writing sdrf to LGG.merger.sdrf.txt

------------------------------------------------------------------
2012-12-21 19:32:41.738474
. ['/xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/LGG/2170076/infile1.input.tsv']

Make a softlink......

Flag: True.
Processing input file to make a softlink...: /xchip/cga/gdac-prod/tcga-gdac/jobResults/MutationPackagerCoverage/LGG/2170076/infile1.input.tsv

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-F2-7273-01.wig.txt
('', None)
0
5ae194458fe7d0d2f7d7da8d4f0e4a23
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-F2-7276-01.wig.txt
('', None)
0
ed1fc0d387d6160d03ff789e851a4bb0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6551-01.wig.txt
('', None)
0
b854bbc06f8a074765dda181c4eff1c8
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6552-01.wig.txt
('', None)
0
ed3f44e82954174b7550dc5607630811
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6553-01.wig.txt
('', None)
0
76374963729c0270668712990b7457c0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6554-01.wig.txt
('', None)
0
45731fa4f39a80573ec20bb4b9402db3
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6555-01.wig.txt
('', None)
0
17ccb9b38c8e8aa753ff2e4b00f0229d
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6558-01.wig.txt
('', None)
0
99b41bc37e8529d8149cd0d38dc9f67f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FQ-6559-01.wig.txt
('', None)
0
64a7b9e1592fb4d4d372f6bbb58e4913
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5919-01.wig.txt
('', None)
0
ba3e6b82cbcc6f4a0cd9a19ff5ad8ed9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5920-01.wig.txt
('', None)
0
6ee0df91a0dc19cacedbcee2b4a12387
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5921-01.wig.txt
('', None)
0
9bbf660084679149975d23da0ede6b2a
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5922-01.wig.txt
('', None)
0
783d86e02c06d01af61e83d9582ec20b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5923-01.wig.txt
('', None)
0
7cbb677b83806e41f74197f525819c6f
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5924-01.wig.txt
('', None)
0
11cee9c2cb54ea35a276eb7ce3d335b5
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-FZ-5926-01.wig.txt
('', None)
0
25df279baf18c5ad4138f20fd66c7241
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-7918-01.wig.txt
('', None)
0
a50db4a7004c757ec46a10bce89294e0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-7920-01.wig.txt
('', None)
0
3d9788ebee03e359feccf50020d50775
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-7924-01.wig.txt
('', None)
0
e9def09b63d21ea8d3b373c4d1f00185
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-7925-01.wig.txt
('', None)
0
1ee3eb2b3426235f877d92051cc19113
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-7926-01.wig.txt
('', None)
0
0d54c620f326f7fe800219ba76eede2b
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-8001-01.wig.txt
('', None)
0
dbaf943ee77e66db68855442215531c0
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-8002-01.wig.txt
('', None)
0
56f90816e102f648fcbd7a00eeea1ac9
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-8003-01.wig.txt
('', None)
0
41577479ac7009349f224acecc60bbfa
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-HZ-8005-01.wig.txt
('', None)
0
faba64fa0ca06ec88b91a18f787fdb81
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7645-01.wig.txt
('', None)
0
0fb15769a38b09284305cc78ff4f7fcb
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7649-01.wig.txt
('', None)
0
ab92e3d70467384b9dee0e5967d5e813
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7886-01.wig.txt
('', None)
0
9b540964e8ebda337f4529eb21e00209
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7887-01.wig.txt
('', None)
0
9b78e3eccb7f21dfec7a7cdca76ea0fc
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7889-01.wig.txt
('', None)
0
f3f11b9635e618cba03afc80ea5e03db
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7890-01.wig.txt
('', None)
0
9512e944812ee07e9a72c50f65863935
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7891-01.wig.txt
('', None)
0
ca29ab08633567d212a2f6617c025947
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7893-01.wig.txt
('', None)
0
bea52706d0b0db77a724487db75e4d7c
It is not in the dictionary

md5sum /xchip/gdac_data/normalized/diced/lgg/tracerel__illuminaga_dnaseq__broad_mit_edu__Level_2__Coverage_Calculation__wig/broad.mit.edu_LGG.IlluminaGA_DNASeq.Level_2.2.1.0/TCGA-IB-7897-01.wig.txt
('', None)
0
b83ea8bf332cecbe16e37eab3f629a2f
It is not in the dictionary
Make a softlink is done.


