Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ACAD10	80724	broad.mit.edu	37	12	112174907	112174907	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70924778	70924778	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM21	8747	broad.mit.edu	37	14	70924778	70924778	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106234219	106234219	+	Intron	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAP1	11033	broad.mit.edu	37	7	944586	944589	+	Intron	DEL	GGGC	-	-	rs112697144		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY9	115	broad.mit.edu	37	16	4163684	4163684	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	957721	957721	+	Silent	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105412632	105412632	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4771897	4771897	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2CR4	65062	broad.mit.edu	37	2	202492884	202492885	+	Intron	DEL	AA	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD3	272	broad.mit.edu	37	11	10500152	10500153	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMT	275	broad.mit.edu	37	3	49455132	49455133	+	Frame_Shift_Ins	INS	-	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241451413	241451413	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155932776	155932776	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155932776	155932776	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46246594	46246594	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAH1	427	broad.mit.edu	37	8	17920960	17920960	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10401606	10401606	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10401606	10401606	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI2	576	broad.mit.edu	37	1	32207725	32207725	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70837459	70837459	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70837459	70837459	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP5	653	broad.mit.edu	37	6	55623986	55623995	+	Intron	DEL	AAGAAAAAAT	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP8B	656	broad.mit.edu	37	1	40226045	40226045	+	3'UTR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100604833	100604833	+	3'UTR	SNP	G	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTK	695	broad.mit.edu	37	X	100604833	100604833	+	3'UTR	SNP	G	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98742267	98742267	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf12	26148	broad.mit.edu	37	10	98742267	98742267	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf30	56946	broad.mit.edu	37	11	76157923	76157923	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922679	24922679	+	Silent	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf58	64755	broad.mit.edu	37	16	31502203	31502203	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1RL	51279	broad.mit.edu	37	12	7249880	7249880	+	Intron	DEL	T	-	-	rs71743195		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20322542	20322542	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20322542	20322542	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf45	54069	broad.mit.edu	37	21	33651369	33651370	+	5'UTR	INS	-	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241531406	241531406	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116268202	116268202	+	Intron	DEL	G	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC62	84660	broad.mit.edu	37	12	123311052	123311052	+	3'UTR	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL25	6370	broad.mit.edu	37	19	8122905	8122905	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT4	10575	broad.mit.edu	37	2	62104098	62104098	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT4	10575	broad.mit.edu	37	2	62104098	62104098	+	Missense_Mutation	SNP	T	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37619172	37619172	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37619172	37619172	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50796933	50796933	+	Intron	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL1	8814	broad.mit.edu	37	14	50796933	50796933	+	Intron	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11047331	11047331	+	5'UTR	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF2	10659	broad.mit.edu	37	10	11047331	11047331	+	5'UTR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFB	629	broad.mit.edu	37	6	31915875	31915892	+	Intron	DEL	CCTGAACTCGGGGGAATG	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46799939	46799939	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46799939	46799939	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170601015	170601054	+	Intron	DEL	GGGAGACCGTGGAAGGCGGGAGTCGGAGACGAGGGAGAGG	-	-	rs66819520	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	7001225	7001236	+	Intron	DEL	ACACACACACGC	-	-	rs149134084		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70704789	70704789	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	107013191	107013191	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG5	10466	broad.mit.edu	37	7	107013191	107013191	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COG7	91949	broad.mit.edu	37	16	23453655	23453655	+	Intron	DEL	A	-	-	rs71790019		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPEB3	22849	broad.mit.edu	37	10	93851587	93851587	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207870819	207870819	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207870819	207870819	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43893771	43893776	+	Intron	DEL	CTGCCT	-	-	rs10585044		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNB1	1499	broad.mit.edu	37	3	41268677	41268678	+	Intron	DEL	AT	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17110578	17110578	+	Intron	DEL	A	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43184061	43184061	+	Silent	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29977126	29977126	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB119	245932	broad.mit.edu	37	20	29977126	29977126	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL4	54567	broad.mit.edu	37	15	41224584	41224584	+	Silent	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124399784	124399786	+	In_Frame_Del	DEL	TCC	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124399784	124399786	+	In_Frame_Del	DEL	TCC	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996932	20996932	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996932	20996932	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196664038	196664038	+	Silent	SNP	T	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196664038	196664038	+	Silent	SNP	T	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L1	1774	broad.mit.edu	37	X	153631085	153631087	+	In_Frame_Del	DEL	AGC	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOM3Z	1797	broad.mit.edu	37	6	31938643	31938643	+	Intron	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYTN	391475	broad.mit.edu	37	2	207559647	207559647	+	Intron	DEL	A	-	-	rs113437883		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP2	2013	broad.mit.edu	37	16	10631618	10631619	+	Intron	DEL	CA	-	-	rs34790340		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC1	51013	broad.mit.edu	37	10	99201066	99201066	+	Intron	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175533629	175533629	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175533629	175533629	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM166B	730112	broad.mit.edu	37	9	35563755	35563755	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A4	151647	broad.mit.edu	37	3	68802078	68802078	+	Silent	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A4	151647	broad.mit.edu	37	3	68802078	68802078	+	Silent	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028695	37028695	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250665	190250665	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250665	190250665	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10088407	10088410	+	Splice_Site	DEL	AGTA	-	-	rs146316187		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO30	84085	broad.mit.edu	37	6	146126568	146126568	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO30	84085	broad.mit.edu	37	6	146126568	146126568	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89082293	89082294	+	Intron	INS	-	ATTT	ATTT			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43859	389761	broad.mit.edu	37	9	84547475	84547475	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12725042	12725042	+	Intron	DEL	C	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD3	5349	broad.mit.edu	37	19	35614273	35614274	+	Intron	DEL	TG	-	-	rs113577293	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8106012	8106012	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA3	2625	broad.mit.edu	37	10	8106012	8106012	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154311863	154311863	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154311863	154311863	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT1	2678	broad.mit.edu	37	22	25010819	25010819	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT1	2678	broad.mit.edu	37	22	25010819	25010819	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIF	2694	broad.mit.edu	37	11	59603165	59603165	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6B	2824	broad.mit.edu	37	X	13825830	13825830	+	Intron	SNP	C	G	G	rs150832725	byFrequency	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6B	2824	broad.mit.edu	37	X	13825830	13825830	+	Intron	SNP	C	G	G	rs150832725	byFrequency	TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1A	57655	broad.mit.edu	37	19	35510228	35510229	+	Intron	INS	-	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858028	9858028	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9858028	9858028	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C3	9330	broad.mit.edu	37	2	197643855	197643855	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY1	23462	broad.mit.edu	37	8	80677881	80677881	+	Nonsense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA2	11148	broad.mit.edu	37	3	108076844	108076844	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HK3	3101	broad.mit.edu	37	5	176318466	176318466	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER1	9456	broad.mit.edu	37	5	78671727	78671728	+	3'UTR	INS	-	T	T	rs71763510		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER3	9454	broad.mit.edu	37	19	19043862	19043862	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER3	9454	broad.mit.edu	37	19	19043862	19043862	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172847	78172847	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1B	3351	broad.mit.edu	37	6	78172847	78172847	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53652829	53652852	+	Intron	DEL	GCCGGGGCCGGGGCCGGGGCCGGT	-	-	rs78801842	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102632562	102632563	+	Intron	DEL	AC	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCC	55721	broad.mit.edu	37	1	32672097	32672099	+	Intron	DEL	TCT	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCC	55721	broad.mit.edu	37	1	32672097	32672099	+	Intron	DEL	TCT	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75888773	75888773	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA6	3655	broad.mit.edu	37	2	173352615	173352615	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15697389	15697389	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15697389	15697389	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31429895	31429895	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187541828	187541828	+	Intron	SNP	A	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH4	3700	broad.mit.edu	37	3	52858762	52858762	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JHDM1D	80853	broad.mit.edu	37	7	139791810	139791810	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JHDM1D	80853	broad.mit.edu	37	7	139791810	139791810	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL1	84056	broad.mit.edu	37	13	30829758	30829758	+	Intron	DEL	A	-	-	rs36018519		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM6B	23135	broad.mit.edu	37	17	7750154	7750155	+	Frame_Shift_Ins	INS	-	C	C	rs147915741	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF11	8462	broad.mit.edu	37	2	10187765	10187765	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF5	688	broad.mit.edu	37	13	73637032	73637032	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6311632	6311632	+	5'UTR	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6311632	6311632	+	5'UTR	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129691179	129691179	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129691179	129691179	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCA5L	150082	broad.mit.edu	37	21	40778294	40778294	+	Silent	SNP	G	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCA5L	150082	broad.mit.edu	37	21	40778294	40778294	+	Silent	SNP	G	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756945	54756945	+	Intron	DEL	A	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75115013	75115013	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1L	79748	broad.mit.edu	37	15	75115013	75115013	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148004975	148004975	+	Intron	SNP	A	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC374491	374491	broad.mit.edu	37	13	25169014	25169015	+	Intron	INS	-	TAG	TAG			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653786	653786	broad.mit.edu	37	16	22588132	22588132	+	3'UTR	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100174663	100174663	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH4	4034	broad.mit.edu	37	7	100174663	100174663	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133943059	133943059	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133943059	133943059	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141072616	141072616	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141072616	141072616	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23890563	23890564	+	Frame_Shift_Ins	INS	-	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGOH	4116	broad.mit.edu	37	1	53699330	53699330	+	Intron	SNP	C	T	T	rs112792686		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGOH	4116	broad.mit.edu	37	1	53699330	53699330	+	Intron	SNP	C	T	T	rs112792686		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91449666	91449666	+	Silent	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91449666	91449666	+	Silent	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12032655	12032655	+	Intron	SNP	A	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12032655	12032655	+	Intron	SNP	A	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K13	9175	broad.mit.edu	37	3	185167520	185167520	+	Intron	DEL	T	-	-	rs143693710		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL1	64780	broad.mit.edu	37	6	109769320	109769336	+	Intron	DEL	CCGCCTTCTCCCTCTGT	-	-	rs149983544	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP3	4314	broad.mit.edu	37	11	102712760	102712760	+	Intron	SNP	T	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1	4485	broad.mit.edu	37	3	49723322	49723327	+	In_Frame_Del	DEL	GCGCTG	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56573109	56573109	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56573109	56573109	+	Missense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532564	100532564	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTTP	4547	broad.mit.edu	37	4	100532564	100532564	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77818100	77818101	+	Intron	INS	-	A	A	rs35429706		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL2	4633	broad.mit.edu	37	12	111352074	111352074	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76922837	76922837	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76922837	76922837	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOZ3	91977	broad.mit.edu	37	5	150052109	150052110	+	Intron	INS	-	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAIF1	203245	broad.mit.edu	37	9	130829073	130829073	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145311493	145311493	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG	64151	broad.mit.edu	37	4	17841869	17841870	+	Intron	INS	-	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC3L	64318	broad.mit.edu	37	10	96108989	96108989	+	Intron	DEL	A	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6610657	6610657	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC2	10577	broad.mit.edu	37	14	74947113	74947113	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206628556	206628556	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228404762	228404762	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGT	8473	broad.mit.edu	37	X	70767677	70767677	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9204692	9204692	+	Missense_Mutation	SNP	G	A	A	rs144608760		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9204692	9204692	+	Missense_Mutation	SNP	G	A	A	rs144608760		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364346	5364346	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364346	5364346	+	Missense_Mutation	SNP	T	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125618710	125618711	+	3'UTR	DEL	CA	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223066081	223066081	+	3'UTR	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX3	5077	broad.mit.edu	37	2	223066081	223066081	+	3'UTR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX2	5089	broad.mit.edu	37	6	32155055	32155056	+	Frame_Shift_Ins	INS	-	G	G	rs143029272	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA11	56105	broad.mit.edu	37	5	140801620	140801620	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA11	56105	broad.mit.edu	37	5	140801620	140801620	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PC	5091	broad.mit.edu	37	11	66620320	66620320	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDC	5132	broad.mit.edu	37	1	186413131	186413131	+	Nonsense_Mutation	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33225967	33225967	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60625776	60625776	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP1	23239	broad.mit.edu	37	18	60625776	60625776	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204410669	204410669	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204410669	204410669	+	Missense_Mutation	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIR	8544	broad.mit.edu	37	X	15443983	15443983	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4C	8605	broad.mit.edu	37	19	48607875	48607875	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC4	191585	broad.mit.edu	37	21	42551313	42551313	+	Frame_Shift_Del	DEL	C	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB1	5364	broad.mit.edu	37	3	48454628	48454628	+	Intron	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3D	661	broad.mit.edu	37	8	22102609	22102609	+	5'Flank	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81732820	81732820	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R10	5514	broad.mit.edu	37	6	30574350	30574350	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R10	5514	broad.mit.edu	37	6	30574350	30574350	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF1	65121	broad.mit.edu	37	1	12853972	12853973	+	Intron	INS	-	CATG	CATG			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD3	23683	broad.mit.edu	37	2	37483767	37483768	+	Intron	INS	-	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRNP	5621	broad.mit.edu	37	20	4680094	4680094	+	Silent	SNP	C	T	T	rs112637437	byFrequency;by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	15989191	15989191	+	Intron	DEL	C	-	-	rs139574888		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43290582	43290582	+	Intron	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTBP2	58155	broad.mit.edu	37	1	97279079	97279080	+	3'UTR	INS	-	T	T	rs138277715	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN4	5775	broad.mit.edu	37	2	120712719	120712719	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677397	198677397	+	Intron	SNP	A	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198677397	198677397	+	Intron	SNP	A	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBMX	27316	broad.mit.edu	37	X	135961601	135961602	+	5'UTR	DEL	GG	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCBTB2	1102	broad.mit.edu	37	13	49076005	49076005	+	Splice_Site	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCOR1	23186	broad.mit.edu	37	14	103187590	103187590	+	Intron	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176012985	176012985	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL1	9028	broad.mit.edu	37	16	726739	726739	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105261141	105261144	+	Intron	DEL	TTCC	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK1	83732	broad.mit.edu	37	6	7402814	7402814	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78328041	78328041	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNFT1	51136	broad.mit.edu	37	17	58030552	58030552	+	Intron	DEL	T	-	-	rs111894176		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178989683	178989683	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	178989683	178989683	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128699521	128699521	+	3'UTR	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBNO1	55206	broad.mit.edu	37	12	123810324	123810330	+	Intron	DEL	ATTTAGG	-	-	rs72419030		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN1	9805	broad.mit.edu	37	7	30008662	30008662	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN1	9805	broad.mit.edu	37	7	30008662	30008662	+	Missense_Mutation	SNP	A	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCTR	6344	broad.mit.edu	37	2	120209616	120209616	+	Missense_Mutation	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDF4	51150	broad.mit.edu	37	1	1159219	1159219	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A1	29927	broad.mit.edu	37	3	127785935	127785935	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A1	29927	broad.mit.edu	37	3	127785935	127785935	+	Nonsense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4C	54910	broad.mit.edu	37	2	97530887	97530888	+	Intron	INS	-	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61304926	61304926	+	3'UTR	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61304926	61304926	+	3'UTR	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF1	7536	broad.mit.edu	37	11	64534716	64534716	+	Nonsense_Mutation	SNP	G	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A4	26266	broad.mit.edu	37	7	135377051	135377051	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A4	26266	broad.mit.edu	37	7	135377051	135377051	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79225243	79225244	+	Intron	INS	-	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A4	55630	broad.mit.edu	37	8	145640272	145640272	+	Silent	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98760826	98760827	+	3'UTR	INS	-	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84270599	84270599	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84270599	84270599	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179320360	179320360	+	Intron	SNP	A	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108427576	108427576	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108427576	108427576	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121447981	121447981	+	Intron	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121447981	121447981	+	Intron	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231077421	231077421	+	Intron	SNP	G	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK6	404203	broad.mit.edu	37	5	147585796	147585803	+	Intron	DEL	ACCTAACC	-	-	rs62388546		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPNS1	83985	broad.mit.edu	37	16	28992631	28992632	+	Intron	INS	-	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55909089	55909089	+	Missense_Mutation	SNP	G	A	A	rs141106732		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPO11	23626	broad.mit.edu	37	20	55909089	55909089	+	Missense_Mutation	SNP	G	A	A	rs141106732		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SS18L1	26039	broad.mit.edu	37	20	60740585	60740599	+	Intron	DEL	TGCGTGCTGGGCTCG	-	-	rs60919036		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53071617	53071617	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53071617	53071617	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99796183	99796183	+	Missense_Mutation	SNP	G	A	A	rs149765159		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99796183	99796183	+	Missense_Mutation	SNP	G	A	A	rs149765159		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68424379	68424380	+	5'Flank	DEL	TG	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIM2	57620	broad.mit.edu	37	4	26921325	26921325	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38L	23012	broad.mit.edu	37	12	27467353	27467354	+	Intron	DEL	GT	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK38	11329	broad.mit.edu	37	6	36483102	36483103	+	Intron	INS	-	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRN	6801	broad.mit.edu	37	2	37152399	37152400	+	Intron	INS	-	ACAGT	ACAGT			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70570723	70570723	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70570723	70570723	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF2	55959	broad.mit.edu	37	20	46294778	46294779	+	Intron	INS	-	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10891652	10891655	+	Intron	DEL	TTTT	-	-	rs71550740		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104640578	104640578	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACR3	6870	broad.mit.edu	37	4	104640578	104640578	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA1	117143	broad.mit.edu	37	1	166845370	166845370	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA1	117143	broad.mit.edu	37	1	166845370	166845370	+	Intron	SNP	T	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAL1	6886	broad.mit.edu	37	1	47685630	47685630	+	Missense_Mutation	SNP	C	T	T	rs150044548	byFrequency	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100009497	100009497	+	Silent	SNP	T	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100229865	100229865	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFR2	7036	broad.mit.edu	37	7	100229865	100229865	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133984820	133984821	+	Intron	DEL	TG	-	-	rs1554541		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS1	7057	broad.mit.edu	37	15	39881579	39881579	+	Intron	DEL	C	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS1	7057	broad.mit.edu	37	15	39881579	39881579	+	Intron	DEL	C	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	138033675	138033682	+	Intron	DEL	ATATTTGA	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMELESS	8914	broad.mit.edu	37	12	56811767	56811767	+	Silent	SNP	C	T	T	rs140801238	byFrequency	TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM163	81615	broad.mit.edu	37	2	135215671	135215671	+	Silent	SNP	C	G	G	rs17852356		TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170784257	170784257	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6A	27327	broad.mit.edu	37	16	24820824	24820824	+	Intron	DEL	A	-	-	rs139730684		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP73	7161	broad.mit.edu	37	1	3599647	3599647	+	Missense_Mutation	SNP	A	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7B	145567	broad.mit.edu	37	14	91110624	91110625	+	Intron	DEL	CG	-	-	rs1286424	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TULP3	7289	broad.mit.edu	37	12	3047432	3047432	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44524456	44524456	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19491596	19491596	+	Intron	SNP	T	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL3	7347	broad.mit.edu	37	13	76179846	76179846	+	Intron	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100466570	100466570	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100466570	100466570	+	Missense_Mutation	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP49	25862	broad.mit.edu	37	6	41774070	41774070	+	Missense_Mutation	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101674816	101674816	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38978176	38978177	+	IGR	INS	-	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38982130	38982130	+	IGR	DEL	T	-	-	rs145407156		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089492	61089492	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6462246	6462246	+	IGR	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	27738491	27738491	+	IGR	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	151742420	151742420	+	IGR	DEL	C	-	-	rs35221320		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924711	91924712	+	IGR	INS	-	GGTCTGAGAA	GGTCTGAGAA	rs60861855		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	92075494	92075495	+	IGR	INS	-	TGT	TGT			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68685552	68685552	+	IGR	SNP	A	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113543495	113543495	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	121975375	121975375	+	IGR	DEL	T	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127683773	127683773	+	IGR	SNP	A	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547302	66547302	+	IGR	SNP	C	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141031647	141031647	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68427939	68427940	+	IGR	DEL	AT	-	-	rs113084687		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52640311	52640311	+	IGR	DEL	A	-	-			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	106182543	106182543	+	IGR	SNP	A	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4536941	4536941	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16553530	16553530	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089492	61089492	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	6462246	6462246	+	IGR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23158156	23158156	+	IGR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43788294	43788294	+	IGR	SNP	T	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158425022	158425022	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	35444475	35444475	+	IGR	SNP	T	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	68685552	68685552	+	IGR	SNP	A	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113543495	113543495	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127683773	127683773	+	IGR	SNP	A	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547302	66547302	+	IGR	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	128108981	128108981	+	IGR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62702039	62702039	+	IGR	SNP	C	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88268707	88268707	+	IGR	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138710166	138710166	+	IGR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29885880	29885880	+	IGR	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68435887	68435887	+	IGR	SNP	G	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712288	144712288	+	IGR	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136671295	136671295	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSIG10	54621	broad.mit.edu	37	12	118533288	118533288	+	Intron	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53901835	53901835	+	Intron	SNP	G	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53901835	53901835	+	Intron	SNP	G	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDSUB1	151525	broad.mit.edu	37	2	160139521	160139521	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT4	54361	broad.mit.edu	37	1	22453966	22453967	+	Intron	INS	-	CA	CA			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167850949	167850949	+	Silent	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWC1	23286	broad.mit.edu	37	5	167850949	167850949	+	Silent	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YTHDC1	91746	broad.mit.edu	37	4	69197934	69197935	+	Intron	INS	-	A	A			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100352835	100352836	+	Intron	INS	-	G	G	rs145118358	by1000genomes	TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100348589	100348589	+	Intron	SNP	A	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC4	29063	broad.mit.edu	37	4	25314313	25314314	+	5'Flank	INS	-	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF428	126299	broad.mit.edu	37	19	44111665	44111665	+	3'UTR	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF562	54811	broad.mit.edu	37	19	9764563	9764563	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF562	54811	broad.mit.edu	37	19	9764563	9764563	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF582	147948	broad.mit.edu	37	19	56895604	56895604	+	Silent	SNP	G	A	A			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151260444	151260444	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF687	57592	broad.mit.edu	37	1	151260444	151260444	+	Missense_Mutation	SNP	C	G	G			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15871633	15871633	+	RNA	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142799740	142799740	+	Intron	SNP	G	C	C			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	33786819	33786819	+	5'Flank	SNP	C	T	T			TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143508187	143508188	+	Intron	INS	-	T	T	rs150064856		TCGA-64-1680-01A-02D-0969-08	TCGA-64-1680-10A-01D-1040-01			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15871633	15871633	+	RNA	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	127004807	127004807	+	Intron	SNP	C	T	T			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	29761851	29761853	+	Intron	DEL	ATC	-	-			TCGA-64-1680-01A-02W-0928-08	TCGA-64-1680-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
