Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LRRC4B	94030	genome.wustl.edu	36	19	55714330	55714330	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	55714330	55714330	G	A	SNP	LRRC4B	NM_001080457	human	genbank	54_36p	-1	provisional	missense	c.452	p.T151M	0.913	superfamily_SSF52058,HMMSmart_LRR_TYP,HMMPfam_LRR_1	superfamily_SSF52058,HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT,superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IGc2	-	no_errors
MINPP1	9562	genome.wustl.edu	36	10	89258179	89258179	+	Silent	SNP	C	C	T			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	89258179	89258179	C	T	SNP	MINPP1	NM_004897	human	genbank	54_36p	+1	validated	silent	c.744	p.H248	0.978	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like	HMMPfam_Acid_phosphat_A,PatternScan_ER_TARGET,superfamily_Phosphoglycerate mutase-like	-	no_errors
SBF1	6305	genome.wustl.edu	36	22	49241853	49241853	+	Silent	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	49241853	49241853	G	A	SNP	SBF1	NM_002972	human	genbank	54_36p	-1	validated	silent	c.3942	p.P1314	0.544	superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_GRAM,HMMSmart_SM00568,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
GOLGA7B	401647	genome.wustl.edu	36	10	99613685	99613685	+	Silent	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	99613685	99613685	G	A	SNP	GOLGA7B	NM_001010917	human	genbank	54_36p	+1	provisional	silent	c.147	p.R49	1.000	HMMPfam_Erf4	HMMPfam_Erf4	-	no_errors
ENSG00000212912	0	genome.wustl.edu	36	NT_113901	31150	31150	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113901	31150	31150	C	G	SNP	ENSG00000212912	ENST00000391599	human	ensembl	54_36p	-1	known	missense	c.122	p.R41P	NULL	NULL	NULL	-	no_errors
CDKL3	51265	genome.wustl.edu	36	5	133668148	133668148	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	133668148	133668148	C	T	SNP	CDKL3	ENST00000265334	human	ensembl	54_36p	-1	known	missense	c.1468	p.E490K	0.989	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SNCAIP	9627	genome.wustl.edu	36	5	121814707	121814707	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	121814707	121814707	G	A	SNP	SNCAIP	NM_005460	human	genbank	54_36p	+1	reviewed	missense	c.2266	p.E756K	1.000	NULL	superfamily_ANK,HMMPfam_Ank,HMMSmart_ANK	-	no_errors
GABRA4	2557	genome.wustl.edu	36	4	46667971	46667971	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	46667971	46667971	G	A	SNP	GABRA4	NM_000809	human	genbank	54_36p	-1	reviewed	missense	c.760	p.R254W	1.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
BRCA2	675	genome.wustl.edu	36	13	31804498	31804498	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	31804498	31804498	G	A	SNP	BRCA2	NM_000059	human	genbank	54_36p	+1	reviewed	missense	c.883	p.V295I	0.098	NULL	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	-	no_errors
ROBO3	64221	genome.wustl.edu	36	11	124254966	124254966	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	124254966	124254966	C	A	SNP	ROBO3	NM_022370	human	genbank	54_36p	+1	validated	missense	c.3870	p.S1290R	1.000	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
EIF6	3692	genome.wustl.edu	36	20	33331942	33331942	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	33331942	33331942	G	A	SNP	EIF6	NM_002212	human	genbank	54_36p	-1	reviewed	missense	c.298	p.R100W	1.000	superfamily_Pentein,HMMPfam_eIF-6,HMMSmart_SM00654	superfamily_Pentein,HMMPfam_eIF-6,HMMSmart_SM00654	-	no_errors
HMX1	3166	genome.wustl.edu	36	4	40564	40564	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	40564	40564	C	-	DEL	HMX1	NM_018942	human	genbank	54_36p	-1	validated	frame_shift_del	c.534	p.W178fs	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
FRMD8	83786	genome.wustl.edu	36	11	64924868	64924868	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64924868	64924868	G	A	SNP	FRMD8	NM_031904	human	genbank	54_36p	+1	validated	missense	c.1025	p.S342N	0.982	NULL	HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295	-	no_errors
B4GALNT3	283358	genome.wustl.edu	36	12	532735	532735	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	532735	532735	C	T	SNP	B4GALNT3	NM_173593	human	genbank	54_36p	+1	validated	missense	c.1385	p.T462I	0.003	NULL	HMMSmart_SM00758,HMMPfam_PA14,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GRM6	2916	genome.wustl.edu	36	5	178351517	178351517	+	Silent	SNP	G	G	T			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	178351517	178351517	G	T	SNP	GRM6	NM_000843	human	genbank	54_36p	-1	reviewed	silent	c.678	p.G226	0.963	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
KCNH5	27133	genome.wustl.edu	36	14	62244530	62244530	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2956-03A-01W-0733-08	TCGA-AB-2956-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	62244530	62244530	C	T	SNP	KCNH5	NM_139318	human	genbank	54_36p	-1	reviewed	missense	c.2416	p.G806R	1.000	NULL	superfamily_PYP-like sensor domain (PAS domain),HMMPfam_PAS,HMMSmart_SM00086,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,HMMSmart_SM00100,HMMPfam_cNMP_binding	-	no_errors
