Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A1CF	29974	broad.mit.edu	37	10	52595888	52595888	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7759205	7759205	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACSL	729522	broad.mit.edu	37	5	178220276	178220276	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125587637	125587637	+	Intron	SNP	C	A	A	rs143607506	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215798856	215798856	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94506750	94506750	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66982325	66982325	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB10	23456	broad.mit.edu	37	1	229666038	229666038	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169792745	169792745	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG5	64240	broad.mit.edu	37	2	44051104	44051104	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD4	63874	broad.mit.edu	37	14	23072869	23072869	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD8	79575	broad.mit.edu	37	19	17405099	17405099	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35766256	35766256	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACBD4	79777	broad.mit.edu	37	17	43214280	43214280	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61558409	61558409	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23531553	23531553	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131302125	131302125	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20486735	20486735	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20551969	20551969	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127782765	127782765	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM32	203102	broad.mit.edu	37	8	39009054	39009054	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107136688	107136688	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS13	11093	broad.mit.edu	37	9	136303016	136303016	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS3	9508	broad.mit.edu	37	4	73149142	73149142	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78399674	78399674	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45719583	45719583	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49177055	49177055	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50345611	50345611	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY7	113	broad.mit.edu	37	16	50349373	50349373	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131922134	131922134	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131955633	131955633	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD1	118	broad.mit.edu	37	4	2886361	2886361	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86813215	86813215	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	49052780	49052780	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGFG2	3268	broad.mit.edu	37	7	100153247	100153247	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTPBP1	23287	broad.mit.edu	37	9	88292350	88292350	+	Splice_Site	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCY	191	broad.mit.edu	37	20	32878341	32878341	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHDC1	27245	broad.mit.edu	37	1	27878283	27878283	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSP	51327	broad.mit.edu	37	16	31539817	31539817	+	Silent	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT3	10000	broad.mit.edu	37	1	243800930	243800930	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165649772	165649772	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29754669	29754669	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677380	73677380	+	Silent	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677777	73677777	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR12	130540	broad.mit.edu	37	2	202172361	202172361	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX4	60529	broad.mit.edu	37	11	44296944	44296944	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMH	268	broad.mit.edu	37	19	2251775	2251775	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41530018	41530018	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61946574	61946574	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241494221	241494221	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89356943	89356943	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14791502	14791502	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD56	345079	broad.mit.edu	37	4	77818208	77818208	+	Silent	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242149096	242149097	+	Intron	DNP	CC	AA	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36655990	36655990	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201466909	201466909	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APCS	325	broad.mit.edu	37	1	159558144	159558144	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLF	200558	broad.mit.edu	37	2	68765342	68765343	+	Nonsense_Mutation	DNP	TG	AT	AT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3H	164668	broad.mit.edu	37	22	39496270	39496270	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21226018	21226018	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110454436	110454436	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP24	83478	broad.mit.edu	37	4	86915594	86915594	+	Intron	SNP	T	A	A	rs75349882	byFrequency;by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130217268	130217268	+	Intron	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11162106	11162106	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC1	55156	broad.mit.edu	37	8	66539450	66539450	+	Splice_Site	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMC3	219681	broad.mit.edu	37	10	23257454	23257454	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPP21	10777	broad.mit.edu	37	3	35833787	35833787	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP3	55616	broad.mit.edu	37	1	23762407	23762407	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155327141	155327141	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPHD2	57168	broad.mit.edu	37	22	26839084	26839084	+	Missense_Mutation	SNP	G	T	T	rs138986249		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197073015	197073015	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	25967292	25967292	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31326637	31326637	+	3'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1396323	1396323	+	Intron	SNP	C	A	A	rs113733923	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108218090	108218090	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160141497	160141497	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A4	480	broad.mit.edu	37	1	160156112	160156112	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28913886	28913886	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10387773	10387773	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152821552	152821552	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36046612	36046612	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5EP2	432369	broad.mit.edu	37	13	28519480	28519480	+	RNA	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GNT6	192134	broad.mit.edu	37	11	76750717	76750717	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT5	9334	broad.mit.edu	37	20	48253874	48253874	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79411612	79411612	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69772946	69772946	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAK1	578	broad.mit.edu	37	6	33543486	33543486	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33545232	33545232	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18195712	18195712	+	Missense_Mutation	SNP	G	T	T	rs139599869		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLZF1	8548	broad.mit.edu	37	1	169346053	169346053	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112969439	112969439	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140534556	140534556	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTAF1	9044	broad.mit.edu	37	10	93786944	93786944	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD7	55727	broad.mit.edu	37	14	93723587	93723587	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26465284	26465284	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf2	56652	broad.mit.edu	37	10	102748795	102748795	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112677840	112677840	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60600867	60600867	+	Silent	SNP	G	T	T	rs138489606		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf174	161394	broad.mit.edu	37	14	77844532	77844532	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf43	91748	broad.mit.edu	37	14	74189321	74189321	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf4	64207	broad.mit.edu	37	14	77493595	77493595	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921606	24921606	+	Missense_Mutation	SNP	G	T	T	rs150016698		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf59	388135	broad.mit.edu	37	15	74032550	74032550	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf53	78995	broad.mit.edu	37	17	42225773	42225773	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30977231	30977231	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf51	352909	broad.mit.edu	37	19	55672123	55672123	+	Silent	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf182	128229	broad.mit.edu	37	1	156314480	156314480	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf187	374946	broad.mit.edu	37	1	11769501	11769501	+	Silent	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf198	84886	broad.mit.edu	37	1	231004224	231004224	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf166	128826	broad.mit.edu	37	20	61150822	61150822	+	5'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf85	285093	broad.mit.edu	37	2	242815319	242815319	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf86	51057	broad.mit.edu	37	2	63380691	63380691	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf25	375484	broad.mit.edu	37	5	175740689	175740689	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37183193	37183193	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121544338	121544338	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28A	51622	broad.mit.edu	37	7	5952629	5952629	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABC1	56997	broad.mit.edu	37	1	227152774	227152774	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24487629	24487629	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1G	8913	broad.mit.edu	37	17	48680482	48680482	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40054166	40054166	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40066959	40066959	+	Silent	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54603989	54603989	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24373177	24373177	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54110043	54110043	+	Splice_Site	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188247840	188247840	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110489966	110489966	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35904806	35904806	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2959089	2959089	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARKD	55739	broad.mit.edu	37	13	111274673	111274673	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER1	117144	broad.mit.edu	37	11	65793597	65793597	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBFB	865	broad.mit.edu	37	16	67116323	67116323	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBL2	56267	broad.mit.edu	37	1	89434336	89434336	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66504227	66504227	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC122	160857	broad.mit.edu	37	13	44443475	44443475	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC12	151903	broad.mit.edu	37	3	46982366	46982366	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC71	64925	broad.mit.edu	37	3	49200414	49200414	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL19	6363	broad.mit.edu	37	9	34689810	34689810	+	3'UTR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50094386	50094386	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1A	909	broad.mit.edu	37	1	158226720	158226720	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158324199	158324199	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158324240	158324240	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158324502	158324502	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD34	947	broad.mit.edu	37	1	208061527	208061527	+	Intron	SNP	C	A	A	rs138648763	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80091794	80091794	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD37	951	broad.mit.edu	37	19	49842683	49842683	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD79B	974	broad.mit.edu	37	17	62006601	62006601	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD82	3732	broad.mit.edu	37	11	44640139	44640139	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149938744	149938744	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99	4267	broad.mit.edu	37	X	2638464	2638464	+	Silent	SNP	C	A	A	rs143391916	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44815504	44815504	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25616324	25616324	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5	1020	broad.mit.edu	37	7	150754239	150754239	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR2L	30850	broad.mit.edu	37	17	72999924	72999924	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDX4	1046	broad.mit.edu	37	X	72667475	72667475	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17662792	17662792	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP110	11064	broad.mit.edu	37	9	123907706	123907706	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP170	9859	broad.mit.edu	37	1	243354602	243354602	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13100550	13100550	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETP	1071	broad.mit.edu	37	16	57015516	57015516	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFP	5199	broad.mit.edu	37	X	47486281	47486281	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50835611	50835611	+	Intron	SNP	G	T	T	rs56722599	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50870909	50870909	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40079785	40079785	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN2	1124	broad.mit.edu	37	7	29252146	29252146	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CILP	8483	broad.mit.edu	37	15	65499179	65499179	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA4	22802	broad.mit.edu	37	1	87045796	87045796	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143043264	143043264	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC5A	23601	broad.mit.edu	37	7	141643750	141643750	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154508497	154508497	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154519754	154519754	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC2	1193	broad.mit.edu	37	X	154520024	154520024	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23625371	23625371	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPS	1208	broad.mit.edu	37	6	35762936	35762936	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36216741	36216741	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNNM2	54805	broad.mit.edu	37	10	104816716	104816716	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146741026	146741026	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125555740	125555740	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75898156	75898156	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121262899	121262899	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139675799	139675799	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139691879	139691879	+	Missense_Mutation	SNP	A	T	T	rs144461812	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109971367	109971367	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228118303	228118303	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107827779	107827779	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107457416	107457416	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137657571	137657571	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47407630	47407630	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48603991	48603991	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70991127	70991127	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS3	8533	broad.mit.edu	37	17	17179439	17179439	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148596572	148596572	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211473214	211473214	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211515108	211515108	+	Silent	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207737306	207737306	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17272844	17272844	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61987647	61987647	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3087424	3087425	+	Intron	DNP	GG	TT	TT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34082549	34082549	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113358313	113358313	+	Intron	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113518953	113518953	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G1	53944	broad.mit.edu	37	15	64506177	64506177	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAG2	30848	broad.mit.edu	37	X	153880487	153880487	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTBP2	1488	broad.mit.edu	37	10	126716294	126716294	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSP1	58190	broad.mit.edu	37	2	219266977	219266977	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	68535098	68535098	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSG	1511	broad.mit.edu	37	14	25044579	25044579	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16970382	16970382	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4B	8450	broad.mit.edu	37	X	119669669	119669669	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL4B	8450	broad.mit.edu	37	X	119677559	119677559	+	Intron	SNP	T	G	G	rs35746806		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43164320	43164320	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL16	58191	broad.mit.edu	37	17	4642104	4642104	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf40A	91966	broad.mit.edu	37	X	148627153	148627153	+	5'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143956767	143956767	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41383145	41383145	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A22	284541	broad.mit.edu	37	1	47609613	47609613	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125686593	125686593	+	5'UTR	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCC	1630	broad.mit.edu	37	18	50741882	50741882	+	Intron	DEL	G	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6662431	6662431	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCI	1632	broad.mit.edu	37	16	2296886	2296886	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX23	9416	broad.mit.edu	37	12	49230630	49230630	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126214567	126214567	+	Silent	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32205512	32205512	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX57	90957	broad.mit.edu	37	2	39088243	39088243	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2C	22982	broad.mit.edu	37	10	395457	395457	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIXDC1	85458	broad.mit.edu	37	11	111863664	111863664	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84256267	84256267	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35125308	35125308	+	Silent	SNP	C	A	A	rs34044530		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX4	1748	broad.mit.edu	37	17	48046906	48046906	+	Missense_Mutation	SNP	C	A	A	rs145781048	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72297334	72297334	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72310295	72310295	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC11	55735	broad.mit.edu	37	1	6712898	6712898	+	Silent	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC14	85406	broad.mit.edu	37	12	56222249	56222249	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5G	285126	broad.mit.edu	37	2	27502942	27502942	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTTIP2	30836	broad.mit.edu	37	1	94335424	94335424	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225635236	225635236	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169504856	169504856	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	50756876	50756876	+	Intron	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51393803	51393803	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51393980	51393980	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK1	1796	broad.mit.edu	37	2	74783970	74783970	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116226498	116226498	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116525943	116525943	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP3	10072	broad.mit.edu	37	11	66258798	66258798	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7584149	7584149	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7585433	7585433	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTYMK	1841	broad.mit.edu	37	2	242617967	242617967	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167064042	167064042	+	5'Flank	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP7	1849	broad.mit.edu	37	3	52088145	52088145	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I1	1780	broad.mit.edu	37	7	95499231	95499231	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71801487	71801487	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207516601	207516601	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207528023	207528023	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108405608	108405608	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F1	1869	broad.mit.edu	37	20	32266200	32266200	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFL6	25975	broad.mit.edu	37	X	13641829	13641829	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34419965	34419965	+	5'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31489306	31489306	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL3	1995	broad.mit.edu	37	19	11565875	11565875	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80626442	80626442	+	Silent	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14854365	14854365	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAH	55740	broad.mit.edu	37	1	225692753	225692753	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129762018	129762018	+	Splice_Site	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131190925	131190925	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41	2035	broad.mit.edu	37	1	29342337	29342337	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143098538	143098538	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66356169	66356169	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB4	2050	broad.mit.edu	37	7	100403124	100403124	+	Missense_Mutation	SNP	C	A	A	rs140332222	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142563762	142563762	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220193310	220193310	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN2	10595	broad.mit.edu	37	16	23713904	23713904	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC6	54536	broad.mit.edu	37	10	94669290	94669290	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH2	2146	broad.mit.edu	37	7	148511213	148511213	+	Silent	SNP	C	A	A	rs144723981		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F9	2158	broad.mit.edu	37	X	138612946	138612946	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP3	2170	broad.mit.edu	37	1	31840268	31840268	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM111A	63901	broad.mit.edu	37	11	58919180	58919180	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM127C	441518	broad.mit.edu	37	X	134156366	134156366	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139163840	139163840	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139255226	139255226	+	Silent	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153A	285596	broad.mit.edu	37	5	177163640	177163640	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160B2	64760	broad.mit.edu	37	8	21955520	21955520	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15254951	15254951	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM53C	51307	broad.mit.edu	37	5	137677034	137677034	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67576722	67576722	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	11990030	11990030	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98C	147965	broad.mit.edu	37	19	38899502	38899504	+	In_Frame_Del	DEL	AAG	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45605042	45605042	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163045608	163045608	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150922135	150922135	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48936742	48936742	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147795533	147795533	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161476118	161476118	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN1	2219	broad.mit.edu	37	9	137808249	137808249	+	Silent	SNP	C	A	A	rs140918622	byFrequency;by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108282003	108282003	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FFAR3	2865	broad.mit.edu	37	19	35850660	35850660	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF5	2250	broad.mit.edu	37	4	81188269	81188269	+	Silent	SNP	C	A	A	rs148557449		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR3	2261	broad.mit.edu	37	4	1803633	1803633	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155530765	155530766	+	Intron	DNP	GG	TT	TT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67264664	67264664	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBPL	63943	broad.mit.edu	37	6	32096599	32096599	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKTN	2218	broad.mit.edu	37	9	108370277	108370277	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180052946	180052946	+	Nonsense_Mutation	SNP	G	C	C	rs3736062	byFrequency;by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240492590	240492590	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240555866	240555866	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL2	114793	broad.mit.edu	37	2	153471554	153471554	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147026478	147026478	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49204890	49204890	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOSB	2354	broad.mit.edu	37	19	45971807	45971807	+	5'UTR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXJ2	55810	broad.mit.edu	37	12	8192708	8192708	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXL2	668	broad.mit.edu	37	3	138664375	138664375	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131264742	131264742	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37711392	37711392	+	Silent	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49447647	49447647	+	Splice_Site	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12692874	12692874	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4307868	4307868	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUNDC2P2	388965	broad.mit.edu	37	2	84517868	84517868	+	5'UTR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD6	53826	broad.mit.edu	37	11	117712685	117712685	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161292724	161292724	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRE	2564	broad.mit.edu	37	X	151128011	151128011	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG1	2565	broad.mit.edu	37	4	46099357	46099357	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRP	2568	broad.mit.edu	37	5	170236815	170236815	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	155265538	155265538	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16261607	16261607	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAN	8139	broad.mit.edu	37	16	81388198	81388198	+	Silent	SNP	G	T	T	rs143704621		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2	2620	broad.mit.edu	37	11	22748017	22748017	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAST	2520	broad.mit.edu	37	17	39871829	39871829	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44184946	44184946	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1	54332	broad.mit.edu	37	8	75263508	75263508	+	Splice_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF10	2662	broad.mit.edu	37	10	48429290	48429290	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDI1	2664	broad.mit.edu	37	X	153670435	153670435	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55196632	55196632	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172165766	172165766	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604135	90604135	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6587241	6587241	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121531572	121531573	+	Intron	INS	-	C	C	rs143797363	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42088216	42088216	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMCL1L	64396	broad.mit.edu	37	5	177613745	177613745	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB2	26205	broad.mit.edu	37	20	62250612	62250612	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167728606	167728606	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC4	2239	broad.mit.edu	37	X	132436969	132436969	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136112793	136112793	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100384085	100384085	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR64	10149	broad.mit.edu	37	X	19028604	19028604	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC6A	222545	broad.mit.edu	37	6	117149993	117149993	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPT	2875	broad.mit.edu	37	8	145731317	145731317	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL1	29841	broad.mit.edu	37	2	10099055	10099055	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87407104	87407104	+	Missense_Mutation	SNP	C	A	A	rs76097378	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN1	2902	broad.mit.edu	37	9	140051323	140051323	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9934526	9934526	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121184541	121184541	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK5	2869	broad.mit.edu	37	10	121199253	121199253	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK6	2870	broad.mit.edu	37	5	176868863	176868863	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27840058	27840058	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA2	2939	broad.mit.edu	37	6	52630236	52630236	+	5'Flank	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTO2	119391	broad.mit.edu	37	10	106039228	106039228	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127451442	127451442	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122627237	122627237	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19063701	19063701	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS7	55559	broad.mit.edu	37	X	152721766	152721766	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAX1	10456	broad.mit.edu	37	1	154246148	154246149	+	Intron	INS	-	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBB	3043	broad.mit.edu	37	11	5248282	5248282	+	Translation_Start_Site	SNP	G	T	T	rs63750628		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCFC1	3054	broad.mit.edu	37	X	153230100	153230100	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121376979	121376979	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP2	84717	broad.mit.edu	37	19	4475497	4475497	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236719226	236719226	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31763019	31763022	+	Intron	DEL	TGAT	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41009403	41009403	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41019088	41019088	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31626111	31626111	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45470021	45470021	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69692462	69692462	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHATL	57467	broad.mit.edu	37	3	42738964	42738964	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRIP3	8479	broad.mit.edu	37	16	30005857	30005857	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43029926	43029926	+	5'UTR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB2	3212	broad.mit.edu	37	17	46620496	46620496	+	Silent	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152187553	152187553	+	Missense_Mutation	SNP	G	T	T	rs138998590	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152192644	152192644	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26147079	26147079	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST6	64711	broad.mit.edu	37	16	1962127	1962127	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22191744	22191744	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNB1	3456	broad.mit.edu	37	9	21077501	21077501	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP3	3486	broad.mit.edu	37	7	45956257	45956257	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF6	10261	broad.mit.edu	37	16	21655614	21655614	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133801993	133801993	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKZF3	22806	broad.mit.edu	37	17	37947691	37947691	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL15	3600	broad.mit.edu	37	4	142653921	142653921	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL20RA	53832	broad.mit.edu	37	6	137323275	137323275	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39735139	39735139	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL32	9235	broad.mit.edu	37	16	3117636	3117636	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILKAP	80895	broad.mit.edu	37	2	239079704	239079704	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMMP2L	83943	broad.mit.edu	37	7	111127446	111127446	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPACT	55364	broad.mit.edu	37	18	22020612	22020612	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61913164	61913164	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105181590	105181590	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INMT	11185	broad.mit.edu	37	7	30793359	30793359	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143114199	143114199	+	Intron	DEL	G	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS3	65123	broad.mit.edu	37	1	153724780	153724780	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30823942	30823942	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15561251	15561251	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187529244	187529244	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73747115	73747122	+	Frame_Shift_Del	DEL	GCTGGGCT	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73750604	73750604	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54817333	54817333	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26639154	26639154	+	Silent	SNP	C	A	A	rs111760835		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6058530	6058530	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUNB	3726	broad.mit.edu	37	19	12902575	12902575	+	5'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021670	5021670	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63448029	63448029	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155711609	155711609	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88654290	88654290	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196197285	196197285	+	3'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196448282	196448282	+	Intron	DEL	G	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCP	375616	broad.mit.edu	37	7	128553071	128553071	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD3	51133	broad.mit.edu	37	1	215747143	215747143	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5C	8242	broad.mit.edu	37	X	53245284	53245284	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0100	9703	broad.mit.edu	37	17	26965135	26965135	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0406	9675	broad.mit.edu	37	20	36634758	36634758	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0652	9776	broad.mit.edu	37	11	46690497	46690497	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0753	9851	broad.mit.edu	37	17	6526310	6526310	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154394251	154394251	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39580974	39580974	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIN	22944	broad.mit.edu	37	10	7820806	7820806	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36352609	36352609	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70293636	70293636	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86313007	86313007	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK4	9622	broad.mit.edu	37	19	51410285	51410285	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KL	9365	broad.mit.edu	37	13	33635564	33635565	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53165920	53165920	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	118298088	118298088	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTN1	3895	broad.mit.edu	37	14	56125368	56125368	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143799869	143799869	+	3'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129371197	129371197	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4	113251	broad.mit.edu	37	12	50835427	50835427	+	Splice_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136570154	136570154	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16900063	16900063	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88445600	88445600	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDOC1L	84247	broad.mit.edu	37	22	44892764	44892764	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71974057	71974057	+	Splice_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202287186	202287186	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL1	340596	broad.mit.edu	37	X	111914743	111914743	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55110827	55110827	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54782199	54782199	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPI	149998	broad.mit.edu	37	21	15561682	15561682	+	Silent	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2	10960	broad.mit.edu	37	5	176765495	176765495	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC168474	168474	broad.mit.edu	37	7	64312984	64312984	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283922	283922	broad.mit.edu	37	16	74387666	74387666	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15322362	15322362	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653544	653544	broad.mit.edu	37	4	190989617	190989617	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC729156	729156	broad.mit.edu	37	7	66305037	66305037	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22764631	22764631	+	Intron	SNP	C	A	A	rs139660309	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118123383	118123383	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118140004	118140004	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONRF3	79836	broad.mit.edu	37	X	118148065	118148065	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160978463	160978463	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99753744	99753744	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141267686	141267686	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141771071	141771071	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57578892	57578892	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170044911	170044911	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC47	57470	broad.mit.edu	37	1	3697774	3697774	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	40137252	40137252	+	Silent	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133584708	133584708	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70339351	70339351	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8A	56262	broad.mit.edu	37	9	131678369	131678369	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85531673	85531673	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77748824	77748824	+	5'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM3	27258	broad.mit.edu	37	3	14220343	14220343	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUC7L	55692	broad.mit.edu	37	16	239997	239997	+	Missense_Mutation	SNP	C	A	A	rs146490197		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24759796	24759796	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6G6F	259215	broad.mit.edu	37	6	31675569	31675569	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30900869	30900869	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA8	4107	broad.mit.edu	37	X	149013595	149013595	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGT1	84061	broad.mit.edu	37	X	77112936	77112936	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65268388	65268388	+	RNA	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65268419	65268419	+	RNA	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2B2	23324	broad.mit.edu	37	4	6606840	6606840	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164466680	164466680	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBOAT1	154141	broad.mit.edu	37	6	20152973	20152973	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTS1	28985	broad.mit.edu	37	X	119744850	119744850	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90398394	90398394	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	151148206	151148206	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED28	80306	broad.mit.edu	37	4	17616232	17616232	+	5'Flank	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2D	4209	broad.mit.edu	37	1	156437512	156437512	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL13	51603	broad.mit.edu	37	1	171753006	171753006	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL3	56339	broad.mit.edu	37	14	21971722	21971722	+	Splice_Site	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFN1	55669	broad.mit.edu	37	3	179069732	179069732	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141734378	141734378	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517B	574483	broad.mit.edu	37	19	54224259	54224259	+	5'Flank	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR524	574478	broad.mit.edu	37	19	54212161	54212161	+	5'Flank	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145076265	145076265	+	5'Flank	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151944808	151944808	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21962398	21962398	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLST8	64223	broad.mit.edu	37	16	2258359	2258359	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102742689	102742689	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP14	4323	broad.mit.edu	37	14	23313505	23313505	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89053741	89053741	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP25	64386	broad.mit.edu	37	16	3107056	3107056	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGS	7841	broad.mit.edu	37	2	74688563	74688563	+	Missense_Mutation	SNP	C	A	A	rs35533773	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132636726	132636726	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP1	4354	broad.mit.edu	37	X	154014610	154014610	+	Silent	SNP	C	A	A	rs150129127	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP3	4356	broad.mit.edu	37	17	41891509	41891509	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A3	932	broad.mit.edu	37	11	59837042	59837042	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47690292	47690292	+	Silent	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH3	4437	broad.mit.edu	37	5	80071675	80071675	+	Intron	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFR	4524	broad.mit.edu	37	1	11850985	11850985	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR8	55613	broad.mit.edu	37	X	63490911	63490911	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1A	4543	broad.mit.edu	37	4	187455689	187455689	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30604933	30604934	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	8996403	8996403	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9070212	9070212	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089511	9089511	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9090058	9090058	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100680280	100680280	+	Silent	SNP	G	T	T	rs141016213	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1272644	1272644	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1272646	1272646	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXI1	4601	broad.mit.edu	37	10	111987959	111987959	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3228256	3228256	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3242605	3242605	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108107873	108107873	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23874718	23874718	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL6	4637	broad.mit.edu	37	12	56552540	56552540	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34864956	34864956	+	Silent	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1C	4641	broad.mit.edu	37	17	1383807	1383807	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26310614	26310614	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69909840	69909840	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62839282	62839282	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV1	89796	broad.mit.edu	37	1	201754446	201754446	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90994912	90994912	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145302524	145302524	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA4	8031	broad.mit.edu	37	10	51585241	51585241	+	Missense_Mutation	SNP	A	G	G	rs61754798	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR2	9612	broad.mit.edu	37	12	124826522	124826522	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA9	4704	broad.mit.edu	37	12	4796315	4796315	+	3'UTR	SNP	G	T	T	rs3210088	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152362826	152362826	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27064382	27064382	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20948922	20948922	+	Silent	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170985	45170985	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29663769	29663769	+	Silent	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHEDC2	133308	broad.mit.edu	37	4	103964603	103964603	+	Splice_Site	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5827013	5827013	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	6069589	6069589	+	5'UTR	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP12	91662	broad.mit.edu	37	19	54314284	54314284	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5415753	5415753	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55502017	55502017	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC2L	26155	broad.mit.edu	37	1	888700	888700	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH3	4854	broad.mit.edu	37	19	15295220	15295220	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	26939563	26939563	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1	4864	broad.mit.edu	37	18	21131617	21131617	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPM1	4869	broad.mit.edu	37	5	170819773	170819773	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153665758	153665759	+	Intron	DNP	CC	AA	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY5R	4889	broad.mit.edu	37	4	164271731	164271731	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NQO1	1728	broad.mit.edu	37	16	69760297	69760297	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A2	4929	broad.mit.edu	37	2	157186088	157186088	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP3	56675	broad.mit.edu	37	11	9007375	9007375	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105179071	105179071	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50883611	50883611	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64390132	64390133	+	Intron	DNP	CC	AG	AG			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	80164043	80164043	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN3	63899	broad.mit.edu	37	3	93794945	93794945	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107867647	107867647	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102339315	102339315	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167182132	167182132	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78387253	78387253	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H1	26539	broad.mit.edu	37	19	15918683	15918683	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158548798	158548798	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A5	393046	broad.mit.edu	37	7	143747954	143747954	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925686	27925686	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248186052	248186052	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308680	248308680	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458178	248458178	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637213	248637213	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247654685	247654685	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C12	283093	broad.mit.edu	37	11	50003113	50003113	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515616	51515616	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20295950	20295950	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406518	55406518	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AN1	390195	broad.mit.edu	37	11	59131885	59131885	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55606148	55606148	+	5'Flank	SNP	G	T	T	rs17148157		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97852389	97852389	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H6	79295	broad.mit.edu	37	3	97983970	97983970	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M3	219482	broad.mit.edu	37	11	56237227	56237227	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904484	55904484	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904892	55904892	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9K2	441639	broad.mit.edu	37	12	55524042	55524042	+	Missense_Mutation	SNP	C	G	G	rs143111490		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149916813	149916813	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX1	5013	broad.mit.edu	37	2	63280185	63280185	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX4	5025	broad.mit.edu	37	12	121659800	121659800	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131546279	131546279	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PA2G4	5036	broad.mit.edu	37	12	56505444	56505444	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90691248	90691248	+	Silent	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALLD	23022	broad.mit.edu	37	4	169589278	169589278	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112900028	112900028	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPD7	11044	broad.mit.edu	37	5	6738755	6738755	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176811562	176811562	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBLD	64081	broad.mit.edu	37	10	70048877	70048877	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBLD	64081	broad.mit.edu	37	10	70056663	70056663	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164769160	164769160	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91238181	91238181	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55626670	55626670	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55626692	55626692	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	56360535	56360535	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH19	57526	broad.mit.edu	37	X	99551618	99551618	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141248409	141248409	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA5	56143	broad.mit.edu	37	5	140203112	140203112	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140228509	140228509	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140573565	140573565	+	Silent	SNP	G	T	T	rs17844567	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594394	140594394	+	Silent	SNP	C	A	A	rs3822336		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140503357	140503357	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140532100	140532100	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140567370	140567370	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140569352	140569352	+	3'UTR	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140569385	140569385	+	3'UTR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA6	56109	broad.mit.edu	37	5	140755906	140755906	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140774460	140774460	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140730539	140730539	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCIF1	63935	broad.mit.edu	37	20	44575086	44575086	+	Intron	SNP	C	A	A	rs145344384	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82585225	82585225	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47783483	47783483	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1A	5130	broad.mit.edu	37	3	195997349	195997349	+	Silent	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD4	27250	broad.mit.edu	37	10	112657765	112657766	+	Intron	INS	-	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144866024	144866024	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144882848	144882848	+	Silent	SNP	C	A	A	rs146547581	byFrequency	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122869313	122869313	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20410442	20410442	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM5	10611	broad.mit.edu	37	4	95503804	95503804	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDXDC2	283970	broad.mit.edu	37	16	70010678	70010678	+	3'UTR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELI1	57162	broad.mit.edu	37	2	64323347	64323347	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197729738	197729738	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD5	79605	broad.mit.edu	37	1	230486647	230486647	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77381302	77381302	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM2	55276	broad.mit.edu	37	4	37841677	37841677	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58349509	58349509	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOX2B	8929	broad.mit.edu	37	4	41749304	41749304	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS2	9063	broad.mit.edu	37	18	44424712	44424712	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18491577	18491577	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106513371	106513371	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106523403	106523403	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22839534	22839534	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15509288	15509288	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITRM1	10531	broad.mit.edu	37	10	3181348	3181348	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2	5311	broad.mit.edu	37	4	88996742	88996742	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110477209	110477209	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP4	8502	broad.mit.edu	37	2	159530449	159530449	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8722135	8722135	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64026145	64026145	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155199127	155199127	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131960327	131960327	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132093277	132093277	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23692542	23692542	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L5	5383	broad.mit.edu	37	7	74310323	74310323	+	5'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNKD	25953	broad.mit.edu	37	2	219137340	219137340	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133219373	133219373	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133253294	133253294	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38164532	38164532	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16279214	16279214	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287480	16287480	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARD	5467	broad.mit.edu	37	6	35393636	35393636	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23825898	23825898	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAT	5471	broad.mit.edu	37	4	57267741	57267741	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIAL4G	644591	broad.mit.edu	37	1	143767569	143767569	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIF	10105	broad.mit.edu	37	10	81108851	81108851	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3C	55012	broad.mit.edu	37	14	35560259	35560259	+	Intron	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5C	5527	broad.mit.edu	37	14	102359504	102359504	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5D	5528	broad.mit.edu	37	6	42977129	42977129	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT2	9374	broad.mit.edu	37	6	32130370	32130370	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129781911	129781911	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522959	23522959	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	169953139	169953139	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD2	25865	broad.mit.edu	37	19	47181640	47181640	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS1	5631	broad.mit.edu	37	X	106882436	106882436	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSAP	5660	broad.mit.edu	37	10	73579616	73579616	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43382204	43382204	+	Silent	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG3	5671	broad.mit.edu	37	19	43236986	43236986	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD2	5708	broad.mit.edu	37	3	184025416	184025416	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11561596	11561596	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTEN	5728	broad.mit.edu	37	10	89717676	89717676	+	Missense_Mutation	SNP	G	T	T	rs121909235		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGS1	5742	broad.mit.edu	37	9	125148974	125148974	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27277594	27277594	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8504367	8504367	+	Silent	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157926489	157926490	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40770554	40770554	+	Splice_Site	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX4	390667	broad.mit.edu	37	16	1537689	1537689	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52232511	52232511	+	Silent	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9318050	9318050	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRFPR	84109	broad.mit.edu	37	4	122250567	122250567	+	Silent	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76255263	76255263	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L1	5890	broad.mit.edu	37	14	68582178	68582178	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85097216	85097216	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5921197	5921197	+	Intron	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF3	10411	broad.mit.edu	37	12	48131965	48131965	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF3	10411	broad.mit.edu	37	12	48143890	48143890	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPSN	5913	broad.mit.edu	37	11	47464332	47464332	+	Missense_Mutation	SNP	G	A	A	rs121909257		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARG	5916	broad.mit.edu	37	12	53607810	53607810	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114374917	114374917	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBPMS	11030	broad.mit.edu	37	8	30407059	30407059	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCSD1	92241	broad.mit.edu	37	1	167666237	167666237	+	Intron	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RECQL4	9401	broad.mit.edu	37	8	145737082	145737082	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313600	79313600	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3262874	3262874	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107105339	107105339	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109695218	109695218	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGAG1	57529	broad.mit.edu	37	X	109696443	109696443	+	Silent	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS10	6001	broad.mit.edu	37	10	121275212	121275212	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192153501	192153501	+	Silent	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101011627	101011627	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS22	26166	broad.mit.edu	37	8	101065029	101065030	+	Splice_Site	DNP	CC	AA	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72431619	72431619	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	73029202	73029202	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182617465	182617465	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74470329	74470329	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC3	79608	broad.mit.edu	37	11	8190446	8190446	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104930640	104930640	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS4	140730	broad.mit.edu	37	20	43386670	43386670	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87013131	87013131	+	Intron	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87565663	87565663	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEL	6041	broad.mit.edu	37	1	182554734	182554734	+	Missense_Mutation	SNP	C	A	A	rs141194514		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF168	165918	broad.mit.edu	37	3	196202058	196202058	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF17	56163	broad.mit.edu	37	13	25399823	25399823	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF20	56254	broad.mit.edu	37	9	104314720	104314720	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24619313	24619313	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78766486	78766486	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174588	79174588	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124756925	124756925	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK1	6093	broad.mit.edu	37	18	18534673	18534673	+	Intron	SNP	C	A	A	rs147691909	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117718356	117718356	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113313513	113313513	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113332509	113332509	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA5	9252	broad.mit.edu	37	14	91356896	91356896	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPUSD2	27079	broad.mit.edu	37	15	40864089	40864089	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTL1	388015	broad.mit.edu	37	14	101348403	101348403	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN4	57142	broad.mit.edu	37	2	55201711	55201711	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92988184	92988184	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1T1	862	broad.mit.edu	37	8	92998232	92998232	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNX1	861	broad.mit.edu	37	21	36164675	36164675	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237774250	237774250	+	Silent	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD3	154075	broad.mit.edu	37	6	130530639	130530640	+	Splice_Site	DNP	CC	AA	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMHD1	25939	broad.mit.edu	37	20	35559071	35559071	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAPER	49855	broad.mit.edu	37	15	76866634	76866634	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166895908	166895908	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167322380	167322380	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71427750	71427750	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24B	10427	broad.mit.edu	37	4	110445850	110445850	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84697506	84697506	+	Splice_Site	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4C	54910	broad.mit.edu	37	2	97527282	97527282	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74706921	74706921	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61260167	61260167	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61305167	61305167	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB9	5272	broad.mit.edu	37	6	2895552	2895552	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30735151	30735151	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198274609	198274609	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65830394	65830394	+	Intron	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT1	51460	broad.mit.edu	37	3	52945171	52945172	+	Frame_Shift_Ins	INS	-	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS12	140890	broad.mit.edu	37	5	65458163	65458163	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCA	6442	broad.mit.edu	37	17	48244690	48244690	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	13947822	13947822	+	3'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52103484	52103484	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC12	89858	broad.mit.edu	37	19	52002985	52002985	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52031191	52031191	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L3	23094	broad.mit.edu	37	19	38621385	38621385	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164710112	164710112	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN1	122060	broad.mit.edu	37	13	78337372	78337372	+	3'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99337125	99337125	+	Silent	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A5	26503	broad.mit.edu	37	6	74351499	74351499	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A2	6571	broad.mit.edu	37	10	119026637	119026637	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A10	1468	broad.mit.edu	37	17	79671816	79671816	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92374580	92374580	+	Splice_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A6	28965	broad.mit.edu	37	5	128302299	128302299	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57182385	57182385	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10916588	10916588	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A11	284525	broad.mit.edu	37	1	173486700	173486700	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A4	389015	broad.mit.edu	37	2	103142688	103142688	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B1	10599	broad.mit.edu	37	12	21358830	21358830	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO5A1	81796	broad.mit.edu	37	8	70710969	70710969	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK1	114798	broad.mit.edu	37	13	84453902	84453902	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144904084	144904084	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88330080	88330080	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA1	6594	broad.mit.edu	37	X	128650515	128650515	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA5	8467	broad.mit.edu	37	4	144465746	144465746	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47703821	47703821	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183511264	183511264	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMOX	54498	broad.mit.edu	37	20	4167988	4167988	+	Silent	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD1	150572	broad.mit.edu	37	2	88407897	88407897	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10286783	10286783	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPN	6638	broad.mit.edu	37	15	25223019	25223019	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX11	29916	broad.mit.edu	37	17	46196270	46196270	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX32	254122	broad.mit.edu	37	11	65620114	65620114	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106970800	106970800	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121358826	121358826	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS1	6654	broad.mit.edu	37	2	39285871	39285871	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23757422	23757422	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231109676	231109676	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49067154	49067154	+	Silent	SNP	C	A	A	rs146477955	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA8	145946	broad.mit.edu	37	15	97326791	97326791	+	5'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE3	441272	broad.mit.edu	37	7	99917255	99917255	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35628757	35628757	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK2	9806	broad.mit.edu	37	10	73826608	73826608	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRY3	10251	broad.mit.edu	37	X	155003662	155003662	+	Silent	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158582642	158582642	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158621055	158621055	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627430	158627430	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41038431	41038431	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN5	51332	broad.mit.edu	37	15	42156074	42156074	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGN	5552	broad.mit.edu	37	10	70847845	70847846	+	5'UTR	DNP	GA	AG	AG			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRMS	6725	broad.mit.edu	37	20	62173473	62173473	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104885242	104885242	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSTR4	6754	broad.mit.edu	37	20	23017003	23017003	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107423432	107423432	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	77093237	77093237	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52535331	52535331	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAC2	342667	broad.mit.edu	37	17	37370512	37370512	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK11	6794	broad.mit.edu	37	19	1220410	1220410	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX17	55014	broad.mit.edu	37	9	102691003	102691003	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4452618	4452618	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48026985	48026985	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SURF1	6834	broad.mit.edu	37	9	136221852	136221852	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113173903	113173903	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152647561	152647561	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152784407	152784407	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO2	171024	broad.mit.edu	37	4	119951485	119951485	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL3	94120	broad.mit.edu	37	6	159146599	159146599	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR8	83551	broad.mit.edu	37	6	132874344	132874344	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	7866631	7866631	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAGAP	117289	broad.mit.edu	37	6	159459136	159459136	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32803144	32803144	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R3	50831	broad.mit.edu	37	7	141463882	141463882	+	5'Flank	SNP	G	T	T	rs17162473	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D2	55357	broad.mit.edu	37	9	100965523	100965523	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106083498	106083498	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1L	256536	broad.mit.edu	37	10	133058582	133058582	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1A	8115	broad.mit.edu	37	14	96178615	96178615	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDG	6996	broad.mit.edu	37	12	104379502	104379502	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156831356	156831356	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEAD2	8463	broad.mit.edu	37	19	49846499	49846499	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102904351	102904351	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT5	146279	broad.mit.edu	37	16	10788207	10788207	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEK	7010	broad.mit.edu	37	9	27168459	27168459	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TELO2	9894	broad.mit.edu	37	16	1552599	1552599	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERT	7015	broad.mit.edu	37	5	1278900	1278900	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	69843951	69843951	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	70080747	70080747	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10415182	10415183	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGIF2	60436	broad.mit.edu	37	20	35219804	35219804	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2413145	2413145	+	Silent	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43568989	43568989	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133983961	133983961	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP6	152815	broad.mit.edu	37	4	76452177	76452177	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79368070	79368070	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THNSL2	55258	broad.mit.edu	37	2	88474960	88474960	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THUMPD1	55623	broad.mit.edu	37	16	20748497	20748497	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THY1	7070	broad.mit.edu	37	11	119290905	119290905	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAF1	9220	broad.mit.edu	37	17	27401083	27401083	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM135	65084	broad.mit.edu	37	11	86807186	86807186	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM14B	81853	broad.mit.edu	37	6	10749748	10749748	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM164	84187	broad.mit.edu	37	X	109414925	109414925	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM17	200728	broad.mit.edu	37	2	62759683	62759683	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42565651	42565651	+	5'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8B	51754	broad.mit.edu	37	9	35853119	35853119	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS3	64699	broad.mit.edu	37	21	43796840	43796840	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37466469	37466469	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170786812	170786812	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170846537	170846537	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI1	7135	broad.mit.edu	37	1	201382239	201382239	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNN	63923	broad.mit.edu	37	1	175086266	175086266	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC18	84629	broad.mit.edu	37	7	5352292	5352292	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218674735	218674735	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP2B	7155	broad.mit.edu	37	3	25654005	25654005	+	Splice_Site	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM3	7170	broad.mit.edu	37	1	154144374	154144374	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1497701	1497701	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPP1	1200	broad.mit.edu	37	11	6637657	6637657	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10920032	10920032	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF4	9618	broad.mit.edu	37	17	27076266	27076266	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRDN	10345	broad.mit.edu	37	6	123545116	123545116	+	Intron	SNP	A	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73012670	73012670	+	Splice_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73057028	73057028	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114482933	114482933	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM38	10475	broad.mit.edu	37	6	25973185	25973185	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM42	287015	broad.mit.edu	37	3	140396907	140396907	+	Translation_Start_Site	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189018444	189018444	+	Intron	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38357466	38357466	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73442942	73442942	+	Intron	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234916722	234916722	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSG101	7251	broad.mit.edu	37	11	18505434	18505434	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768669	31768669	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN5	10098	broad.mit.edu	37	4	99403430	99403430	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43436154	43436154	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC1	7265	broad.mit.edu	37	5	159476456	159476456	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47256256	47256256	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179397295	179397295	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179482722	179482722	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179567381	179567381	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179599067	179599067	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179648941	179648942	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54946637	54946637	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH3	80727	broad.mit.edu	37	7	2689476	2689476	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19752292	19752292	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57599371	57599371	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYMS	7298	broad.mit.edu	37	18	662352	662352	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154208958	154208958	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2A	7319	broad.mit.edu	37	X	118716966	118716966	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR1	197131	broad.mit.edu	37	15	43244543	43244543	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR2	23304	broad.mit.edu	37	6	42629984	42629984	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCP1	7350	broad.mit.edu	37	4	141483349	141483349	+	Silent	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCC	55245	broad.mit.edu	37	20	33969745	33969745	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216073298	216073298	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216373189	216373189	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23096251	23096251	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42672379	42672379	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52443670	52443670	+	IGR	SNP	G	C	C	rs144933505	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18210585	18210585	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	20596654	20596654	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120673	49120673	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49920636	49920636	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55277707	55277707	+	IGR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55734955	55734955	+	IGR	SNP	G	T	T	rs78020990	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064457	56064457	+	IGR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59259141	59259141	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	91894973	91894973	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	19566410	19566410	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33607822	33607822	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34317758	34317758	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53125312	53125312	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63396521	63396521	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74042528	74042528	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75057925	75057925	+	IGR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80647288	80647288	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	94915718	94915718	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97639016	97639016	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19956618	19956618	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56574153	56574153	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88546278	88546278	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443682	19443682	+	IGR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806819	19806819	+	IGR	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147188	20147188	+	IGR	SNP	G	T	T	rs8008948		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147261	20147261	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43744527	43744527	+	IGR	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20193005	20193005	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20482123	20482123	+	IGR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35413902	35413902	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	94577505	94577505	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	11337439	11337439	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20740554	20740554	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	30549416	30549416	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32416442	32416442	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32621185	32621185	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32626928	32626928	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32859322	32859322	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412761	33412761	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33527905	33527905	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34727176	34727176	+	IGR	SNP	G	T	T	rs111914514	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60391277	60391277	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20487075	20487075	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20515873	20515873	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	28862399	28862399	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3019648	3019648	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	3019945	3019945	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22647425	22647425	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688052	23688052	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53202588	53202588	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53202590	53202590	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	56718563	56718563	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121484649	121484649	+	IGR	SNP	C	A	A	rs2128564		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	121485073	121485073	+	IGR	SNP	A	C	C	rs4092814		TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065397	149065397	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149096525	149096525	+	IGR	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158694635	158694635	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216959	192216959	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	63826316	63826316	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21695946	21695946	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104111064	104111064	+	IGR	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104240331	104240331	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107315099	107315099	+	IGR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131415095	131415095	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	146584935	146584935	+	IGR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181738130	181738130	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	190177234	190177234	+	IGR	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208519607	208519607	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	233280871	233280871	+	IGR	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71405777	71405777	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872965	91872965	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924767	91924767	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92150368	92150368	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92151593	92151593	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	128433379	128433379	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	15176092	15176092	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40364351	40364351	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75378278	75378278	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75385438	75385438	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90257383	90257383	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285366	96285367	+	IGR	DNP	CC	AA	AA			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27162524	27162524	+	IGR	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63355746	63355746	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63684171	63684171	+	IGR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297696	65297696	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	95117624	95117624	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105751442	105751442	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126479160	126479160	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23689243	23689243	+	IGR	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	39721207	39721207	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	78005432	78005433	+	IGR	DNP	GG	AC	AC			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84761051	84761051	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	109611068	109611068	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	117113196	117113196	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127684233	127684233	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27529178	27529179	+	IGR	DNP	GG	TT	TT			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49219018	49219018	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52743533	52743533	+	IGR	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58446513	58446513	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143855125	143855125	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	154898076	154898076	+	IGR	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54724155	54724155	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57215938	57215938	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216380	57216380	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268469	57268469	+	IGR	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194324	88194324	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106208598	106208598	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107229494	107229494	+	IGR	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	115331068	115331068	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	143940082	143940082	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	15664188	15664188	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43125427	43125427	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47512014	47512014	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	51705449	51705449	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70855840	70855840	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74827049	74827049	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	87055564	87055565	+	IGR	INS	-	T	T	rs148428564	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121526456	121526456	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	19895870	19895870	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	2875522	2875522	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32334135	32334135	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	35148862	35148862	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	79164257	79164257	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82006284	82006284	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84702669	84702669	+	IGR	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864194	110864194	+	IGR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	11722264	11722264	+	IGR	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128176533	128176533	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	131265328	131265328	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135378525	135378525	+	IGR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141282256	141282256	+	IGR	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145082552	145082552	+	IGR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16492500	16492500	+	IGR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	23093824	23093824	+	IGR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26515223	26515223	+	IGR	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	45773201	45773202	+	IGR	INS	-	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48299990	48299990	+	IGR	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87017638	87017638	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VMA21	203547	broad.mit.edu	37	X	150573589	150573589	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133047925	133047925	+	3'UTR	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG2	23584	broad.mit.edu	37	11	124619716	124619716	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128471192	128471192	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113128125	113128125	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36550989	36550989	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190323435	190323435	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC8	90199	broad.mit.edu	37	20	44207837	44207837	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228238405	228238405	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69969913	69969913	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAGE5	170627	broad.mit.edu	37	X	52840355	52840355	+	5'Flank	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73071294	73071294	+	RNA	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YWHAG	7532	broad.mit.edu	37	7	75959381	75959381	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB11	27107	broad.mit.edu	37	3	101378727	101378727	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111624702	111624702	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74742811	74742811	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFC3H1	196441	broad.mit.edu	37	12	72030897	72030897	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72821947	72821947	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72984794	72984794	+	Silent	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP90	146198	broad.mit.edu	37	16	68598006	68598006	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68236199	68236199	+	Intron	SNP	T	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68274396	68274396	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF114	163071	broad.mit.edu	37	19	48789178	48789178	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF117	51351	broad.mit.edu	37	7	64442493	64442493	+	5'UTR	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58574842	58574842	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF177	7730	broad.mit.edu	37	19	9490795	9490795	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF253	56242	broad.mit.edu	37	19	19976831	19976831	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133732032	133732032	+	Intron	DEL	T	-	-			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF28	7576	broad.mit.edu	37	19	53321189	53321189	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF37A	7587	broad.mit.edu	37	10	38403681	38403681	+	Splice_Site	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF439	90594	broad.mit.edu	37	19	11976950	11976950	+	5'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF468	90333	broad.mit.edu	37	19	53352308	53352308	+	Intron	SNP	G	T	T	rs115049665	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF484	83744	broad.mit.edu	37	9	95618559	95618559	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934718	30934718	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF549	256051	broad.mit.edu	37	19	58042443	58042443	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF574	64763	broad.mit.edu	37	19	42583284	42583284	+	Silent	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123980214	123980214	+	Silent	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF621	285268	broad.mit.edu	37	3	40573561	40573561	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22362761	22362761	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247150209	247150209	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247171298	247171298	+	5'UTR	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF738	148203	broad.mit.edu	37	19	21568629	21568629	+	3'UTR	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134427997	134427997	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768614	57768614	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57175225	57175225	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23557440	23557440	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939511	22939511	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT1	10467	broad.mit.edu	37	7	100866000	100866000	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5B	342933	broad.mit.edu	37	19	56702158	56702158	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM4	65249	broad.mit.edu	37	19	13939433	13939433	+	Intron	SNP	C	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31286807	31286807	+	Intron	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8048247	8048247	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22265701	22265701	+	Intron	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22293994	22293994	+	Intron	SNP	T	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28604678	28604678	+	Intron	SNP	G	T	T	rs11569772	by1000genomes	TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647451	33647451	+	RNA	SNP	T	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33784704	33784705	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22779973	22779973	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90049880	90049880	+	Intron	SNP	G	C	C			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	120314870	120314870	+	Intron	SNP	A	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	13790974	13790974	+	5'Flank	SNP	C	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150201314	150201314	+	Intron	SNP	C	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	145318037	145318037	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57390503	57390503	+	Intron	SNP	A	G	G			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746173	90746173	+	Silent	SNP	G	T	T			TCGA-05-4417-01A-22D-1855-08	TCGA-05-4417-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
