Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
BTBD8	284697	genome.wustl.edu	36	1	92385369	92385369	+	Silent	SNP	T	T	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	1	92385369	92385369	T	A	SNP	BTBD8	NM_183242	human	genbank	54_36p	+1	validated	silent	c.975	p.I325	1.000	NULL	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	-	no_errors
HYDIN	54768	genome.wustl.edu	36	16	69535291	69535291	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	69535291	69535291	G	A	SNP	HYDIN	NM_032821	human	genbank	54_36p	-1	validated	silent	c.6591	p.V2197	0.016	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000214094	0	genome.wustl.edu	36	17	77004882	77004882	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	17	77004882	77004882	G	A	SNP	ENSG00000214094	ENST00000397526	human	ensembl	54_36p	-1	known	missense	c.173	p.P58L	0.390	NULL	NULL	-	no_stop_codon
LOC100128371	100128371	genome.wustl.edu	36	16	31414446	31414446	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	31414446	31414446	T	C	SNP	LOC100128371	XM_001725757	human	genbank	54_36p	-1	model	missense	c.250	p.T84A	0.004	NULL	NULL	-	no_errors
ZC3H8	84524	genome.wustl.edu	36	2	112710625	112710625	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	2	112710625	112710625	G	A	SNP	ZC3H8	NM_032494	human	genbank	54_36p	-1	validated	silent	c.489	p.S163	0.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
ZNF34	80778	genome.wustl.edu	36	8	145974246	145974246	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	145974246	145974246	G	A	SNP	ZNF34	NM_030580	human	genbank	54_36p	-1	validated	silent	c.204	p.Y68	0.090	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ARHGAP39	80728	genome.wustl.edu	36	8	145743702	145743702	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	8	145743702	145743702	G	C	SNP	KIAA1688	NM_025251	human	genbank	54_36p	-1	validated	missense	c.1576	p.Q526E	0.411	NULL	HMMSmart_SM00456,HMMPfam_WW,superfamily_WW domain,HMMSmart_SM00139,HMMPfam_MyTH4,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	-	no_errors
PNPLA7	375775	genome.wustl.edu	36	9	139478661	139478661	+	Silent	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	9	139478661	139478661	G	A	SNP	PNPLA7	NM_001098537	human	genbank	54_36p	-1	validated	silent	c.3108	p.A1036	0.336	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like,superfamily_cAMP-binding domain-like	-	no_errors
MLIP	90523	genome.wustl.edu	36	6	54097557	54097557	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	6	54097557	54097557	G	A	SNP	C6orf142	NM_138569	human	genbank	54_36p	+1	validated	missense	c.547	p.D183N	0.239	NULL	NULL	-	no_errors
ODZ2	57451	genome.wustl.edu	36	5	167621693	167621693	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	5	167621693	167621693	G	T	SNP	ODZ2	ENST00000388903	human	ensembl	54_36p	+1	known	missense	c.7622	p.G2541V	1.000	NULL	HMMPfam_Ten_N,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Carboxypeptidase regulatory domain,superfamily_NHL repeat,HMMPfam_NHL,HMMPfam_RHS_repeat	-	no_errors
NUBP2	10101	genome.wustl.edu	36	16	1776558	1776558	+	Silent	SNP	C	C	T			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	1776558	1776558	C	T	SNP	NUBP2	NM_012225	human	genbank	54_36p	+1	validated	silent	c.36	p.G12	0.837	superfamily_SSF52540	superfamily_SSF52540,PatternScan_MRP,HMMPfam_ParA	-	no_errors
SCARB1	949	genome.wustl.edu	36	12	123868089	123868089	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	123868089	123868089	C	T	SNP	SCARB1	NM_005505	human	genbank	54_36p	-1	validated	missense	c.244	p.E82K	0.995	HMMPfam_CD36	HMMPfam_CD36	-	no_errors
SOX5	6660	genome.wustl.edu	36	12	23580673	23580673	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	23580673	23580673	G	A	SNP	SOX5	NM_006940	human	genbank	54_36p	-1	reviewed	missense	c.1969	p.R657W	1.000	NULL	PatternScan_TONB_DEPENDENT_REC_1,superfamily_HMG-box,HMMSmart_SM00398,HMMPfam_HMG_box	-	no_errors
FLT3	2322	genome.wustl.edu	36	13	27506255	27506256	+	In_Frame_Ins	INS	-	-	ATCATATTCATATTCTCTGAA			TCGA-AB-2994-03A-01D-0739-09	TCGA-AB-2994-11A-01D-0739-09	0	0			-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	13	27506255	27506256	-	ATCATATTCATATTCTCTGAA	INS	FLT3	NM_004119	human	genbank	54_36p	-1	reviewed	in_frame_ins	c.1801_1800	p.600in_frame_insFREYEYD	1.000:0.998	superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_III,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
