Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CCDC165	23255	genome.wustl.edu	36	18	8796946	8796946	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	8796946	8796946	G	A	SNP	KIAA0802	NM_015210	human	genbank	54_36p	+1	predicted	missense	c.2492	p.R831H	0.050	NULL	NULL	-	no_errors
ITGB5	3693	genome.wustl.edu	36	3	126010604	126010604	+	Silent	SNP	G	G	A			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	126010604	126010604	G	A	SNP	ITGB5	NM_002213	human	genbank	54_36p	-1	provisional	silent	c.1218	p.S406	1.000	HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF69179	HMMSmart_PSI,HMMPfam_Integrin_beta,HMMSmart_INB,superfamily_SSF53300,HMMSmart_VWA,superfamily_SSF69179,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_INTEGRIN_BETA,superfamily_SSF57196,HMMSmart_EGF,superfamily_Integrin_bsu_tail,HMMPfam_Integrin_B_tail,HMMPfam_Integrin_b_cyt	-	no_errors
PMS2P5	5383	genome.wustl.edu	36	7	73944898	73944898	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	73944898	73944898	G	C	SNP	PMS2L5	ENST00000337023	human	ensembl	54_36p	+1	known	missense	c.65	p.W22S	0.000	NULL	NULL	-	no_start_codon
RUNX1T1	862	genome.wustl.edu	36	8	93073230	93073230	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	93073230	93073230	G	T	SNP	RUNX1T1	NM_175634	human	genbank	54_36p	-1	reviewed	nonsense	c.804	p.C268*	1.000	NULL	HMMPfam_TAFH,HMMSmart_SM00549,HMMPfam_NHR2,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
KIT	3815	genome.wustl.edu	36	4	55294077	55294077	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	55294077	55294077	G	T	SNP	KIT	NM_000222	human	genbank	54_36p	+1	reviewed	missense	c.2446	p.D816Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
LRRC15	131578	genome.wustl.edu	36	3	195561630	195561630	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	195561630	195561630	C	T	SNP	LRRC15	NM_130830	human	genbank	54_36p	-1	validated	missense	c.1438	p.E480K	0.003	NULL	superfamily_SSF52058,HMMSmart_LRRNT,HMMSmart_LRR_TYP,HMMPfam_LRR_1,HMMSmart_LRRCT	-	no_errors
ZFPM1	161882	genome.wustl.edu	36	16	87126581	87126581	+	Silent	SNP	C	C	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	87126581	87126581	C	T	SNP	ZFPM1	NM_153813	human	genbank	54_36p	+1	validated	silent	c.1005	p.C335	0.995	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
WDR88	126248	genome.wustl.edu	36	19	38315008	38315008	+	Silent	SNP	C	C	A			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38315008	38315008	C	A	SNP	WDR88	NM_173479	human	genbank	54_36p	+1	validated	silent	c.93	p.G31	0.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,HMMSmart_SM00564,HMMPfam_PQQ,PatternScan_WD_REPEATS_1	-	no_errors
C6orf170	221322	genome.wustl.edu	36	6	121475960	121475960	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	121475960	121475960	T	C	SNP	C6orf170	NM_152730	human	genbank	54_36p	-1	validated	missense	c.3116	p.K1039R	1.000	NULL	superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
ESM1	11082	genome.wustl.edu	36	5	54316851	54316851	+	Silent	SNP	C	C	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	54316851	54316851	C	T	SNP	ESM1	NM_007036	human	genbank	54_36p	-1	reviewed	silent	c.252	p.Q84	0.995	HMMSmart_IB	HMMSmart_IB	-	no_errors
KLHL2	11275	genome.wustl.edu	36	4	166454642	166454642	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	166454642	166454642	A	T	SNP	KLHL2	NM_007246	human	genbank	54_36p	+1	provisional	missense	c.1483	p.N495Y	1.000	superfamily_Gal_oxid_central,HMMSmart_Kelch,HMMPfam_Kelch_1	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMPfam_BACK,superfamily_Gal_oxid_central,HMMPfam_Kelch_1,HMMSmart_Kelch	-	no_errors
METTL21C	196541	genome.wustl.edu	36	13	102141180	102141180	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	102141180	102141180	G	T	SNP	C13orf39	NM_001010977	human	genbank	54_36p	-1	predicted	missense	c.266	p.A89E	0.986	superfamily_SSF53335,HMMPfam_Methyltransf_16	superfamily_SSF53335,HMMPfam_Methyltransf_16	-	no_errors
LOC389000	389000	genome.wustl.edu	36	2	91440296	91440296	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2881-03A-01W-0732-08	TCGA-AB-2881-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	91440296	91440296	A	G	SNP	LOC389000	XM_371534	human	genbank	54_36p	-1	model	missense	c.1130	p.L377P	1.000	HMMPfam_Na_H_Exchanger	HMMPfam_Na_H_Exchanger	-	pseudogene
