Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
NBAS	51594	genome.wustl.edu	36	2	15333344	15333344	+	Silent	SNP	T	T	C			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	15333344	15333344	T	C	SNP	NBAS	NM_015909	human	genbank	54_36p	-1	validated	silent	c.5439	p.A1813	0.222	NULL	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
FAM47A	158724	genome.wustl.edu	36	X	34060095	34060095	+	Silent	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	34060095	34060095	G	A	SNP	FAM47A	NM_203408	human	genbank	54_36p	-1	predicted	silent	c.222	p.D74	0.004	NULL	NULL	-	no_errors
CCL16	6360	genome.wustl.edu	36	17	31332517	31332517	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	31332517	31332517	G	A	SNP	CCL16	NM_004590	human	genbank	54_36p	-1	reviewed	missense	c.53	p.T18I	0.001	NULL	HMMPfam_IL8,superfamily_Chemokine_IL8,HMMSmart_SCY,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
PLA2G4D	283748	genome.wustl.edu	36	15	40160574	40160574	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	40160574	40160574	G	A	SNP	PLA2G4D	NM_178034	human	genbank	54_36p	-1	validated	missense	c.1007	p.T336I	0.864	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like,HMMPfam_PLA2_B	-	no_errors
PCDHA1	56147	genome.wustl.edu	36	5	140147758	140147758	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140147758	140147758	G	A	SNP	PCDHA1	NM_018900	human	genbank	54_36p	+1	reviewed	missense	c.1699	p.A567T	0.018	superfamily_Cadherin-like	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
HPN	3249	genome.wustl.edu	36	19	40248006	40248006	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	40248006	40248006	C	T	SNP	HPN	NM_002151	human	genbank	54_36p	+1	provisional	missense	c.824	p.P275L	1.000	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin	PatternScan_SRCR_1,HMMPfam_Hepsin-SRCR,superfamily_Srcr_receptor,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PCDHB18	54660	genome.wustl.edu	36	5	140595772	140595772	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140595772	140595772	T	C	SNP	PCDHB18	ENST00000274705	human	ensembl	54_36p	+1	known	missense	c.1303	p.Y435H	0.998	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	HMMPfam_Cadherin_2,PatternScan_CADHERIN_1,superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	-	no_errors
COL7A1	1294	genome.wustl.edu	36	3	48583702	48583702	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	48583702	48583702	G	A	SNP	COL7A1	NM_000094	human	genbank	54_36p	-1	reviewed	missense	c.7082	p.A2361V	1.000	HMMPfam_Collagen	superfamily_vWA-like,HMMSmart_SM00327,HMMPfam_VWA,HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III,HMMPfam_Collagen,superfamily_BPTI-like,HMMPfam_Kunitz_BPTI,PatternScan_BPTI_KUNITZ_1	-	no_errors
PRPF4B	8899	genome.wustl.edu	36	6	4002321	4002321	+	Silent	SNP	C	C	G			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	4002321	4002321	C	G	SNP	PRPF4B	NM_003913	human	genbank	54_36p	+1	reviewed	silent	c.2634	p.T878	0.859	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
MT-CO2	0	genome.wustl.edu	36	MT	7920	7920	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	7920	7920	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	54_36p	+1	known	missense	c.334	p.D112N	NULL	HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	no_errors
ZNF254	9534	genome.wustl.edu	36	19	24080696	24080696	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	24080696	24080696	C	G	SNP	ZNF254	NM_203282	human	genbank	54_36p	+1	validated	missense	c.145	p.L49V	0.994	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
DNAJC7	7266	genome.wustl.edu	36	17	37387413	37387413	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37387413	37387413	C	T	SNP	DNAJC7	NM_003315	human	genbank	54_36p	-1	provisional	missense	c.1340	p.G447D	1.000	superfamily_Chaperone J-domain	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like,superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	-	no_errors
KLHL4	56062	genome.wustl.edu	36	X	86659948	86659948	+	Silent	SNP	T	T	C			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	86659948	86659948	T	C	SNP	KLHL4	NM_057162	human	genbank	54_36p	+1	reviewed	silent	c.396	p.D132	0.948	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
CHRNB2	1141	genome.wustl.edu	36	1	152810583	152810583	+	Silent	SNP	G	G	A			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152810583	152810583	G	A	SNP	CHRNB2	NM_000748	human	genbank	54_36p	+1	reviewed	silent	c.660	p.T220	0.999	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD	superfamily_Nicotinic receptor ligand binding domain-like,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_memb	-	no_errors
RPS3A	6189	genome.wustl.edu	36	4	152243488	152243488	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	152243488	152243488	C	T	SNP	RPS3A	NM_001006	human	genbank	54_36p	+1	reviewed	missense	c.370	p.H124Y	1.000	HMMPfam_Ribosomal_S3Ae	HMMPfam_Ribosomal_S3Ae,PatternScan_RIBOSOMAL_S3AE	-	no_errors
MYH6	4624	genome.wustl.edu	36	14	22944694	22944694	+	Nonsense_Mutation	SNP	G	G	C			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22944694	22944694	G	C	SNP	MYH6	NM_002471	human	genbank	54_36p	-1	validated	nonsense	c.327	p.Y109*	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
TAS1R1	80835	genome.wustl.edu	36	1	6559262	6559262	+	Silent	SNP	A	A	G			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	6559262	6559262	A	G	SNP	TAS1R1	NM_138697	human	genbank	54_36p	+1	reviewed	silent	c.1461	p.G487	0.016	superfamily_Periplasmic binding protein-like I	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
LOC100129218	100129218	genome.wustl.edu	36	12	51171752	51171752	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51171752	51171752	T	C	SNP	LOC100129218	XM_001718439	human	genbank	54_36p	+1	model	missense	c.997	p.F333L	1.000	NULL	NULL	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
ENSG00000103832	0	genome.wustl.edu	36	15	28880384	28880384	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2955-03A-01W-0733-08	TCGA-AB-2955-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	28880384	28880384	G	T	SNP	ENSG00000103832	ENST00000220188	human	ensembl	54_36p	+1	known	missense	c.790	p.A264S	0.951	NULL	NULL	-	no_stop_codon
