Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SEL1L2	80343	genome.wustl.edu	36	20	13806170	13806170	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	13806170	13806170	C	T	SNP	SEL1L2	NM_025229	human	genbank	54_36p	-1	validated	missense	c.1022	p.G341E	1.000	superfamily_SSF81901,HMMPfam_Sel1,HMMSmart_SEL1	HMMSmart_SEL1,superfamily_SSF81901,HMMPfam_Sel1	-	no_errors
ATP2C1	27032	genome.wustl.edu	36	3	132197626	132197626	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	132197626	132197626	G	A	SNP	ATP2C1	NM_001001486	human	genbank	54_36p	+1	reviewed	missense	c.2107	p.V703I	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
ASXL2	55252	genome.wustl.edu	36	2	25820737	25820738	+	Frame_Shift_Ins	INS	-	-	CT			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25820737	25820738	-	CT	INS	ASXL2	NM_018263	human	genbank	54_36p	-1	validated	frame_shift_ins	c.1973_1972	p.A658fs	1.000:1.000	NULL	NULL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25315536	25315536	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25315536	25315536	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2375	p.R792H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
GLIS1	148979	genome.wustl.edu	36	1	53833160	53833160	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	53833160	53833160	C	T	SNP	GLIS1	NM_147193	human	genbank	54_36p	-1	validated	missense	c.4	p.A2T	0.248	NULL	superfamily_SSF57667,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
PCDH15	65217	genome.wustl.edu	36	10	55257274	55257274	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	55257274	55257274	C	T	SNP	PCDH15	NM_033056	human	genbank	54_36p	-1	reviewed	missense	c.4252	p.A1418T	0.977	NULL	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like,HMMPfam_Cadherin	-	no_errors
USP24	23358	genome.wustl.edu	36	1	55361707	55361707	+	Splice_Site	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	55361707	55361707	C	T	SNP	USP24	NM_015306	human	genbank	54_36p	-1	validated	splice_site	c.3796+1	e33+1	1.000	-	-	-	no_errors
ACAN	176	genome.wustl.edu	36	15	87202088	87202088	+	Silent	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	87202088	87202088	C	T	SNP	ACAN	NM_013227	human	genbank	54_36p	+1	reviewed	silent	c.4926	p.S1642	0.969	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
FAM193A	8603	genome.wustl.edu	36	4	2668082	2668082	+	Silent	SNP	G	G	A			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	2668082	2668082	G	A	SNP	C4orf8	NM_003704	human	genbank	54_36p	+1	validated	silent	c.2598	p.T866	0.983	NULL	NULL	-	no_errors
MEGF8	1954	genome.wustl.edu	36	19	47564893	47564893	+	Silent	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47564893	47564893	C	T	SNP	MEGF8	NM_001410	human	genbank	54_36p	+1	validated	silent	c.6339	p.D2113	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMSmart_EGF_CA,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_PSI,HMMSmart_EGF,HMMPfam_Kelch_1,superfamily_Gal_oxid_central,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_SSF57196	-	no_errors
TIAM2	26230	genome.wustl.edu	36	6	155614769	155614769	+	Splice_Site	SNP	A	A	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	155614769	155614769	A	T	SNP	TIAM2	NM_012454	human	genbank	54_36p	+1	reviewed	splice_site	c.4061-2	e20-2	1.000	-	-	-	no_errors
TET1	80312	genome.wustl.edu	36	10	70075610	70075610	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	70075610	70075610	C	T	SNP	TET1	NM_030625	human	genbank	54_36p	+1	validated	missense	c.3118	p.P1040S	0.000	NULL	HMMPfam_zf-CXXC	-	no_errors
MYO16	23026	genome.wustl.edu	36	13	108177890	108177890	+	Silent	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	108177890	108177890	C	T	SNP	MYO16	NM_015011	human	genbank	54_36p	+1	validated	silent	c.399	p.A133	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMPfam_IQ	-	no_errors
PTPRN	5798	genome.wustl.edu	36	2	219875113	219875113	+	Silent	SNP	A	A	C			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	219875113	219875113	A	C	SNP	PTPRN	NM_002846	human	genbank	54_36p	-1	reviewed	silent	c.984	p.A328	0.007	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
ARHGAP4	393	genome.wustl.edu	36	X	152840072	152840072	+	Silent	SNP	G	G	A			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	152840072	152840072	G	A	SNP	ARHGAP4	NM_001666	human	genbank	54_36p	-1	validated	silent	c.375	p.A125	0.067	NULL	HMMPfam_RhoGAP,HMMSmart_RhoGAP,HMMPfam_FCH,HMMSmart_FCH,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,superfamily_Rho_GAP	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25313307	25313307	+	Splice_Site	SNP	A	A	C			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25313307	25313307	A	C	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	splice_site	c.2478+2	e20+2	0.998	-	-	-	no_errors
CUEDC1	404093	genome.wustl.edu	36	17	53317592	53317592	+	Silent	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	53317592	53317592	C	T	SNP	CUEDC1	NM_017949	human	genbank	54_36p	-1	provisional	silent	c.333	p.P111	0.274	NULL	superfamily_UBA-like,HMMPfam_CUE,HMMSmart_SM00546	-	no_errors
IDH2	3418	genome.wustl.edu	36	15	88432842	88432842	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	88432842	88432842	C	T	SNP	IDH2	NM_002168	human	genbank	54_36p	-1	reviewed	missense	c.515	p.R172K	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
CRISPLD1	83690	genome.wustl.edu	36	8	76092224	76092224	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	76092224	76092224	G	A	SNP	CRISPLD1	NM_031461	human	genbank	54_36p	+1	validated	missense	c.1111	p.G371S	1.000	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain	HMMSmart_SM00198,HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain,HMMPfam_SCP,superfamily_PR-1-like,PatternScan_CRISP_2	-	no_errors
ENSG00000212912	0	genome.wustl.edu	36	NT_113901	31029	31029	+	Silent	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113901	31029	31029	C	T	SNP	ENSG00000212912	ENST00000391599	human	ensembl	54_36p	-1	known	silent	c.243	p.A81	NULL	NULL	NULL	-	no_errors
uc002bxn.1	0	genome.wustl.edu	36	15	100110525	100110525	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	100110525	100110525	G	C	SNP	uc002bxn.1	ENST00000344371	human	ensembl	54_36p	+1	known	missense	c.505	p.G169R	0.971	NULL	NULL	-	no_stop_codon
MPI	4351	genome.wustl.edu	36	15	72972172	72972174	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72972172	72972174	GAG	-	DEL	MPI	NM_002435	human	genbank	54_36p	+1	reviewed	in_frame_del	c.463_465	p.E156in_frame_del	0.983:0.998:1.000	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins	HMMPfam_PMI_typeI,superfamily_RmlC-like cupins,PatternScan_PMI_I_1,PatternScan_PMI_I_2	-	no_errors
DOPEY2	9980	genome.wustl.edu	36	21	36522005	36522005	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	36522005	36522005	C	A	SNP	DOPEY2	NM_005128	human	genbank	54_36p	+1	validated	missense	c.1625	p.P542H	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
MUC4	4585	genome.wustl.edu	36	3	196999858	196999858	+	Silent	SNP	G	G	A			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	196999858	196999858	G	A	SNP	MUC4	ENST00000405167	human	ensembl	54_36p	-1	known	silent	c.2988	p.T996	0.015	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
EPAS1	2034	genome.wustl.edu	36	2	46456394	46456394	+	Silent	SNP	C	C	T			TCGA-AB-2898-03A-01W-0733-08	TCGA-AB-2898-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	46456394	46456394	C	T	SNP	EPAS1	NM_001430	human	genbank	54_36p	+1	validated	silent	c.948	p.Y316	0.901	superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH,HMMSmart_PAS,superfamily_SSF55785,HMMPfam_PAS_3,HMMSmart_PAC,HMMPfam_HIF-1a_CTAD	-	no_errors
