Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DBX2	440097	genome.wustl.edu	36	12	43696557	43696557	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	43696557	43696557	G	A	SNP	DBX2	NM_001004329	human	genbank	54_36p	-1	validated	missense	c.799	p.R267W	0.001	NULL	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
NOTCH2	4853	genome.wustl.edu	36	1	120340827	120340827	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	120340827	120340827	T	A	SNP	NOTCH2	ENST00000401649	human	ensembl	54_36p	-1	known	missense	c.817	p.T273S	0.007	NULL	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
SCN1A	6323	genome.wustl.edu	36	2	166609962	166609962	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	166609962	166609962	C	T	SNP	SCN1A	NM_006920	human	genbank	54_36p	-1	validated	missense	c.1499	p.R500Q	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,HMMSmart_IQ,HMMPfam_IQ,PatternScan_RIBONUCLEASE_P	-	no_errors
DHX33	56919	genome.wustl.edu	36	17	5297882	5297882	+	Silent	SNP	G	G	C			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	5297882	5297882	G	C	SNP	DHX33	NM_020162	human	genbank	54_36p	-1	reviewed	silent	c.1290	p.T430	0.017	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	83233	83233	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	83233	83233	C	T	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	missense	c.1243	p.G415R	NULL	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
GPR78	27201	genome.wustl.edu	36	4	8639798	8639798	+	Silent	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	8639798	8639798	G	A	SNP	GPR78	NM_080819	human	genbank	54_36p	+1	validated	silent	c.900	p.P300	1.000	superfamily_Family A G protein-coupled receptor-like	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_errors
ZNF302	55900	genome.wustl.edu	36	19	39867717	39867717	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	39867717	39867717	G	A	SNP	ZNF302	NM_001012320	human	genbank	54_36p	+1	validated	missense	c.935	p.R312H	0.830	superfamily_SSF57667	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
LOC440225	440225	genome.wustl.edu	36	15	19402952	19402952	+	RNA	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	19402952	19402952	C	T	SNP	LOC440225	XR_042334	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.999	-	-	-	pseudogene
MRM1	79922	genome.wustl.edu	36	17	32032646	32032646	+	Silent	SNP	A	A	G			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	32032646	32032646	A	G	SNP	MRM1	NM_024864	human	genbank	54_36p	+1	validated	silent	c.294	p.P98	0.202	superfamily_L30e-like,HMMPfam_SpoU_sub_bind	superfamily_L30e-like,HMMPfam_SpoU_sub_bind,superfamily_alpha/beta knot,HMMPfam_SpoU_methylase	-	no_errors
UNC5D	137970	genome.wustl.edu	36	8	35663640	35663640	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	35663640	35663640	G	A	SNP	UNC5D	NM_080872	human	genbank	54_36p	+1	validated	missense	c.940	p.V314I	0.971	superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1	superfamily_SSF48726,HMMSmart_IGc2,HMMPfam_ig,superfamily_TSP1,HMMSmart_TSP1,HMMPfam_TSP_1,PatternScan_SERPIN,HMMPfam_ZU5,superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
RGPD8	727851	genome.wustl.edu	36	2	112864211	112864211	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	112864211	112864211	C	T	SNP	RGPD8	XM_001722279	human	genbank	54_36p	-1	model	missense	c.2782	p.E928K	0.936	NULL	superfamily_TPR-like,HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_PH domain-like,HMMSmart_SM00160,HMMPfam_Ran_BP1,HMMPfam_GRIP,HMMSmart_SM00755	-	no_errors
MST1P9	11223	genome.wustl.edu	36	1	16956369	16956369	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16956369	16956369	A	C	SNP	MSTP9	ENST00000334998	human	ensembl	54_36p	-1	known	missense	c.2015	p.F672C	1.000	superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	HMMPfam_PAN_1,superfamily_Hairpin loop containing domain-like,HMMSmart_SM00473,HMMSmart_SM00130,HMMPfam_Kringle,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Trypsin-like serine proteases,HMMSmart_SM00020,HMMPfam_Trypsin	-	no_errors
LOC100132733	100132733	genome.wustl.edu	36	1	142054679	142054679	+	Missense_Mutation	SNP	T	T	G	rs77065172		TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	142054679	142054679	T	G	SNP	LOC100132733	XM_001715342	human	genbank	54_36p	-1	model	missense	c.437	p.Q146P	0.007	NULL	NULL	-	no_errors
COL12A1	1303	genome.wustl.edu	36	6	75880038	75880038	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	75880038	75880038	G	A	SNP	COL12A1	NM_004370	human	genbank	54_36p	-1	reviewed	missense	c.7840	p.P2614S	1.000	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
LOC728888	728888	genome.wustl.edu	36	16	29322576	29322576	+	RNA	SNP	G	G	C			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	29322576	29322576	G	C	SNP	LOC728888	XR_015889	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.106	-	-	-	no_errors
LTBP3	4054	genome.wustl.edu	36	11	65077003	65077003	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65077003	65077003	C	T	SNP	LTBP3	NM_021070	human	genbank	54_36p	-1	validated	missense	c.1090	p.V364M	1.000	superfamily_SSF57196,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA	superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_1,superfamily_Fibril-assoc,HMMPfam_TB,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
PAX7	5081	genome.wustl.edu	36	1	18902215	18902215	+	Silent	SNP	G	G	A	rs71451018	byCluster;byFrequency;by1000genomes	TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	18902215	18902215	G	A	SNP	PAX7	NM_002584	human	genbank	54_36p	+1	reviewed	silent	c.993	p.P331	0.989	NULL	HMMPfam_PAX,HMMSmart_SM00351,superfamily_Homeodomain-like,PatternScan_PAIRED_1,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
BAIAP2L1	55971	genome.wustl.edu	36	7	97774983	97774983	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	97774983	97774983	C	T	SNP	BAIAP2L1	NM_018842	human	genbank	54_36p	-1	provisional	missense	c.1117	p.E373K	0.993	superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	HMMPfam_IMD,superfamily_SH3,HMMSmart_SH3,HMMPfam_SH3_2	-	no_errors
GPR15	2838	genome.wustl.edu	36	3	99733869	99733869	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	99733869	99733869	C	T	SNP	GPR15	NM_005290	human	genbank	54_36p	+1	provisional	missense	c.302	p.T101M	0.953	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CLEC18B	497190	genome.wustl.edu	36	16	73002364	73002364	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	73002364	73002364	G	A	SNP	CLEC18B	NM_001011880	human	genbank	54_36p	-1	validated	missense	c.1054	p.R352C	1.000	HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C	superfamily_PR-1-like,HMMSmart_SM00198,HMMPfam_SCP,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,superfamily_C-type lectin-like,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
DIAPH2	1730	genome.wustl.edu	36	X	96571382	96571382	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	96571382	96571382	C	T	SNP	DIAPH2	NM_006729	human	genbank	54_36p	+1	reviewed	missense	c.3223	p.R1075W	1.000	NULL	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2,HMMPfam_Drf_DAD	-	no_errors
C9orf174	100499483	genome.wustl.edu	36	9	99124969	99124969	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	99124969	99124969	G	A	SNP	KIAA1529	NM_020893	human	genbank	54_36p	+1	predicted	missense	c.1742	p.R581H	0.998	NULL	NULL	-	no_errors
PSD	5662	genome.wustl.edu	36	10	104166461	104166461	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	104166461	104166461	C	T	SNP	PSD	NM_002779	human	genbank	54_36p	-1	provisional	missense	c.325	p.A109T	1.000	NULL	HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
SON	6651	genome.wustl.edu	36	21	33849161	33849161	+	Silent	SNP	T	T	C			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	33849161	33849161	T	C	SNP	SON	NM_138927	human	genbank	54_36p	+1	reviewed	silent	c.5754	p.V1918	0.016	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_dsrm,superfamily_dsRNA-binding domain-like	-	no_errors
ENSG00000196703	0	genome.wustl.edu	36	11	123591493	123591493	+	Silent	SNP	G	G	C			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	123591493	123591493	G	C	SNP	ENSG00000196703	ENST00000334412	human	ensembl	54_36p	+1	known	silent	c.861	p.S287	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	-	no_start_codon:no_stop_codon
KRAS	3845	genome.wustl.edu	36	12	25289478	25289478	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	T	T			T	T	Verified	Valid	Somatic		Capture				Illumina GAIIx	12	25289478	25289478	T	C	SNP	KRAS					-1	reviewed	missense	c.108	p.I36M	1	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	HMMSmart_SM00173,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00175,HMMPfam_Ras,HMMSmart_SM00174,HMMSmart_SM00176	-	NA
OGFOD2	79676	genome.wustl.edu	36	12	122029621	122029621	+	Silent	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	122029621	122029621	C	T	SNP	OGFOD2	NM_024623	human	genbank	54_36p	+1	provisional	silent	c.648	p.H216	0.925	HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy	HMMSmart_P4Hc,HMMPfam_2OG-FeII_Oxy	-	no_errors
OR7D4	125958	genome.wustl.edu	36	19	9185994	9185994	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9185994	9185994	T	A	SNP	OR7D4	NM_001005191	human	genbank	54_36p	-1	provisional	missense	c.520	p.I174F	0.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
LILRA3	11026	genome.wustl.edu	36	19	59495562	59495562	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59495562	59495562	G	T	SNP	LILRA3	NM_006865	human	genbank	54_36p	-1	provisional	missense	c.74	p.P25H	0.009	superfamily_SSF48726	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
MST1P9	11223	genome.wustl.edu	36	1	16956665	16956665	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	16956665	16956665	G	A	SNP	MSTP9	ENST00000334998	human	ensembl	54_36p	-1	known	nonsense	c.1843	p.R615*	0.908	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_PAN_1,HMMSmart_SM00473,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,superfamily_Hairpin loop containing domain-like	-	no_errors
COBL	23242	genome.wustl.edu	36	7	51060543	51060543	+	Silent	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	51060543	51060543	C	T	SNP	COBL	NM_015198	human	genbank	54_36p	-1	validated	silent	c.3525	p.E1175	0.999	NULL	HMMPfam_Cobl,HMMPfam_WH2,HMMSmart_SM00246	-	no_errors
COL9A3	1299	genome.wustl.edu	36	20	60942370	60942370	+	Silent	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	60942370	60942370	C	T	SNP	COL9A3	NM_001853	human	genbank	54_36p	+1	validated	silent	c.1896	p.D632	0.991	HMMPfam_Collagen	HMMPfam_Collagen	-	no_errors
GJB3	2707	genome.wustl.edu	36	1	35023596	35023596	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	35023596	35023596	C	T	SNP	GJB3	NM_001005752	human	genbank	54_36p	+1	reviewed	nonsense	c.646	p.R216*	0.009	NULL	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
RBMXL1	494115	genome.wustl.edu	36	1	89221234	89221234	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	89221234	89221234	A	G	SNP	RBMXL1	ENST00000340396	human	ensembl	54_36p	-1	known	missense	c.254	p.M85T	1.000	NULL	NULL	-	no_errors
SETBP1	26040	genome.wustl.edu	36	18	40785905	40785905	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	40785905	40785905	G	A	SNP	SETBP1	NM_015559	human	genbank	54_36p	+1	validated	missense	c.2440	p.D814N	1.000	NULL	HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
SLC7A13	157724	genome.wustl.edu	36	8	87311171	87311171	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	87311171	87311171	C	T	SNP	SLC7A13	NM_138817	human	genbank	54_36p	-1	validated	missense	c.452	p.R151H	0.114	NULL	HMMPfam_AA_permease	-	no_errors
PDC	5132	genome.wustl.edu	36	1	184682217	184682217	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	184682217	184682217	C	A	SNP	PDC	NM_002597	human	genbank	54_36p	-1	reviewed	missense	c.177	p.R59S	0.996	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd	HMMPfam_Phosducin,superfamily_Thiordxn-like_fd	-	no_errors
LOC390834	390834	genome.wustl.edu	36	18	14382844	14382844	+	RNA	SNP	C	C	G			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	14382844	14382844	C	G	SNP	LOC390834	XR_017132	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC100128936	100128936	genome.wustl.edu	36	3	61703497	61703497	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	61703497	61703497	G	A	SNP	LOC100128936	XM_001726108	human	genbank	54_36p	-1	model	missense	c.74	p.A25V	1.000	HMMPfam_Ribosomal_L1,superfamily_Ribosomal protein L1	HMMPfam_Ribosomal_L1,superfamily_Ribosomal protein L1,PatternScan_RIBOSOMAL_L1	-	pseudogene
MED12	9968	genome.wustl.edu	36	X	70263942	70263942	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2917-03A-01W-0732-08	TCGA-AB-2917-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	70263942	70263942	C	T	SNP	MED12	NM_005120	human	genbank	54_36p	+1	validated	missense	c.2881	p.R961W	1.000	NULL	HMMPfam_Med12	-	no_errors
