Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
SUSD5	26032	genome.wustl.edu	36	3	33169319	33169319	+	Silent	SNP	G	G	A			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	33169319	33169319	G	A	SNP	SUSD5	NM_015551	human	genbank	54_36p	-1	validated	silent	c.1809	p.H603	1.000	NULL	HMMSmart_CCP,HMMPfam_Xlink,HMMSmart_LINK,PatternScan_LINK_1,superfamily_Complement_control_module,superfamily_C-type_lectin_fold	-	no_errors
ENSG00000220279	0	genome.wustl.edu	36	8	105463270	105463289	+	Frame_Shift_Del	DEL	ACACACACACACACACACAT	ACACACACACACACACACAT	-			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	ACACACACACACACACACAT	ACACACACACACACACACAT			ACACACACACACACACACAT	ACACACACACACACACACAT	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	105463270	105463289	ACACACACACACACACACAT	-	DEL	ENSG00000220279	ENST00000404280	human	ensembl	54_36p	-1	known	frame_shift_del	c.155_136	p.M46fs	0.001:0.000:0.000:0.000:0.000:0.001:0.001:0.001:0.001:0.002:0.001:0.000:0.000:0.000:0.001:0.000:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
FGL2	10875	genome.wustl.edu	36	7	76663891	76663891	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	7	76663891	76663891	C	A	SNP	FGL2	NM_006682	human	genbank	54_36p	-1	reviewed	missense	c.961	p.V321L	1.000	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,PatternScan_FIBRIN_AG_C_DOMAIN,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
OVGP1	5016	genome.wustl.edu	36	1	111759025	111759048	+	In_Frame_Del	DEL	TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG	-			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG			TCACAGACTGATGACTCACAGGGG	TCACAGACTGATGACTCACAGGGG	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	111759025	111759048	TCACAGACTGATGACTCACAGGGG	-	DEL	OVGP1	NM_002557	human	genbank	54_36p	-1	reviewed	in_frame_del	c.1621_1598	p.TPVSHQSV533in_frame_del	0.115:0.128:0.134:0.121:0.100:0.104:0.104:0.104:0.104:0.105:0.099:0.087:0.066:0.056:0.038:0.029:0.001:0.002:0.076:0.129:0.139:0.142:0.139:0.125	NULL	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases,superfamily_Chitinase insertion domain	-	no_errors
ENSG00000215720	0	genome.wustl.edu	36	1	15391332	15391333	+	Splice_Site	INS	-	-	AGCGTAAGTACACGGGTGG			TCGA-AB-2982-03A-01D-0739-09	TCGA-AB-2982-11A-01D-0739-09	0	0			-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	15391332	15391333	-	AGCGTAAGTACACGGGTGG	INS	ENSG00000215720	ENST00000400795	human	ensembl	54_36p	-1	known	splice_site_ins	c.NULL	NULL	0.994:0.991	-	-	-	no_coding_region:pseudogene
