lsf stdout
Sender: LSF System <lsf@node1431>
Subject: Job 6523623: <sh /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_MergeDataFiles.3.88/run_exe.csh /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_MergeDataFiles.3.88/merge_txt_files /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12/2170799/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv PANCAN12.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt row 1 >> cmd.out> Done

Job <sh /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_MergeDataFiles.3.88/run_exe.csh /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_MergeDataFiles.3.88/merge_txt_files /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12/2170799/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv PANCAN12.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt row 1 >> cmd.out> was submitted from host <node1556> by user <cgaadm> in cluster <cromwell>.
Job was executed on host(s) <node1431>, in queue <cga>, as user <cgaadm> in cluster <cromwell>.
</home/unix/cgaadm> was used as the home directory.
</xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/272841> was used as the working directory.
Started at Fri Dec 21 22:16:35 2012
Results reported at Fri Dec 21 22:19:32 2012

Your job looked like:

------------------------------------------------------------
# LSBATCH: User input
sh /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_MergeDataFiles.3.88/run_exe.csh /xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/GDAC_MergeDataFiles.3.88/merge_txt_files /xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12/2170799/GDAC_MergeDataFiles2.inputfilelist.filename.input.tsv PANCAN12.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_minus_germline_cnv_hg19__seg.seg.txt row 1 >> cmd.out
------------------------------------------------------------

Successfully completed.

Resource usage summary:

    CPU time   :    112.47 sec.
    Max Memory :        16 MB
    Max Swap   :        57 MB

    Max Processes  :         4
    Max Threads    :         5

The output (if any) follows:



PS:

Read file <.lsf.err> for stderr output of this job.

lsf stderr
