Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
IDH1	3417	genome.wustl.edu	36	2	208821357	208821357	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	208821357	208821357	C	T	SNP	IDH1	NM_005896	human	genbank	54_36p	-1	reviewed	missense	c.395	p.R132H	1.000	HMMPfam_Iso_dh,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	HMMPfam_Iso_dh,PatternScan_IDH_IMDH,superfamily_Isocitrate/Isopropylmalate dehydrogenase-like	-	no_errors
SPRR3	6707	genome.wustl.edu	36	1	151242517	151242517	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	151242517	151242517	G	A	SNP	SPRR3	NM_001097589	human	genbank	54_36p	+1	validated	missense	c.397	p.V133I	0.000	HMMPfam_Cornifin	HMMPfam_Cornifin	-	no_errors
KIT	3815	genome.wustl.edu	36	4	55294078	55294078	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	55294078	55294078	A	T	SNP	KIT	NM_000222	human	genbank	54_36p	+1	reviewed	missense	c.2447	p.D816V	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_IGc2,HMMSmart_IG,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490640	27490640	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490640	27490640	A	T	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2505	p.D835E	0.991	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
PEPD	5184	genome.wustl.edu	36	19	38594492	38594492	+	Silent	SNP	A	A	G			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	38594492	38594492	A	G	SNP	PEPD	NM_000285	human	genbank	54_36p	-1	validated	silent	c.744	p.G248	0.994	superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24	superfamily_SSF53092,HMMPfam_AMP_N,superfamily_Peptidase_M24_cat_core,HMMPfam_Peptidase_M24,PatternScan_PROLINE_PEPTIDASE	-	no_errors
ADAMTS12	81792	genome.wustl.edu	36	5	33673537	33673537	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	33673537	33673537	C	T	SNP	ADAMTS12	NM_030955	human	genbank	54_36p	-1	reviewed	missense	c.1790	p.R597H	0.082	HMMSmart_SM00209	"HMMPfam_Pep_M12B_propep,superfamily_Metalloproteases (""zincins"") catalytic domain,HMMPfam_Reprolysin,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ADAM_spacer1"	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	-	-			-	-	Verified	Valid	Somatic		Capture				Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
SDR42E1	93517	genome.wustl.edu	36	16	80590579	80590579	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	80590579	80590579	C	T	SNP	SDR42E1	NM_145168	human	genbank	54_36p	-1	validated	missense	c.820	p.G274S	1.000	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	superfamily_NAD(P)-bd,HMMPfam_3Beta_HSD	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
PLEKHG5	57449	genome.wustl.edu	36	1	6454237	6454237	+	Silent	SNP	C	C	T	rs114640097	by1000genomes	TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6454237	6454237	C	T	SNP	PLEKHG5	NM_198681	human	genbank	54_36p	-1	reviewed	silent	c.1410	p.L470	1.000	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	-	no_errors
SPACA1	81833	genome.wustl.edu	36	6	88820400	88820400	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	88820400	88820400	G	A	SNP	SPACA1	NM_030960	human	genbank	54_36p	+1	reviewed	missense	c.226	p.V76I	0.426	NULL	NULL	-	no_errors
C10orf120	399814	genome.wustl.edu	36	10	124447259	124447259	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	124447259	124447259	C	G	SNP	C10orf120	NM_001010912	human	genbank	54_36p	-1	predicted	missense	c.988	p.A330P	0.000	NULL	NULL	-	no_errors
POLA2	23649	genome.wustl.edu	36	11	64786408	64786412	+	Frame_Shift_Del	DEL	AATTG	AATTG	-			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	AATTG	AATTG			AATTG	AATTG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64786408	64786412	AATTG	-	DEL	POLA2	NM_002689	human	genbank	54_36p	+1	provisional	frame_shift_del	c.69_73	p.I24fs	0.000:0.000:0.000:0.004:0.836	HMMPfam_Pol_alpha_B_N	HMMPfam_Pol_alpha_B_N,HMMPfam_DNA_pol_E_B	-	no_errors
DTX4	23220	genome.wustl.edu	36	11	58705933	58705933	+	Silent	SNP	G	G	A			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	58705933	58705933	G	A	SNP	DTX4	NM_015177	human	genbank	54_36p	+1	validated	silent	c.357	p.K119	1.000	HMMPfam_WWE,HMMSmart_SM00678	HMMPfam_WWE,HMMSmart_SM00678,superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
TRAM1L1	133022	genome.wustl.edu	36	4	118225753	118225753	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	118225753	118225753	G	A	SNP	TRAM1L1	NM_152402	human	genbank	54_36p	-1	validated	missense	c.245	p.T82M	1.000	HMMPfam_TRAM1	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC,HMMPfam_TRAM1	-	no_errors
NBEAL1	65065	genome.wustl.edu	36	2	203753406	203753406	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	203753406	203753406	T	C	SNP	NBEAL1	NM_001099273	human	genbank	54_36p	+1	validated	missense	c.2564	p.M855T	1.000	superfamily_BEACH domain,HMMPfam_Beach	superfamily_PH domain-like,superfamily_BEACH domain,HMMPfam_Beach,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
OR4H12P	161271	genome.wustl.edu	36	14	19298264	19298264	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	19298264	19298264	G	A	SNP	OR4H12P	ENST00000316004	human	ensembl	54_36p	+1	known	missense	c.356	p.C119Y	0.100	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
GLB1L2	89944	genome.wustl.edu	36	11	133746865	133746865	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	133746865	133746865	G	A	SNP	GLB1L2	NM_138342	human	genbank	54_36p	+1	provisional	missense	c.1438	p.V480M	0.005	NULL	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat,PatternScan_GLYCOSYL_HYDROL_F35	-	no_errors
CARD18	59082	genome.wustl.edu	36	11	104515003	104515003	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2945-03A-01W-0733-08	TCGA-AB-2945-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	104515003	104515003	C	T	SNP	CARD18	NM_021571	human	genbank	54_36p	-1	validated	missense	c.20	p.R7H	0.000	HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD	HMMSmart_CARD,superfamily_DEATH_like,HMMPfam_CARD	-	no_errors
