Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
ILDR1	286676	genome.wustl.edu	36	3	123195313	123195313	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	123195313	123195313	C	T	SNP	ILDR1	NM_175924	human	genbank	54_36p	-1	provisional	missense	c.841	p.V281M	0.057	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_LSR	-	no_errors
EPPK1	83481	genome.wustl.edu	36	8	145012694	145012694	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145012694	145012694	C	T	SNP	EPPK1	NM_031308	human	genbank	54_36p	-1	provisional	missense	c.6641	p.R2214H	0.011	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat	-	no_stop_codon:bad_bp_length_for_coding_region
SACS	26278	genome.wustl.edu	36	13	22826871	22826871	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	22826871	22826871	G	A	SNP	SACS	NM_014363	human	genbank	54_36p	-1	validated	missense	c.1439	p.T480M	1.000	NULL	superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,superfamily_Chaperone J-domain,HMMPfam_HEPN,superfamily_Nucleotidyltransferase substrate binding subunit/domain,HMMSmart_SM00748	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
USP11	8237	genome.wustl.edu	36	X	46989747	46989747	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	46989747	46989747	T	A	SNP	USP11	NM_004651	human	genbank	54_36p	+1	reviewed	missense	c.2321	p.M774K	0.993	superfamily_SSF54001,HMMPfam_UCH	HMMSmart_DUSP,HMMPfam_DUF1055,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
LOC400986	400986	genome.wustl.edu	36	2	95910079	95910079	+	Silent	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	95910079	95910079	G	A	SNP	LOC400986	XM_001717763	human	genbank	54_36p	-1	model	silent	c.3387	p.P1129	0.004	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
UNC45B	146862	genome.wustl.edu	36	17	30505827	30505827	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	30505827	30505827	C	T	SNP	UNC45B	NM_173167	human	genbank	54_36p	+1	validated	missense	c.593	p.A198V	1.000	superfamily_ARM repeat,HMMSmart_SM00185	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_ARM repeat,HMMSmart_SM00185	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506244	27506245	+	In_Frame_Ins	INS	-	-	TCCCATTTGAGATCATAT			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	13	27506244	27506245	-	tcccatttgagatcatat	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1811_1811	ITD	1.000:1.000	NULL	HMMPfam_Pkinase_Tyr;superfamily_Protein kinase-like (PK-like);HMMPfam_ig;superfamily_Immunoglobulin	-	NA
ADAM21P1	145241	genome.wustl.edu	36	14	69782405	69782405	+	RNA	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	69782405	69782405	C	T	SNP	ADAM21P	NR_003951	human	genbank	54_36p	-1	validated	rna	NULL	NULL	0.004	-	-	-	pseudogene
IDH2	3418	genome.wustl.edu	36	15	88432938	88432938	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432938	88432938	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.419	p.R140Q	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
ENSG00000211619	0	genome.wustl.edu	36	2	89411214	89411214	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	89411214	89411214	C	T	SNP	ENSG00000211619	ENST00000390264	human	ensembl	54_36p	-1	known	missense	c.95	p.S32N	0.823	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	HMMPfam_V-set,superfamily_SSF48726,HMMSmart_IGv	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
STEAP1	26872	genome.wustl.edu	36	7	89628094	89628094	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	89628094	89628094	G	A	SNP	STEAP1	NM_012449	human	genbank	54_36p	+1	reviewed	missense	c.124	p.V42M	0.191	NULL	HMMPfam_Ferric_reduct	-	no_errors
XKR4	114786	genome.wustl.edu	36	8	56598582	56598582	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	56598582	56598582	C	A	SNP	XKR4	NM_052898	human	genbank	54_36p	+1	provisional	missense	c.1195	p.L399M	1.000	HMMPfam_XK-related	HMMPfam_XK-related	-	no_errors
N4BP1	9683	genome.wustl.edu	36	16	47137598	47137598	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	47137598	47137598	G	A	SNP	N4BP1	NM_153029	human	genbank	54_36p	-1	validated	missense	c.2294	p.P765L	1.000	NULL	NULL	-	no_errors
CSPG4	1464	genome.wustl.edu	36	15	73768463	73768463	+	Silent	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	73768463	73768463	G	A	SNP	CSPG4	NM_001897	human	genbank	54_36p	-1	reviewed	silent	c.1998	p.H666	0.773	NULL	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_ATPASE_ALPHA_BETA	-	no_errors
IGSF9B	22997	genome.wustl.edu	36	11	133319468	133319468	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	133319468	133319468	C	T	SNP	IGSF9B	NM_014987	human	genbank	54_36p	-1	validated	missense	c.266	p.R89Q	1.000	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_I-set,HMMSmart_IGc2,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_fn3	-	no_errors
FAM40B	57464	genome.wustl.edu	36	7	128878758	128878758	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	128878758	128878758	C	T	SNP	FAM40B	NM_020704	human	genbank	54_36p	+1	validated	missense	c.343	p.R115W	1.000	HMMPfam_N1221	HMMPfam_N1221	-	no_errors
ELMOD1	55531	genome.wustl.edu	36	11	107006491	107006491	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	107006491	107006491	G	A	SNP	ELMOD1	NM_018712	human	genbank	54_36p	+1	validated	missense	c.156	p.M52I	1.000	NULL	HMMPfam_ELMO_CED12	-	no_errors
TBC1D22A	25771	genome.wustl.edu	36	22	45568342	45568342	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	45568342	45568342	C	G	SNP	TBC1D22A	NM_014346	human	genbank	54_36p	+1	provisional	missense	c.400	p.P134A	0.000	NULL	PatternScan_AA_TRNA_LIGASE_I,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_TBC,HMMSmart_SM00164	-	no_errors
KLF15	28999	genome.wustl.edu	36	3	127554059	127554059	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	127554059	127554059	C	T	SNP	KLF15	NM_014079	human	genbank	54_36p	-1	validated	missense	c.397	p.V133I	0.026	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
FLRT2	23768	genome.wustl.edu	36	14	85157866	85157866	+	Silent	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	85157866	85157866	C	T	SNP	FLRT2	NM_013231	human	genbank	54_36p	+1	reviewed	silent	c.255	p.H85	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,HMMPfam_LRRCT,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
TUBB6	84617	genome.wustl.edu	36	18	12298320	12298320	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	12298320	12298320	G	T	SNP	TUBB6	NM_032525	human	genbank	54_36p	+1	provisional	missense	c.29	p.G10V	1.000	superfamily_Tubulin_FtsZ,HMMPfam_Tubulin	PatternScan_TUBULIN_B_AUTOREG,superfamily_Tubulin_FtsZ,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tub_FtsZ_C,HMMPfam_Tubulin_C	-	no_errors
FLRT1	23769	genome.wustl.edu	36	11	63640760	63640760	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	63640760	63640760	C	T	SNP	FLRT1	NM_013280	human	genbank	54_36p	+1	reviewed	missense	c.445	p.R149C	0.943	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	superfamily_L domain-like,HMMPfam_LRRNT,HMMSmart_SM00013,HMMSmart_SM00369,HMMPfam_LRR_1,HMMSmart_SM00364,HMMSmart_SM00082,HMMPfam_fn3	-	no_errors
EEA1	8411	genome.wustl.edu	36	12	91695929	91695929	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	91695929	91695929	G	A	SNP	EEA1	NM_003566	human	genbank	54_36p	-1	validated	missense	c.3812	p.T1271M	0.992	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_FYVE_PHD_ZnF,HMMSmart_FYVE,HMMPfam_FYVE	-	no_errors
LOC727867	727867	genome.wustl.edu	36	21	13390508	13390508	+	RNA	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	13390508	13390508	G	A	SNP	LOC727867	XR_036978	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.013	-	-	-	pseudogene
GPR112	139378	genome.wustl.edu	36	X	135259212	135259212	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	135259212	135259212	C	T	SNP	GPR112	NM_153834	human	genbank	54_36p	+1	validated	missense	c.5681	p.P1894L	0.002	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_ConA_like_lec_gl,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
LRRC58	116064	genome.wustl.edu	36	3	121532775	121532775	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	121532775	121532775	C	T	SNP	LRRC58	NM_001099678	human	genbank	54_36p	-1	validated	missense	c.1078	p.V360I	1.000	NULL	superfamily_SSF52058,HMMPfam_LRR_1,HMMSmart_LRR_TYP	-	no_errors
TROAP	10024	genome.wustl.edu	36	12	48009233	48009233	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	48009233	48009233	G	A	SNP	TROAP	NM_005480	human	genbank	54_36p	+1	validated	missense	c.1043	p.R348H	0.009	NULL	NULL	-	no_errors
PKNOX1	5316	genome.wustl.edu	36	21	43322005	43322005	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	43322005	43322005	G	C	SNP	PKNOX1	NM_004571	human	genbank	54_36p	+1	validated	missense	c.1051	p.A351P	1.000	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
ENSG00000180747	0	genome.wustl.edu	36	16	22399681	22399681	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	22399681	22399681	G	A	SNP	ENSG00000180747	ENST00000327173	human	ensembl	54_36p	+1	known	missense	c.595	p.V199I	0.990	NULL	NULL	-	no_start_codon
LOC648927	648927	genome.wustl.edu	36	X	95115674	95115674	+	RNA	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	95115674	95115674	C	T	SNP	LOC648927	XR_038906	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.004	-	-	-	pseudogene
PRG-3	0	genome.wustl.edu	36	9	103126156	103126156	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	103126156	103126156	C	T	SNP	PRG-3	NM_017753	human	genbank	54_36p	+1	reviewed	missense	c.974	p.T325I	1.000	NULL	superfamily_AcPase_VanPerase,HMMPfam_PAP2,HMMSmart_acidPPc	-	no_errors
ENSG00000159247	0	genome.wustl.edu	36	9	140191000	140191000	+	Silent	SNP	C	C	T			TCGA-AB-2877-03A-01W-0732-08	TCGA-AB-2877-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	140191000	140191000	C	T	SNP	ENSG00000159247	ENST00000290377	human	ensembl	54_36p	+1	known	silent	c.798	p.F266	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_start_codon
