Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA8	10351	broad.mit.edu	37	17	66871443	66871443	+	Missense_Mutation	SNP	G	A	A	rs148489022	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	67004355	67004355	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169787351	169787351	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100605006	100605006	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABR	29	broad.mit.edu	37	17	970440	970440	+	Silent	SNP	G	A	A	rs142914400	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44069884	44069884	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44080126	44080126	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPL2	92370	broad.mit.edu	37	3	141011429	141011429	+	Silent	SNP	C	T	T	rs116687012	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20480912	20480912	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7709395	7709395	+	Silent	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY9	115	broad.mit.edu	37	16	4016932	4016932	+	Missense_Mutation	SNP	C	T	T	rs141519764	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH4	127	broad.mit.edu	37	4	100052703	100052703	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159343983	159343983	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236649636	236649636	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86278796	86278796	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33293523	33293523	+	Silent	SNP	G	A	A	rs144838103	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP9	10142	broad.mit.edu	37	7	91726960	91726960	+	Missense_Mutation	SNP	G	A	A	rs61757664	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3B2	222	broad.mit.edu	37	11	67434391	67434391	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29543605	29543605	+	Intron	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3745030	3745030	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73677116	73677116	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56184260	56184260	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMY2B	280	broad.mit.edu	37	1	104116920	104116920	+	Silent	SNP	C	T	T	rs12131520	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41525790	41525790	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKAR	150709	broad.mit.edu	37	2	190584478	190584478	+	Missense_Mutation	SNP	G	C	C	rs146913509	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKIB1	54467	broad.mit.edu	37	7	91981814	91981814	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112175508	112175508	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36362814	36362814	+	Silent	SNP	C	T	T	rs148987065		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP2	334	broad.mit.edu	37	11	129980466	129980466	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOA1BP	128240	broad.mit.edu	37	1	156562007	156562007	+	Intron	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21228305	21228305	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOH	350	broad.mit.edu	37	17	64219811	64219811	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72421641	72421641	+	Intron	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161029432	161029432	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128839217	128839217	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP33	115703	broad.mit.edu	37	19	36273336	36273336	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32621650	32621650	+	Missense_Mutation	SNP	G	A	A	rs148897080		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100880885	100880885	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176863786	176863786	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42492085	42492085	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B3	492	broad.mit.edu	37	X	152845701	152845701	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1C2	245973	broad.mit.edu	37	2	10918799	10918799	+	Intron	SNP	C	T	T	rs147144290	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9A	10079	broad.mit.edu	37	20	50273602	50273602	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28382010	28382010	+	Silent	SNP	T	C	C	rs142780118	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAG4	9530	broad.mit.edu	37	8	38065246	38065246	+	Missense_Mutation	SNP	C	G	G	rs150045830	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANF2	140836	broad.mit.edu	37	20	17705803	17705803	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31616491	31616491	+	Missense_Mutation	SNP	A	G	G	rs148812517		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156622617	156622617	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAT1	586	broad.mit.edu	37	12	24995032	24995032	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165547912	165547912	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70048924	70048924	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16436019	16436019	+	Missense_Mutation	SNP	C	T	T	rs142534651		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL2	254240	broad.mit.edu	37	22	32843317	32843317	+	Missense_Mutation	SNP	T	C	C	rs143287045	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140500244	140500244	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf11	55726	broad.mit.edu	37	12	27081688	27081688	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf32	83695	broad.mit.edu	37	12	2997368	2997368	+	Missense_Mutation	SNP	C	G	G	rs147840657	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf60	144608	broad.mit.edu	37	12	14976375	14976375	+	Missense_Mutation	SNP	C	T	T	rs149459242	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf26	122046	broad.mit.edu	37	13	31543068	31543068	+	Missense_Mutation	SNP	G	T	T	rs9533168	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf135	64430	broad.mit.edu	37	14	60574902	60574902	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf32	145858	broad.mit.edu	37	15	93015697	93015697	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf53	400359	broad.mit.edu	37	15	38988925	38988925	+	Silent	SNP	G	T	T	rs146995135	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30503188	30503188	+	Intron	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF3	114899	broad.mit.edu	37	5	34028882	34028882	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf25	81627	broad.mit.edu	37	1	185125793	185125793	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf31	25770	broad.mit.edu	37	22	29454777	29454777	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2	717	broad.mit.edu	37	6	31912787	31912787	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf24	27013	broad.mit.edu	37	2	220040963	220040963	+	Missense_Mutation	SNP	G	A	A	rs145875060	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf59	151963	broad.mit.edu	37	3	192635598	192635598	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf75	54859	broad.mit.edu	37	3	47539870	47539870	+	Missense_Mutation	SNP	T	C	C	rs149565751	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf33	133686	broad.mit.edu	37	5	36225683	36225683	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf46	340277	broad.mit.edu	37	7	23731172	23731172	+	Silent	SNP	C	T	T	rs148660873	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG7	59284	broad.mit.edu	37	19	54444851	54444851	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122054130	122054130	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK1D	57118	broad.mit.edu	37	10	12595329	12595329	+	Missense_Mutation	SNP	A	G	G	rs34194224	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN7	23473	broad.mit.edu	37	3	15265058	15265058	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP5	838	broad.mit.edu	37	11	104879560	104879560	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96079422	96079422	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAST	831	broad.mit.edu	37	5	96101822	96101822	+	Silent	SNP	C	T	T	rs61733809	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119169085	119169085	+	Missense_Mutation	SNP	G	A	A	rs146517083	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCBE1	147372	broad.mit.edu	37	18	57106955	57106955	+	Missense_Mutation	SNP	G	A	A	rs147681552		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC111	201973	broad.mit.edu	37	4	185615780	185615780	+	Missense_Mutation	SNP	T	G	G	rs150917934	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC112	153733	broad.mit.edu	37	5	114603623	114603623	+	Intron	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC18	343099	broad.mit.edu	37	1	93646450	93646450	+	Intron	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86133743	86133743	+	Missense_Mutation	SNP	C	T	T	rs144365306	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC93	54520	broad.mit.edu	37	2	118698860	118698860	+	Missense_Mutation	SNP	C	T	T	rs144153360	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL17	6361	broad.mit.edu	37	16	57449785	57449785	+	3'UTR	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNI	10983	broad.mit.edu	37	4	77976472	77976472	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCR6	1235	broad.mit.edu	37	6	167549961	167549961	+	Silent	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300E	342510	broad.mit.edu	37	17	72613315	72613315	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LF	146722	broad.mit.edu	37	17	72700795	72700795	+	Silent	SNP	G	A	A	rs144991054		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD80	941	broad.mit.edu	37	3	119276545	119276545	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD93	22918	broad.mit.edu	37	20	23065996	23065996	+	Silent	SNP	C	G	G	rs140700593	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149983368	149983368	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC23	8697	broad.mit.edu	37	5	137524733	137524733	+	Silent	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPA	8476	broad.mit.edu	37	1	227333373	227333373	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975242	21975242	+	Missense_Mutation	SNP	C	G	G	rs145189313	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95195803	95195804	+	Intron	DEL	AA	-	-	rs112170028		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19503202	19503202	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19591363	19591363	+	Intron	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25532324	25532324	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26915831	26915831	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK14	5218	broad.mit.edu	37	7	90585061	90585061	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL4	344387	broad.mit.edu	37	2	39406387	39406387	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18593605	18593605	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34855147	34855147	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49034266	49034266	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117232638	117232638	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP250	11190	broad.mit.edu	37	20	34091163	34091163	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP68	23177	broad.mit.edu	37	2	65296693	65296693	+	Missense_Mutation	SNP	G	C	C	rs138848385	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD3	1107	broad.mit.edu	37	17	7797875	7797875	+	Silent	SNP	T	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIC	23152	broad.mit.edu	37	19	42798319	42798319	+	Intron	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86959934	86959934	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIC4	25932	broad.mit.edu	37	1	25167433	25167433	+	3'UTR	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP3	25999	broad.mit.edu	37	19	36508569	36508569	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK4	57396	broad.mit.edu	37	5	178050348	178050348	+	Missense_Mutation	SNP	G	A	A	rs144043842	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19207455	19207455	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMA1	1215	broad.mit.edu	37	14	24975497	24975497	+	Intron	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150911747	150911747	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21545093	21545093	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT1	23019	broad.mit.edu	37	16	58568042	58568042	+	Intron	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COASY	80347	broad.mit.edu	37	17	40717048	40717048	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBLL1	22837	broad.mit.edu	37	2	165551184	165551184	+	Silent	SNP	C	T	T	rs76695941	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101767192	101767192	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107829971	107829971	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107400278	107400278	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPE	1363	broad.mit.edu	37	4	166416828	166416828	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211441119	211441119	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAT	1384	broad.mit.edu	37	9	131860363	131860363	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB3L3	84699	broad.mit.edu	37	19	4157105	4157105	+	Silent	SNP	C	G	G	rs143021454	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RA	1438	broad.mit.edu	37	X	1428423	1428423	+	3'UTR	SNP	G	A	A	rs143398916	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSZ	1522	broad.mit.edu	37	20	57572776	57572776	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17113512	17113512	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43192148	43192148	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWC15	51503	broad.mit.edu	37	11	94704179	94704179	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49052794	49052794	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35970091	35970091	+	Intron	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11A1	1583	broad.mit.edu	37	15	74635368	74635368	+	Missense_Mutation	SNP	C	T	T	rs6161	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A6	1548	broad.mit.edu	37	19	41352810	41352810	+	Missense_Mutation	SNP	G	T	T	rs147901382	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP8B1	1582	broad.mit.edu	37	3	42916001	42916001	+	Silent	SNP	G	T	T	rs138292874	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAOA	267012	broad.mit.edu	37	13	106118626	106118626	+	5'UTR	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	168014232	168014232	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1A	9937	broad.mit.edu	37	10	115609761	115609761	+	Missense_Mutation	SNP	C	T	T	rs34407062	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLRE1C	64421	broad.mit.edu	37	10	14976393	14976393	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCN	1634	broad.mit.edu	37	12	91558500	91558500	+	Intron	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53326488	53326488	+	Missense_Mutation	SNP	G	T	T	rs34229192	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53326592	53326592	+	Missense_Mutation	SNP	G	C	C	rs35988197	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDAH1	23576	broad.mit.edu	37	1	85983968	85983969	+	Intron	INS	-	TT	TT	rs146664901		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX26B	203522	broad.mit.edu	37	X	134681056	134681056	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169212925	169212925	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB136	613210	broad.mit.edu	37	8	11831566	11831566	+	Silent	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKH	160851	broad.mit.edu	37	13	42761201	42761201	+	Missense_Mutation	SNP	G	A	A	rs151042099		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLEC1	9940	broad.mit.edu	37	3	38158308	38158308	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35061024	35061024	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLK1	8788	broad.mit.edu	37	14	101200981	101200981	+	Silent	SNP	C	T	T	rs142868728	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21695523	21695523	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76424765	76424765	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20970576	20970576	+	Missense_Mutation	SNP	G	T	T	rs34121503	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13867953	13867953	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11795241	11795241	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA4	55466	broad.mit.edu	37	15	78572750	78572750	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB13	374407	broad.mit.edu	37	11	73675980	73675980	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT1	1786	broad.mit.edu	37	19	10277266	10277266	+	Intron	SNP	G	A	A	rs117294281	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25174610	25174610	+	Missense_Mutation	SNP	C	T	T	rs61732769	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83838852	83838852	+	Missense_Mutation	SNP	G	A	A	rs147987838	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD5	1816	broad.mit.edu	37	4	9784055	9784055	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG3	1830	broad.mit.edu	37	18	29056118	29056118	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46860094	46860094	+	Intron	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137802955	137802955	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA2R	60401	broad.mit.edu	37	X	65819703	65819703	+	Splice_Site	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHBP1	23301	broad.mit.edu	37	2	63175761	63175761	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHD3	30845	broad.mit.edu	37	2	31484432	31484432	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34783252	34783252	+	Missense_Mutation	SNP	C	T	T	rs147654123	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB42	2038	broad.mit.edu	37	15	43512963	43512963	+	Intron	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143096786	143096786	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8L3	79574	broad.mit.edu	37	1	110294292	110294292	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37868208	37868208	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETAA1	54465	broad.mit.edu	37	2	67629997	67629997	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164679	139164679	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89708899	89708899	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM151B	167555	broad.mit.edu	37	5	79817814	79817814	+	Intron	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30811121	30811121	+	Silent	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30825544	30825544	+	Missense_Mutation	SNP	C	A	A	rs75843887	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM194A	131831	broad.mit.edu	37	3	150398256	150398256	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47C	442444	broad.mit.edu	37	X	37028042	37028042	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24330931	24330931	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067563	190067563	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49212036	49212036	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29463953	29463953	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99061646	99061646	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126370186	126370186	+	Missense_Mutation	SNP	A	T	T	rs138655269	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45927207	45927207	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48808375	48808375	+	Intron	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127668685	127668685	+	Missense_Mutation	SNP	G	T	T	rs78727187	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127697462	127697462	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147774426	147774426	+	Silent	SNP	T	C	C	rs77480566	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF21	26291	broad.mit.edu	37	19	49261199	49261199	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152329506	152329506	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152275372	152275372	+	Missense_Mutation	SNP	C	T	T	rs149094882		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216232721	216232721	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159652943	159652943	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXM1	2305	broad.mit.edu	37	12	2968544	2968544	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190875086	190875086	+	Intron	DEL	G	-	-			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71319487	71319487	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR2	9568	broad.mit.edu	37	9	101216455	101216455	+	Silent	SNP	G	A	A	rs151275459	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46390697	46390697	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580356	161580356	+	Silent	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26559611	26559611	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA4	2626	broad.mit.edu	37	8	11614467	11614467	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153788945	153788945	+	Silent	SNP	G	A	A	rs140272058	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155209714	155209714	+	Silent	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA	2629	broad.mit.edu	37	1	155210414	155210414	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHSR	2693	broad.mit.edu	37	3	172165646	172165646	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIT2	9815	broad.mit.edu	37	12	110376292	110376292	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA5	2702	broad.mit.edu	37	1	147231026	147231026	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GKN1	56287	broad.mit.edu	37	2	69204787	69204787	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLG1	2734	broad.mit.edu	37	16	74566055	74566055	+	Intron	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57864766	57864766	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9765330	9765330	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMDS	2762	broad.mit.edu	37	6	1960101	1960101	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNL1	2794	broad.mit.edu	37	6	30514577	30514577	+	Missense_Mutation	SNP	G	A	A	rs141407258	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135429475	135429475	+	Missense_Mutation	SNP	A	T	T	rs143441217	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR137B	7107	broad.mit.edu	37	1	236341783	236341783	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25861798	25861798	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89949519	89949519	+	Silent	SNP	C	T	T	rs35254354		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123480927	123480927	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123480977	123480977	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11770205	11770205	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102483232	102483232	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780384	88780384	+	Silent	SNP	T	G	G	rs76850190	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM6	2916	broad.mit.edu	37	5	178408747	178408747	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2E1	2960	broad.mit.edu	37	3	120469649	120469649	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108619318	108619318	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS1	2997	broad.mit.edu	37	19	49486081	49486081	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS5	23354	broad.mit.edu	37	19	36110349	36110349	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156456833	156456833	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58120943	58120943	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD1	25831	broad.mit.edu	37	14	31642585	31642585	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43540857	43540857	+	Silent	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPHL1	341208	broad.mit.edu	37	11	93822102	93822102	+	Silent	SNP	C	T	T	rs116956001	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL2	79802	broad.mit.edu	37	1	222717463	222717463	+	Silent	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRIP3	8479	broad.mit.edu	37	16	30006859	30006859	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1C	3006	broad.mit.edu	37	6	26056117	26056117	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H3D	8351	broad.mit.edu	37	6	26197482	26197482	+	5'UTR	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2AC	8338	broad.mit.edu	37	1	149858798	149858798	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DOA	3111	broad.mit.edu	37	6	32975163	32975163	+	Missense_Mutation	SNP	C	T	T	rs142562508	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQB2	3120	broad.mit.edu	37	6	32734054	32734055	+	5'Flank	DEL	CT	-	-	rs145825987		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185951496	185951496	+	Missense_Mutation	SNP	G	T	T	rs140928144	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNMT	3176	broad.mit.edu	37	2	138762712	138762712	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA1	3198	broad.mit.edu	37	7	27134293	27134293	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC4	3221	broad.mit.edu	37	12	54448008	54448008	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26147170	26147171	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B3	3293	broad.mit.edu	37	9	99003133	99003133	+	Silent	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSDL1	83693	broad.mit.edu	37	16	84164008	84164008	+	Silent	SNP	G	A	A	rs34611937	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPH1	10808	broad.mit.edu	37	13	31725284	31725284	+	Missense_Mutation	SNP	G	C	C	rs146776431		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYAL4	23553	broad.mit.edu	37	7	123516947	123516947	+	Missense_Mutation	SNP	C	T	T	rs141828412	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ID3	3399	broad.mit.edu	37	1	23885479	23885479	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17B	27190	broad.mit.edu	37	5	148756389	148756389	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166896326	166896326	+	Silent	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPW	3653	broad.mit.edu	37	15	25417853	25417853	+	Intron	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121507287	121507287	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK3	11213	broad.mit.edu	37	12	66639014	66639014	+	Missense_Mutation	SNP	G	A	A	rs140671957		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15714695	15714695	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37523101	37523101	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH1	3697	broad.mit.edu	37	3	52812964	52812964	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26709168	26709168	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021039	5021039	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA5	3741	broad.mit.edu	37	12	5153883	5153883	+	Silent	SNP	C	T	T	rs12720444	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK17	89822	broad.mit.edu	37	6	39272299	39272299	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138648751	138648751	+	Silent	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3A	55818	broad.mit.edu	37	2	86697482	86697482	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0355	9710	broad.mit.edu	37	19	34843565	34843565	+	Missense_Mutation	SNP	A	G	G	rs142397202		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0494	9813	broad.mit.edu	37	1	47162324	47162324	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0586	9786	broad.mit.edu	37	14	58955530	58955530	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0652	9776	broad.mit.edu	37	11	46685569	46685569	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1009	22832	broad.mit.edu	37	6	84862623	84862623	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43440212	43440212	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43496539	43496539	+	Missense_Mutation	SNP	G	A	A	rs78339727	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5969196	5969196	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137519240	137519240	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154394493	154394493	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126736485	126736486	+	Intron	INS	-	T	T	rs149141190	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL4	56062	broad.mit.edu	37	X	86887276	86887276	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51330971	51330971	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPRP	448834	broad.mit.edu	37	1	152732787	152732787	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT10	3858	broad.mit.edu	37	17	38978823	38978823	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAIR1	3903	broad.mit.edu	37	19	54868141	54868141	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7014035	7014035	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7015759	7015759	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	875638	875638	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36997785	36997785	+	Silent	SNP	G	A	A	rs150948020	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDLRAD2	401944	broad.mit.edu	37	1	22150788	22150788	+	3'UTR	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDOC1	23641	broad.mit.edu	37	X	140270979	140270979	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71947005	71947005	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54802136	54802136	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO4	339398	broad.mit.edu	37	1	151773964	151773964	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LLPH	84298	broad.mit.edu	37	12	66522855	66522855	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR1	1902	broad.mit.edu	37	9	113704059	113704059	+	Silent	SNP	C	T	T	rs41279057	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141116420	141116420	+	Missense_Mutation	SNP	C	T	T	rs150879175	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC27	80313	broad.mit.edu	37	10	134165171	134165171	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70484411	70484411	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70505059	70505059	+	Silent	SNP	C	T	T	rs149679977	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRCC1	85444	broad.mit.edu	37	8	86050664	86050664	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP1	9208	broad.mit.edu	37	2	238664729	238664729	+	Intron	SNP	C	G	G	rs56219042	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85517881	85517881	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ3	127255	broad.mit.edu	37	1	74507233	74507233	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB6	158809	broad.mit.edu	37	X	26212459	26212459	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140992863	140992863	+	Splice_Site	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140994329	140994329	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML3	55534	broad.mit.edu	37	4	140810914	140810914	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANEA	79694	broad.mit.edu	37	6	96054073	96054073	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10417436	10417436	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84118642	84118642	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84132690	84132690	+	Missense_Mutation	SNP	C	T	T	rs148577579	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDC1	9656	broad.mit.edu	37	6	30679197	30679197	+	Missense_Mutation	SNP	T	C	C	rs145055079	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141734094	141734094	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT4C	25834	broad.mit.edu	37	12	86373796	86373796	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALCL	84953	broad.mit.edu	37	11	12379966	12379966	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINA	84864	broad.mit.edu	37	3	97686208	97686208	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41958884	41958884	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL3	11222	broad.mit.edu	37	3	131190061	131190061	+	Missense_Mutation	SNP	T	C	C	rs150805631		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR4	9110	broad.mit.edu	37	17	56573255	56573255	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1A	4543	broad.mit.edu	37	4	187455099	187455099	+	Missense_Mutation	SNP	G	T	T	rs28383652	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1B	4544	broad.mit.edu	37	11	92714636	92714636	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9019331	9019331	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061146	9061146	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061229	9061229	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9061841	9061841	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067106	9067106	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3240577	3240577	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77732063	77732063	+	Intron	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108158716	108158716	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26422651	26422651	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171248951	171248951	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76602282	76602282	+	Silent	SNP	G	A	A	rs55905349	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128366421	128366421	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYPN	84665	broad.mit.edu	37	10	69881880	69881880	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1893099	1893099	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L2	4674	broad.mit.edu	37	X	72433014	72433014	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35733361	35733361	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCK1	4690	broad.mit.edu	37	3	136664801	136664801	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	55992224	55992224	+	Intron	SNP	G	C	C	rs78005374	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29885403	29885403	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27062401	27062401	+	Intron	SNP	C	T	T	rs11649957		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NES	10763	broad.mit.edu	37	1	156640981	156640981	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NET1	10276	broad.mit.edu	37	10	5498572	5498572	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236142361	236142361	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247587649	247587649	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD1	10392	broad.mit.edu	37	7	30491863	30491863	+	Silent	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120430441	120430441	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAT	4863	broad.mit.edu	37	11	108047778	108047778	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115389448	115389448	+	Missense_Mutation	SNP	C	T	T	rs2286734		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84498358	84498358	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD3	23386	broad.mit.edu	37	7	44432049	44432049	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210	23225	broad.mit.edu	37	3	13418947	13418947	+	Intron	SNP	G	C	C	rs62232830		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF5	55998	broad.mit.edu	37	X	101092485	101092485	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228487066	228487066	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSL1	23363	broad.mit.edu	37	2	220427250	220427250	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123657346	123657346	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167576513	167576514	+	Intron	INS	-	G	G	rs143093732	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167630824	167630824	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN3	23596	broad.mit.edu	37	1	241757786	241757786	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN4	94233	broad.mit.edu	37	10	88419700	88419700	+	Missense_Mutation	SNP	G	T	T	rs145634412	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13D1	286365	broad.mit.edu	37	9	107457527	107457527	+	Silent	SNP	G	A	A	rs148110858		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13F1	138805	broad.mit.edu	37	9	107267284	107267284	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F1	4992	broad.mit.edu	37	16	3254810	3254810	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1N2	138882	broad.mit.edu	37	9	125316032	125316032	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D5	219875	broad.mit.edu	37	11	123810376	123810376	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A4	401666	broad.mit.edu	37	11	4968172	4968172	+	Silent	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185153	56185153	+	Missense_Mutation	SNP	C	T	T	rs61901985	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185651	56185651	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158669912	158669912	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158746557	158746557	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K5	219453	broad.mit.edu	37	11	55927704	55927704	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117094123	117094123	+	Missense_Mutation	SNP	A	T	T	rs147741369	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGEP	55644	broad.mit.edu	37	14	20916076	20916076	+	Silent	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSGIN1	29948	broad.mit.edu	37	16	83984410	83984411	+	Intron	DEL	GT	-	-	rs72371417		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HTM	54681	broad.mit.edu	37	3	49039984	49039984	+	Missense_Mutation	SNP	A	G	G	rs140290144	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALMD	54873	broad.mit.edu	37	1	100133241	100133241	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAN3	255967	broad.mit.edu	37	13	28830443	28830443	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP2	10038	broad.mit.edu	37	14	20820502	20820502	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP9	83666	broad.mit.edu	37	3	122255087	122255087	+	Nonsense_Mutation	SNP	G	A	A	rs77625852		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBRM1	55193	broad.mit.edu	37	3	52682408	52682408	+	Silent	SNP	G	A	A	rs148664439	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164815883	164815883	+	Silent	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH12	51294	broad.mit.edu	37	5	141325298	141325298	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58208879	58208879	+	Missense_Mutation	SNP	G	T	T	rs150039929	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215307	140215307	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140772822	140772822	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB4	8641	broad.mit.edu	37	5	140768876	140768876	+	Silent	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82545269	82545269	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47831327	47831327	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71575490	71575490	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105178380	105178380	+	Missense_Mutation	SNP	G	A	A	rs61751510	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHX	8050	broad.mit.edu	37	11	35016541	35016541	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM1	9124	broad.mit.edu	37	10	97031411	97031411	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	32088391	32088391	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD3	79849	broad.mit.edu	37	11	119059200	119059200	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5L	51555	broad.mit.edu	37	3	179592167	179592167	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129793163	129793163	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118516232	118516232	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGC	5279	broad.mit.edu	37	1	172411045	172411045	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17172206	17172206	+	Intron	SNP	T	A	A	rs68074956		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP	5304	broad.mit.edu	37	7	142836663	142836663	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130851740	130851740	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKN3	29941	broad.mit.edu	37	9	131475832	131475832	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8528207	8528208	+	Intron	DEL	TA	-	-	rs11467327		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD2	257068	broad.mit.edu	37	3	111427038	111427038	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144993230	144993230	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4512578	4512578	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20335869	20335869	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94613883	94613883	+	Missense_Mutation	SNP	A	G	G	rs114758530	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLDC1	154197	broad.mit.edu	37	6	160222219	160222219	+	Splice_Site	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55873404	55873404	+	Silent	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU3F4	5456	broad.mit.edu	37	X	82763633	82763633	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76809396	76809396	+	Missense_Mutation	SNP	G	A	A	rs61756411	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94540452	94540452	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R9A	55607	broad.mit.edu	37	7	94540565	94540565	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R5C	5527	broad.mit.edu	37	14	102276305	102276305	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76062159	76062159	+	Missense_Mutation	SNP	C	A	A	rs142544216	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT7	54496	broad.mit.edu	37	16	68381128	68381128	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68873421	68873421	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214171034	214171034	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPS2	5634	broad.mit.edu	37	X	12828224	12828224	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43702144	43702144	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43690508	43690508	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC1	5700	broad.mit.edu	37	14	90725526	90725526	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC3IP	29893	broad.mit.edu	37	17	40726186	40726186	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN12	5782	broad.mit.edu	37	7	77256749	77256749	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70949014	70949014	+	Missense_Mutation	SNP	G	A	A	rs61758735	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8460493	8460493	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8518415	8518415	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48186000	48186000	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGM	5837	broad.mit.edu	37	11	64527201	64527201	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9317723	9317723	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL2B	11158	broad.mit.edu	37	22	51208446	51208446	+	Splice_Site	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17699262	17699262	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130791482	130791482	+	Intron	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA1	5921	broad.mit.edu	37	5	86672799	86672799	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGEF1B	153020	broad.mit.edu	37	4	82367000	82367000	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF4	83937	broad.mit.edu	37	10	45480383	45480383	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM6	10180	broad.mit.edu	37	3	50009498	50009498	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG4	83998	broad.mit.edu	37	1	120337310	120337310	+	Intron	SNP	T	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS3	5998	broad.mit.edu	37	9	116346507	116346507	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDL3	162494	broad.mit.edu	37	17	30648080	30648080	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RICTOR	253260	broad.mit.edu	37	5	38959337	38959337	+	Missense_Mutation	SNP	G	C	C	rs61753520	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40503653	40503653	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31511132	31511132	+	Intron	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF111	54778	broad.mit.edu	37	15	59377888	59377888	+	Silent	SNP	A	G	G	rs76979606	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF175	285533	broad.mit.edu	37	4	154641373	154641373	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78318746	78318746	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF213	57674	broad.mit.edu	37	17	78319311	78319311	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNPEP	6051	broad.mit.edu	37	1	201958634	201958634	+	Silent	SNP	C	T	T	rs147777734	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUSC1	23623	broad.mit.edu	37	1	155291648	155291648	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237756780	237756780	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237886504	237886504	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A3	6274	broad.mit.edu	37	1	153520845	153520845	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCARF2	91179	broad.mit.edu	37	22	20781765	20781765	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCD5	79966	broad.mit.edu	37	4	83601861	83601861	+	Missense_Mutation	SNP	T	C	C	rs145164872	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144890953	144890953	+	Silent	SNP	A	G	G	rs111919660	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR16C5	195814	broad.mit.edu	37	8	57228594	57228594	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139371657	139371657	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91972334	91972334	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84644447	84644447	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48054097	48054099	+	Intron	DEL	AAG	-	-	rs149404019		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPHS1	22929	broad.mit.edu	37	10	13375926	13375926	+	Missense_Mutation	SNP	C	T	T	rs149225659	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERINC1	57515	broad.mit.edu	37	6	122774962	122774962	+	Missense_Mutation	SNP	G	A	A	rs142096149	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB4	6318	broad.mit.edu	37	18	61310821	61310821	+	5'UTR	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB6	5269	broad.mit.edu	37	6	2949198	2949198	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE1	5054	broad.mit.edu	37	7	100771789	100771789	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS3	6428	broad.mit.edu	37	6	36568950	36568950	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS8	6433	broad.mit.edu	37	12	132199433	132199434	+	Missense_Mutation	DNP	CT	AC	AC			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN3	81855	broad.mit.edu	37	10	102798400	102798400	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGSM2	9905	broad.mit.edu	37	17	2246847	2246847	+	Silent	SNP	A	G	G	rs138672949	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX2	6474	broad.mit.edu	37	3	157815867	157815867	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146264574	146264574	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM1	134549	broad.mit.edu	37	5	132159971	132159971	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIDT2	51092	broad.mit.edu	37	11	117052829	117052829	+	Intron	SNP	C	G	G	rs139036118	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L2	57568	broad.mit.edu	37	1	232607217	232607217	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRT4	23409	broad.mit.edu	37	12	120750374	120750374	+	Missense_Mutation	SNP	G	A	A	rs150394622	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164710118	164710118	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A3	151295	broad.mit.edu	37	2	220026772	220026772	+	Silent	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A46	91137	broad.mit.edu	37	5	110091158	110091159	+	Intron	DNP	GT	TG	TG			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140080194	140080194	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A4	2542	broad.mit.edu	37	11	118895962	118895962	+	Silent	SNP	G	A	A	rs61730035	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57175355	57175355	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A2	57153	broad.mit.edu	37	19	10748382	10748382	+	Missense_Mutation	SNP	G	C	C	rs142741358	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A1	55244	broad.mit.edu	37	17	19474875	19474875	+	Missense_Mutation	SNP	C	T	T	rs111653425	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A10	57282	broad.mit.edu	37	2	162751233	162751233	+	Silent	SNP	G	A	A	rs61748241		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1AP	22950	broad.mit.edu	37	2	27887160	27887160	+	Missense_Mutation	SNP	C	T	T	rs9679004	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A15	55117	broad.mit.edu	37	12	85279344	85279344	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143043068	143043069	+	Intron	INS	-	G	G	rs141754500	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143397949	143397950	+	Intron	INS	-	A	A	rs140034677	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1B3	28234	broad.mit.edu	37	12	21032563	21032563	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74907574	74907574	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN11	91607	broad.mit.edu	37	17	33690266	33690266	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC2	10592	broad.mit.edu	37	9	106860779	106860779	+	Missense_Mutation	SNP	A	C	C	rs61755310	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231067349	231067349	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16261546	16261546	+	Silent	SNP	C	T	T	rs111293962	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK4	27290	broad.mit.edu	37	9	33248451	33248451	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158622358	158622358	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627405	158627405	+	Silent	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13098266	13098266	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK2	6733	broad.mit.edu	37	7	104782689	104782689	+	Missense_Mutation	SNP	T	G	G	rs55743527		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT2	6773	broad.mit.edu	37	12	56742722	56742722	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STEAP2	261729	broad.mit.edu	37	7	89856779	89856779	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C2	6819	broad.mit.edu	37	2	108922030	108922030	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93636989	93636989	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNPO	11346	broad.mit.edu	37	5	150028398	150028398	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF3	83860	broad.mit.edu	37	10	7866437	7866437	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TANC2	26115	broad.mit.edu	37	17	61493196	61493197	+	Intron	INS	-	T	T	rs147536574	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK3	51347	broad.mit.edu	37	12	118627674	118627674	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D9	23158	broad.mit.edu	37	4	141583238	141583238	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL1XR1	79718	broad.mit.edu	37	3	176744032	176744032	+	Intron	DEL	A	-	-	rs112275760		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBRG4	9238	broad.mit.edu	37	7	45148653	45148653	+	Silent	SNP	G	T	T	rs11541073	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85457788	85457788	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX1	6899	broad.mit.edu	37	22	19751721	19751721	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79282266	79282266	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCIRG1	10312	broad.mit.edu	37	11	67815003	67815003	+	Silent	SNP	G	A	A	rs147119709		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP11	6954	broad.mit.edu	37	6	35088271	35088271	+	Missense_Mutation	SNP	T	C	C	rs62404564	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX13A	56157	broad.mit.edu	37	X	104463680	104463680	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10414100	10414100	+	Intron	DEL	A	-	-	rs111343501		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2320589	2320589	+	Silent	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGOLN2	10618	broad.mit.edu	37	2	85554057	85554057	+	Silent	SNP	G	T	T	rs137902012	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS3	7059	broad.mit.edu	37	1	155167915	155167915	+	Missense_Mutation	SNP	G	A	A	rs149484793	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC5	8563	broad.mit.edu	37	22	29915087	29915087	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD4	201798	broad.mit.edu	37	4	153691222	153691222	+	Missense_Mutation	SNP	G	A	A	rs149761550	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15427115	15427115	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM26	219623	broad.mit.edu	37	10	63170221	63170221	+	Silent	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68691516	68691516	+	Nonsense_Mutation	SNP	A	T	T	rs145154073		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19687506	19687506	+	Silent	SNP	G	A	A	rs148711749	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS1BP1	85456	broad.mit.edu	37	11	57077132	57077132	+	Missense_Mutation	SNP	C	T	T	rs149470322	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40660763	40660763	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40662984	40662984	+	Missense_Mutation	SNP	G	C	C	rs143708410	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32035615	32035615	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOMM40L	84134	broad.mit.edu	37	1	161198297	161198297	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP2	163590	broad.mit.edu	37	1	179833929	179833929	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59739471	59739471	+	Intron	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579356	7579356	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPBG	7162	broad.mit.edu	37	6	83075447	83075447	+	Silent	SNP	C	T	T	rs141575389	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAIP	10293	broad.mit.edu	37	3	49881339	49881339	+	Silent	SNP	C	T	T	rs145932323	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC6A	79090	broad.mit.edu	37	19	45668167	45668167	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141407834	141407834	+	Missense_Mutation	SNP	G	A	A	rs143778652	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML4	285852	broad.mit.edu	37	6	41196603	41196603	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM43	129868	broad.mit.edu	37	2	96261982	96261982	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM63	84676	broad.mit.edu	37	1	26384907	26384907	+	Missense_Mutation	SNP	C	T	T	rs61749355	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP12	9320	broad.mit.edu	37	2	230724018	230724018	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROAP	10024	broad.mit.edu	37	12	49723166	49723166	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31330378	31330378	+	Intron	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM2	7226	broad.mit.edu	37	21	45860714	45860714	+	Missense_Mutation	SNP	G	T	T	rs45578242	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81610007	81610007	+	Silent	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768675	31768675	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31768683	31768683	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSKS	60385	broad.mit.edu	37	19	50265430	50265430	+	Missense_Mutation	SNP	G	A	A	rs148077032	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL6	388951	broad.mit.edu	37	2	54483229	54483229	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSSC1	7260	broad.mit.edu	37	2	3341780	3341780	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC13	79573	broad.mit.edu	37	1	231052000	231052000	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC7A	57217	broad.mit.edu	37	2	47273468	47273468	+	Missense_Mutation	SNP	A	G	G	rs139010200	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF1	7270	broad.mit.edu	37	9	135275495	135275495	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179421791	179421791	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179599524	179599524	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154213988	154213988	+	Splice_Site	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D4	51619	broad.mit.edu	37	7	43988239	43988239	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D4	51619	broad.mit.edu	37	7	43988284	43988284	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170938271	170938271	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991312	158991312	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158991346	158991346	+	Missense_Mutation	SNP	C	T	T	rs144945330	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB1	9875	broad.mit.edu	37	21	33749574	33749574	+	Intron	SNP	G	A	A	rs111772913		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229771573	229771573	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USHBP1	83878	broad.mit.edu	37	19	17367497	17367497	+	Missense_Mutation	SNP	G	C	C	rs112158497		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP19	10869	broad.mit.edu	37	3	49151713	49151713	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55600058	55600058	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP42	84132	broad.mit.edu	37	7	6187422	6187422	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	24172207	24172208	+	IGR	INS	-	A	A	rs147106270	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902030	247902030	+	IGR	SNP	G	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40250608	40250608	+	IGR	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118460016	118460017	+	IGR	DEL	AG	-	-	rs79518702		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84105250	84105252	+	IGR	DEL	GGC	-	-	rs151101236		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	137154488	137154488	+	IGR	DEL	G	-	-	rs149952047		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190678249	190678249	+	IGR	DEL	T	-	-	rs33920189		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190894272	190894273	+	IGR	DEL	AT	-	-			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	26050686	26050687	+	IGR	INS	-	A	A	rs138206723	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	15160773	15160773	+	IGR	DEL	A	-	-			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57597040	57597040	+	IGR	DEL	T	-	-	rs75401139		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL1	81839	broad.mit.edu	37	1	116206407	116206407	+	Silent	SNP	C	T	T	rs41275546	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL2	57216	broad.mit.edu	37	1	160394996	160394996	+	Missense_Mutation	SNP	A	C	C	rs143298058		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIL1	7429	broad.mit.edu	37	2	219294119	219294119	+	Missense_Mutation	SNP	A	C	C	rs142981830	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VN1R4	317703	broad.mit.edu	37	19	53770098	53770098	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100844858	100844858	+	Missense_Mutation	SNP	C	T	T	rs149842139	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150082663	150082663	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR33	55339	broad.mit.edu	37	2	128482627	128482627	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37392168	37392168	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR3	150165	broad.mit.edu	37	22	17280787	17280787	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183454623	183454623	+	Intron	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB25	7597	broad.mit.edu	37	14	64954703	64954703	+	Silent	SNP	C	T	T	rs147617886	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7B	51043	broad.mit.edu	37	1	154988743	154988743	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72827874	72827874	+	Missense_Mutation	SNP	T	C	C	rs142939235	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72830425	72830425	+	Silent	SNP	C	T	T	rs148383343	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM3	9203	broad.mit.edu	37	X	70468873	70468873	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF133	7692	broad.mit.edu	37	20	18296557	18296557	+	Silent	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF136	7695	broad.mit.edu	37	19	12297520	12297520	+	Missense_Mutation	SNP	A	C	C	rs142957711	byFrequency	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF155	7711	broad.mit.edu	37	19	44501276	44501276	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF239	8187	broad.mit.edu	37	10	44053339	44053339	+	Silent	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271442	22271442	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF267	10308	broad.mit.edu	37	16	31926648	31926648	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280D	54816	broad.mit.edu	37	15	56970977	56970977	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF300	91975	broad.mit.edu	37	5	150276377	150276377	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF460	10794	broad.mit.edu	37	19	57802180	57802180	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF518B	85460	broad.mit.edu	37	4	10447910	10447910	+	Missense_Mutation	SNP	C	T	T	rs138947344		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF578	147660	broad.mit.edu	37	19	53005109	53005109	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585A	199704	broad.mit.edu	37	19	37644311	37644311	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF585B	92285	broad.mit.edu	37	19	37677490	37677490	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF608	57507	broad.mit.edu	37	5	123985341	123985341	+	Silent	SNP	G	A	A	rs144612616	byFrequency;by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91405078	91405078	+	Silent	SNP	T	G	G	rs142729817		TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF665	79788	broad.mit.edu	37	19	53668524	53668524	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF669	79862	broad.mit.edu	37	1	247264334	247264334	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF709	163051	broad.mit.edu	37	19	12575953	12575953	+	Silent	SNP	G	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF780A	284323	broad.mit.edu	37	19	40581044	40581044	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130191113	130191113	+	Silent	SNP	C	T	T	rs150837443	by1000genomes	TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23545307	23545307	+	Silent	SNP	T	C	C			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22237192	22237192	+	Intron	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22362994	22362994	+	Intron	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028575	142028575	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142206572	142206572	+	Intron	SNP	G	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142423547	142423547	+	Intron	SNP	C	T	T			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48159062	48159062	+	Intron	SNP	C	A	A			TCGA-17-Z012-01A-01W-0746-08	TCGA-17-Z012-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
