNF702P	NR_003578	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.093	-	-	-	pseudogene
CACNG4	27092	genome.wustl.edu	36	17	62457324	62457324	+	Silent	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	17	62457324	62457324	C	T	SNP	CACNG4	NM_014405	human	genbank	54_36p	+1	reviewed	silent	c.726	p.R242	0.999	NULL	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
LOC100132955	100132955	genome.wustl.edu	36	9	68769421	68769421	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	68769421	68769421	C	T	SNP	LOC100132955	XM_001720993	human	genbank	54_36p	+1	model	missense	c.191	p.A64V	0.000	NULL	NULL	-	no_errors
SLTM	79811	genome.wustl.edu	36	15	56966894	56966894	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	15	56966894	56966894	A	G	SNP	SLTM	NM_024755	human	genbank	54_36p	-1	validated	missense	c.2513	p.L838P	1.000	NULL	superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
DNAI1	27019	genome.wustl.edu	36	9	34504416	34504416	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	9	34504416	34504416	T	C	SNP	DNAI1	NM_012144	human	genbank	54_36p	+1	reviewed	missense	c.1594	p.F532L	1.000	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WAPAL	23063	genome.wustl.edu	36	10	88267726	88267726	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	10	88267726	88267726	T	G	SNP	WAPAL	NM_015045	human	genbank	54_36p	-1	validated	missense	c.81	p.K27N	1.000	NULL	superfamily_ARM repeat,HMMPfam_WAPL	-	no_errors
SMC1A	8243	genome.wustl.edu	36	X	53425957	53425957	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	X	53425957	53425957	T	C	SNP	SMC1A	NM_006306	human	genbank	54_36p	-1	reviewed	missense	c.3358	p.K1120E	1.000	HMMPfam_SMC_N,superfamily_SSF52540	HMMPfam_SMC_N,superfamily_SSF52540,superfamily_SMC_hinge,HMMPfam_SMC_hinge	-	no_errors
PCDHB9	56127	genome.wustl.edu	36	5	140549322	140549322	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	5	140549322	140549322	C	T	SNP	PCDHB9	NM_019119	human	genbank	54_36p	+1	reviewed	missense	c.2246	p.T749I	0.141	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
VPS4A	27183	genome.wustl.edu	36	16	67915650	67915650	+	Silent	SNP	G	G	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	16	67915650	67915650	G	A	SNP	VPS4A	NM_013245	human	genbank	54_36p	+1	reviewed	silent	c.1251	p.T417	0.419	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Vps4_C	HMMSmart_SM00745,HMMPfam_MIT,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_Vps4_C	-	no_errors
C12orf63	374467	genome.wustl.edu	36	12	95674471	95674471	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	12	95674471	95674471	G	A	SNP	C12orf63	NM_198520	human	genbank	54_36p	+1	validated	missense	c.3220	p.G1074R	1.000	NULL	NULL	-	no_errors
LTBP2	4053	genome.wustl.edu	36	14	74087653	74087653	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2858-03D-01W-0755-09	TCGA-AB-2858-12A-01W-0755-09	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina HiSeq	14	74087653	74087653	C	A	SNP	LTBP2	NM_000428	human	genbank	54_36p	-1	reviewed	missense	c.1553	p.S518I	0.001	NULL	superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_TB module/8-cys domain,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Growth factor receptor domain	-	no_errors
