Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
PTPRC	5788	broad.mit.edu	36	1	196964122	196964122	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	196964122	196964122	PTPRC	1	C	C	T	25
PCDH15	65217	broad.mit.edu	36	10	55236635	55236635	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55236635	55236635	PCDH15	10	G	G	C	48
OR52I1	390037	broad.mit.edu	36	11	4572239	4572239	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4572239	4572239	OR52I1	11	A	A	G	3
LRRK2	120892	broad.mit.edu	36	12	39002427	39002427	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39002427	39002427	LRRK2	12	C	C	T	32
RBM19	9904	broad.mit.edu	36	12	112859282	112859282	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112859282	112859282	RBM19	12	C	C	T	19
TCTN2	79867	broad.mit.edu	36	12	122745445	122745445	+	Silent	SNP	T	T	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	122745445	122745445	TCTN2	12	T	T	A	64
PIBF1	10464	broad.mit.edu	36	13	72326219	72326219	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72326219	72326219	PIBF1	13	A	A	G	4
C14orf159	80017	broad.mit.edu	36	14	90760915	90760915	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	90760915	90760915	C14orf159	14	C	C	T	21
MTMR10	54893	broad.mit.edu	36	15	29038406	29038406	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29038406	29038406	MTMR10	15	C	C	T	31
MAPK6	5597	broad.mit.edu	36	15	50143789	50143789	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50143789	50143789	MAPK6	15	A	A	C	3
SV2B	9899	broad.mit.edu	36	15	89610891	89610891	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89610891	89610891	SV2B	15	C	C	T	27
DNAH3	55567	broad.mit.edu	36	16	20988398	20988398	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20988398	20988398	DNAH3	16	T	T	A	52
TP53	7157	broad.mit.edu	36	17	7518263	7518263	+	Missense_Mutation	SNP	C	C	T	rs11540652	byHapMap	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518263	7518263	TP53	17	C	C	T	23
GSDMB	55876	broad.mit.edu	36	17	35327063	35327063	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	35327063	35327063	GSDMB	17	A	A	G	5
NACA2	342538	broad.mit.edu	36	17	57023095	57023095	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57023095	57023095	NACA2	17	G	G	A	40
SLC25A19	60386	broad.mit.edu	36	17	70791212	70791212	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	70791212	70791212	SLC25A19	17	G	G	A	39
PQLC1	80148	broad.mit.edu	36	18	75811712	75811712	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	75811712	75811712	PQLC1	18	C	C	T	21
NDUFS7	374291	broad.mit.edu	36	19	1341968	1341969	+	Missense_Mutation	DNP	CT	CT	GG	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	1341968	1341969	NDUFS7	19	CT	CT	GG	32
SMARCA4	6597	broad.mit.edu	36	19	10979635	10979635	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10979635	10979635	SMARCA4	19	A	A	G	9
CRTC1	23373	broad.mit.edu	36	19	18747579	18747579	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	18747579	18747579	CRTC1	19	G	G	A	38
ZNF180	7733	broad.mit.edu	36	19	49672811	49672811	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	49672811	49672811	ZNF180	19	G	G	A	39
TEAD2	8463	broad.mit.edu	36	19	54554517	54554517	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54554517	54554517	TEAD2	19	C	C	T	31
CGREF1	10669	broad.mit.edu	36	2	27178469	27178469	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	27178469	27178469	CGREF1	2	C	C	T	23
LTBP1	4052	broad.mit.edu	36	2	33213407	33213407	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	33213407	33213407	LTBP1	2	C	C	T	25
HEATR5B	54497	broad.mit.edu	36	2	37081236	37081236	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37081236	37081236	HEATR5B	2	G	G	T	44
FANCL	55120	broad.mit.edu	36	2	58302626	58302626	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	58302626	58302626	FANCL	2	A	A	G	9
POU3F3	5455	broad.mit.edu	36	2	104839468	104839468	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	104839468	104839468	POU3F3	2	G	G	A	38
ZC3H6	376940	broad.mit.edu	36	2	112806178	112806178	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112806178	112806178	ZC3H6	2	C	C	T	29
DPP10	57628	broad.mit.edu	36	2	116227271	116227271	+	Silent	SNP	A	A	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	116227271	116227271	DPP10	2	A	A	T	13
TTC21B	79809	broad.mit.edu	36	2	166505814	166505814	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	166505814	166505814	TTC21B	2	C	C	A	30
GLB1L	79411	broad.mit.edu	36	2	219812746	219812746	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	219812746	219812746	GLB1L	2	G	G	A	42
MN1	4330	broad.mit.edu	36	22	26526333	26526333	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26526333	26526333	MN1	22	G	G	A	42
EIF4ENIF1	56478	broad.mit.edu	36	22	30165896	30165896	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	30165896	30165896	EIF4ENIF1	22	G	G	A	45
EIF4ENIF1	56478	broad.mit.edu	36	22	30165994	30165994	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30165994	30165994	EIF4ENIF1	22	G	G	A	37
FLJ10213	55096	broad.mit.edu	36	3	73194204	73194204	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	73194204	73194204	FLJ10213	3	A	A	G	2
OTOP1	133060	broad.mit.edu	36	4	4250428	4250428	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	4250428	4250428	OTOP1	4	G	G	A	37
MAN2B2	23324	broad.mit.edu	36	4	6645974	6645974	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6645974	6645974	MAN2B2	4	C	C	G	22
LNX1	84708	broad.mit.edu	36	4	54118881	54118881	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	54118881	54118881	LNX1	4	C	C	T	27
DDIT4L	115265	broad.mit.edu	36	4	101327861	101327861	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101327861	101327861	DDIT4L	4	G	G	A	41
TSSK1B	83942	broad.mit.edu	36	5	112797741	112797741	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112797741	112797741	TSSK1B	5	C	C	T	27
PCDHA4	56144	broad.mit.edu	36	5	140167040	140167040	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140167040	140167040	PCDHA4	5	C	C	T	19
PCDHB10	56126	broad.mit.edu	36	5	140553983	140553983	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	140553983	140553983	PCDHB10	5	G	G	A	38
GABRG2	2566	broad.mit.edu	36	5	161508812	161508812	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	161508812	161508812	GABRG2	5	C	C	G	32
TRIM10	10107	broad.mit.edu	36	6	30236491	30236491	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30236491	30236491	TRIM10	6	G	G	A	39
FOXO3	2309	broad.mit.edu	36	6	109091890	109091890	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	109091890	109091890	FOXO3	6	G	G	T	47
BBS9	27241	broad.mit.edu	36	7	33161813	33161813	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	33161813	33161813	BBS9	7	G	G	A	33
EBF2	64641	broad.mit.edu	36	8	25774565	25774565	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	25774565	25774565	EBF2	8	G	G	A	38
ADAMTSL2	9719	broad.mit.edu	36	9	135402129	135402129	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	135402129	135402129	ADAMTSL2	9	G	G	T	42
MAGED2	10916	broad.mit.edu	36	X	54853268	54853268	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54853268	54853268	MAGED2	23	C	C	T	22
IRS4	8471	broad.mit.edu	36	X	107864039	107864039	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107864039	107864039	IRS4	23	C	C	T	27
TRIT1	54802	broad.mit.edu	36	1	40088471	40088471	+	Frame_Shift_Del	DEL	G	-	G	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	40088471	40088471	TRIT1	1	G	-	G	47
SLC30A1	7779	broad.mit.edu	36	1	209815859	209815865	+	Frame_Shift_Del	DEL	CAGATTC	-	CAGATTC	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	209815859	209815865	SLC30A1	1	CAGATTC	-	CAGATTC	25
ARHGAP36	158763	broad.mit.edu	36	X	130043567	130043570	+	Frame_Shift_Del	DEL	GACA	-	GACA	novel	Unknown	TCGA-24-2260-01	TCGA-24-2260-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	130043567	130043570	ARHGAP36	23	GACA	-	GACA	45
