Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA10	10349	broad.mit.edu	37	17	67225857	67225860	+	Intron	DEL	TTAA	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215823182	215823182	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87215073	87215073	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87104552	87104552	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB6	10058	broad.mit.edu	37	2	220078715	220078715	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183905677	183905677	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI2	10152	broad.mit.edu	37	2	204245042	204245042	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100511565	100511565	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD9	28976	broad.mit.edu	37	3	128631436	128631436	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER1	125981	broad.mit.edu	37	19	6307196	6307196	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACHE	43	broad.mit.edu	37	7	100490831	100490831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80655813	80655813	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL3	2181	broad.mit.edu	37	2	223786246	223786246	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20435268	20435268	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20451031	20451031	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127737770	127737770	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33595922	33595922	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520444	72520444	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100692722	100692722	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28302381	28302381	+	Splice_Site	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123046446	123046446	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70900204	70900204	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112046029	112046029	+	5'UTR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159378207	159378207	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7774451	7774451	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1	60312	broad.mit.edu	37	4	7774740	7774740	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236836990	236836990	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47736297	47736297	+	5'UTR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459755	148459755	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109668028	109668029	+	Intron	DNP	CT	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L1	64850	broad.mit.edu	37	4	109674112	109674112	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2	64902	broad.mit.edu	37	5	35033369	35033369	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129008294	129008294	+	Intron	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105415933	105415933	+	Missense_Mutation	SNP	G	T	T	rs79599750	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105416781	105416781	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK	79026	broad.mit.edu	37	11	62287500	62287500	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106975409	106975409	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49955803	49955803	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33242914	33242914	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH4A1	8659	broad.mit.edu	37	1	19201071	19201071	+	Missense_Mutation	SNP	C	T	T	rs150916561	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29973499	29973499	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMHR2	269	broad.mit.edu	37	12	53818674	53818674	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMICA1	120425	broad.mit.edu	37	11	118065007	118065007	+	3'UTR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMOTL1	154810	broad.mit.edu	37	11	94603922	94603922	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38530670	38530670	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	73944297	73944297	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD58	347454	broad.mit.edu	37	X	118893528	118893528	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124748110	124748110	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M2	10053	broad.mit.edu	37	19	10692546	10692546	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APEX2	27301	broad.mit.edu	37	X	55028735	55028735	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC2	10930	broad.mit.edu	37	6	41029415	41029415	+	Silent	SNP	G	A	A	rs140342245	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21233079	21233079	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128842725	128842725	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP36	158763	broad.mit.edu	37	X	130222687	130222687	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF17	9828	broad.mit.edu	37	11	73066631	73066631	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF2	9181	broad.mit.edu	37	1	155935421	155935421	+	Splice_Site	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF4	50649	broad.mit.edu	37	2	131785476	131785477	+	Intron	DNP	CC	AT	AT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF9	23229	broad.mit.edu	37	X	62875606	62875607	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSH	347527	broad.mit.edu	37	X	2951228	2951228	+	Silent	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMT	438	broad.mit.edu	37	X	1743015	1743015	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	177002042	177002042	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119538064	119538064	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG16L1	55054	broad.mit.edu	37	2	234178781	234178782	+	Intron	INS	-	T	T	rs72400208		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160097378	160097378	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10382001	10382001	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142279274	142279274	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVL9	23080	broad.mit.edu	37	7	32718663	32718663	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AWAT1	158833	broad.mit.edu	37	X	69454533	69454533	+	5'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS1	582	broad.mit.edu	37	11	66278094	66278094	+	5'Flank	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156616317	156616317	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70051351	70051351	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34193562	34193562	+	3'UTR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	95982155	95982155	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1B	658	broad.mit.edu	37	4	96025651	96025651	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	112991422	112991422	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31624305	31624305	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41243327	41243327	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL3	10917	broad.mit.edu	37	5	180432597	180432597	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180376336	180376336	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf128	170371	broad.mit.edu	37	10	50376118	50376118	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33640005	33640005	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf21	161424	broad.mit.edu	37	14	24770785	24770786	+	Intron	INS	-	CC	CC			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf87	388325	broad.mit.edu	37	17	5126577	5126577	+	Intron	SNP	C	T	T	rs140910174	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13621000	13621000	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf41	126123	broad.mit.edu	37	19	50655823	50655823	+	3'UTR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf150	148823	broad.mit.edu	37	1	247737489	247737489	+	Silent	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57209895	57209895	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf189	388701	broad.mit.edu	37	1	154172104	154172104	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf189	388701	broad.mit.edu	37	1	154172860	154172860	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34666017	34666017	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf191	149934	broad.mit.edu	37	20	26084302	26084302	+	Silent	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf85	128602	broad.mit.edu	37	20	56735866	56735866	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf52	151477	broad.mit.edu	37	2	232373754	232373754	+	3'UTR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf56	55471	broad.mit.edu	37	2	37463238	37463238	+	Splice_Site	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71201385	71201385	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf48	50854	broad.mit.edu	37	6	31804876	31804876	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40909774	40909774	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40950045	40950045	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf79	286234	broad.mit.edu	37	9	90500661	90500661	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP1	9478	broad.mit.edu	37	12	121098793	121098793	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2797765	2797765	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181701996	181701996	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181752856	181752856	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	55107633	55107633	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54496524	54496524	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO2	10241	broad.mit.edu	37	17	46929831	46929831	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219903373	219903373	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC41	51134	broad.mit.edu	37	12	94817787	94817787	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC76	54482	broad.mit.edu	37	1	100609673	100609673	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50052412	50052412	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17071757	17071757	+	3'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17076112	17076112	+	5'Flank	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7640520	7640521	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD177	57126	broad.mit.edu	37	19	43858045	43858045	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67614469	67614469	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD38	952	broad.mit.edu	37	4	15850126	15850126	+	Intron	SNP	G	A	A	rs113397939	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20B	166979	broad.mit.edu	37	5	54439310	54439310	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884134	21884134	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44845703	44845703	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122747999	122747999	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34061814	34061814	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES4	51716	broad.mit.edu	37	16	55801510	55801510	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196646637	196646637	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196694367	196694367	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGREF1	10669	broad.mit.edu	37	2	27321927	27321927	+	3'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHKA	1119	broad.mit.edu	37	11	67842099	67842099	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85158369	85158369	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45672125	45672125	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN5	1184	broad.mit.edu	37	X	49853406	49853406	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN25	644672	broad.mit.edu	37	11	113651176	113651176	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLGN	1047	broad.mit.edu	37	4	141315153	141315153	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP2	7461	broad.mit.edu	37	7	73803343	73803343	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP4	79745	broad.mit.edu	37	2	29397158	29397158	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNK	116449	broad.mit.edu	37	4	10492115	10492115	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1L	81037	broad.mit.edu	37	5	1334426	1334426	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTC	1213	broad.mit.edu	37	17	57758212	57758212	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108685616	108685616	+	3'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB1	1258	broad.mit.edu	37	16	57996799	57996799	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21613414	21613414	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70723393	70723393	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41421797	41421797	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3080704	3080704	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103400031	103400031	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107418685	107418686	+	Intron	DNP	GG	AT	AT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107419023	107419023	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107421847	107421847	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10077014	10077014	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238274590	238274590	+	Missense_Mutation	SNP	G	T	T	rs144592806		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA5	93979	broad.mit.edu	37	7	130000900	130000900	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211527852	211527852	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27003783	27003783	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBB1	1414	broad.mit.edu	37	22	27003934	27003934	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2910077	2910077	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113256561	113256561	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113403104	113403104	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114186138	114186138	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	79878803	79878803	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2	83992	broad.mit.edu	37	7	117386172	117386172	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27A1	1593	broad.mit.edu	37	2	219677164	219677164	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2B7P1	1556	broad.mit.edu	37	19	41442056	41442056	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42006575	42006575	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF13	25879	broad.mit.edu	37	8	104447974	104447974	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC2	51473	broad.mit.edu	37	6	24178818	24178818	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS2	54798	broad.mit.edu	37	4	155256138	155256138	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91539818	91539818	+	3'UTR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110653091	110653091	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31246188	31246188	+	Missense_Mutation	SNP	G	T	T	rs141182085	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX11	1663	broad.mit.edu	37	12	31256562	31256562	+	Silent	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX17	10521	broad.mit.edu	37	22	38883820	38883820	+	Intron	SNP	A	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEK	7913	broad.mit.edu	37	6	18250029	18250029	+	Silent	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31697450	31697450	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14733850	14733850	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185986570	185986570	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137341260	137341260	+	Silent	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50121187	50121187	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX38	9785	broad.mit.edu	37	16	72131547	72131547	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX38	9785	broad.mit.edu	37	16	72137103	72137103	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83194499	83194499	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3534474	3534474	+	Missense_Mutation	SNP	C	A	A	rs150743119		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMC1	11144	broad.mit.edu	37	22	38958222	38958222	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21818511	21818511	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21035953	21035953	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13792290	13792291	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11784564	11784564	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK11	139818	broad.mit.edu	37	X	117777355	117777355	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169101394	169101394	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169188431	169188431	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169494742	169494742	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK2	9046	broad.mit.edu	37	8	21767487	21767487	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P1	554236	broad.mit.edu	37	7	35221011	35221011	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27162815	27162815	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784013	9784013	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784138	9784138	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP13	51207	broad.mit.edu	37	10	76861638	76861638	+	3'UTR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK3	8444	broad.mit.edu	37	1	206821481	206821481	+	Missense_Mutation	SNP	G	A	A	rs17851298		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE1	1889	broad.mit.edu	37	1	21546569	21546569	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55223445	55223445	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK1	27102	broad.mit.edu	37	7	6064471	6064471	+	Intron	DEL	T	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENY2	56943	broad.mit.edu	37	8	110348348	110348348	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66213936	66213936	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66361297	66361297	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142567864	142567864	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212566794	212566794	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14027985	14027985	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERN1	2081	broad.mit.edu	37	17	62126570	62126570	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERO1L	30001	broad.mit.edu	37	14	53119002	53119002	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETHE1	23474	broad.mit.edu	37	19	44011414	44011414	+	Intron	SNP	T	C	C	rs140931919	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6219260	6219260	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F2RL2	2151	broad.mit.edu	37	5	75914382	75914382	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP6	2172	broad.mit.edu	37	5	159626017	159626017	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP6	2172	broad.mit.edu	37	5	159640740	159640740	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50278643	50278643	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14709774	14709774	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14816535	14816535	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123B	139285	broad.mit.edu	37	X	63410856	63410856	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139357806	139357807	+	Intron	INS	-	T	T	rs147505929	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61022236	61022236	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM187B	148109	broad.mit.edu	37	19	35718770	35718770	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198A	729085	broad.mit.edu	37	3	43039723	43039723	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21826405	21826405	+	RNA	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10677895	10677895	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM46D	169966	broad.mit.edu	37	X	79698584	79698584	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177249498	177249498	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067901	190067901	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM73A	374986	broad.mit.edu	37	1	78332177	78332177	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45644661	45644661	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCM	57697	broad.mit.edu	37	14	45645426	45645426	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207651527	207651527	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150920038	150920038	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086011	92086011	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8137954	8137954	+	Missense_Mutation	SNP	C	A	A	rs140397273		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL7	23194	broad.mit.edu	37	5	15500923	15500923	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2B	2213	broad.mit.edu	37	1	161646500	161646501	+	Intron	INS	-	C	C	rs72510532		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125076606	125076606	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD2	221472	broad.mit.edu	37	6	36981397	36981398	+	Missense_Mutation	DNP	CC	AA	AA	rs151050710		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27943687	27943687	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34261339	34261339	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142487923	142487923	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	113937204	113937204	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79258885	79258885	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79301129	79301129	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37745597	37745597	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD2	143162	broad.mit.edu	37	10	49371393	49371393	+	Frame_Shift_Del	DEL	A	-	-	rs151138817	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD2	123722	broad.mit.edu	37	15	83440922	83440922	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71318329	71318329	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAA	2548	broad.mit.edu	37	17	78091366	78091366	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46930518	46930518	+	Silent	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27126012	27126012	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27571917	27571917	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR3	200959	broad.mit.edu	37	3	97742983	97742983	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCDH	2639	broad.mit.edu	37	19	13002761	13002761	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCM2	9247	broad.mit.edu	37	6	10876278	10876278	+	Intron	DEL	T	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDNF	2668	broad.mit.edu	37	5	37815778	37815778	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFOD1	54438	broad.mit.edu	37	6	13434727	13434727	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42689048	42689048	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42005031	42005031	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMDS	2762	broad.mit.edu	37	6	1734040	1734040	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMEB1	10691	broad.mit.edu	37	1	29030714	29030714	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155649577	155649577	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPAM	57678	broad.mit.edu	37	10	113941420	113941420	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	132887385	132887385	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR101	83550	broad.mit.edu	37	X	136112735	136112735	+	Missense_Mutation	SNP	C	T	T	rs144604669		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100384183	100384183	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR148	344561	broad.mit.edu	37	2	131487730	131487730	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR179	440435	broad.mit.edu	37	17	36485475	36485475	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113588524	113588524	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAP2	9402	broad.mit.edu	37	22	40344529	40344529	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158283916	158283916	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93226002	93226002	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94436539	94436539	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102134215	102134215	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66849137	66849137	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP2	80852	broad.mit.edu	37	3	14552740	14552740	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146755823	146755823	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMC	56169	broad.mit.edu	37	8	130763646	130763646	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSG1L	146395	broad.mit.edu	37	16	27840244	27840244	+	Silent	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUF1	60558	broad.mit.edu	37	4	44690190	44690190	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS2	2998	broad.mit.edu	37	12	21721684	21721684	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDDC2	51020	broad.mit.edu	37	6	125614247	125614247	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58133654	58133654	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43506055	43506055	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65409583	65409583	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65427133	65427133	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65427991	65427991	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65479926	65479926	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81346652	81346652	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1C	3006	broad.mit.edu	37	6	26056117	26056117	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186106104	186106104	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	186141192	186141192	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43298588	43298588	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGXB3	22993	broad.mit.edu	37	5	149386189	149386189	+	Silent	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162917412	162917412	+	Missense_Mutation	SNP	G	C	C	rs141056157	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4G	3174	broad.mit.edu	37	8	76476135	76476135	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER2	9455	broad.mit.edu	37	15	83586584	83586584	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27147963	27147963	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD10	3236	broad.mit.edu	37	2	176982041	176982041	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRASLS2	54979	broad.mit.edu	37	11	63325807	63325807	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118440738	118440738	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1L	3305	broad.mit.edu	37	6	31778780	31778780	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148571704	148571704	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF22	283284	broad.mit.edu	37	11	18730952	18730952	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF3	3321	broad.mit.edu	37	1	117208912	117208912	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100963518	100963518	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156496383	156496383	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISX	91464	broad.mit.edu	37	22	35480203	35480203	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH5L	347365	broad.mit.edu	37	X	54783871	54783871	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156673104	156673104	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35107304	35107304	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35107376	35107376	+	Silent	SNP	A	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JHDM1D	80853	broad.mit.edu	37	7	139833408	139833408	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KATNAL2	83473	broad.mit.edu	37	18	44543260	44543260	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17793327	17793327	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC1	3746	broad.mit.edu	37	11	17793919	17793919	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110765573	110765573	+	Intron	SNP	C	A	A	rs61784496		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH2	3757	broad.mit.edu	37	7	150648759	150648759	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19492795	19492795	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169984083	169984083	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP1	30820	broad.mit.edu	37	5	169994645	169994645	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	20884214	20884214	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154821810	154821810	+	Intron	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142649470	142649470	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197428579	197428579	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0754	643314	broad.mit.edu	37	1	39878284	39878284	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138607844	138607844	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36870091	36870091	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39413574	39413574	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT23	25984	broad.mit.edu	37	17	39081682	39081682	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT83	3889	broad.mit.edu	37	12	52710329	52710329	+	Missense_Mutation	SNP	G	T	T	rs145387028		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-6	386674	broad.mit.edu	37	21	46011398	46011398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP26-1	388818	broad.mit.edu	37	21	31691909	31691909	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651702	1651702	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-1	337966	broad.mit.edu	37	21	31988960	31988960	+	5'Flank	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-8	83901	broad.mit.edu	37	17	39394360	39394360	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6244450	6244450	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6950810	6950810	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB2	3913	broad.mit.edu	37	3	49158970	49158970	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	129077035	129077035	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145506030	145506031	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASS3	204219	broad.mit.edu	37	15	101024601	101024601	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1E	353135	broad.mit.edu	37	1	152759864	152759864	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3E	353145	broad.mit.edu	37	1	152538444	152538444	+	Missense_Mutation	SNP	C	A	A	rs145382354	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136561508	136561508	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD3	143458	broad.mit.edu	37	11	36248861	36248861	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR6	59352	broad.mit.edu	37	1	202276138	202276138	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54783978	54783978	+	Intron	SNP	G	T	T	rs148054407	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNA	4000	broad.mit.edu	37	1	156106683	156106683	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91829941	91829941	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC93432	93432	broad.mit.edu	37	7	141837261	141837261	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81968279	81968279	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN2	9663	broad.mit.edu	37	18	2940579	2940579	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40359793	40359793	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141083260	141083260	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141707834	141707834	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170029576	170029576	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861508	52861508	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101566135	101566135	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSP1	4046	broad.mit.edu	37	11	1904722	1904722	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24750668	24750668	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160771579	160771579	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD6B	130576	broad.mit.edu	37	2	150071214	150071214	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148798327	148798327	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151869755	151869755	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140993694	140993694	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC3	139081	broad.mit.edu	37	X	140985462	140985462	+	Silent	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGED2	10916	broad.mit.edu	37	X	54841562	54841562	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23889629	23889629	+	Silent	SNP	A	G	G	rs150927765	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65455878	65455878	+	Intron	SNP	A	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	139982623	139982623	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165109835	165109835	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165109847	165109847	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220804410	220804410	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASTL	84930	broad.mit.edu	37	10	27459686	27459686	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH2	4191	broad.mit.edu	37	7	75686684	75686684	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126705635	126705635	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37184499	37184499	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15725982	15725983	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MET	4233	broad.mit.edu	37	7	116435746	116435746	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPEP	4285	broad.mit.edu	37	13	24437451	24437451	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR105-1	406897	broad.mit.edu	37	X	151560698	151560698	+	RNA	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR509-2	100126301	broad.mit.edu	37	X	146342222	146342222	+	5'Flank	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102562424	102562424	+	3'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP9	4318	broad.mit.edu	37	20	44641100	44641101	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MON2	23041	broad.mit.edu	37	12	62861048	62861048	+	Silent	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX3	117195	broad.mit.edu	37	11	18159367	18159367	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL1	65008	broad.mit.edu	37	4	78792919	78792919	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL1	65008	broad.mit.edu	37	4	78830342	78830342	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL35	51318	broad.mit.edu	37	2	86433236	86433236	+	Silent	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRVI1	10335	broad.mit.edu	37	11	10631409	10631409	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL2	55167	broad.mit.edu	37	3	135871276	135871276	+	Silent	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1E	4493	broad.mit.edu	37	16	56660466	56660466	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	237057839	237057839	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125716189	125716189	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9009970	9009970	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9010703	9010703	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100701466	100701466	+	3'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10206700	10206701	+	Intron	DNP	GG	TT	TT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10248693	10248693	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108124234	108124234	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108188791	108188791	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10397987	10397987	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10542491	10542491	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10317454	10317454	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171259201	171259201	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171264049	171264049	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171509646	171509647	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666882	12666882	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40054198	40054198	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1893091	1893091	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101735418	101735418	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101736178	101736178	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101936254	101936254	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L4	4676	broad.mit.edu	37	11	2975954	2975954	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT8B	51471	broad.mit.edu	37	2	73928256	73928256	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19649302	19649302	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78334223	78334223	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78521058	78521058	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145235740	145235740	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF22P	285622	broad.mit.edu	37	5	85582742	85582742	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144828751	144828751	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	145118062	145118062	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG2	54892	broad.mit.edu	37	7	158444966	158444966	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52639627	52639627	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20961772	20961773	+	Intron	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70423255	70423255	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAM1	150372	broad.mit.edu	37	22	42805350	42805350	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247592923	247592923	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55451547	55451547	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155774357	155774357	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44556278	44556278	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34701233	34701233	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C2	4306	broad.mit.edu	37	4	149020209	149020209	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF2	4957	broad.mit.edu	37	9	131221956	131221956	+	Intron	SNP	A	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	166854833	166854833	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OIT3	170392	broad.mit.edu	37	10	74678107	74678107	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53603187	53603187	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1SW	611	broad.mit.edu	37	7	128414503	128414503	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN1SW	611	broad.mit.edu	37	7	128415641	128415641	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47762885	47762885	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G7	390265	broad.mit.edu	37	11	123909453	123909453	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10H1	26539	broad.mit.edu	37	19	15918412	15918412	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14A16	284532	broad.mit.edu	37	1	247978921	247978921	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1S1	219959	broad.mit.edu	37	11	57982975	57982975	+	Silent	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6806521	6806521	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925140	27925140	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G2	81470	broad.mit.edu	37	1	247752266	247752266	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2K2	26248	broad.mit.edu	37	9	114090037	114090037	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248186176	248186176	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L8	391190	broad.mit.edu	37	1	248112211	248112211	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458257	248458257	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248814011	248814011	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51S1	119692	broad.mit.edu	37	11	4870609	4870609	+	5'Flank	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A1	219982	broad.mit.edu	37	11	59211010	59211010	+	Silent	SNP	C	T	T	rs139346783	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310158	56310158	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310375	56310375	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M9	390162	broad.mit.edu	37	11	56230020	56230020	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C75	390323	broad.mit.edu	37	12	55759235	55759235	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B12	219858	broad.mit.edu	37	11	124413483	124413483	+	Missense_Mutation	SNP	C	T	T	rs140680123		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55873058	55873058	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56125385	56125385	+	5'Flank	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21747287	21747288	+	Intron	DNP	TC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL6	114880	broad.mit.edu	37	2	179237002	179237002	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21771800	21771800	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43552617	43552617	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43552706	43552706	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC3	5042	broad.mit.edu	37	13	25670320	25670320	+	5'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK6	56924	broad.mit.edu	37	15	40566420	40566420	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128551056	128551056	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCB	5096	broad.mit.edu	37	3	136019916	136019916	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134072874	134072874	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134184	91134184	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55877248	55877248	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55973670	55973671	+	Intron	DNP	GG	TT	TT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA12	56137	broad.mit.edu	37	5	140255726	140255726	+	Silent	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB10	56126	broad.mit.edu	37	5	140572791	140572791	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA10	56106	broad.mit.edu	37	5	140792989	140792990	+	Frame_Shift_Ins	INS	-	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719583	140719583	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744814	140744814	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740333	140740333	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93038077	93038077	+	3'UTR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82784790	82784790	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233231426	233231426	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4A	5141	broad.mit.edu	37	19	10578066	10578066	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFD	80310	broad.mit.edu	37	11	103814370	103814370	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55153719	55153719	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197791263	197791263	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGD	5226	broad.mit.edu	37	1	10468241	10468241	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153277302	153277302	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR3	116154	broad.mit.edu	37	20	58342642	58342642	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11076020	11076020	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47621563	47621563	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2B	5287	broad.mit.edu	37	1	204426904	204426904	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110432879	110432879	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131476670	131476670	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8721041	8721041	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9434133	9434133	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96025729	96025729	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198840394	198840394	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL2	23228	broad.mit.edu	37	3	17051619	17051619	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD3	345557	broad.mit.edu	37	5	41313939	41313939	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132093114	132093114	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132110018	132110018	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161160062	161160062	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4512253	4512253	+	Silent	SNP	C	A	A	rs113773915	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12017260	12017260	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNCK	139728	broad.mit.edu	37	X	152937077	152937077	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA1	285848	broad.mit.edu	37	6	36262160	36262161	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121265496	121265496	+	5'Flank	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76797421	76797421	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPME1	51400	broad.mit.edu	37	11	73941432	73941432	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37547336	37547336	+	3'UTR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3F	89801	broad.mit.edu	37	X	49138361	49138361	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981373	70981373	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47350872	47350872	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57264865	57264865	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57339799	57339801	+	Intron	DEL	CGA	-	-	rs11306040		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57504961	57504961	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151478165	151478165	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76077069	76077069	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35065278	35065278	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT8	56341	broad.mit.edu	37	12	3659225	3659225	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR2	128674	broad.mit.edu	37	20	5295055	5295055	+	5'Flank	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	16019886	16019886	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150298364	150298364	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57256883	57256883	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43699029	43699029	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43674435	43674435	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43441241	43441241	+	Translation_Start_Site	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11574470	11574470	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8454451	8454451	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRG	5793	broad.mit.edu	37	3	61548019	61548019	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55693324	55693324	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48161351	48161351	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71056254	71056254	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52232477	52232477	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52232546	52232546	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220368420	220368420	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGDS	5900	broad.mit.edu	37	9	135975612	135975612	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21936606	21936606	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3247775	3247775	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117250118	117250118	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	240934053	240934053	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90020313	90020313	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87513828	87513828	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21387723	21387723	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74151342	74151342	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF165	494470	broad.mit.edu	37	18	44036340	44036340	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF31	55072	broad.mit.edu	37	14	24620140	24620140	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPSAP58	388524	broad.mit.edu	37	19	23990678	23990678	+	5'UTR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTDR1	27156	broad.mit.edu	37	22	23401824	23401824	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67809534	67809534	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38934654	38934654	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38976703	38976703	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39014637	39014637	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237619805	237619805	+	Intron	SNP	C	A	A	rs143025438	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237948033	237948033	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51171412	51171412	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART3	9733	broad.mit.edu	37	12	108917427	108917427	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF2	81846	broad.mit.edu	37	11	10024312	10024312	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165986331	165986331	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62022909	62022909	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31A	22872	broad.mit.edu	37	4	83784523	83784523	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4C	54910	broad.mit.edu	37	2	97531534	97531534	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48057357	48057357	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101058994	101058994	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT3	55964	broad.mit.edu	37	22	42387523	42387523	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100780228	100780228	+	Intron	SNP	G	A	A	rs34472055		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135144961	135144961	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF4	57794	broad.mit.edu	37	19	19413247	19413247	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC1	54436	broad.mit.edu	37	4	8224565	8224565	+	Splice_Site	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK3	85358	broad.mit.edu	37	22	51153863	51153863	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA9	729993	broad.mit.edu	37	16	13164155	13164155	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	591680	591680	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52115380	52115380	+	3'UTR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72117072	72117072	+	Silent	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPD	128646	broad.mit.edu	37	20	1538216	1538216	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1616715	1616715	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLAIN2	57606	broad.mit.edu	37	4	48381691	48381691	+	Intron	DEL	T	-	-	rs76866681		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A4	26266	broad.mit.edu	37	7	135366289	135366289	+	3'UTR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC15A1	6564	broad.mit.edu	37	13	99362207	99362207	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25850352	25850352	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25850897	25850897	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A37	51312	broad.mit.edu	37	8	23425904	23425904	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92405985	92405985	+	Intron	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A1	2030	broad.mit.edu	37	6	44199863	44199863	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F4	341880	broad.mit.edu	37	14	58033208	58033208	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47170676	47170676	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A11	201266	broad.mit.edu	37	17	70756780	70756780	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19445804	19445804	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42338214	42338214	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170214125	170214125	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A3	84889	broad.mit.edu	37	X	70146528	70146528	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21196235	21196235	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168620577	168620577	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142717232	142717232	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112344147	112344147	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD2	6610	broad.mit.edu	37	6	109763928	109763928	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51415442	51415442	+	Splice_Site	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE2	441273	broad.mit.edu	37	7	102196081	102196081	+	Intron	DEL	A	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220338542	220338542	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2B	6701	broad.mit.edu	37	1	153043031	153043031	+	3'UTR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158618447	158618447	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2816129	2816129	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119563201	119563201	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSBP3	23648	broad.mit.edu	37	1	54706519	54706519	+	Intron	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST8SIA6	338596	broad.mit.edu	37	10	17363108	17363108	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99797814	99797814	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63971419	63971419	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK39	27347	broad.mit.edu	37	2	168931721	168931721	+	Silent	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN2	11075	broad.mit.edu	37	8	80553843	80553843	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA6	64220	broad.mit.edu	37	15	74472367	74472367	+	3'UTR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX2	2054	broad.mit.edu	37	12	131293160	131293160	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53218848	53218848	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1L1	283507	broad.mit.edu	37	13	41417339	41417339	+	Intron	DEL	A	-	-	rs77860933		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO1	7341	broad.mit.edu	37	2	203084823	203084823	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29821409	29821409	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152861100	152861101	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL5	94122	broad.mit.edu	37	X	37985883	37985883	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70621396	70621396	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC1	85461	broad.mit.edu	37	2	160043384	160043384	+	Intron	DEL	T	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150471495	150471495	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10B	26000	broad.mit.edu	37	16	30380611	30380611	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17446185	17446185	+	Splice_Site	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX19	9095	broad.mit.edu	37	1	168262523	168262524	+	Intron	INS	-	TGTT	TGTT	rs140890330	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35242075	35242075	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX20	57057	broad.mit.edu	37	7	35281693	35281694	+	Intron	DEL	CT	-	-	rs10531322		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151747949	151747949	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX11	56159	broad.mit.edu	37	X	70100086	70100086	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114294517	114294517	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP3	51270	broad.mit.edu	37	X	132352132	132352132	+	Silent	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFEB	7942	broad.mit.edu	37	6	41652374	41652375	+	Frame_Shift_Ins	INS	-	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133984967	133984967	+	Silent	SNP	C	T	T	rs141876854	byFrequency	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43735790	43735790	+	Silent	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169629823	169629823	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167020231	167020231	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35699475	35699475	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120474768	120474768	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103279070	103279070	+	Intron	SNP	G	A	A	rs34482001		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM183A	92703	broad.mit.edu	37	1	202985299	202985299	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM215	401498	broad.mit.edu	37	9	32784860	32784860	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM2	23670	broad.mit.edu	37	9	74347398	74347398	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12778341	12778341	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMF1	7110	broad.mit.edu	37	3	69087813	69087813	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11B	132724	broad.mit.edu	37	4	69095079	69095079	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29736468	29736468	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29904489	29904489	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNC2	7125	broad.mit.edu	37	20	44453377	44453377	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS4	84951	broad.mit.edu	37	17	38633803	38633803	+	3'UTR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM7	54543	broad.mit.edu	37	7	22852767	22852767	+	3'UTR	SNP	A	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53I11	9537	broad.mit.edu	37	11	44956347	44956347	+	3'UTR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM2	7169	broad.mit.edu	37	9	35685710	35685710	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934115	10934115	+	Nonsense_Mutation	SNP	T	A	A	rs149333450		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209948414	209948414	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42235934	42235934	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42236657	42236657	+	Silent	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM26	7726	broad.mit.edu	37	6	30164656	30164656	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM58	25893	broad.mit.edu	37	1	248039174	248039174	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRMT61B	55006	broad.mit.edu	37	2	29075411	29075411	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRO	7216	broad.mit.edu	37	X	54956057	54956057	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72935022	72935022	+	3'UTR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31293950	31293950	+	3'UTR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31359918	31359918	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77376484	77376484	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768401	31768401	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769734	31769734	+	Missense_Mutation	SNP	T	C	C	rs146913156		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31778523	31778523	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179424246	179424246	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179486302	179486302	+	Silent	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179599399	179599399	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW3	127253	broad.mit.edu	37	1	75229833	75229833	+	3'UTR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34929516	34929516	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404353	34404353	+	RNA	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A6	54578	broad.mit.edu	37	2	234602084	234602084	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70505129	70505129	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70505336	70505336	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69870917	69870917	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70070415	70070415	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17785597	17785597	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45A	55898	broad.mit.edu	37	15	91479448	91479448	+	Intron	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17370486	17370486	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	145095347	145095347	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	106298671	106298671	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	113241916	113241916	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30800956	30800956	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42383747	42383747	+	IGR	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45685603	45685603	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46174628	46174628	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47595388	47595388	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65928744	65928744	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92812914	92812914	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	112593221	112593221	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	115458254	115458254	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119733890	119733890	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	124121146	124121146	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127810873	127810873	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14462812	14462812	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18218269	18218269	+	IGR	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23399012	23399012	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43543708	43543708	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48486387	48486387	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49009096	49009096	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49120173	49120173	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49455302	49455302	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51459293	51459293	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51527685	51527685	+	IGR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51591370	51591370	+	IGR	SNP	T	C	C	rs111845891		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71373834	71373834	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71588539	71588539	+	IGR	SNP	C	T	T	rs113377542	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	87118075	87118075	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107295367	107295367	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	119632958	119632958	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16347304	16347304	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	20094907	20094907	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34460201	34460201	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37935724	37935724	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38115159	38115159	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38423213	38423213	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	42389103	42389103	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	6379424	6379424	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8167718	8167718	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	87313517	87313517	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	93518354	93518354	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111623859	111623859	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73278125	73278125	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82264198	82264198	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19114379	19114379	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806673	19806673	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806905	19806905	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45333828	45333828	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	54704818	54704818	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22646862	22646862	+	IGR	DEL	C	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28752014	28752014	+	IGR	DEL	T	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	53229439	53229439	+	IGR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	58864007	58864007	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	64163014	64163014	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	72897293	72897293	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78190694	78190694	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84860709	84860709	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22628431	22628431	+	IGR	SNP	G	A	A	rs117932351	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	22680091	22680091	+	IGR	SNP	A	G	G	rs138904917	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32399415	32399415	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33500354	33500354	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65269749	65269749	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	82012881	82012881	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25410894	25410894	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11610459	11610459	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14992609	14992609	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	5002710	5002710	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15688229	15688229	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	28637022	28637022	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	50578546	50578546	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	111391083	111391083	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147313770	147313770	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157940626	157940626	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160579253	160579253	+	IGR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	162949430	162949430	+	IGR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163000234	163000234	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	16523710	16523710	+	IGR	DEL	C	-	-	rs34250654		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192959217	192959217	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208870919	208870919	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	211347112	211347112	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30378513	30378513	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	68841263	68841263	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74405329	74405330	+	IGR	DNP	CA	AG	AG			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79511401	79511401	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	825898	825898	+	IGR	SNP	C	A	A	rs75696223		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	95813162	95813163	+	IGR	DNP	CG	TT	TT	rs77352540	byFrequency;by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	16175994	16175994	+	IGR	DEL	A	-	-	rs67295920		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	37873901	37873902	+	IGR	INS	-	GAG	GAG	rs143020390	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122411	11122411	+	IGR	SNP	A	G	G	rs150035285	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11122863	11122863	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11123790	11123790	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14823958	14823958	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32114030	32114030	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350332	16350332	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16366230	16366230	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	49467031	49467031	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107009483	107009483	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	127592523	127592523	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128006815	128006815	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	131051891	131051891	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132369434	132369434	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132810415	132810415	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133019812	133019812	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426315	140426315	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	158236623	158236624	+	IGR	DNP	CA	TT	TT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162358212	162358212	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186049799	186049799	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	218625738	218625738	+	IGR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4072016	4072016	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4072018	4072018	+	IGR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60962057	60962057	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	740750	740750	+	IGR	SNP	G	C	C	rs145860406	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	75148533	75148533	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91927314	91927314	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	101353748	101353749	+	IGR	INS	-	GAG	GAG	rs137916672	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133948139	133948142	+	IGR	DEL	TCTC	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	143574847	143574847	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149702239	149702239	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	163789762	163789762	+	IGR	DEL	C	-	-	rs34717870		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	187504197	187504197	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36809732	36809732	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	48436195	48436195	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	54082402	54082402	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74922471	74922471	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76483620	76483620	+	IGR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100941	87100941	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	93585589	93585589	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96068413	96068413	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	10357249	10357249	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116965000	116965000	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13234449	13234450	+	IGR	DEL	AG	-	-	rs113530075		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137277469	137277469	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	140552085	140552085	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	146979393	146979393	+	IGR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154580709	154580709	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190588715	190588716	+	IGR	DEL	AG	-	-	rs67332528		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190653578	190653578	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83132434	83132434	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9405112	9405112	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	96827106	96827106	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	106531071	106531071	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108924101	108924101	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118988204	118988204	+	IGR	SNP	T	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303946	23303946	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	53155871	53155871	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92603281	92603282	+	IGR	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114670968	114670968	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19999743	19999744	+	IGR	INS	-	AG	AG	rs149720552	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29069086	29069086	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57524317	57524318	+	IGR	DEL	TC	-	-	rs148128430		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57977291	57977291	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58577983	58577983	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	58579727	58579727	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	7503344	7503344	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	78497284	78497284	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80777220	80777220	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492413	10492413	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144972778	144972778	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	15031310	15031310	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156242191	156242193	+	IGR	DEL	TGG	-	-	rs78544406		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	22642612	22642612	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	35615258	35615258	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48886076	48886076	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255373	53255373	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57880333	57880333	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61816910	61816910	+	IGR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61818012	61818012	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63029422	63029422	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64323789	64323789	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	8138933	8138933	+	IGR	DEL	A	-	-	rs140635721		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105747881	105747881	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12541928	12541928	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	12542017	12542017	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128622916	128622917	+	IGR	INS	-	CTT	CTT	rs137859716	by1000genomes	TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23340792	23340792	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	23728482	23728482	+	IGR	DEL	C	-	-	rs33956116		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47022118	47022118	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47348417	47348417	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	48076575	48076575	+	IGR	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	67897926	67897926	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	70041889	70041889	+	IGR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91575027	91575027	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	96892366	96892366	+	IGR	DEL	A	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103494549	103494549	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	122677768	122677768	+	IGR	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	128778069	128778069	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314184	43314184	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314335	43314335	+	IGR	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314349	43314349	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68401887	68401887	+	IGR	DEL	T	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68435857	68435857	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	91330589	91330589	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128236253	128236253	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137019864	137019864	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145075713	145075713	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146307338	146307338	+	IGR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	151694381	151694381	+	IGR	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37403254	37403254	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	43138796	43138796	+	IGR	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49430639	49430639	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	50831832	50831832	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	53869873	53869874	+	IGR	DNP	GG	TT	TT			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55425607	55425607	+	IGR	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57829913	57829913	+	IGR	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	61999022	61999022	+	IGR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64628280	64628280	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	84951966	84951967	+	IGR	INS	-	T	T	rs60581769		TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92644140	92644140	+	IGR	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VASH2	79805	broad.mit.edu	37	1	213162022	213162022	+	3'UTR	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6850673	6850673	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPRBP	9730	broad.mit.edu	37	3	51457540	51457540	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100160183	100160183	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR87	83889	broad.mit.edu	37	19	38378446	38378446	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFDC9	259240	broad.mit.edu	37	20	44237242	44237242	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT11	7481	broad.mit.edu	37	11	75902507	75902507	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF4	84272	broad.mit.edu	37	2	32530586	32530586	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF7	285525	broad.mit.edu	37	4	44653715	44653715	+	5'Flank	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YWHAB	7529	broad.mit.edu	37	20	43533815	43533815	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAP70	7535	broad.mit.edu	37	2	98351815	98351815	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12B	340554	broad.mit.edu	37	X	64722395	64722395	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47584916	47584916	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC11	79844	broad.mit.edu	37	5	822057	822057	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP37	7539	broad.mit.edu	37	9	115805895	115805895	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM2	23619	broad.mit.edu	37	19	57290619	57290619	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF180	7733	broad.mit.edu	37	19	44981416	44981416	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF182	7569	broad.mit.edu	37	X	47835972	47835972	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22256493	22256493	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152613062	152613062	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF317	57693	broad.mit.edu	37	19	9271573	9271573	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109691365	109691365	+	Silent	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF462	58499	broad.mit.edu	37	9	109736601	109736601	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF569	148266	broad.mit.edu	37	19	37905272	37905272	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF573	126231	broad.mit.edu	37	19	38294399	38294399	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF678	339500	broad.mit.edu	37	1	227884504	227884504	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF679	168417	broad.mit.edu	37	7	63726831	63726831	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF711	7552	broad.mit.edu	37	X	84526199	84526199	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	289266	289266	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780B	163131	broad.mit.edu	37	19	40556394	40556394	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23567627	23567627	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	24736355	24736355	+	RNA	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	31285956	31285956	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	49412616	49412616	+	3'UTR	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34812893	34812893	+	5'Flank	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76069662	76069662	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34980528	34980528	+	5'Flank	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34984590	34984590	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	5612504	5612504	+	Intron	DEL	G	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	69099645	69099645	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	40042586	40042586	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29898196	29898196	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	9806898	9806899	+	5'UTR	DNP	CC	AA	AA			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142637739	142637739	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142649163	142649163	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89319739	89319739	+	Intron	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89512946	89512946	+	RNA	SNP	C	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90121633	90121633	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	14789241	14789241	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85165504	85165504	+	Intron	SNP	A	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9933147	9933147	+	RNA	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142021059	142021059	+	Intron	SNP	T	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142161930	142161930	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142180906	142180906	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142242317	142242317	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471383	142471383	+	Intron	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	154862888	154862888	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63370613	63370613	+	Intron	DEL	A	-	-			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	7825392	7825392	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	108938158	108938158	+	Intron	SNP	G	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66456356	66456356	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66457653	66457653	+	5'Flank	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66464203	66464203	+	Intron	SNP	G	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66518014	66518014	+	Intron	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676960	84676960	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	7275	7275	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	7465	7465	+	5'Flank	SNP	A	G	G			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	103182655	103182655	+	Intron	SNP	C	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17177747	17177747	+	Intron	SNP	G	T	T			TCGA-17-Z010-01A-01W-0746-08	TCGA-17-Z010-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
