Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
HNF4G	3174	genome.wustl.edu	36	8	76626226	76626226	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	76626226	76626226	A	T	SNP	HNF4G	NM_004133	human	genbank	54_36p	+1	validated	missense	c.401	p.D134V	0.999	superfamily_Str_ncl_receptor	HMMSmart_ZnF_C4,HMMPfam_zf-C4,superfamily_SSF57716,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Str_ncl_receptor,HMMSmart_HOLI,HMMPfam_Hormone_recep	-	no_errors
KCNU1	157855	genome.wustl.edu	36	8	36895547	36895547	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	36895547	36895547	G	A	SNP	KCNU1	NM_001031836	human	genbank	54_36p	+1	validated	missense	c.2570	p.R857Q	0.781	NULL	HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors
LAMB3	3914	genome.wustl.edu	36	1	207872639	207872639	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	207872639	207872639	C	T	SNP	LAMB3	NM_000228	human	genbank	54_36p	-1	reviewed	missense	c.734	p.R245H	0.926	HMMSmart_LamNT,HMMPfam_Laminin_N	HMMSmart_LamNT,HMMPfam_Laminin_N,superfamily_Gal_bind_like,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_SSF57196,PatternScan_EGF_1,PatternScan_EGF_LAM_1,PatternScan_EGF_2	-	no_errors
MAP1B	4131	genome.wustl.edu	36	5	71531412	71531412	+	Silent	SNP	C	C	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	71531412	71531412	C	A	SNP	MAP1B	NM_005909	human	genbank	54_36p	+1	validated	silent	c.6474	p.T2158	0.567	NULL	HMMPfam_MAP1B_neuraxin,PatternScan_MAP1B_NEURAXIN	-	no_errors
MT-ND5	0	genome.wustl.edu	36	MT	13501	13501	+	Silent	SNP	T	T	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	13501	13501	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	silent	c.1164	p.G388	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors
CHIC2	26511	genome.wustl.edu	36	4	54575000	54575000	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	54575000	54575000	C	T	SNP	CHIC2	NM_012110	human	genbank	54_36p	-1	reviewed	missense	c.374	p.R125K	1.000	HMMPfam_Erf4	HMMPfam_Erf4	-	no_errors
MED25	81857	genome.wustl.edu	36	19	55030655	55030655	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55030655	55030655	C	G	SNP	MED25	NM_030973	human	genbank	54_36p	+1	validated	missense	c.1727	p.A576G	0.877	NULL	NULL	-	no_errors
PCDHB1	29930	genome.wustl.edu	36	5	140413379	140413379	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140413379	140413379	G	A	SNP	PCDHB1	NM_013340	human	genbank	54_36p	+1	reviewed	missense	c.2140	p.V714I	0.032	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
EPB41L4B	54566	genome.wustl.edu	36	9	111057675	111057675	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	111057675	111057675	G	A	SNP	EPB41L4B	NM_019114	human	genbank	54_36p	-1	validated	missense	c.1106	p.T369M	0.016	superfamily_PH domain-like,HMMPfam_FERM_C	HMMSmart_SM00295,superfamily_Ubiquitin-like,HMMPfam_FERM_N,superfamily_Second domain of FERM,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_PH domain-like,HMMPfam_FERM_C,HMMPfam_FA	-	no_errors
LOC646817	646817	genome.wustl.edu	36	1	92312797	92312799	+	In_Frame_Del	DEL	CAT	CAT	-			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	CAT	CAT			CAT	CAT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	92312797	92312799	CAT	-	DEL	LOC646817	XM_929774	human	genbank	54_36p	-1	model	in_frame_del	c.760_758	p.D253in_frame_del	0.996:0.997:1.000	NULL	HMMPfam_NAP	-	no_errors
VCAN	1462	genome.wustl.edu	36	5	82868814	82868814	+	Silent	SNP	T	T	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	82868814	82868814	T	C	SNP	VCAN	NM_004385	human	genbank	54_36p	+1	validated	silent	c.4236	p.N1412	0.996	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
PLG	5340	genome.wustl.edu	36	6	161055850	161055850	+	Silent	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	161055850	161055850	C	T	SNP	PLG	NM_000301	human	genbank	54_36p	+1	validated	silent	c.582	p.D194	0.917	superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle	HMMPfam_PAN_1,superfamily_SSF57414,HMMSmart_PAN_AP,superfamily_Kringle-like,HMMSmart_KR,HMMPfam_Kringle,PatternScan_KRINGLE_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
KCNK13	56659	genome.wustl.edu	36	14	89721002	89721002	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	89721002	89721002	C	A	SNP	KCNK13	NM_022054	human	genbank	54_36p	+1	reviewed	missense	c.1129	p.Q377K	0.625	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans_2	-	no_errors
MTA2	9219	genome.wustl.edu	36	11	62120701	62120701	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62120701	62120701	T	C	SNP	MTA2	NM_004739	human	genbank	54_36p	-1	reviewed	missense	c.866	p.D289G	1.000	HMMSmart_SANT,HMMPfam_Myb_DNA-binding	PatternScan_GATA_ZN_FINGER_1,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_Myb_DNA-binding,superfamily_SSF57716,HMMSmart_ZnF_GATA,HMMPfam_GATA	-	no_errors
FOXR1	283150	genome.wustl.edu	36	11	118356518	118356518	+	Silent	SNP	C	C	G			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	118356518	118356518	C	G	SNP	FOXR1	NM_181721	human	genbank	54_36p	+1	reviewed	silent	c.720	p.G240	0.011	HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head	PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,HMMSmart_FH,superfamily_SSF46785,HMMPfam_Fork_head	-	no_errors
ARID4B	51742	genome.wustl.edu	36	1	233412089	233412089	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	233412089	233412089	T	A	SNP	ARID4B	NM_016374	human	genbank	54_36p	-1	reviewed	missense	c.2768	p.D923V	1.000	NULL	HMMSmart_SM00333,HMMPfam_RBB1NT,superfamily_ARID-like,HMMPfam_ARID,HMMSmart_SM00501	-	no_errors
TBX20	57057	genome.wustl.edu	36	7	35251099	35251099	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	35251099	35251099	T	C	SNP	TBX20	NM_001077653	human	genbank	54_36p	-1	validated	missense	c.641	p.D214G	1.000	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506275	27506276	+	In_Frame_Ins	INS	-	-	AATCAACGTAGAAGTACTCATTATCTTCCGGGG			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	13	27506275	27506276	-	AATCAACGTAGAAGTACTCATTATCTTCCGGGG	INS	FLT3					-1	reviewed	in_frame_ins	c.1781_1780	p.594in_frame_insSPEDNEYFYVD	1.000:1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	NA
NECAB2	54550	genome.wustl.edu	36	16	82585470	82585470	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	82585470	82585470	C	T	SNP	NECAB2	NM_019065	human	genbank	54_36p	+1	provisional	missense	c.659	p.A220V	0.001	NULL	superfamily_SSF47473,HMMSmart_EFh,HMMPfam_efhand,PatternScan_EF_HAND_1,superfamily_Dimer_A_B_barrel,HMMPfam_ABM	-	no_errors
CYP21A2	1589	genome.wustl.edu	36	6	32114865	32114865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32114865	32114865	G	A	SNP	CYP21A2	NM_000500	human	genbank	54_36p	+1	reviewed	missense	c.308	p.R103K	0.003	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
ASXL3	80816	genome.wustl.edu	36	18	29517500	29517500	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	29517500	29517500	C	-	DEL	ASXL3	NM_030632	human	genbank	54_36p	+1	validated	frame_shift_del	c.849	p.L284fs	1.000	NULL	NULL	-	no_errors
FAT4	79633	genome.wustl.edu	36	4	126556077	126556077	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	126556077	126556077	G	A	SNP	FAT4	NM_024582	human	genbank	54_36p	+1	validated	missense	c.6509	p.G2170E	1.000	superfamily_Cadherin,HMMPfam_Cadherin	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_SSF57196,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,superfamily_ConA_like_lec_gl,HMMSmart_LamG,HMMPfam_Laminin_G_2,HMMPfam_EGF	-	no_errors
ENSG00000124399	0	genome.wustl.edu	36	4	43595902	43595902	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	43595902	43595902	G	A	SNP	ENSG00000124399	ENST00000244249	human	ensembl	54_36p	+1	known	missense	c.167	p.R56H	0.091	HMMPfam_NDUF_B4	HMMPfam_NDUF_B4	-	no_start_codon
CBX5	23468	genome.wustl.edu	36	12	52937580	52937580	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	52937580	52937580	C	T	SNP	CBX5	NM_012117	human	genbank	54_36p	-1	reviewed	nonsense	c.122	p.W41*	1.000	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1	superfamily_Chromo domain-like,HMMSmart_SM00298,HMMPfam_Chromo,PatternScan_CHROMO_1,HMMSmart_SM00300,HMMPfam_Chromo_shadow	-	no_errors
CASKIN2	57513	genome.wustl.edu	36	17	71010791	71010791	+	Silent	SNP	G	G	A			TCGA-AB-2922-03A-01W-0745-08	TCGA-AB-2922-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	71010791	71010791	G	A	SNP	CASKIN2	NM_020753	human	genbank	54_36p	-1	validated	silent	c.1959	p.N653	0.459	NULL	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_SAM/Pointed domain,HMMPfam_SH3_2	-	no_errors
