Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
LOC339970	339970	genome.wustl.edu	36	4	68587383	68587383	+	RNA	SNP	G	G	A			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	68587383	68587383	G	A	SNP	LOC339970	XR_038239.1	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.001	-	-	-	pseudogene
SMC3	9126	genome.wustl.edu	36	10	112346166	112346166	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	112346166	112346166	G	T	SNP	SMC3	NM_005445.3	human	genbank	54_36p	+1	reviewed	missense	c.1984	p.G662C	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_Smc hinge domain	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_SMC_N,superfamily_BAG domain,superfamily_Smc hinge domain,HMMPfam_SMC_hinge,PatternScan_ABC_TRANSPORTER_1	-	no_errors
PTPRT	11122	genome.wustl.edu	36	20	40164254	40164254	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	20	40164254	40164254	G	A	SNP	PTPRT	NM_133170.5	human	genbank	54_36p	-1	reviewed	missense	c.3695	p.P1232L	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase	HMMSmart_SM00137,HMMPfam_MAM,PatternScan_MAM_1,superfamily_Immunoglobulin,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
SLC15A1	6564	genome.wustl.edu	36	13	98176393	98176393	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	98176393	98176393	C	T	SNP	SLC15A1	NM_005073.3	human	genbank	54_36p	-1	validated	nonsense	c.230	p.W77*	1.000	superfamily_MFS general substrate transporter,PatternScan_PTR2_1	superfamily_MFS general substrate transporter,PatternScan_PTR2_1,HMMPfam_PTR2,PatternScan_PTR2_2	-	no_errors
LOC728896	728896	genome.wustl.edu	36	17	43068885	43068885	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	43068885	43068885	G	T	SNP	LOC728896	XM_001719193.1	human	genbank	54_36p	-1	model	missense	c.138	p.F46L	0.078	NULL	NULL	-	no_errors
ETV6	2120	genome.wustl.edu	36	12	11883491	11883491	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	11883491	11883491	G	C	SNP	ETV6	NM_001987	human	genbank	54_36p	+1	reviewed	missense	c.314	p.R105P	0.995	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179184790	179184790	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	179184790	179184790	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.38437	p.E12813K	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like,superfamily_WD40 repeat-like,superfamily_Positive stranded ssRNA viruses,HMMPfam_Titin_Z,HMMSmart_SM00406,PatternScan_IG_MHC,HMMPfam_PPAK,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
CALHM3	119395	genome.wustl.edu	36	10	105228735	105228735	+	Silent	SNP	C	C	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	105228735	105228735	C	T	SNP	CALHM3	ENST00000369783	human	ensembl	54_36p	-1	known	silent	c.45	p.S15	0.104	NULL	NULL	-	no_errors
MYO18B	84700	genome.wustl.edu	36	22	24752889	24752889	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	24752889	24752889	G	A	SNP	MYO18B	NM_032608	human	genbank	54_36p	+1	reviewed	missense	c.6949	p.A2317T	0.000	NULL	HMMPfam_IQ,HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PDXDC1	23042	genome.wustl.edu	36	16	15030292	15030292	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	15030292	15030292	G	A	SNP	PDXDC1	NM_015027.2	human	genbank	54_36p	+1	validated	missense	c.1261	p.E421K	0.936	superfamily_PLP-dependent transferases	superfamily_PLP-dependent transferases,HMMPfam_Pyridoxal_deC	-	no_errors
GPR183	1880	genome.wustl.edu	36	13	98745388	98745388	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	98745388	98745388	G	A	SNP	GPR183	NM_004951.4	human	genbank	54_36p	-1	reviewed	missense	c.1013	p.A338V	1.000	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
CDH24	64403	genome.wustl.edu	36	14	22588266	22588266	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	14	22588266	22588266	G	T	SNP	CDH24	NM_022478.3	human	genbank	54_36p	-1	validated	nonsense	c.1770	p.Y590*	0.998	superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506273	27506274	+	In_Frame_Ins	INS	-	-	GAAATCAACGTAGAAGTACTCATTATCTGA			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506273	27506274	0	GAAATCAACGTAGAAGTACTCATTATCTGA	INS	FLT3	NM_004119.2	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1783_1782	p.594in_frame_insSDNEYFYVDF	1.000:1.000	superfamily_Kinase_like	superfamily_SSF48726,HMMPfam_ig,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
CDHR2	54825	genome.wustl.edu	36	5	175948939	175948939	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	175948939	175948939	C	T	SNP	PCDH24	NM_017675.3	human	genbank	54_36p	+1	reviewed	missense	c.3011	p.P1004L	0.982	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1	-	no_errors
DNMT3A	1788	genome.wustl.edu	36	2	25317018	25317018	+	Frame_Shift_Del	DEL	A	A	-			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	25317018	25317018	A	0	DEL	DNMT3A	NM_022552.3	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.2168	p.L723fs	0.999	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1	-	no_errors
RPLP0P2	113157	genome.wustl.edu	36	11	61152920	61152920	+	RNA	SNP	C	C	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	11	61152920	61152920	C	T	SNP	RPLP0P2	NR_002775.2	human	genbank	54_36p	+1	inferred	rna	NULL	NULL	0.000	-	-	-	pseudogene
NPM1	4869	genome.wustl.edu	36	5	170770152	170770153	+	Frame_Shift_Ins	INS	-	-	CATG			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09	-	-			-	-	Verified	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	170770152	170770153	0	CATG	INS	NPM1	NM_002520	human	genbank	54_36p	1	validated	frame_shift_ins	c.863_864	p.W288fs	1.000:1.000	NULL	Nucleoplasmin;HMMPfam_Nucleoplasmin;Nucleoplasmin-like	-	NA
GPR123	84435	genome.wustl.edu	36	10	134734535	134734535	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	10	134734535	134734535	C	T	SNP	GPR123	ENST00000368577	human	ensembl	54_36p	+1	known	missense	c.113	p.T38I	0.000	NULL	HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
DSCAM	1826	genome.wustl.edu	36	21	40336315	40336315	+	Silent	SNP	A	A	G			TCGA-AB-2993-03A-01D-0739-09	TCGA-AB-2993-11A-01D-0739-09					A	A	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	21	40336315	40336315	A	G	SNP	DSCAM	NM_001389.3	human	genbank	54_36p	-1	validated	silent	c.5539	p.L1847	1.000	NULL	superfamily_Immunoglobulin,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMSmart_SM00406,HMMPfam_ig,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
