Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DHX37	57647	genome.wustl.edu	36	12	124031187	124031187	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	124031187	124031187	G	C	SNP	DHX37	NM_032656	human	genbank	54_36p	-1	reviewed	missense	c.540	p.D180E	0.028	NULL	PatternScan_DEAH_ATP_HELICASE,HMMSmart_DEXDc,superfamily_SSF52540,HMMSmart_HELICc,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
PTPN11	5781	genome.wustl.edu	36	12	111411292	111411292	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111411292	111411292	A	T	SNP	PTPN11	NM_002834	human	genbank	54_36p	+1	reviewed	missense	c.1529	p.Q510L	1.000	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
ELF4	2000	genome.wustl.edu	36	X	129032705	129032705	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	129032705	129032705	C	T	SNP	ELF4	NM_001421	human	genbank	54_36p	-1	validated	missense	c.800	p.R267Q	1.000	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_2	superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506262	27506263	+	In_Frame_Ins	INS	-	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATC			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27506262	27506263	-	TCATATTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATC	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1794_1793	p.599in_frame_insMVQVTGSSDNEYFYVDFREYE	0.789:0.821	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
ATG14	22863	genome.wustl.edu	36	14	54922339	54922339	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	54922339	54922339	G	A	SNP	KIAA0831	NM_014924	human	genbank	54_36p	-1	predicted	missense	c.638	p.T213M	0.819	HMMPfam_DUF2355	HMMPfam_DUF2355	-	no_errors
KCNJ6	3763	genome.wustl.edu	36	21	38008662	38008662	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	38008662	38008662	C	T	SNP	KCNJ6	NM_002240	human	genbank	54_36p	-1	reviewed	missense	c.668	p.R223Q	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,superfamily_SSF81324,superfamily_Ig_E-set	-	no_errors
PCDHB12	56124	genome.wustl.edu	36	5	140569962	140569962	+	Silent	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140569962	140569962	C	T	SNP	PCDHB12	NM_018932	human	genbank	54_36p	+1	reviewed	silent	c.1299	p.T433	0.000	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,superfamily_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
CCDC74A	90557	genome.wustl.edu	36	2	132006934	132006934	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	132006934	132006934	G	A	SNP	CCDC74A	NM_138770	human	genbank	54_36p	+1	provisional	missense	c.904	p.G302R	0.918	NULL	NULL	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75917709	75917709	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	75917709	75917709	C	A	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.4015	p.D1339Y	1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
PROM1	8842	genome.wustl.edu	36	4	15649715	15649715	+	Silent	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	15649715	15649715	C	T	SNP	PROM1	NM_006017	human	genbank	54_36p	-1	reviewed	silent	c.228	p.L76	0.002	HMMPfam_Prominin	HMMPfam_Prominin	-	no_errors
NEB	4703	genome.wustl.edu	36	2	152127439	152127439	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	152127439	152127439	G	T	SNP	NEB	NM_004543	human	genbank	54_36p	-1	reviewed	missense	c.13720	p.Q4574K	1.000	HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
HEATR4	399671	genome.wustl.edu	36	14	73059207	73059207	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	73059207	73059207	C	T	SNP	HEATR4	NM_203309	human	genbank	54_36p	-1	provisional	missense	c.262	p.A88T	0.001	NULL	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors
RAP1GDS1	5910	genome.wustl.edu	36	4	99483396	99483396	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	99483396	99483396	G	A	SNP	RAP1GDS1	NM_001100426	human	genbank	54_36p	+1	validated	missense	c.199	p.A67T	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_Arm,HMMSmart_SM00185	-	no_errors
VPS13C	54832	genome.wustl.edu	36	15	59969852	59969852	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	59969852	59969852	T	C	SNP	VPS13C	NM_020821	human	genbank	54_36p	-1	validated	missense	c.9145	p.I3049V	1.000	NULL	HMMPfam_DUF1162	-	no_errors
STAG2	10735	genome.wustl.edu	36	X	123019509	123019509	+	Splice_Site	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	123019509	123019509	G	A	SNP	STAG2	NM_001042749	human	genbank	54_36p	+1	validated	splice_site	c.1416+1	e13+1	1.000	-	-	-	no_errors
NBEA	26960	genome.wustl.edu	36	13	34704698	34704698	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	34704698	34704698	T	A	SNP	NBEA	NM_015678	human	genbank	54_36p	+1	reviewed	missense	c.5718	p.F1906L	1.000	superfamily_ARM repeat	superfamily_ARM repeat,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_DUF1088,superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
LRFN3	79414	genome.wustl.edu	36	19	41127523	41127523	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	41127523	41127523	C	T	SNP	LRFN3	NM_024509	human	genbank	54_36p	+1	provisional	missense	c.1649	p.S550L	0.979	NULL	HMMSmart_LRRNT,superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3	-	no_errors
THRAP3	9967	genome.wustl.edu	36	1	36539747	36539747	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	36539747	36539747	C	T	SNP	THRAP3	NM_005119	human	genbank	54_36p	+1	validated	nonsense	c.2509	p.R837*	0.969	NULL	NULL	-	no_errors
SLC25A24	29957	genome.wustl.edu	36	1	108530085	108530085	+	Silent	SNP	A	A	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	108530085	108530085	A	T	SNP	SLC25A24	NM_013386	human	genbank	54_36p	-1	validated	silent	c.198	p.T66	0.986	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand	superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
TMEM55A	55529	genome.wustl.edu	36	8	92077155	92077155	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	92077155	92077155	C	T	SNP	TMEM55A	NM_018710	human	genbank	54_36p	-1	validated	missense	c.700	p.G234R	1.000	HMMPfam_Tmemb_55A	HMMPfam_Tmemb_55A	-	no_errors
uc010iub.1	0	genome.wustl.edu	36	5	21527226	21527226	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	21527226	21527226	A	C	SNP	uc010iub.1	ENST00000359343	human	ensembl	54_36p	+1	known	missense	c.38	p.Q13P	0.000	HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain	HMMPfam_Glyco_hydro_2,superfamily_beta-Galactosidase/glucuronidase domain	-	no_errors
FAM22F	54754	genome.wustl.edu	36	9	96127925	96127925	+	Silent	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	96127925	96127925	G	A	SNP	FAM22F	NM_017561	human	genbank	54_36p	-1	validated	silent	c.129	p.L43	0.038	NULL	NULL	-	no_errors
OR13C5	138799	genome.wustl.edu	36	9	106400860	106400860	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2871-03A-01W-0732-08	TCGA-AB-2871-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	106400860	106400860	G	A	SNP	OR13C5	NM_001004482	human	genbank	54_36p	-1	provisional	missense	c.656	p.T219M	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
