Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FAM155A	728215	genome.wustl.edu	36	13	106620903	106620903	+	Silent	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	106620903	106620903	G	A	SNP	FAM155A	NM_001080396	human	genbank	54_36p	-1	provisional	silent	c.1320	p.A440	0.272	NULL	NULL	-	no_errors
MT-ND5	0	genome.wustl.edu	36	MT	13666	13666	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	13666	13666	T	A	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1329	p.I443M	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
CALR	811	genome.wustl.edu	36	19	12911446	12911447	+	Splice_Site	INS	-	-	T			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12911446	12911447	-	T	INS	CALR	NM_004343	human	genbank	54_36p	+1	reviewed	splice_site_ins	c.397+1_397+1	e3+1	1.000:1.000	-	-	-	no_errors
AKD1	221264	genome.wustl.edu	36	6	109921318	109921318	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	109921318	109921318	G	A	SNP	C6orf224	NM_173559	human	genbank	54_36p	-1	predicted	missense	c.880	p.H294Y	0.975	NULL	NULL	-	no_errors
ENSG00000199769	0	genome.wustl.edu	36	X	69982743	69982745	+	RNA	DEL	CAT	CAT	-			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	CAT	CAT			CAT	CAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	69982743	69982745	CAT	-	DEL	ENSG00000199769	ENST00000362899	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.000:0.000:0.000	-	-	-	no_errors
MT-ND1	0	genome.wustl.edu	36	MT	3919	3919	+	Silent	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	3919	3919	G	A	SNP	MT-ND1	ENST00000361390	human	ensembl	54_36p	+1	known	silent	c.612	p.E204	NULL	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_2	HMMPfam_NADHdh,PatternScan_COMPLEX1_ND1_1,PatternScan_COMPLEX1_ND1_2	-	no_errors
PHIP	55023	genome.wustl.edu	36	6	79792571	79792571	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	79792571	79792571	C	A	SNP	PHIP	NM_017934	human	genbank	54_36p	-1	validated	missense	c.630	p.W210C	1.000	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMSmart_SM00320,HMMPfam_WD40,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
OR11H12	440153	genome.wustl.edu	36	14	18448512	18448512	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	18448512	18448512	C	A	SNP	OR11H12	NM_001013354	human	genbank	54_36p	+1	provisional	missense	c.919	p.L307I	0.968	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
LOC100133075	100133075	genome.wustl.edu	36	1	147554305	147554305	+	RNA	SNP	G	G	C			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	147554305	147554305	G	C	SNP	LOC100133075	XR_039086	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
SEPX1	51734	genome.wustl.edu	36	16	1931315	1931315	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	1931315	1931315	T	C	SNP	SEPX1	ENST00000399753	human	ensembl	54_36p	-1	known	missense	c.148	p.I50V	1.000	superfamily_Mss4_like,HMMPfam_SelR	superfamily_Mss4_like,HMMPfam_SelR	-	no_errors
MLLT4	4301	genome.wustl.edu	36	6	168095154	168095154	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	168095154	168095154	G	A	SNP	MLLT4	NM_001040001	human	genbank	54_36p	+1	validated	missense	c.4247	p.R1416H	1.000	NULL	HMMPfam_RA,HMMSmart_RA,HMMPfam_FHA,HMMSmart_FHA,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,superfamily_SMAD_FHA,HMMPfam_DIL,superfamily_SSF54236	-	no_errors
LOC642305	642305	genome.wustl.edu	36	4	32689232	32689232	+	RNA	SNP	C	C	T			TCGA-AB-2897-03A-01W-0733-08	TCGA-AB-2897-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	32689232	32689232	C	T	SNP	LOC642305	XR_042368	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.290	-	-	-	pseudogene
