Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
EFTUD1	79631	genome.wustl.edu	36	15	80317742	80317742	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	80317742	80317742	T	C	SNP	EFTUD1	NM_024580	human	genbank	54_36p	-1	validated	missense	c.692	p.N231S	0.997	HMMPfam_GTP_EFTU,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_EFG_C,HMMPfam_GTP_EFTU,HMMPfam_EFG_IV,superfamily_Translation proteins,superfamily_EF-G C-terminal domain-like,superfamily_Ribosomal protein S5 domain 2-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
VIPR1	7433	genome.wustl.edu	36	3	42530257	42530257	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	42530257	42530257	G	A	SNP	VIPR1	NM_004624	human	genbank	54_36p	+1	validated	missense	c.91	p.A31T	0.000	superfamily_Hormone receptor domain (HRM Pfam 02793)	HMMPfam_7tm_2,HMMPfam_HRM,HMMSmart_SM00008,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_Hormone receptor domain (HRM Pfam 02793),superfamily_Family A G protein-coupled receptor-like	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	C	C			C	C	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1	NULL	HMMPfam_PWWP;HMMPfam_DNA_methylase;superfamily_FYVE/PHD zinc finger;superfamily_S-adenosyl-L-methionine-dependent methyltransferases;superfamily_Tudor/PWWP/MBT	-	NA
TET2	54790	genome.wustl.edu	36	4	106400368	106400368	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	C	C			C	C	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	106400368	106400368	C	0	DEL	TET2	ENST00000265149	human	ensembl	54_36p	1	known	frame_shift_del	c.353	p.P118fs	NA	NA	NA	NA	NA
FLT3	2322	genome.wustl.edu	36	13	27506338	27506339	+	In_Frame_Ins	INS	-	-	TTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATCTGTAGCTGGCTTTT			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506338	27506339	0	TTCTCTGAAATCAACGTAGAAGTACTCATTATCTGAGGAGCCGGTCACCTGTACCATCTGTAGCTGGCTTTT	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1717_1717	ITD	1.000:1.000	NULL	HMMPfam_Pkinase_Tyr;superfamily_Protein kinase-like (PK-like);HMMPfam_ig;superfamily_Immunoglobulin	-	NA
HK1	3098	genome.wustl.edu	36	10	70828539	70828539	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	70828539	70828539	G	A	SNP	HK1	NM_033497	human	genbank	54_36p	+1	reviewed	missense	c.2570	p.R857H	0.888	HMMPfam_Hexokinase_2,superfamily_SSF53067	HMMPfam_Hexokinase_1,HMMPfam_Hexokinase_2,PatternScan_HEXOKINASES,superfamily_SSF53067	-	no_errors
ZNF689	115509	genome.wustl.edu	36	16	30524020	30524020	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	30524020	30524020	G	C	SNP	ZNF689	NM_138447	human	genbank	54_36p	-1	provisional	missense	c.569	p.S190C	0.705	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
LOC730032	730032	genome.wustl.edu	36	2	131391188	131391188	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	131391188	131391188	G	A	SNP	LOC730032	XM_001132160	human	genbank	54_36p	+1	model	missense	c.3199	p.A1067T	0.000	NULL	NULL	-	no_errors
FAM5C	339479	genome.wustl.edu	36	1	188334613	188334613	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	188334613	188334613	C	T	SNP	FAM5C	NM_199051	human	genbank	54_36p	-1	provisional	missense	c.1459	p.G487S	1.000	NULL	HMMPfam_MACPF,HMMSmart_SM00457	-	no_errors
RASSF7	8045	genome.wustl.edu	36	11	552159	552159	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2965-03A-01D-0739-09	TCGA-AB-2965-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	552159	552159	G	T	SNP	RASSF7	NM_003475	human	genbank	54_36p	+1	validated	missense	c.205	p.A69S	0.996	HMMPfam_RA,HMMSmart_SM00314	HMMPfam_RA,HMMSmart_SM00314	-	no_errors
