Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
DNMT3A	1788	genome.wustl.edu	36	2	25310746	25310746	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	25310746	25310746	C	T	SNP	DNMT3A	NM_022552	human	genbank	54_36p	-1	reviewed	missense	c.2645	p.R882H	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
KRAS	3845	genome.wustl.edu	36	12	25289548	25289548	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	25289548	25289548	C	T	SNP	KRAS	NM_033360	human	genbank	54_36p	-1	reviewed	missense	c.38	p.G13D	1.000	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PTPRE	5791	genome.wustl.edu	36	10	129744414	129744414	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	129744414	129744414	T	A	SNP	PTPRE	NM_006504	human	genbank	54_36p	+1	reviewed	missense	c.458	p.L153Q	0.997	HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	TCTG			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	TCTG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
SLC13A3	64849	genome.wustl.edu	36	20	44670958	44670958	+	Silent	SNP	C	C	T			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	44670958	44670958	C	T	SNP	SLC13A3	ENST00000339636	human	ensembl	54_36p	-1	known	silent	c.687	p.P229	0.000	NULL	HMMPfam_Na_sulph_symp	-	no_errors
PDGFRA	5156	genome.wustl.edu	36	4	54851324	54851324	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	54851324	54851324	G	C	SNP	PDGFRA	NM_006206	human	genbank	54_36p	+1	reviewed	missense	c.2968	p.G990R	0.999	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_III,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
ENC1	8507	genome.wustl.edu	36	5	73966654	73966654	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	73966654	73966654	C	G	SNP	ENC1	NM_003633	human	genbank	54_36p	-1	validated	missense	c.1413	p.R471S	1.000	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KRTAP10-8	386681	genome.wustl.edu	36	21	44856866	44856866	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2987-03A-01D-0739-09	TCGA-AB-2987-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	44856866	44856866	G	A	SNP	KRTAP10-8	NM_198695	human	genbank	54_36p	+1	provisional	missense	c.421	p.A141T	0.041	NULL	HMMPfam_Keratin_B2	-	no_errors
