Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC644637	644637	genome.wustl.edu	36	22	14725954	14725954	+	RNA	SNP	A	A	C			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	14725954	14725954	A	C	SNP	LOC644637	XR_017623	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
FLT3	2322	genome.wustl.edu	36	13	27506258	27506259	+	In_Frame_Ins	INS	-	-	TATTCATATTCTCTGAAATCAACG			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27506259	27506259	-	TATTCATATTCTCTGAAATCAACG	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1797	p.DLK599in_frame_insR*	1.000	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
FAM190A	401145	genome.wustl.edu	36	4	91453100	91453100	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	91453100	91453100	C	A	SNP	KIAA1680	NM_207491	human	genbank	54_36p	+1	validated	nonsense	c.1388	p.S463*	0.996	NULL	NULL	-	no_errors
FMN2	56776	genome.wustl.edu	36	1	238438049	238438049	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	238438049	238438049	T	C	SNP	FMN2	NM_020066	human	genbank	54_36p	+1	validated	missense	c.3743	p.V1248A	0.000	HMMSmart_SM00498,HMMPfam_Drf_FH1	PatternScan_LECTIN_LEGUME_BETA,HMMSmart_SM00498,HMMPfam_Drf_FH1,superfamily_Formin homology 2 domain (FH2 domain),HMMPfam_FH2	-	no_errors
AP3S1	1176	genome.wustl.edu	36	5	115230317	115230320	+	Frame_Shift_Del	DEL	AAGA	AAGA	-			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	AAGA	AAGA			AAGA	AAGA	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	115230317	115230320	AAGA	-	DEL	AP3S1	NM_001284	human	genbank	54_36p	+1	validated	frame_shift_del	c.121_124	p.K41fs	1.000:1.000:1.000:1.000	HMMPfam_Clat_adaptor_s,superfamily_SNARE-like	HMMPfam_Clat_adaptor_s,PatternScan_CLAT_ADAPTOR_S,superfamily_SNARE-like	-	no_errors
USP9X	8239	genome.wustl.edu	36	X	40885201	40885201	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	40885201	40885201	C	T	SNP	USP9X	NM_001039590	human	genbank	54_36p	+1	reviewed	missense	c.809	p.T270I	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
CELSR1	9620	genome.wustl.edu	36	22	45142337	45142337	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	45142337	45142337	C	T	SNP	CELSR1	NM_014246	human	genbank	54_36p	-1	reviewed	missense	c.8032	p.D2678N	0.996	HMMPfam_7tm_2	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,PatternScan_ASX_HYDROXYL,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2	-	no_errors
CROCC	9696	genome.wustl.edu	36	1	17138188	17138188	+	Silent	SNP	C	C	T			TCGA-AB-2942-03A-01W-0733-08	TCGA-AB-2942-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	17138188	17138188	C	T	SNP	CROCC	NM_014675	human	genbank	54_36p	+1	validated	silent	c.1572	p.I524	0.983	NULL	superfamily_Prefoldin	-	no_errors
