Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6803733	6803735	+	Intron	DEL	AGC	-	-	rs113991246	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9264982	9264982	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A4GNT	51146	broad.mit.edu	37	3	137850093	137850093	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57220230	57220230	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB7	22	broad.mit.edu	37	X	74273171	74273171	+	3'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48742558	48742558	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31438993	31438993	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32478511	32478511	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	141011154	141011154	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20551901	20551902	+	Intron	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2B	348158	broad.mit.edu	37	16	20554515	20554515	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTL6B	51412	broad.mit.edu	37	7	100253001	100253001	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR8	93973	broad.mit.edu	37	3	53911340	53911340	+	Silent	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM33	80332	broad.mit.edu	37	20	3653164	3653164	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106236091	106236091	+	RNA	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106926676	106926676	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107048540	107048540	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107062376	107062376	+	RNA	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107114318	107114318	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33630991	33630991	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33661875	33661875	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33881244	33881244	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77356279	77356279	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77369848	77369848	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS20	80070	broad.mit.edu	37	12	43860422	43860422	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178559693	178559693	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18622307	18622307	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD1	118	broad.mit.edu	37	4	2883767	2883767	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD1	118	broad.mit.edu	37	4	2895664	2895664	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1B	125	broad.mit.edu	37	4	100237232	100237232	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159344556	159344556	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58126272	58126272	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTRAP	57085	broad.mit.edu	37	1	11807454	11807454	+	Intron	SNP	G	T	T	rs115781535	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109663831	109663831	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62287506	62287506	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134222842	134222842	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKTIP	64400	broad.mit.edu	37	16	53534371	53534371	+	Intron	SNP	C	T	T	rs140416148	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A1	216	broad.mit.edu	37	9	75531803	75531803	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG14	199857	broad.mit.edu	37	1	95530454	95530454	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113345153	113345153	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113351753	113351753	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMACR	23600	broad.mit.edu	37	5	33989444	33989444	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38530637	38530637	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY1A	276	broad.mit.edu	37	1	104203099	104203099	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2A	279	broad.mit.edu	37	1	104162523	104162523	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41525923	41525923	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	113747715	113747715	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114238882	114238882	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54526589	54526589	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125592488	125592488	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640282	99640282	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99776726	99776726	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101504194	101504194	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8	653145	broad.mit.edu	37	10	47059019	47059019	+	Intron	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201474149	201474149	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201499527	201499527	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1B1	162	broad.mit.edu	37	22	29735017	29735017	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77412195	77412195	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP2	116984	broad.mit.edu	37	4	36230755	36230755	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36272096	36272096	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARR3	407	broad.mit.edu	37	X	69497335	69497335	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	122954456	122954456	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155327184	155327184	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASIP	434	broad.mit.edu	37	20	32848270	32848270	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197093426	197093426	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119722275	119722275	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976578	119976578	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF3	467	broad.mit.edu	37	1	212788267	212788267	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG3	64422	broad.mit.edu	37	3	112255264	112255264	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138864752	138864752	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10385773	10385773	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203667345	203667346	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C2	9914	broad.mit.edu	37	16	84456064	84456064	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3553326	3553326	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUP1	550	broad.mit.edu	37	2	74755625	74755625	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70255417	70255418	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXL	558	broad.mit.edu	37	19	41745210	41745210	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039062	11039062	+	3'UTR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11071480	11071480	+	Intron	SNP	A	C	C	rs209020		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171509980	171509980	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2A	11176	broad.mit.edu	37	12	57005320	57005320	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11B	64919	broad.mit.edu	37	14	99723646	99723646	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL7C	9274	broad.mit.edu	37	16	30899222	30899223	+	Frame_Shift_Ins	INS	-	G	G	rs150838242		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9	607	broad.mit.edu	37	1	147094086	147094086	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND4	389206	broad.mit.edu	37	4	42122223	42122223	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60461805	60461805	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32520692	32520692	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112992161	112992161	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13603790	13603790	+	Silent	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13616186	13616186	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32841968	32841968	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41244214	41244214	+	Nonsense_Mutation	SNP	C	A	A	rs80357903		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRMS1L	84312	broad.mit.edu	37	14	36334116	36334116	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BST2	684	broad.mit.edu	37	19	17514464	17514464	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD11	121551	broad.mit.edu	37	12	108006518	108006518	+	Intron	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf122	387718	broad.mit.edu	37	10	127350646	127350646	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf128	170371	broad.mit.edu	37	10	50373943	50373943	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61544844	61544844	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf26	84190	broad.mit.edu	37	12	82783762	82783762	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf106	55320	broad.mit.edu	37	14	45704996	45704996	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf115	55237	broad.mit.edu	37	14	74824464	74824464	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf58	390637	broad.mit.edu	37	15	90784186	90784186	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30804956	30804956	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51770835	51770835	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QL1	10882	broad.mit.edu	37	17	43045078	43045078	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF7	114905	broad.mit.edu	37	4	15444425	15444425	+	3'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179504097	179504097	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf49	84066	broad.mit.edu	37	1	178489804	178489804	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55108276	55108276	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf200	253868	broad.mit.edu	37	20	61143677	61143677	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf16	84226	broad.mit.edu	37	2	27804470	27804470	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf21	152002	broad.mit.edu	37	3	194851814	194851815	+	Intron	DEL	AC	-	-	rs58120378		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf67	200844	broad.mit.edu	37	3	58899744	58899744	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf22	255119	broad.mit.edu	37	4	81586037	81586037	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5975502	5975502	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54034288	54034288	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf15	29113	broad.mit.edu	37	6	31080013	31080013	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118845109	118845109	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf16	10842	broad.mit.edu	37	7	31735162	31735162	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf30	115416	broad.mit.edu	37	7	23340607	23340607	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120739999	120739999	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89887465	89887465	+	Silent	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39316033	39316033	+	Silent	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90502493	90502493	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA13	377677	broad.mit.edu	37	8	86335203	86335203	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181721500	181721500	+	Intron	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	39996496	39996496	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201061308	201061308	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	2024090	2024090	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG3	10368	broad.mit.edu	37	16	24372937	24372937	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85984933	85984933	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAGE1	285782	broad.mit.edu	37	6	7374192	7374192	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALB2	794	broad.mit.edu	37	16	71406162	71406162	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1G	57172	broad.mit.edu	37	1	209773489	209773489	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2D	817	broad.mit.edu	37	4	114458430	114458430	+	Intron	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN3	825	broad.mit.edu	37	15	42652037	42652037	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN7	23473	broad.mit.edu	37	3	15282982	15282982	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPSL	133690	broad.mit.edu	37	5	35921095	35921095	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC3	22794	broad.mit.edu	37	17	38319010	38319010	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC4	113201	broad.mit.edu	37	15	44620906	44620906	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116268244	116268244	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122002778	122002778	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43939215	43939215	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92071603	92071603	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92157944	92157944	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC15	80071	broad.mit.edu	37	11	124857980	124857980	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180365949	180365949	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180366106	180366106	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC68	80323	broad.mit.edu	37	18	52604064	52604064	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112358551	112358551	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31118128	31118128	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB2	9133	broad.mit.edu	37	15	59409338	59409338	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6B	10693	broad.mit.edu	37	17	33259582	33259582	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT7	10574	broad.mit.edu	37	2	73477352	73477352	+	Intron	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158323885	158323885	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35822887	35822887	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160832283	160832283	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD27	939	broad.mit.edu	37	12	6554539	6554540	+	Intron	DNP	GG	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121838342	121838342	+	Silent	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54420757	54420757	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227192648	227192649	+	Intron	DNP	GG	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491817	24491817	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24492867	24492867	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24535332	24535332	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64982694	64982694	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65016088	65016088	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21802410	21802410	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH13	1012	broad.mit.edu	37	16	83821265	83821265	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473300	19473300	+	3'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19916294	19916294	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59167789	59167789	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59221602	59221602	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58557897	58557897	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58559833	58559833	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25572712	25572712	+	Missense_Mutation	SNP	G	C	C	rs138990743		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31287326	31287326	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299469	31299469	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26906108	26906108	+	Silent	SNP	C	A	A	rs141361996		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEACAM16	388551	broad.mit.edu	37	19	45202606	45202606	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPK	64105	broad.mit.edu	37	5	64824356	64824356	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	180064598	180064598	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196706795	196706795	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1B	8208	broad.mit.edu	37	21	37758399	37758399	+	5'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50859935	50859935	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6702114	6702114	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61655383	61655383	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5904628	5904628	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN14	23562	broad.mit.edu	37	21	37833374	37833374	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12B	387837	broad.mit.edu	37	12	10161709	10161709	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10218182	10218182	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122864896	122864896	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140123276	140123276	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140178244	140178245	+	Intron	DNP	GG	TA	TA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNDP1	84735	broad.mit.edu	37	18	72234677	72234677	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57996551	57996551	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87670276	87670276	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100095485	100095485	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76311649	76311649	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76572217	76572217	+	Missense_Mutation	SNP	C	A	A	rs35153994		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101767203	101767203	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101804358	101804358	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70916851	70916851	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94056818	94056818	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139712386	139712386	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86377088	86377088	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189875505	189875505	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110839512	110839512	+	Silent	SNP	C	A	A	rs146480068	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110850855	110850855	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110853257	110853257	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107802318	107802318	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107404923	107404923	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107553847	107553847	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A1	1289	broad.mit.edu	37	9	137622275	137622275	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10116927	10116927	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238303320	238303320	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO6	84940	broad.mit.edu	37	17	27943986	27943986	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	129987584	129987584	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE6	9362	broad.mit.edu	37	14	24542767	24542767	+	Silent	SNP	C	A	A	rs143428110		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211464127	211464127	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207661795	207661795	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1720555	1720555	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28844191	28844191	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43907806	43907806	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRNN	49860	broad.mit.edu	37	1	152382377	152382377	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGC	1420	broad.mit.edu	37	2	208992953	208992953	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115263355	115263355	+	Intron	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSH2	1443	broad.mit.edu	37	17	61949776	61949776	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSHL1	1444	broad.mit.edu	37	17	61987959	61987959	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113418831	113418831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113529289	113529289	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113841824	113841824	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67680438	67680438	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11199628	11199628	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117432054	117432054	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17024634	17024634	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUTC	51076	broad.mit.edu	37	10	101514311	101514311	+	Silent	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC15	51503	broad.mit.edu	37	11	94704361	94704361	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107263483	107263483	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXXC1	30827	broad.mit.edu	37	18	47810824	47810824	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf59	286464	broad.mit.edu	37	X	36103457	36103457	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1A1	1543	broad.mit.edu	37	15	75013626	75013627	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26B1	56603	broad.mit.edu	37	2	72359591	72359591	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP39A1	51302	broad.mit.edu	37	6	46607308	46607308	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP46A1	10858	broad.mit.edu	37	14	100166397	100166397	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15658902	15658902	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480832	57480832	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF17	80067	broad.mit.edu	37	2	172309702	172309702	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886052	88886052	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6646566	6646566	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162745633	162745633	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47853084	47853084	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX58	23586	broad.mit.edu	37	9	32459565	32459565	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB104A	140596	broad.mit.edu	37	8	7698445	7698445	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB116	245930	broad.mit.edu	37	20	29891333	29891333	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29978112	29978112	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197704716	197704716	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186015676	186015676	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	186028967	186028967	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137304455	137304456	+	Intron	DNP	GG	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50118108	50118108	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37639012	37639012	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40	79665	broad.mit.edu	37	17	57684554	57684554	+	3'UTR	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61528110	61528110	+	Silent	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38159274	38159274	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP5	9787	broad.mit.edu	37	14	55621312	55621312	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32591900	32591900	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21678642	21678642	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21813389	21813389	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH12	201625	broad.mit.edu	37	3	57494913	57494913	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38980530	38980530	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72310378	72310378	+	3'UTR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3A	1788	broad.mit.edu	37	2	25463556	25463556	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98087395	98087395	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169150122	169150122	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF3	8110	broad.mit.edu	37	14	73255285	73255285	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35187450	35187450	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27157803	27157803	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105404795	105404795	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105440401	105440401	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56391248	56391248	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56417961	56417961	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56418432	56418432	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103018511	103018511	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44016839	44016839	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71740791	71740791	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71747322	71747322	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233345520	233345520	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECHDC3	79746	broad.mit.edu	37	10	11797576	11797576	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109524265	109524265	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83362384	83362384	+	Silent	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83525686	83525686	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78475144	78475144	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB6	64800	broad.mit.edu	37	22	44063260	44063260	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38418157	38418157	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38451444	38451444	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR2	1959	broad.mit.edu	37	10	64573954	64573954	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELF1	1997	broad.mit.edu	37	13	41507924	41507924	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37296265	37296265	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107506376	107506376	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOF1	84337	broad.mit.edu	37	19	11664641	11664641	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71510331	71510331	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENG	2022	broad.mit.edu	37	9	130587196	130587196	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENKUR	219670	broad.mit.edu	37	10	25279523	25279523	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134851442	134851442	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184295235	184295235	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184296303	184296303	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220154103	220154103	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPX	8288	broad.mit.edu	37	17	56272478	56272478	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212248320	212248320	+	3'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76964383	76964383	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157068490	157068490	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXPH5	23086	broad.mit.edu	37	11	108464276	108464276	+	5'UTR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXTL2	2135	broad.mit.edu	37	1	101354260	101354260	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6224818	6224818	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL2	2151	broad.mit.edu	37	5	75914185	75914185	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2	2147	broad.mit.edu	37	11	46742103	46742103	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57405247	57405247	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107A	11170	broad.mit.edu	37	3	58552961	58552961	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM113A	64773	broad.mit.edu	37	20	2819684	2819684	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A1	92689	broad.mit.edu	37	4	38879976	38879976	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM117A	81558	broad.mit.edu	37	17	47797530	47797530	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139163755	139163755	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164945	139164945	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM160A2	84067	broad.mit.edu	37	11	6235882	6235882	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM163A	148753	broad.mit.edu	37	1	179731541	179731541	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM164C	79696	broad.mit.edu	37	14	75537689	75537689	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15255757	15255757	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM186B	84070	broad.mit.edu	37	12	49994658	49994658	+	Silent	SNP	C	T	T	rs74086906	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM193B	54540	broad.mit.edu	37	5	176966185	176966185	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62148788	62148788	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A2	338811	broad.mit.edu	37	12	62273773	62273773	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A4	151647	broad.mit.edu	37	3	68782208	68782208	+	3'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM41C	284593	broad.mit.edu	37	1	809171	809171	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190195351	190195352	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43627843	43627843	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM78B	149297	broad.mit.edu	37	1	166138688	166138688	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45605177	45605177	+	5'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT1	2195	broad.mit.edu	37	4	187542290	187542290	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92577580	92577580	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN7	129804	broad.mit.edu	37	2	112933262	112933262	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127595074	127595074	+	3'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8173122	8173122	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15927940	15927940	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCAR	2204	broad.mit.edu	37	19	55385745	55385745	+	5'UTR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161559647	161559647	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157666024	157666024	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157512672	157512672	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125082612	125082612	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108380495	108380495	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD5	152273	broad.mit.edu	37	3	14905647	14905647	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102520913	102520913	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155528068	155528068	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27939988	27939988	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97052813	97052813	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152325628	152325628	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ10661	286042	broad.mit.edu	37	8	8098956	8098956	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142469616	142469616	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128490515	128490515	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29001515	29001515	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180039731	180039731	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147003435	147003435	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC8	54752	broad.mit.edu	37	17	33454109	33454109	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLR4	390243	broad.mit.edu	37	11	94040590	94040590	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXG1	2290	broad.mit.edu	37	14	29237372	29237372	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXN1	8456	broad.mit.edu	37	17	26864018	26864018	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29621707	29621707	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29649922	29649922	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131264182	131264182	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1L	83856	broad.mit.edu	37	9	108283609	108283609	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT4	2526	broad.mit.edu	37	11	94278601	94278601	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD4	53828	broad.mit.edu	37	10	43871199	43871199	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39134528	39134528	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46252500	46252500	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27586124	27586124	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26507949	26507950	+	Intron	DNP	GG	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51752879	51752879	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4881555	4881555	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL5	168391	broad.mit.edu	37	7	151700113	151700114	+	Intron	DNP	CT	TC	TC			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARS	2617	broad.mit.edu	37	7	30670943	30670943	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L1	10634	broad.mit.edu	37	22	29706404	29706404	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM1	8521	broad.mit.edu	37	6	52996943	52996943	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDAP1L1	78997	broad.mit.edu	37	20	42885907	42885907	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA3	2676	broad.mit.edu	37	5	137589488	137589488	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34945877	34945877	+	3'UTR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42468079	42468079	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59599272	59599272	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA4	2701	broad.mit.edu	37	1	35260337	35260337	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB4	127534	broad.mit.edu	37	1	35226771	35226771	+	5'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6605162	6605162	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74490446	74490446	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74530506	74530507	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYAT	10249	broad.mit.edu	37	11	58480216	58480216	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4867881	4867881	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMDS	2762	broad.mit.edu	37	6	1726733	1726733	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAI2	2771	broad.mit.edu	37	3	50289130	50289130	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1	2782	broad.mit.edu	37	1	1721833	1721833	+	Splice_Site	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155784289	155784289	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167024389	167024389	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPA33	10223	broad.mit.edu	37	1	167059412	167059412	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135427080	135427080	+	Silent	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR22	2845	broad.mit.edu	37	7	107115572	107115572	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR22	2845	broad.mit.edu	37	7	107115574	107115574	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR56	9289	broad.mit.edu	37	16	57693273	57693273	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112724005	112724006	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113658766	113658766	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165365355	165365355	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRHL2	79977	broad.mit.edu	37	8	102570665	102570665	+	Missense_Mutation	SNP	T	A	A	rs140106332	byFrequency	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153144084	153144084	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	14018831	14018831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2D	2906	broad.mit.edu	37	19	48919120	48919120	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126544734	126544734	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126544739	126544739	+	Splice_Site	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRXCR1	389207	broad.mit.edu	37	4	42895294	42895294	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA2B	2981	broad.mit.edu	37	1	42620603	42620603	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106558195	106558195	+	3'UTR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108647757	108647757	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GULP1	51454	broad.mit.edu	37	2	189447139	189447139	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMH	2999	broad.mit.edu	37	14	25078891	25078891	+	5'Flank	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFV	94239	broad.mit.edu	37	7	44880488	44880488	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39881414	39881414	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45353126	45353126	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN3	57657	broad.mit.edu	37	1	155253818	155253818	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18914095	18914095	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5A	25938	broad.mit.edu	37	14	31762501	31762501	+	3'UTR	DEL	A	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEBP2	23593	broad.mit.edu	37	6	138724533	138724533	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92848713	92848713	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93806163	93806163	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93839337	93839337	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65427076	65427076	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32163806	32163806	+	RNA	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32165204	32165204	+	5'Flank	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89318022	89318022	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91818724	91818724	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91841053	91841053	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFM1	164045	broad.mit.edu	37	1	91851361	91851361	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100134402	100134402	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717114	222717114	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717205	222717205	+	Silent	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2AG	8969	broad.mit.edu	37	6	27100597	27100597	+	5'Flank	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234750380	234750380	+	Missense_Mutation	SNP	C	A	A	rs34042006	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HJURP	55355	broad.mit.edu	37	2	234761203	234761203	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186064378	186064378	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76472657	76472657	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1	3178	broad.mit.edu	37	12	54674565	54674565	+	5'UTR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD2	150280	broad.mit.edu	37	22	30501328	30501328	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA2	3199	broad.mit.edu	37	7	27140754	27140754	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS4	89781	broad.mit.edu	37	22	26868948	26868948	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST5	222537	broad.mit.edu	37	6	114384122	114384122	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD11B1	3290	broad.mit.edu	37	1	209880254	209880254	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTT	3064	broad.mit.edu	37	4	3215520	3215520	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652847	53652852	+	Intron	DEL	GCCGGT	-	-	rs11091285	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71103347	71103347	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95007245	95007245	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICA1	3382	broad.mit.edu	37	7	8268292	8268292	+	Silent	SNP	T	A	A	rs77256293	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52878805	52878805	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDE	3416	broad.mit.edu	37	10	94246967	94246967	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH3B	3420	broad.mit.edu	37	20	2644634	2644634	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDI2	91734	broad.mit.edu	37	10	1070682	1070682	+	5'UTR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT140	9742	broad.mit.edu	37	16	1616396	1616396	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130410317	130410317	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130419493	130419493	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117120265	117120265	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111674800	111674800	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17RD	54756	broad.mit.edu	37	3	57168633	57168633	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103061716	103061716	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1B	3553	broad.mit.edu	37	2	113596233	113596233	+	5'Flank	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102636071	102636071	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27456509	27456509	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166904450	166904450	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP5	162540	broad.mit.edu	37	17	43922523	43922523	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80C	125476	broad.mit.edu	37	18	33060527	33060527	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPW	3653	broad.mit.edu	37	15	25417782	25417782	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	91035818	91035818	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75893525	75893525	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15714633	15714633	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31289293	31289293	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31372361	31372361	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGBL1	9358	broad.mit.edu	37	13	102368050	102368050	+	3'UTR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH4	3700	broad.mit.edu	37	3	52854649	52854649	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITM2C	81618	broad.mit.edu	37	2	231742646	231742646	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35208738	35208738	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123870984	123870984	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB2	8514	broad.mit.edu	37	1	6147572	6147572	+	Splice_Site	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB1	3745	broad.mit.edu	37	20	47991190	47991190	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73480016	73480016	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND3	3752	broad.mit.edu	37	1	112524723	112524723	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211307359	211307359	+	5'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169896510	169896510	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	170162877	170162877	+	3'UTR	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555855	155555855	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215259901	215259901	+	Silent	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196303157	196303157	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36691147	36691147	+	Silent	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36746757	36746757	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36780061	36780061	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55972029	55972029	+	Missense_Mutation	SNP	C	T	T	rs55716939	byFrequency	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0430	9665	broad.mit.edu	37	16	15697934	15697934	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0467	23334	broad.mit.edu	37	1	43897569	43897569	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123230412	123230412	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123264574	123264575	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94007178	94007178	+	Splice_Site	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100056399	100056399	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100133167	100133167	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100136836	100136836	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36868037	36868037	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137521276	137521276	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL1	3802	broad.mit.edu	37	19	55290155	55290155	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55268299	55268299	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158021120	158021120	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF3	51274	broad.mit.edu	37	4	38698682	38698682	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30322102	30322102	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK1	3816	broad.mit.edu	37	19	51327164	51327165	+	5'Flank	DEL	CC	-	-	rs35641597		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135027499	135027499	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398285	25398285	+	Missense_Mutation	SNP	C	A	A	rs121913530		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRIT1	889	broad.mit.edu	37	7	91830661	91830661	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT1	3848	broad.mit.edu	37	12	53071142	53071142	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT31	3881	broad.mit.edu	37	17	39550416	39550416	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT33B	3884	broad.mit.edu	37	17	39521463	39521463	+	Silent	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT34	3885	broad.mit.edu	37	17	39538334	39538334	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52884506	52884506	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT72	140807	broad.mit.edu	37	12	52992565	52992565	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP12-1	353332	broad.mit.edu	37	21	46101811	46101811	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143798074	143798074	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153132753	153132753	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL3	84456	broad.mit.edu	37	6	130460824	130460824	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42158947	42158947	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129571130	129571130	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112512973	112512973	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107601760	107601761	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209803758	209803758	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE2A	353139	broad.mit.edu	37	1	152671551	152671551	+	Silent	SNP	C	A	A	rs61812672		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCN1	3933	broad.mit.edu	37	9	138417048	138417048	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP1	3936	broad.mit.edu	37	13	46704920	46704920	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53277868	53277868	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53282678	53282678	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY1	10637	broad.mit.edu	37	1	226108457	226108457	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD1	93273	broad.mit.edu	37	1	205389526	205389526	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66085595	66085595	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS4	3960	broad.mit.edu	37	19	39294476	39294476	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG1	3978	broad.mit.edu	37	19	48654613	48654613	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA4	23547	broad.mit.edu	37	19	54850071	54850071	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO7	4008	broad.mit.edu	37	13	76414562	76414562	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100133308	100133308	broad.mit.edu	37	10	45622949	45622950	+	Intron	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132257963	132257963	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150776	150776	broad.mit.edu	37	2	132266282	132266282	+	Intron	DEL	G	-	-	rs74537446		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC348926	348926	broad.mit.edu	37	4	3948468	3948468	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374443	374443	broad.mit.edu	37	12	9794419	9794419	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC400759	400759	broad.mit.edu	37	1	89886028	89886028	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440173	440173	broad.mit.edu	37	9	89626801	89626801	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642929	642929	broad.mit.edu	37	9	43147856	43147856	+	5'Flank	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148947900	148947900	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937336	21937336	+	RNA	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12907980	12907980	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91808953	91808953	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22657649	22657649	+	RNA	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR2	9170	broad.mit.edu	37	19	19737528	19737528	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN1	22859	broad.mit.edu	37	19	14296362	14296362	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62598825	62598825	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99753626	99753626	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42356412	42356412	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133859480	133859480	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25257420	25257420	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141283517	141283517	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141291477	141291477	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141625180	141625180	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141641525	141641525	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141806485	141806485	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141819716	141819716	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169995243	169995243	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC23	10233	broad.mit.edu	37	12	7016370	7016370	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B2	147172	broad.mit.edu	37	17	28964384	28964384	+	3'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101524123	101524123	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN3	54674	broad.mit.edu	37	7	110763521	110763521	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77748824	77748824	+	5'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21172210	21172211	+	Missense_Mutation	DNP	TT	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75078141	75078141	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160783797	160783797	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39550144	39550144	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166973455	166973455	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB10	139422	broad.mit.edu	37	X	27840394	27840394	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC2	51438	broad.mit.edu	37	X	141291494	141291494	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAL	4118	broad.mit.edu	37	2	95719286	95719286	+	3'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71492142	71492142	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102501757	102501757	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44067401	44067401	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16090862	16090862	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164854388	164854388	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110521	165110521	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH8	220972	broad.mit.edu	37	10	45958759	45958759	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66429410	66429410	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAX	4149	broad.mit.edu	37	14	65551077	65551077	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD3L1	85509	broad.mit.edu	37	19	8953241	8953241	+	5'Flank	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54824146	54824147	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100368931	100368931	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN2	255231	broad.mit.edu	37	1	85422092	85422092	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCPH1	79648	broad.mit.edu	37	8	6390035	6390035	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46794329	46794329	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD8	256471	broad.mit.edu	37	4	128865259	128865259	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC27382	149047	broad.mit.edu	37	1	78782758	78782758	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12246384	12246384	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519D	574480	broad.mit.edu	37	19	54215657	54215657	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR520D	574482	broad.mit.edu	37	19	54223307	54223307	+	5'Flank	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90883257	90883257	+	5'Flank	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145076409	145076409	+	5'Flank	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKNK1	8569	broad.mit.edu	37	1	47037778	47037778	+	Silent	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN3	7681	broad.mit.edu	37	15	23811385	23811385	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56291140	56291140	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151970872	151970872	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT10	8028	broad.mit.edu	37	10	21959419	21959419	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20413948	20413948	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168271028	168271028	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMADHC	27249	broad.mit.edu	37	2	150426500	150426500	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102819851	102819851	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP8	4317	broad.mit.edu	37	11	102586904	102586904	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90872775	90872775	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10	4343	broad.mit.edu	37	1	113237067	113237067	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60233577	60233577	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60234637	60234637	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSC	9242	broad.mit.edu	37	8	72754983	72754983	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSI2	124540	broad.mit.edu	37	17	55752597	55752597	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1H	4496	broad.mit.edu	37	16	56704919	56704919	+	3'UTR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTERFD1	51001	broad.mit.edu	37	8	97270803	97270803	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF2	22823	broad.mit.edu	37	1	93575764	93575764	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTIF2	4528	broad.mit.edu	37	2	55481789	55481789	+	Splice_Site	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1B	4544	broad.mit.edu	37	11	92700501	92700501	+	5'Flank	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236990306	236990306	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS1	57509	broad.mit.edu	37	8	17542025	17542025	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29855903	29855903	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9006659	9006659	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9016315	9016315	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MVK	4598	broad.mit.edu	37	12	110021523	110021523	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108112926	108112926	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10352228	10352228	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211179685	211179685	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK2	85366	broad.mit.edu	37	20	30419045	30419045	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109459159	109459159	+	Intron	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26224651	26224651	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26457608	26457609	+	Intron	INS	-	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3168821	3168821	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2020395	2020395	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89882099	89882099	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34160733	34160733	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78362297	78362297	+	Splice_Site	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15432849	15432849	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145366709	145366709	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145415248	145415248	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894081	16894082	+	Intron	DEL	AG	-	-	rs35523431		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF6	653149	broad.mit.edu	37	1	108995724	108995724	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145054268	145054269	+	Intron	INS	-	G	G	rs149978567		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158441188	158441189	+	Intron	INS	-	A	A	rs138968761		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00119	348808	broad.mit.edu	37	3	132509106	132509106	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23932081	23932081	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75567205	75567205	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21147170	21147170	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	56010129	56010129	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK3	4752	broad.mit.edu	37	13	52722418	52722418	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52676102	52676102	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21115756	21115756	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77170141	77170141	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236192968	236192968	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236195567	236195567	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX3-1	4824	broad.mit.edu	37	8	23538980	23538980	+	Silent	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC5	84166	broad.mit.edu	37	16	57093549	57093549	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55493371	55493371	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56369278	56369278	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56370504	56370504	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56485012	56485012	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NME6	10201	broad.mit.edu	37	3	48337625	48337625	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26099385	26099385	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66192520	66192520	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR0B1	190	broad.mit.edu	37	X	30326995	30326995	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1D2	9975	broad.mit.edu	37	3	24006669	24006669	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H2	7376	broad.mit.edu	37	19	50881606	50881606	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H3	10062	broad.mit.edu	37	11	47281993	47281993	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRD1	4898	broad.mit.edu	37	1	52280193	52280193	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105132415	105132415	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50758512	50758512	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5C1B	93034	broad.mit.edu	37	2	18768732	18768732	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTN5	126147	broad.mit.edu	37	19	49166837	49166837	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP133	55746	broad.mit.edu	37	1	229636557	229636557	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134073366	134073366	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102338037	102338037	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228444664	228444664	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128692016	128692016	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183659426	183659426	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78380201	78380201	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102270053	102270053	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10J3	441911	broad.mit.edu	37	1	159284105	159284105	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450126	158450126	+	Silent	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14J1	442191	broad.mit.edu	37	6	29274621	29274621	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247615290	247615290	+	5'Flank	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B11	127623	broad.mit.edu	37	1	247618034	247618034	+	5'Flank	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695823	247695823	+	5'UTR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2D2	120776	broad.mit.edu	37	11	6913634	6913634	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138311	248138311	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367276	248367276	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367278	248367278	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308513	248308513	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2S2	56656	broad.mit.edu	37	9	35957691	35957691	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525230	248525230	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C11	219429	broad.mit.edu	37	11	55371098	55371098	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340087	55340087	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55340430	55340430	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56232771	56232771	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20444116	20444116	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612688	20612688	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52A1	23538	broad.mit.edu	37	11	5173456	5173456	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A3	390083	broad.mit.edu	37	11	5969402	5969402	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B4	196335	broad.mit.edu	37	11	6129094	6129094	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AS1	219447	broad.mit.edu	37	11	55797859	55797860	+	5'Flank	DNP	CT	AG	AG			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D14	219436	broad.mit.edu	37	11	55563784	55563784	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5D16	390144	broad.mit.edu	37	11	55606690	55606690	+	Missense_Mutation	SNP	G	T	T	rs143345816		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K1	26339	broad.mit.edu	37	3	98189145	98189145	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579086	55579086	+	Silent	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5T2	219464	broad.mit.edu	37	11	55999935	55999935	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C6	283365	broad.mit.edu	37	12	55688318	55688318	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6W1P	89883	broad.mit.edu	37	7	142759700	142759700	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6W1P	89883	broad.mit.edu	37	7	142760166	142760166	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56127956	56127956	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117089991	117089991	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD4	54726	broad.mit.edu	37	4	146071687	146071687	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29614890	29614890	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXA1L	5018	broad.mit.edu	37	14	23239424	23239424	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RY10	27334	broad.mit.edu	37	X	78216603	78216603	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90691132	90691132	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI1	29943	broad.mit.edu	37	1	17563697	17563697	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110406155	110406155	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176787750	176787750	+	Intron	DEL	T	-	-	rs76916298		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118982132	118982132	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206265804	206265804	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51130443	51130443	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150839315	150839315	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31822128	31822129	+	Intron	DNP	CC	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	100803131	100803131	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58299106	58299106	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH7	5099	broad.mit.edu	37	4	30880087	30880087	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215843	140215843	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140581476	140581476	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140530959	140530959	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA12	26025	broad.mit.edu	37	5	140810506	140810506	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140779113	140779113	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK1	5105	broad.mit.edu	37	20	56138808	56138808	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82508748	82508748	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD1	115294	broad.mit.edu	37	8	52733063	52733063	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD1LG2	80380	broad.mit.edu	37	9	5563037	5563037	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	145002425	145002426	+	Intron	INS	-	A	A	rs147987741		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4D	5144	broad.mit.edu	37	5	59093401	59093401	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE7B	27115	broad.mit.edu	37	6	136429774	136429774	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK1	5163	broad.mit.edu	37	2	173423610	173423610	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39839659	39839659	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31677996	31677996	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57328692	57328692	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	98078430	98078430	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58318094	58318094	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHGDH	26227	broad.mit.edu	37	1	120277957	120277957	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75737719	75737719	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS2	9063	broad.mit.edu	37	18	44416466	44416467	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98469658	98469658	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39609346	39609346	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIKFYVE	200576	broad.mit.edu	37	2	209204748	209204748	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110455413	110455413	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125255525	125255525	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2R1	22925	broad.mit.edu	37	2	160833972	160833972	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8702923	8702923	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8769323	8769323	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD4	84812	broad.mit.edu	37	2	219487513	219487513	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK2	26499	broad.mit.edu	37	14	67859275	67859275	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110505	132110505	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161157864	161157864	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLS3	5358	broad.mit.edu	37	X	114879350	114879350	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208212854	208212854	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118200839	118200839	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133250242	133250242	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38138608	38138608	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38143960	38143960	+	Splice_Site	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F2	5452	broad.mit.edu	37	19	42625874	42625874	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU4F2	5458	broad.mit.edu	37	4	147560954	147560954	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAN-P2RY11	692312	broad.mit.edu	37	19	10221355	10221355	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76805951	76805951	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIP5K1	9677	broad.mit.edu	37	15	43831727	43831727	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160474254	160474254	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12C	54776	broad.mit.edu	37	19	55614842	55614842	+	Silent	SNP	C	A	A	rs144418099	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PQBP1	10084	broad.mit.edu	37	X	48755810	48755810	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF12	390999	broad.mit.edu	37	1	12835857	12835857	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45245683	45245683	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45246307	45246307	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522335	23522335	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522908	23522908	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG3	53632	broad.mit.edu	37	2	219695018	219695018	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64683064	64683064	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3677720	3677720	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR16	51334	broad.mit.edu	37	5	120022087	120022087	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA8	143471	broad.mit.edu	37	18	23750795	23750795	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPH	5723	broad.mit.edu	37	7	56085062	56085062	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48166809	48166809	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTHLH	5744	broad.mit.edu	37	12	28116330	28116330	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214560235	214560235	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN14	5784	broad.mit.edu	37	1	214656672	214656672	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	71029628	71029628	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8500934	8500934	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55715197	55715197	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	157931198	157931198	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRN2	5799	broad.mit.edu	37	7	158308793	158308793	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40748375	40748375	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40877394	40877394	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41409594	41409594	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121657831	121657831	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52366079	52366079	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9349784	9349784	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB30	27314	broad.mit.edu	37	11	82698677	82698677	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3B	5865	broad.mit.edu	37	1	52426729	52426729	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABEP1	9135	broad.mit.edu	37	17	5250110	5250110	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L3	5892	broad.mit.edu	37	17	33433113	33433113	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20563841	20563841	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASL12	51285	broad.mit.edu	37	15	65347321	65347321	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF6	166824	broad.mit.edu	37	4	74451106	74451106	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF9	9182	broad.mit.edu	37	12	86198702	86198702	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAX	30062	broad.mit.edu	37	18	56936220	56936220	+	3'UTR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49039354	49039354	+	Nonsense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM47	54502	broad.mit.edu	37	4	40440354	40440354	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173933262	173933262	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN3	57333	broad.mit.edu	37	19	50040313	50040313	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1A	5967	broad.mit.edu	37	2	79349191	79349191	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79386643	79386643	+	5'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103270350	103270350	+	Intron	SNP	G	T	T	rs6977502		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103270352	103270352	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198508925	198508925	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3270426	3270426	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108487652	108487652	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163044230	163044230	+	Silent	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104664363	104664363	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105001565	105001565	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40695613	40695613	+	5'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF128	79589	broad.mit.edu	37	X	106016175	106016175	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174566	79174566	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79174569	79174569	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	79638887	79638887	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1	54763	broad.mit.edu	37	3	123699418	123699418	+	Translation_Start_Site	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10467120	10467120	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10480614	10480614	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP2	6102	broad.mit.edu	37	X	46713306	46713306	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPF2	84154	broad.mit.edu	37	6	111318525	111318525	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL13AP3	645683	broad.mit.edu	37	14	56233451	56233451	+	RNA	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	2002894	2002894	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	167241813	167241813	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67732961	67732961	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12121416	12121416	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL1	8607	broad.mit.edu	37	3	127820308	127820308	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRA	6256	broad.mit.edu	37	9	137328357	137328357	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165376126	165376126	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38993629	38993629	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39058311	39058312	+	Intron	DNP	GG	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237777471	237777471	+	Silent	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237841363	237841363	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237947190	237947190	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33927798	33927798	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33961598	33961598	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92735075	92735075	+	Silent	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARS	6301	broad.mit.edu	37	1	109766604	109766604	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART3	9733	broad.mit.edu	37	12	108929120	108929120	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1C1	147199	broad.mit.edu	37	11	193923	193923	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167262666	167262666	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167168245	167168245	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35208754	35208754	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4014040	4014040	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12203072	12203077	+	In_Frame_Del	DEL	ATTCTT	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83590815	83590815	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4F	10505	broad.mit.edu	37	2	74900622	74900622	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5B	54437	broad.mit.edu	37	3	122711922	122711922	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPSECS	51091	broad.mit.edu	37	4	25128906	25128906	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT6	23157	broad.mit.edu	37	X	118774740	118774740	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61377399	61377399	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB12	89777	broad.mit.edu	37	18	61226775	61226775	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61558715	61558715	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42531910	42531910	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFMBT2	57713	broad.mit.edu	37	10	7212789	7212789	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS11	9295	broad.mit.edu	37	1	70700421	70700421	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS12IP1	285672	broad.mit.edu	37	5	64020382	64020382	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85892392	85892392	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCZ	137868	broad.mit.edu	37	8	13959885	13959885	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGPL1	8879	broad.mit.edu	37	10	72576471	72576471	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146264813	146264813	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3675261	3675261	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51961204	51961204	+	Silent	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232564191	232564191	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPA	140885	broad.mit.edu	37	20	1917913	1917913	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164786840	164786840	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	26883590	26883590	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36184065	36184065	+	Silent	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAMF6	114836	broad.mit.edu	37	1	160460196	160460196	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44682365	44682365	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A1	6563	broad.mit.edu	37	18	43314234	43314234	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99379165	99379165	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC20A1	6574	broad.mit.edu	37	2	113417209	113417209	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A13	9390	broad.mit.edu	37	3	38316907	38316907	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110777820	110777820	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19496351	19496351	+	Intron	SNP	G	C	C	rs148791836	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A36	55186	broad.mit.edu	37	3	140678316	140678316	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92352396	92352396	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85467054	85467054	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58063605	58063605	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A13	91252	broad.mit.edu	37	11	47397159	47397159	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A1	6519	broad.mit.edu	37	2	44513056	44513056	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC40A1	30061	broad.mit.edu	37	2	190430409	190430409	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A1	254428	broad.mit.edu	37	1	205767264	205767264	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75707654	75707654	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75805240	75805240	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19458919	19458919	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A7	60482	broad.mit.edu	37	2	108614427	108614427	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A8	160728	broad.mit.edu	37	12	101577935	101577935	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85279821	85279821	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55726005	55726005	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20629090	20629090	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A6	9057	broad.mit.edu	37	16	68325349	68325349	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40366585	40366585	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143236997	143236997	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20530698	20530698	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20619254	20619254	+	Silent	SNP	G	T	T	rs147958857		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK5	26050	broad.mit.edu	37	13	88328537	88328537	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLK	9748	broad.mit.edu	37	10	105767963	105767963	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLPI	6590	broad.mit.edu	37	20	43880953	43880953	+	3'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLTM	79811	broad.mit.edu	37	15	59179173	59179173	+	Splice_Site	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAP1	60682	broad.mit.edu	37	6	71569798	71569798	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130911008	130911008	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246078796	246078796	+	Intron	SNP	C	A	A	rs115624121	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP25	6616	broad.mit.edu	37	20	10279989	10279989	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-1	100033413	broad.mit.edu	37	15	25294015	25294015	+	5'Flank	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP40	9410	broad.mit.edu	37	1	31762255	31762255	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOCS7	30837	broad.mit.edu	37	17	36521316	36521316	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108431188	108431188	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106562360	106562360	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106865402	106865402	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121495780	121495780	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX6	55553	broad.mit.edu	37	11	16340026	16340026	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214727368	214727368	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142596806	142596806	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPHKAP	80309	broad.mit.edu	37	2	228881496	228881496	+	Silent	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147481425	147481425	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2D	6703	broad.mit.edu	37	1	153012669	153012669	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55653182	55653182	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTAN1	6709	broad.mit.edu	37	9	131374332	131374332	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41012243	41012243	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30747574	30747574	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149489266	149489266	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL2	6483	broad.mit.edu	37	16	70415730	70415730	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA1	6489	broad.mit.edu	37	12	22439579	22439579	+	Intron	DEL	C	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40481576	40481576	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT6	6778	broad.mit.edu	37	12	57498342	57498342	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP3	55240	broad.mit.edu	37	2	120003651	120003651	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63970784	63970784	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK10	6793	broad.mit.edu	37	5	171520360	171520360	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX17	55014	broad.mit.edu	37	9	102691003	102691003	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX18	53407	broad.mit.edu	37	4	4508991	4508991	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1B	112755	broad.mit.edu	37	16	31004829	31004829	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1A1	6817	broad.mit.edu	37	16	28619881	28619881	+	Silent	SNP	A	G	G	rs146871724		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108871922	108871922	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4403778	4403778	+	3'UTR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUSD4	55061	broad.mit.edu	37	1	223396608	223396608	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75609966	75609966	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12209921	12209921	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12231936	12231936	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANK	10010	broad.mit.edu	37	2	162087711	162087711	+	Silent	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS1R1	80835	broad.mit.edu	37	1	6631383	6631383	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D1	23216	broad.mit.edu	37	4	38091856	38091856	+	Intron	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17413737	17413737	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10	6953	broad.mit.edu	37	6	167791570	167791570	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT1	83659	broad.mit.edu	37	17	6722663	6722663	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30704309	30704309	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX9	374618	broad.mit.edu	37	15	56704371	56704372	+	Intron	INS	-	GT	GT	rs137938599	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100228509	100228509	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2411253	2411254	+	Intron	DNP	TC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134128756	134128756	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS4	7060	broad.mit.edu	37	5	79366218	79366218	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THPO	7066	broad.mit.edu	37	3	184094268	184094268	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138378217	138378217	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43770805	43770805	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43779623	43779623	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153539221	153539221	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82337870	82337870	+	Intron	DEL	A	-	-	rs113916919	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167012460	167012460	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98144565	98144565	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98188363	98188363	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF1	10548	broad.mit.edu	37	14	24664328	24664328	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM130	222865	broad.mit.edu	37	7	98449144	98449144	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM194A	23306	broad.mit.edu	37	12	57458497	57458497	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM200A	114801	broad.mit.edu	37	6	130761629	130761629	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100287930	100287930	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM47	83604	broad.mit.edu	37	X	34657371	34657371	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101276134	101276134	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC4	84899	broad.mit.edu	37	13	101286899	101286899	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX2	51075	broad.mit.edu	37	11	57505860	57505860	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIP1	10318	broad.mit.edu	37	5	150416337	150416337	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175360364	175360364	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218673558	218673558	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47467858	47467858	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578205	7578205	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1488506	1488506	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10908932	10908932	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909714	10909714	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10942868	10942868	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72712819	72712819	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM29	23650	broad.mit.edu	37	11	120008093	120008093	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM36	55521	broad.mit.edu	37	5	114513322	114513322	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039404	248039404	+	Nonsense_Mutation	SNP	G	A	A	rs142321693	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML2	205860	broad.mit.edu	37	4	189026187	189026187	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77353447	77353447	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234854450	234854450	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142572354	142572354	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130356376	130356376	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51889330	51889330	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147755028	147755028	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338823	89338823	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84373083	84373083	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179575439	179575439	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179581898	179581898	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179596851	179596851	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3E	112714	broad.mit.edu	37	2	130951699	130951699	+	Missense_Mutation	SNP	G	C	C	rs148691540		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB8	347688	broad.mit.edu	37	10	94670	94670	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP1	7287	broad.mit.edu	37	6	35477040	35477040	+	Silent	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC16	57544	broad.mit.edu	37	14	53010265	53010265	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYMS	7298	broad.mit.edu	37	18	669136	669136	+	Silent	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UACA	55075	broad.mit.edu	37	15	70979844	70979844	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404566	34404566	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN10	127733	broad.mit.edu	37	1	20517886	20517886	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69693248	69693248	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17728601	17728601	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF2	26019	broad.mit.edu	37	10	11971905	11971905	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC2	7385	broad.mit.edu	37	16	21974016	21974016	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	215987217	215987217	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216595739	216595739	+	5'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55567424	55567424	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55642015	55642015	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55642017	55642017	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP31	57478	broad.mit.edu	37	16	23093964	23093964	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP6NL	9712	broad.mit.edu	37	10	11505366	11505366	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9Y	8287	broad.mit.edu	37	Y	14959240	14959240	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UST	10090	broad.mit.edu	37	6	149208153	149208153	+	Silent	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52603472	52603472	+	Frame_Shift_Del	DEL	A	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	11409088	11409088	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	17619489	17619489	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	2899264	2899264	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42654217	42654217	+	IGR	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47595478	47595478	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	90899137	90899137	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	123811317	123811317	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124086191	124086191	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43543696	43543696	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280048	56280048	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56693717	56693717	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89466244	89466244	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848894	90848894	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	9627654	9627654	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98435882	98435882	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	106401653	106401653	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119632693	119632693	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	20094877	20094877	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30980845	30980845	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31407250	31407250	+	IGR	SNP	C	A	A	rs75041725	byFrequency;by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33164942	33164942	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34455188	34455188	+	IGR	SNP	G	T	T	rs143391964	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34456127	34456127	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34459946	34459946	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8169746	8169746	+	IGR	DEL	C	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22886814	22886814	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	42943434	42943434	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48708547	48708547	+	IGR	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53802011	53802011	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65532306	65532306	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	67841491	67841491	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	97536137	97536137	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806992	19806992	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148189	20148189	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20228098	20228098	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25901147	25901147	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	26729169	26729169	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29142685	29142686	+	IGR	INS	-	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39197432	39197432	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	39577879	39577879	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	68201890	68201890	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	71360867	71360867	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82129183	82129183	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88065047	88065047	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97758823	97758823	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97831870	97831870	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98496135	98496135	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20213504	20213504	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22483205	22483205	+	IGR	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79852637	79852637	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88301249	88301249	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	88820534	88820534	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	98957056	98957056	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10935245	10935245	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20113899	20113899	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399622	32399622	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32490215	32490215	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32626739	32626739	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32951186	32951186	+	IGR	SNP	A	G	G	rs141463611	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33371517	33371517	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33371690	33371690	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33513596	33513596	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605395	33605395	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33984603	33984603	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	46391693	46391693	+	IGR	SNP	C	A	A	rs59891909		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	58811211	58811211	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	63214603	63214603	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76269185	76269185	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82554560	82554560	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	13709039	13709040	+	IGR	INS	-	AGGA	AGGA	rs12938908		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	22011809	22011809	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39258418	39258418	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52555217	52555217	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	53628537	53628537	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	68914310	68914310	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69080400	69080400	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	72557278	72557278	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13919783	13919783	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	15179248	15179248	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	18699301	18699301	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26232465	26232465	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57638218	57638218	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75148586	75148587	+	IGR	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28637018	28637018	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31715082	31715082	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35024385	35024385	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37550480	37550480	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	44917497	44917497	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55209522	55209522	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	57662375	57662375	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	7731275	7731275	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	12900088	12900088	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146585234	146585234	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	146585236	146585236	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152455701	152455701	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152710150	152710150	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153488530	153488530	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157151349	157151349	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157609818	157609818	+	IGR	SNP	T	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	161376386	161376386	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168419568	168419568	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170338587	170338587	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170338871	170338871	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	171639878	171639878	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175014215	175014215	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175290582	175290582	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177415067	177415068	+	IGR	INS	-	AA	AA	rs151037513	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177869991	177869991	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	203488455	203488455	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	213584167	213584167	+	IGR	DEL	T	-	-	rs113890422		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222435351	222435352	+	IGR	INS	-	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	225063695	225063695	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	23571662	23571662	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247347803	247347803	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29671796	29671796	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37120341	37120341	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87250716	87250716	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96093347	96093347	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96856382	96856382	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913551	96913551	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361851	12361851	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21673814	21673814	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	22410725	22410725	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29597362	29597362	+	IGR	SNP	T	C	C	rs144570126	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29602180	29602180	+	IGR	DEL	T	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	34341473	34341473	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862508	10862508	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10863034	10863034	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10898994	10898994	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14916770	14916770	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21270974	21270974	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24474139	24474140	+	IGR	DNP	GG	TT	TT			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9417243	9417243	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21425381	21425381	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106105635	106105635	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106552478	106552478	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107314115	107314115	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131003690	131003690	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570820	168570820	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	192428428	192428429	+	IGR	DNP	GG	TA	TA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21630215	21630215	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	21884497	21884497	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	228689271	228689271	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23218027	23218027	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23425637	23425637	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	2650681	2650681	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34108393	34108394	+	IGR	INS	-	A	A	rs148193954	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	72046420	72046420	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91791068	91791068	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92145507	92145507	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96769029	96769029	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97712478	97712479	+	IGR	DNP	CT	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116365243	116365243	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	122380402	122380402	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148473038	148473038	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148703776	148703776	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149700417	149700417	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	167140415	167140415	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180042861	180042861	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18580461	18580461	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18877330	18877330	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190097974	190097987	+	IGR	DEL	TTCTTCCTTCCCTC	-	-	rs36116975	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	54082369	54082369	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80435929	80435929	+	IGR	SNP	T	G	G	rs150188137	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97957366	97957366	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	110268347	110268347	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11824951	11824951	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134630426	134630426	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18252664	18252664	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190637242	190637242	+	IGR	SNP	T	C	C	rs112806214		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012675	33012676	+	IGR	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43589689	43589689	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70223819	70223819	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	96631567	96631567	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107061937	107061937	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	109510990	109510990	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110319515	110319515	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	114726918	114726918	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165303787	165303787	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170793227	170793227	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170955302	170955302	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172402695	172402695	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	18049586	18049586	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20305339	20305339	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910467	25910467	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2889086	2889086	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	2889095	2889095	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	5683803	5683803	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	63256250	63256250	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	7296250	7296250	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75217352	75217352	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	77081004	77081004	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97106825	97106825	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	9958815	9958815	+	IGR	DEL	A	-	-	rs71613336		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	100498183	100498183	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	11862320	11862320	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	23652516	23652516	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3177538	3177538	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	40725672	40725672	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4703223	4703223	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56297797	56297797	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57583336	57583336	+	IGR	DEL	C	-	-	rs113081163		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58576423	58576423	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58585719	58585719	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	91104581	91104581	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143815923	143815923	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143827193	143827193	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	159025874	159025874	+	IGR	SNP	C	A	A	rs146152757	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	16625539	16625539	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27369007	27369007	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	36086995	36086995	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52407822	52407822	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53236339	53236339	+	IGR	SNP	G	A	A	rs150317583	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56905859	56905862	+	IGR	DEL	TTCT	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57215743	57215743	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910135	62910135	+	IGR	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62910137	62910137	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63028345	63028345	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036160	63036160	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67052795	67052795	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	67816416	67816417	+	IGR	DEL	TC	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76931728	76931729	+	IGR	INS	-	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613719	84613719	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11891913	11891913	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	131601584	131601584	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134675164	134675164	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137094914	137094914	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137146232	137146232	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138710170	138710170	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47014556	47014556	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78612367	78612367	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	84455726	84455726	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94658609	94658609	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	117609701	117609701	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120279855	120279855	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	136080395	136080395	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	16317288	16317288	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21696151	21696151	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29291576	29291576	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44170469	44170469	+	IGR	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45362669	45362669	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68472929	68472929	+	IGR	SNP	A	G	G	rs144837008	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	74259425	74259425	+	IGR	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	80793275	80793275	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81871623	81871623	+	IGR	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90484732	90484732	+	IGR	SNP	A	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261858	127261858	+	IGR	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	25047780	25047780	+	IGR	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43138549	43138549	+	IGR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55110993	55110993	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79817169	79817169	+	IGR	DEL	C	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92479558	92479558	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13842747	13842747	+	IGR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14089063	14089063	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14090022	14090022	+	IGR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	5661589	5661589	+	IGR	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77850897	77850897	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6853879	6853879	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136637201	136637201	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77896160	77896160	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIPAR	63894	broad.mit.edu	37	14	77915816	77915816	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12302700	12302700	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK1	7443	broad.mit.edu	37	14	97304098	97304098	+	Splice_Site	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98828373	98828373	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39279780	39279780	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR59	79726	broad.mit.edu	37	16	74956075	74956075	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37682620	37682622	+	Intron	DEL	GTT	-	-	rs34767080		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR92	116143	broad.mit.edu	37	2	68358622	68358622	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC5	149708	broad.mit.edu	37	20	43743611	43743611	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT3A	89780	broad.mit.edu	37	1	228247951	228247951	+	3'UTR	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRN	7486	broad.mit.edu	37	8	30999160	30999160	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108618696	108618696	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168102985	168102985	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73062373	73062373	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR3	150165	broad.mit.edu	37	22	17280990	17280990	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142066056	142066056	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142090172	142090172	+	Splice_Site	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21367514	21367514	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YY2	404281	broad.mit.edu	37	X	21874864	21874864	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAK	51776	broad.mit.edu	37	2	174086040	174086040	+	Intron	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB3	79842	broad.mit.edu	37	11	62520433	62520433	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB40	9923	broad.mit.edu	37	1	22837825	22837825	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111624806	111624807	+	Intron	INS	-	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145268432	145268432	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAT	57623	broad.mit.edu	37	8	135533236	135533236	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77616393	77616393	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP37	7539	broad.mit.edu	37	9	115806359	115806359	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32403524	32403524	+	Intron	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND11	10771	broad.mit.edu	37	10	226021	226021	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF124	7678	broad.mit.edu	37	1	247319842	247319842	+	3'UTR	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58574983	58574983	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28053589	28053589	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF283	284349	broad.mit.edu	37	19	44352078	44352078	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF333	84449	broad.mit.edu	37	19	14827055	14827055	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53652730	53652730	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF384	171017	broad.mit.edu	37	12	6788225	6788225	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF408	79797	broad.mit.edu	37	11	46722524	46722524	+	Translation_Start_Site	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF430	80264	broad.mit.edu	37	19	21240857	21240857	+	3'UTR	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF438	220929	broad.mit.edu	37	10	31134132	31134132	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188854	57188854	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38283113	38283113	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF577	84765	broad.mit.edu	37	19	52361469	52361469	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF618	114991	broad.mit.edu	37	9	116731397	116731397	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53945337	53945337	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF814	730051	broad.mit.edu	37	19	58384768	58384768	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF841	284371	broad.mit.edu	37	19	52580094	52580094	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	217795	217795	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	248209	248209	+	RNA	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22574465	22574465	+	Silent	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56833165	56833165	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58119990	58119990	+	Intron	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30953441	30953441	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	2041888	2041889	+	Intron	INS	-	G	G	rs144077843	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24737152	24737152	+	5'Flank	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	59004645	59004645	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22219196	22219196	+	Intron	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22482402	22482402	+	Intron	SNP	C	A	A	rs149684793	by1000genomes	TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22564576	22564576	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22573895	22573895	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28138311	28138311	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28733910	28733910	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25485057	25485057	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	33446150	33446150	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62544249	62544249	+	5'Flank	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	74355455	74355455	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34739741	34739741	+	RNA	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	88620274	88620274	+	Missense_Mutation	SNP	G	A	A	rs151239819		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20688655	20688655	+	5'Flank	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20867757	20867758	+	Intron	INS	-	CG	CG	rs56336832		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21731248	21731248	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	37188333	37188334	+	RNA	INS	-	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40041379	40041379	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	155585434	155585434	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	205835991	205835992	+	Intron	INS	-	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133066862	133066862	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89471916	89471916	+	Intron	SNP	G	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044210	90044210	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90091440	90091440	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96608616	96608616	+	Intron	SNP	C	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180491420	180491420	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18062092	18062092	+	Intron	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95374199	95374199	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135249461	135249461	+	5'Flank	SNP	G	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	185999470	185999470	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190855210	190855210	+	Intron	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12673826	12673826	+	Intron	DEL	G	-	-			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	134493294	134493294	+	Intron	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	52013559	52013559	+	5'Flank	SNP	A	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100551374	100551374	+	RNA	SNP	T	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124673931	124673931	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142012983	142012983	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142021269	142021269	+	Intron	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142144097	142144097	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57698525	57698525	+	5'Flank	SNP	C	G	G			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65228376	65228376	+	Intron	SNP	A	T	T			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	96251856	96251856	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73157129	73157129	+	Silent	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66460027	66460027	+	5'Flank	DEL	T	-	-	rs112286776		TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66460070	66460070	+	5'Flank	SNP	T	C	C			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	69634638	69634638	+	RNA	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746218	90746218	+	Silent	SNP	G	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90748552	90748553	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150995	51150995	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z042-01A-01W-0746-08	TCGA-17-Z042-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
