Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	G	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835H	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
GAS2L1	10634	genome.wustl.edu	36	22	28034597	28034597	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	28034597	28034597	C	A	SNP	GAS2L1	NM_152237	human	genbank	54_36p	+1	reviewed	missense	c.502	p.L168M	0.991	NULL	superfamily_Calponin-homology,HMMPfam_CH,HMMSmart_CH,HMMPfam_GAS2,HMMSmart_GAS2	-	no_errors
KCNE3	10008	genome.wustl.edu	36	11	73846174	73846174	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	73846174	73846174	T	C	SNP	KCNE3	NM_005472	human	genbank	54_36p	-1	reviewed	missense	c.83	p.N28S	0.512	NULL	NULL	-	no_errors
LOC392301	392301	genome.wustl.edu	36	9	32323505	32323505	+	RNA	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	32323505	32323505	C	T	SNP	LOC392301	XR_017331	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
CIC	23152	genome.wustl.edu	36	19	47483358	47483358	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	47483358	47483358	G	A	SNP	CIC	NM_015125	human	genbank	54_36p	+1	validated	missense	c.499	p.G167R	1.000	NULL	superfamily_HMG-box,HMMSmart_HMG,HMMPfam_HMG_box	-	no_errors
AFF4	27125	genome.wustl.edu	36	5	132256676	132256676	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	132256676	132256676	T	G	SNP	AFF4	NM_014423	human	genbank	54_36p	-1	validated	missense	c.2341	p.K781Q	1.000	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
CCDC141	285025	genome.wustl.edu	36	2	179410025	179410025	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179410025	179410025	C	T	SNP	CCDC141	NM_173648	human	genbank	54_36p	-1	provisional	missense	c.2441	p.R814Q	0.919	NULL	HMMPfam_I-set	-	no_errors
MBTPS1	8720	genome.wustl.edu	36	16	82658861	82658861	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	82658861	82658861	C	T	SNP	MBTPS1	NM_003791	human	genbank	54_36p	-1	reviewed	missense	c.2140	p.V714M	0.992	NULL	PatternScan_SUBTILASE_ASP,superfamily_Pept_S8_S53,HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER	-	no_errors
VWF	7450	genome.wustl.edu	36	12	6032124	6032124	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	6032124	6032124	C	G	SNP	VWF	NM_000552	human	genbank	54_36p	-1	reviewed	missense	c.2032	p.E678Q	0.302	superfamily_Serine proterase inhibitors,HMMPfam_TIL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL,superfamily_vWA-like	-	no_errors
MYBPH	4608	genome.wustl.edu	36	1	201407186	201407189	+	Frame_Shift_Del	DEL	AGTG	AGTG	-			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	AGTG	AGTG			AGTG	AGTG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	201407186	201407189	AGTG	-	DEL	MYBPH	NM_004997	human	genbank	54_36p	-1	validated	frame_shift_del	c.741_738	p.T247fs	0.000:0.030:0.067:0.118	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,superfamily_SSF48726	-	no_errors
KCNU1	157855	genome.wustl.edu	36	8	36785454	36785454	+	Silent	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	36785454	36785454	G	A	SNP	KCNU1	NM_001031836	human	genbank	54_36p	+1	validated	silent	c.717	p.A239	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors
ZBTB7B	51043	genome.wustl.edu	36	1	153254070	153254070	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153254070	153254070	G	A	SNP	ZBTB7B	NM_015872	human	genbank	54_36p	+1	validated	missense	c.310	p.E104K	1.000	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB	superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_BTB,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667,HMMPfam_zf-C2H2	-	no_errors
ATP2B3	492	genome.wustl.edu	36	X	152467453	152467453	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	152467453	152467453	G	T	SNP	ATP2B3	NM_001001344	human	genbank	54_36p	+1	reviewed	missense	c.1285	p.V429F	1.000	superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase	HMMPfam_Cation_ATPase_N,superfamily_Calcium ATPase transmembrane domain M,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,HMMPfam_Hydrolase,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Cation_ATPase_C	-	no_errors
PRDX2	7001	genome.wustl.edu	36	19	12773061	12773061	+	Silent	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	12773061	12773061	G	A	SNP	PRDX2	NM_005809	human	genbank	54_36p	-1	reviewed	silent	c.15	p.N5	0.670	superfamily_Thioredoxin-like	superfamily_Thioredoxin-like,HMMPfam_AhpC-TSA,HMMPfam_1-cysPrx_C	-	no_errors
GTF2H1	2965	genome.wustl.edu	36	11	18319710	18319710	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	18319710	18319710	G	A	SNP	GTF2H1	NM_005316	human	genbank	54_36p	+1	validated	missense	c.817	p.E273K	1.000	NULL	superfamily_PH domain-like,HMMPfam_TFIIH_BTF_p62_N,HMMPfam_BSD,HMMSmart_SM00751	-	no_errors
WEE2	494551	genome.wustl.edu	36	7	141075826	141075826	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	141075826	141075826	A	T	SNP	WEE2	NM_001105558	human	genbank	54_36p	+1	validated	missense	c.1562	p.Q521L	0.043	NULL	superfamily_Kinase_like,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
MUC4	4585	genome.wustl.edu	36	3	196999690	196999690	+	Silent	SNP	A	A	C			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	196999690	196999690	A	C	SNP	MUC4	ENST00000405167	human	ensembl	54_36p	-1	known	silent	c.3156	p.G1052	0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
CKAP4	10970	genome.wustl.edu	36	12	105157456	105157456	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	105157456	105157456	G	A	SNP	CKAP4	NM_006825	human	genbank	54_36p	-1	validated	missense	c.1285	p.R429C	0.000	NULL	NULL	-	no_errors
ACTRT2	140625	genome.wustl.edu	36	1	2928268	2928270	+	In_Frame_Del	DEL	AGA	AGA	-			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	AGA	AGA			AGA	AGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	2928268	2928270	AGA	-	DEL	ACTRT2	NM_080431	human	genbank	54_36p	+1	reviewed	in_frame_del	c.158_160	p.K55in_frame_del	0.991:1.000:1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,superfamily_Actin-like ATPase domain	-	no_errors
ATF7IP	55729	genome.wustl.edu	36	12	14510735	14510738	+	Frame_Shift_Del	DEL	ACAA	ACAA	-			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	ACAA	ACAA			ACAA	ACAA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	14510735	14510738	ACAA	-	DEL	ATF7IP	NM_018179	human	genbank	54_36p	+1	validated	frame_shift_del	c.2806_2809	p.N937fs	0.999:0.994:0.986:0.999	NULL	superfamily_Fibronectin type III,HMMPfam_fn3	-	no_errors
BIRC7	79444	genome.wustl.edu	36	20	61340401	61340401	+	Silent	SNP	G	G	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	61340401	61340401	G	A	SNP	BIRC7	NM_139317	human	genbank	54_36p	+1	reviewed	silent	c.567	p.V189	0.000	superfamily_Inhibitor of apoptosis (IAP) repeat	superfamily_Inhibitor of apoptosis (IAP) repeat,HMMSmart_SM00238,PatternScan_BIR_REPEAT_1,HMMPfam_BIR,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
TTC3	7267	genome.wustl.edu	36	21	37460160	37460160	+	Silent	SNP	C	C	T			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	37460160	37460160	C	T	SNP	TTC3	NM_001001894	human	genbank	54_36p	+1	validated	silent	c.3774	p.S1258	0.000	superfamily_SSF48452,superfamily_Spectrin	HMMPfam_TPR_1,HMMSmart_TPR,superfamily_SSF48452,superfamily_Spectrin,superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4	-	no_errors
SLC35A5	55032	genome.wustl.edu	36	3	113764955	113764955	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	113764955	113764955	C	A	SNP	SLC35A5	NM_017945	human	genbank	54_36p	+1	provisional	nonsense	c.15	p.C5*	0.046	NULL	superfamily_SSF103481,HMMPfam_Nuc_sug_transp	-	no_errors
NAGS	162417	genome.wustl.edu	36	17	39439595	39439595	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2910-03A-01W-0745-08	TCGA-AB-2910-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	39439595	39439595	G	C	SNP	NAGS	NM_153006	human	genbank	54_36p	+1	reviewed	missense	c.1088	p.S363T	1.000	superfamily_Aa_kinase,HMMPfam_DUF619	superfamily_Aa_kinase,HMMPfam_DUF619	-	no_errors
