Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
CD248	57124	genome.wustl.edu	36	11	65839509	65839509	+	Silent	SNP	C	C	T			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65839509	65839509	C	T	SNP	CD248	NM_020404	human	genbank	54_36p	-1	validated	silent	c.1566	p.P522	0.001	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_2,HMMSmart_SM00179,PatternScan_EGF_CA,HMMPfam_EGF_CA,PatternScan_ASX_HYDROXYL	-	no_errors
ZNF208	7757	genome.wustl.edu	36	19	21946266	21946266	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	21946266	21946266	C	G	SNP	ZNF208	NM_007153	human	genbank	54_36p	-1	provisional	missense	c.3028	p.E1010Q	0.635	NULL	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PABPC1P2	728773	genome.wustl.edu	36	2	147062355	147062355	+	Silent	SNP	C	C	T			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	147062355	147062355	C	T	SNP	PABPCP2	ENST00000359464	human	ensembl	54_36p	+1	known	silent	c.345	p.N115	0.997	superfamily_SSF54928,HMMSmart_RRM	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
uc001msu.1	0	genome.wustl.edu	36	11	31043202	31043202	+	Silent	SNP	G	G	A			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	31043202	31043202	G	A	SNP	uc001msu.1	ENST00000342355	human	ensembl	54_36p	-1	known	silent	c.1230	p.H410	0.454	superfamily_RicinB_like	superfamily_RicinB_like	-	no_errors
FNDC4	64838	genome.wustl.edu	36	2	27569140	27569140	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	27569140	27569140	C	T	SNP	FNDC4	NM_022823	human	genbank	54_36p	-1	validated	missense	c.566	p.R189H	1.000	NULL	superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27490642	27490642	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	27490642	27490642	C	A	SNP	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	missense	c.2503	p.D835Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
UBA6	55236	genome.wustl.edu	36	4	68182832	68182832	+	Splice_Site	SNP	C	C	T			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	68182832	68182832	C	T	SNP	UBA6	NM_018227	human	genbank	54_36p	-1	validated	splice_site	c.1843-1	e21-1	1.000	-	-	-	no_errors
FAM194A	131831	genome.wustl.edu	36	3	151867361	151867361	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	151867361	151867361	C	T	SNP	C3orf44	NM_152394	human	genbank	54_36p	-1	validated	missense	c.1631	p.R544H	0.548	NULL	NULL	-	no_errors
ENSG00000209442	0	genome.wustl.edu	36	22	35674526	35674526	+	RNA	SNP	C	C	T			TCGA-AB-2957-03A-01W-0733-08	TCGA-AB-2957-11A-01W-0732-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	35674526	35674526	C	T	SNP	ENSG00000209442	ENST00000386707	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	0.000	-	-	-	pseudogene
