Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
GANC	2595	genome.wustl.edu	36	15	40428888	40428888	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	15	40428888	40428888	G	A	SNP	GANC	NM_198141	human	genbank	54_36p	+1	reviewed	missense	c.2434	p.E812K	1.000	NULL	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,superfamily_(Trans)glycosidases	-	no_errors
EWSR1	2130	genome.wustl.edu	36	22	28018596	28018596	+	Splice_Site	SNP	G	G	T			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	28018596	28018596	G	T	SNP	EWSR1	NM_005243	human	genbank	54_36p	+1	reviewed	splice_site	c.1164+1	e11+1	1.000	-	-	-	no_errors
DHX34	9704	genome.wustl.edu	36	19	52567974	52567974	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	G	G			G	G	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	19	52567974	52567974	G	A	SNP	DHX34	NM_014681	human	genbank	54_36p	+1	reviewed	missense	c.1942	p.V648I	0.984	NULL	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_SM00487,PatternScan_RUBREDOXIN,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ETV6	2120	genome.wustl.edu	36	12	11883488	11883500	+	Frame_Shift_Del	DEL	ATCGATCTCCTCA	ATCGATCTCCTCA	-			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	ATCGATCTCCTCA	ATCGATCTCCTCA			ATCGATCTCCTCA	ATCGATCTCCTCA	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	12	11883488	11883500	ATCGATCTCCTCA	-	DEL	ETV6	NM_001987	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.311_323	p.Y104fs	0.995:0.881:0.929:0.995:0.992:1.000:1.000:1.000:1.000:1.000:0.984:1.000:1.000	superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_2"	-	no_errors
CADM2	253559	genome.wustl.edu	36	3	86197499	86197499	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	3	86197499	86197499	T	G	SNP	CADM2	NM_153184	human	genbank	54_36p	+1	validated	missense	c.1124	p.I375R	1.000	NULL	HMMSmart_4.1m,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_SSF48726	-	no_errors
FRYL	285527	genome.wustl.edu	36	4	48271967	48271967	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	T	T			T	T	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	4	48271967	48271967	T	C	SNP	FRYL	NM_015030	human	genbank	54_36p	-1	validated	missense	c.2770	p.M924V	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
SRRM2	23524	genome.wustl.edu	36	16	2752700	2752701	+	Frame_Shift_Ins	INS	-	-	TC			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	0	0			-	-	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	16	2752700	2752701	-	TC	INS	SRRM2	NM_016333	human	genbank	54_36p	+1	validated	frame_shift_ins	c.2170_2171	p.S724fs	1.000:1.000	NULL	HMMPfam_cwf21	-	no_errors
CYLC1	1538	genome.wustl.edu	36	X	83015361	83015361	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	X	83015361	83015361	C	A	SNP	CYLC1	NM_021118	human	genbank	54_36p	+1	provisional	missense	c.989	p.T330K	0.027	NULL	NULL	-	no_errors
TOP3B	8940	genome.wustl.edu	36	22	20654724	20654724	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-3012-03A-01D-0739-09	TCGA-AB-3012-11A-01D-0739-09	C	C			C	C	Unknown	Valid	Somatic		WGS	Illumina_Capture			Illumina GAIIx	22	20654724	20654724	C	T	SNP	TOP3B	NM_003935	human	genbank	54_36p	-1	reviewed	missense	c.439	p.V147M	0.984	superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMPfam_Toprim	PatternScan_TOPOISOMERASE_I_PROK,superfamily_Prokaryotic type I DNA topoisomerase,HMMSmart_SM00436,HMMSmart_SM00437,HMMSmart_SM00493,HMMPfam_Toprim,HMMPfam_Topoisom_bac	-	no_errors
