Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
UBE2R2	54926	genome.wustl.edu	36	9	33907176	33907178	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	GAG	GAG			GAG	GAG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33907176	33907178	GAG	-	DEL	UBE2R2	NM_017811	human	genbank	54_36p	+1	reviewed	in_frame_del	c.658_660	p.E223in_frame_del	1.000:1.000:1.000	NULL	superfamily_UBC-like,HMMSmart_SM00212,HMMPfam_UQ_con,PatternScan_UBIQUITIN_CONJUGAT_1	-	no_errors
LARS	51520	genome.wustl.edu	36	5	145524130	145524130	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	145524130	145524130	G	C	SNP	LARS	NM_020117	human	genbank	54_36p	-1	reviewed	missense	c.530	p.A177G	1.000	superfamily_Nucleotidylyl transferase	superfamily_Nucleotidylyl transferase,PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,HMMPfam_tRNA-synt_1g,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1	-	no_errors
MT-ND3	0	genome.wustl.edu	36	MT	10399	10399	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	10399	10399	G	A	SNP	MT-ND3	ENST00000361227	human	ensembl	54_36p	+1	known	missense	c.340	p.A114T	NULL	NULL	HMMPfam_Oxidored_q4	-	no_stop_codon:bad_bp_length_for_coding_region
LOC100133937	100133937	genome.wustl.edu	36	8	21935209	21935209	+	RNA	SNP	A	A	G			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	21935209	21935209	A	G	SNP	LOC100133937	XR_037259	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC392787	392787	genome.wustl.edu	36	7	128340450	128340450	+	RNA	SNP	C	C	T			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	128340450	128340450	C	T	SNP	LOC392787	XR_017429	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.881	-	-	-	pseudogene
XIRP1	165904	genome.wustl.edu	36	3	39203923	39203923	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	39203923	39203923	C	T	SNP	XIRP1	NM_194293	human	genbank	54_36p	-1	provisional	missense	c.2018	p.R673H	0.000	NULL	HMMPfam_Xin	-	no_errors
RABEPK	10244	genome.wustl.edu	36	9	127034731	127034731	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	127034731	127034731	G	T	SNP	RABEPK	NM_005833	human	genbank	54_36p	+1	provisional	missense	c.712	p.A238S	0.190	superfamily_Galactose oxidase central domain	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMPfam_Kelch_1	-	no_errors
NRAS	4893	genome.wustl.edu	36	1	115060267	115060267	+	Missense_Mutation	SNP	C	C	T	rs121434595		TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	115060267	115060267	C	T	SNP	NRAS	NM_002524	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13D	1.000	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO15A	51168	genome.wustl.edu	36	17	17981694	17981694	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	17981694	17981694	C	A	SNP	MYO15A	NM_016239	human	genbank	54_36p	+1	reviewed	missense	c.4851	p.N1617K	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2,HMMSmart_SM00295,superfamily_Second domain of FERM,HMMPfam_FERM_M	-	no_errors
ENSG00000212912	0	genome.wustl.edu	36	NT_113901	30892	30892	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113901	30892	30892	C	A	SNP	ENSG00000212912	ENST00000391599	human	ensembl	54_36p	-1	known	missense	c.380	p.R127L	NULL	NULL	NULL	-	no_errors
SLC17A9	63910	genome.wustl.edu	36	20	61059310	61059310	+	Silent	SNP	C	C	T			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	61059310	61059310	C	T	SNP	SLC17A9	NM_022082	human	genbank	54_36p	+1	validated	silent	c.330	p.L110	0.955	superfamily_MFS general substrate transporter,HMMPfam_MFS_1	superfamily_MFS general substrate transporter,HMMPfam_MFS_1,PatternScan_SUGAR_TRANSPORT_2	-	no_errors
HDAC4	9759	genome.wustl.edu	36	2	239676654	239676654	+	Silent	SNP	T	T	C			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	239676654	239676654	T	C	SNP	HDAC4	NM_006037	human	genbank	54_36p	-1	reviewed	silent	c.2361	p.T787	0.957	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase	-	no_errors
NELL1	4745	genome.wustl.edu	36	11	20915949	20915949	+	Silent	SNP	C	C	A			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	20915949	20915949	C	A	SNP	NELL1	NM_006157	human	genbank	54_36p	+1	reviewed	silent	c.1039	p.R347	0.995	HMMSmart_SM00214	HMMSmart_SM00210,HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_VWC,HMMSmart_SM00214,HMMSmart_SM00215,PatternScan_VWFC_1,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_EGF_1	-	no_errors
LOC727770	727770	genome.wustl.edu	36	1	141770280	141770280	+	RNA	SNP	A	A	T	rs2951565	byCluster;by2Hit2Allele;byHapMap	TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	141770280	141770280	A	T	SNP	LOC727770	XR_037208	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
DSG2	1829	genome.wustl.edu	36	18	27354841	27354841	+	Silent	SNP	T	T	G			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	27354841	27354841	T	G	SNP	DSG2	NM_001943	human	genbank	54_36p	+1	reviewed	silent	c.294	p.P98	0.573	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin	superfamily_Cadherin,HMMSmart_CA,HMMPfam_Cadherin,PatternScan_CADHERIN_1	-	no_errors
ASPHD1	253982	genome.wustl.edu	36	16	29820303	29820304	+	In_Frame_Ins	INS	-	-	GGT			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	29820303	29820304	-	GGT	INS	ASPHD1	NM_181718	human	genbank	54_36p	+1	validated	in_frame_ins	c.510_511	p.172in_frame_insG	0.998:0.997	NULL	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2932-03A-01W-0745-08	TCGA-AB-2932-11A-01W-0745-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
