Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7637118	7637118	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS2	57505	broad.mit.edu	37	6	44269927	44269927	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2328071	2328071	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66982438	66982438	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87049345	87049345	+	Missense_Mutation	SNP	C	A	A	rs8187801	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48177929	48177929	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22025692	22025692	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119020801	119020801	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG8	64241	broad.mit.edu	37	2	44102186	44102186	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116335076	116335076	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148637840	148637840	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACB	32	broad.mit.edu	37	12	109691918	109691918	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCSL	390110	broad.mit.edu	37	11	44071940	44071940	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23564591	23564591	+	5'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55058377	55058377	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT11	26027	broad.mit.edu	37	1	55081988	55081988	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP1	52	broad.mit.edu	37	2	272282	272282	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRC	93953	broad.mit.edu	37	X	70830447	70830447	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20482618	20482618	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20448754	20448754	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSS3	79611	broad.mit.edu	37	12	81568735	81568735	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTC1	70	broad.mit.edu	37	15	35084612	35084612	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN2	88	broad.mit.edu	37	1	236912739	236912739	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACVR1	90	broad.mit.edu	37	2	158627146	158627146	+	Intron	DEL	A	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39618664	39618664	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106321244	106321244	+	RNA	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106322151	106322151	+	RNA	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106631450	106631450	+	RNA	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107013490	107013490	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33661864	33661864	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28214865	28214866	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178551970	178551970	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS6	11174	broad.mit.edu	37	5	64511296	64511296	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18681848	18681848	+	Silent	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18718326	18718327	+	Intron	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAR	103	broad.mit.edu	37	1	154558793	154558793	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167815034	167815034	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45699649	45699649	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70901768	70901768	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK1	156	broad.mit.edu	37	11	67051244	67051244	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64778576	64778577	+	5'UTR	DNP	GG	AT	AT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58126629	58126629	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP5	729092	broad.mit.edu	37	10	75476853	75476853	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL1	123624	broad.mit.edu	37	15	86807844	86807844	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100316544	100316544	+	5'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100340791	100340791	+	Silent	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241813512	241813512	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159032508	159032508	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42869852	42869852	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86261450	86261450	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALAD	210	broad.mit.edu	37	9	116153921	116153921	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110951170	110951170	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALKBH3	221120	broad.mit.edu	37	11	43905665	43905665	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX12B	242	broad.mit.edu	37	17	7983194	7983194	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALX3	257	broad.mit.edu	37	1	110607491	110607491	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38574616	38574616	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108315709	108315709	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41530361	41530361	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41550651	41550651	+	Missense_Mutation	SNP	C	A	A	rs139513895		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14797484	14797484	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD20B	729171	broad.mit.edu	37	2	95513926	95513926	+	Intron	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14797600	14797600	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14822354	14822354	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99166797	99166797	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26568988	26568988	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26621311	26621311	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26646140	26646140	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO5	203859	broad.mit.edu	37	11	22296152	22296152	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90340611	90340611	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99097167	99097167	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA2	321	broad.mit.edu	37	15	29386560	29386560	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3A	200315	broad.mit.edu	37	22	39358303	39358303	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21234718	21234718	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOL3	80833	broad.mit.edu	37	22	36541707	36541707	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOO	79135	broad.mit.edu	37	X	23874610	23874610	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27327844	27327844	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP10	89872	broad.mit.edu	37	1	154293724	154293724	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP3	64411	broad.mit.edu	37	5	141059692	141059692	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP1	27236	broad.mit.edu	37	4	153803943	153803943	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFIP1	27236	broad.mit.edu	37	4	153804121	153804121	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFRP1	10139	broad.mit.edu	37	20	62337215	62337215	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57867567	57867567	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156908399	156908399	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7516153	7516153	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF18	23370	broad.mit.edu	37	19	7523279	7523279	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34623960	34623960	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58825772	58825772	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL14	80117	broad.mit.edu	37	3	160395109	160395109	+	5'UTR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL4D	379	broad.mit.edu	37	17	41477680	41477680	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSA	410	broad.mit.edu	37	22	51064137	51064137	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3022002	3022002	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123267186	123267186	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASCC3	10973	broad.mit.edu	37	6	101075586	101075586	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97498562	97498562	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62550769	62550769	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197053652	197053652	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197112929	197112929	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119903520	119903520	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976664	119976664	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3C	219293	broad.mit.edu	37	1	1387844	1387844	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF2	1386	broad.mit.edu	37	2	175939289	175939289	+	3'UTR	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATHL1	80162	broad.mit.edu	37	11	294668	294668	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2A1	487	broad.mit.edu	37	16	28912103	28912103	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77264814	77264814	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	77107846	77107846	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN7L2	127002	broad.mit.edu	37	1	110034140	110034140	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AURKC	6795	broad.mit.edu	37	19	57743867	57743867	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AXL	558	broad.mit.edu	37	19	41745580	41745580	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11039159	11039159	+	3'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69646450	69646450	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BARD1	580	broad.mit.edu	37	2	215610601	215610601	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134319603	134319603	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134360104	134360104	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33217115	33217115	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS9	27241	broad.mit.edu	37	7	33423310	33423310	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60679831	60679831	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9L	283149	broad.mit.edu	37	11	118769541	118769541	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCO2	83875	broad.mit.edu	37	11	112065407	112065407	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDKRB2	624	broad.mit.edu	37	14	96703586	96703586	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDP1	55814	broad.mit.edu	37	5	70800487	70800487	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND2	139105	broad.mit.edu	37	X	18234842	18234842	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHLHE22	27319	broad.mit.edu	37	8	65494499	65494499	+	3'UTR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60273120	60273120	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32626377	32626377	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC7	79444	broad.mit.edu	37	20	61869230	61869230	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLK	640	broad.mit.edu	37	8	11412873	11412873	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP1	649	broad.mit.edu	37	8	22051705	22051705	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP7	655	broad.mit.edu	37	20	55748170	55748170	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC2	54796	broad.mit.edu	37	9	16775671	16775671	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOLA2	552900	broad.mit.edu	37	16	30104165	30104165	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPI	671	broad.mit.edu	37	20	36953270	36953270	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140487388	140487388	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA1	672	broad.mit.edu	37	17	41201263	41201263	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRWD3	254065	broad.mit.edu	37	X	79948345	79948345	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A1	11120	broad.mit.edu	37	6	26465746	26465746	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf11	83938	broad.mit.edu	37	10	78316967	78316967	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf129	142827	broad.mit.edu	37	10	96972521	96972521	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103783277	103783277	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103783347	103783347	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103783390	103783390	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf90	118611	broad.mit.edu	37	10	128202476	128202476	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf40	143501	broad.mit.edu	37	11	4592738	4592738	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf82	220042	broad.mit.edu	37	11	82643734	82643734	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97093849	97093849	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46952048	46952048	+	5'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24921181	24921181	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf59	388135	broad.mit.edu	37	15	74032524	74032524	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244756638	244756638	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210016686	210016686	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179478583	179478583	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20071686	20071686	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf72	92667	broad.mit.edu	37	20	17951076	17951076	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45947090	45947090	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf45	54069	broad.mit.edu	37	21	33642125	33642125	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf34	79823	broad.mit.edu	37	2	44931341	44931341	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf49	79074	broad.mit.edu	37	2	105959692	105959692	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf51	200523	broad.mit.edu	37	2	88828700	88828700	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf76	130355	broad.mit.edu	37	2	120069237	120069237	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74041303	74041303	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf26	84319	broad.mit.edu	37	3	99891040	99891040	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf52	79669	broad.mit.edu	37	3	111849175	111849175	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf28	64417	broad.mit.edu	37	5	43446488	43446488	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf34	375444	broad.mit.edu	37	5	43490699	43490699	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41160554	41160554	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf221	154288	broad.mit.edu	37	6	74073171	74073171	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf222	389384	broad.mit.edu	37	6	36294173	36294173	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf57	135154	broad.mit.edu	37	6	71298475	71298475	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf58	352999	broad.mit.edu	37	6	127902228	127902228	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf22	492307	broad.mit.edu	37	8	49987876	49987876	+	3'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69445253	69445253	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf80	389643	broad.mit.edu	37	8	27884611	27884611	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf123	90871	broad.mit.edu	37	9	7799433	7799433	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf3	84909	broad.mit.edu	37	9	97718385	97718385	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf43	257169	broad.mit.edu	37	9	116190611	116190611	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf72	203228	broad.mit.edu	37	9	27561471	27561471	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA9	768	broad.mit.edu	37	9	35676228	35676228	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACHD1	57685	broad.mit.edu	37	1	65130150	65130150	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13418718	13418718	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2760919	2760919	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18439999	18439999	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18440046	18440046	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18795554	18795554	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNG6	59285	broad.mit.edu	37	19	54515405	54515405	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86028484	86028484	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62636555	62636555	+	Silent	SNP	G	T	T	rs139597981		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14990164	14990164	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71275273	71275273	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKV	79012	broad.mit.edu	37	3	49899952	49899952	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7811344	7811344	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN1	823	broad.mit.edu	37	11	64950570	64950570	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75741388	75741388	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD8	22900	broad.mit.edu	37	19	48733782	48733783	+	Frame_Shift_Ins	INS	-	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARS2	79587	broad.mit.edu	37	13	111303475	111303475	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC1	55259	broad.mit.edu	37	12	25302541	25302541	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP10	843	broad.mit.edu	37	2	202074065	202074065	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104904888	104904888	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN2	147381	broad.mit.edu	37	18	70205763	70205763	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBS	875	broad.mit.edu	37	21	44478211	44478212	+	Intron	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC102B	79839	broad.mit.edu	37	18	66541772	66541772	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC132	55610	broad.mit.edu	37	7	92926565	92926565	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179742556	179742556	+	Intron	SNP	C	A	A	rs13422491	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC148	130940	broad.mit.edu	37	2	159196804	159196804	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC158	339965	broad.mit.edu	37	4	77265625	77265625	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC30	728621	broad.mit.edu	37	1	43002200	43002201	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180377196	180377196	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC50	152137	broad.mit.edu	37	3	191078966	191078966	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC55	84081	broad.mit.edu	37	17	28506276	28506276	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC73	493860	broad.mit.edu	37	11	32634980	32634980	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC80	151887	broad.mit.edu	37	3	112326064	112326064	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50052963	50052963	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8	10694	broad.mit.edu	37	21	30446051	30446051	+	5'Flank	SNP	C	A	A	rs142408912	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7585988	7585988	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160810929	160810929	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300C	10871	broad.mit.edu	37	17	72538993	72538993	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD84	8832	broad.mit.edu	37	1	160518221	160518221	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDADC1	81602	broad.mit.edu	37	13	49852428	49852428	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42EP4	23580	broad.mit.edu	37	17	71282454	71282454	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC73	79577	broad.mit.edu	37	1	193219878	193219878	+	3'UTR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA2	157313	broad.mit.edu	37	8	25327394	25327395	+	Intron	DEL	TT	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174231809	174231809	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21842476	21842476	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19473730	19473730	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63489400	63489400	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26902527	26902527	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR2	54825	broad.mit.edu	37	5	176002979	176002979	+	Nonsense_Mutation	SNP	C	A	A	rs142354187	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37686773	37686773	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK13	8621	broad.mit.edu	37	7	40041402	40041402	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK8	1024	broad.mit.edu	37	13	26927935	26927935	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN2A	1029	broad.mit.edu	37	9	21971107	21971107	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDNF	441549	broad.mit.edu	37	10	14869930	14869930	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125891246	125891246	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELA2B	51032	broad.mit.edu	37	1	15809916	15809916	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214791841	214791841	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214830198	214830198	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPO	79172	broad.mit.edu	37	2	25038675	25038676	+	Intron	INS	-	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPQ	55166	broad.mit.edu	37	6	49448834	49448834	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP290	80184	broad.mit.edu	37	12	88454728	88454728	+	Missense_Mutation	SNP	A	G	G	rs117852025	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1B	8208	broad.mit.edu	37	21	37775118	37775118	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50827905	50827906	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6707148	6707148	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6206463	6206463	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40116533	40116533	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53319682	53319682	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHGB	1114	broad.mit.edu	37	20	5903918	5903918	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHP2	63928	broad.mit.edu	37	16	23768979	23768979	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST8	64377	broad.mit.edu	37	19	34180420	34180420	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP2L	150468	broad.mit.edu	37	2	113513459	113513459	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKB	1152	broad.mit.edu	37	14	103986586	103986586	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCA1	1179	broad.mit.edu	37	1	86934763	86934763	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN3	1182	broad.mit.edu	37	4	170634343	170634343	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC18C	283971	broad.mit.edu	37	16	70070441	70070442	+	Intron	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4F	165530	broad.mit.edu	37	2	71043138	71043138	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLLU1OS	574016	broad.mit.edu	37	12	92814926	92814926	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95670781	95670781	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1	1209	broad.mit.edu	37	19	45491440	45491440	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN1	22883	broad.mit.edu	37	1	9791175	9791175	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140282979	140282979	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140285095	140285095	+	Nonstop_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLVS2	134829	broad.mit.edu	37	6	123376978	123376978	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87660175	87660175	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTLN	54875	broad.mit.edu	37	9	17135167	17135167	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74535812	74535812	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2787144	2787144	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	2967299	2967299	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125521465	125521465	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103388868	103388868	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103400539	103400539	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33144976	33144976	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75811566	75811566	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75875472	75875472	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121210169	121210169	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101817685	101817685	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70647993	70647993	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55988989	55988989	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL23A1	91522	broad.mit.edu	37	5	177666129	177666129	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86430757	86430757	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	116968563	116968563	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117020842	117020842	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7412815	7412815	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7420254	7420254	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7571510	7571510	+	Silent	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111119407	111119407	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111134847	111134847	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107802372	107802372	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107826236	107826236	+	Intron	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107412957	107412957	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107437626	107437626	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189927869	189927869	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48630049	48630049	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3665248	3665248	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD7	149951	broad.mit.edu	37	20	31294240	31294240	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD8	54951	broad.mit.edu	37	4	47462120	47462120	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG	22820	broad.mit.edu	37	3	128984617	128984617	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129908681	129908681	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE5	57699	broad.mit.edu	37	6	36710313	36710313	+	Intron	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148905796	148905796	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207760745	207760746	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197192287	197192287	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197398542	197398543	+	Intron	DNP	CA	AG	AG			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREB5	9586	broad.mit.edu	37	7	28609916	28609916	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17292345	17292345	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRP	1401	broad.mit.edu	37	1	159684363	159684363	+	5'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAM	56253	broad.mit.edu	37	11	122724859	122724859	+	Intron	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3038656	3038656	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3216805	3216805	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34035054	34035054	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113267697	113267697	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113349007	113349007	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113563126	113563126	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113871477	113871477	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSN3	1448	broad.mit.edu	37	4	71110523	71110523	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G3	1456	broad.mit.edu	37	5	122950203	122950203	+	3'UTR	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST4	1472	broad.mit.edu	37	20	23669590	23669590	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56099141	56099141	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTHRC1	115908	broad.mit.edu	37	8	104388028	104388028	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80085026	80085026	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80816440	80816440	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSC	1075	broad.mit.edu	37	11	88029178	88029178	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSF	8722	broad.mit.edu	37	11	66333189	66333189	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUEDC1	404093	broad.mit.edu	37	17	55948816	55948816	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101871019	101871019	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCR1	3577	broad.mit.edu	37	2	219029412	219029412	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf1	9142	broad.mit.edu	37	X	144909503	144909503	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf36	79742	broad.mit.edu	37	X	45013320	45013320	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22960689	22960689	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143960508	143960508	+	Missense_Mutation	SNP	C	A	A	rs61751139		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B1	1584	broad.mit.edu	37	8	143960555	143960555	+	Silent	SNP	G	A	A	rs5284		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP24A1	1591	broad.mit.edu	37	20	52779269	52779269	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41415986	41415987	+	Intron	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135352538	135352538	+	3'UTR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15796003	15796003	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F12	66002	broad.mit.edu	37	19	15806584	15806584	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F22	126410	broad.mit.edu	37	19	15659139	15659139	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57480786	57480786	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85950086	85950086	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	86068172	86068172	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121929324	121929324	+	3'UTR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121929679	121929679	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBH	1621	broad.mit.edu	37	9	136517329	136517329	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBX1	120237	broad.mit.edu	37	11	20178654	20178655	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF17	80067	broad.mit.edu	37	2	172314297	172314297	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF6	55827	broad.mit.edu	37	1	167944259	167944259	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8	50717	broad.mit.edu	37	1	160192443	160192443	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF8	50717	broad.mit.edu	37	1	160195230	160195230	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6651357	6651357	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6662213	6662213	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779850	36779850	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDA1	79016	broad.mit.edu	37	19	17426838	17426838	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110714689	110714689	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDO	8528	broad.mit.edu	37	6	110714692	110714692	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108709290	108709290	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108811239	108811239	+	3'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX27	55661	broad.mit.edu	37	20	47859008	47859008	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX54	79039	broad.mit.edu	37	12	113607474	113607474	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DERA	51071	broad.mit.edu	37	12	16135460	16135460	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DES	1674	broad.mit.edu	37	2	220288598	220288598	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB31	25861	broad.mit.edu	37	9	117185751	117185751	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGAT2L6	347516	broad.mit.edu	37	X	69397579	69397579	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKG	1608	broad.mit.edu	37	3	185882895	185882895	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50134575	50134575	+	Splice_Site	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125451531	125451531	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX37	57647	broad.mit.edu	37	12	125452996	125452996	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH1	1729	broad.mit.edu	37	5	140951407	140951409	+	Intron	TNP	CAG	ATT	ATT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51034617	51034617	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83243648	83243648	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX5	1749	broad.mit.edu	37	7	96651649	96651650	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78351539	78351539	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124293409	124293409	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124311115	124311115	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21603895	21603895	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76433798	76433798	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7667583	7667583	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB2	3300	broad.mit.edu	37	2	220147942	220147942	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6587784	6587784	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	130985090	130985090	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31389052	31389052	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225695309	225695309	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169188646	169188646	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169494414	169494414	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169507096	169507096	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111398842	111398842	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	286497	286497	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	340166	340166	+	Silent	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99452598	99452598	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99461650	99461650	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83845498	83845498	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPH5	51611	broad.mit.edu	37	1	101487374	101487375	+	Intron	DEL	AC	-	-	rs71795555		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116447469	116447469	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154598762	154598762	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109023311	109023311	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DQX1	165545	broad.mit.edu	37	2	74747182	74747183	+	Intron	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41667981	41667981	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42064701	42064701	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSE	29940	broad.mit.edu	37	6	116757588	116757588	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28935179	28935179	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7585772	7585772	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56346986	56346987	+	Intron	DEL	CA	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32418944	32418944	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32431873	32431873	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS3L	56931	broad.mit.edu	37	19	5790421	5790421	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30452730	30452730	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102486120	102486120	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1I2	1781	broad.mit.edu	37	2	172586209	172586209	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2LI1	51626	broad.mit.edu	37	2	44001325	44001325	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71762366	71762366	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71801371	71801371	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108407548	108407548	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E4F1	1877	broad.mit.edu	37	16	2285496	2285496	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECM2	1842	broad.mit.edu	37	9	95285068	95285068	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECT2L	345930	broad.mit.edu	37	6	139134500	139134500	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDARADD	128178	broad.mit.edu	37	1	236645629	236645629	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEA1	8411	broad.mit.edu	37	12	93213135	93213135	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF2	1938	broad.mit.edu	37	19	3979399	3979399	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB1	79645	broad.mit.edu	37	8	49641660	49641660	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42959153	42959153	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38463130	38463130	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37367025	37367025	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23692846	23692846	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23764886	23764886	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL4	1996	broad.mit.edu	37	1	50663023	50663023	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37284091	37284091	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP4	26610	broad.mit.edu	37	11	31531344	31531344	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR4P	326342	broad.mit.edu	37	19	6988864	6988864	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111441533	111441533	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120608213	120608213	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120638941	120638941	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132498024	132498024	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L1	2036	broad.mit.edu	37	20	34776397	34776397	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111598060	111598060	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111956428	111956428	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC2	26122	broad.mit.edu	37	2	149542268	149542268	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA2	1969	broad.mit.edu	37	1	16451705	16451705	+	3'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89457408	89457408	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66230705	66230705	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	97329757	97329757	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920428	134920428	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB3	2049	broad.mit.edu	37	3	184298540	184298540	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142566519	142566519	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220170738	220170738	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERAP2	64167	broad.mit.edu	37	5	96215552	96215553	+	Frame_Shift_Ins	INS	-	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB2	2064	broad.mit.edu	37	17	37866523	37866523	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212568781	212568781	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC2	26059	broad.mit.edu	37	3	56207605	56207605	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESM1	11082	broad.mit.edu	37	5	54277784	54277784	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158591576	158591576	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETNK1	55500	broad.mit.edu	37	12	22837360	22837360	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133767755	133767755	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133833682	133833682	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6305703	6305703	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP1	2168	broad.mit.edu	37	2	88422681	88422681	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADD	8772	broad.mit.edu	37	11	70052581	70052581	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAF2	23197	broad.mit.edu	37	5	175906005	175906005	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14765734	14765734	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM107B	83641	broad.mit.edu	37	10	14816766	14816766	+	5'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A1	92689	broad.mit.edu	37	4	38893431	38893431	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139160791	139160791	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM168B	130074	broad.mit.edu	37	2	131840263	131840263	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15262764	15262764	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188A	80013	broad.mit.edu	37	10	15838253	15838253	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM18B2	201158	broad.mit.edu	37	17	15410343	15410343	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM35A	54537	broad.mit.edu	37	10	88911171	88911171	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10672837	10672837	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10696195	10696195	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34149849	34149849	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24329278	24329278	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55B	120406	broad.mit.edu	37	11	114569276	114569276	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55C	91775	broad.mit.edu	37	3	101520220	101520220	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24977273	24977273	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49203990	49203990	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM66D	100132923	broad.mit.edu	37	8	12237751	12237751	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71B	153745	broad.mit.edu	37	5	156589540	156589540	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71C	196472	broad.mit.edu	37	12	100042354	100042354	+	Frame_Shift_Del	DEL	A	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43627280	43627280	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A6	389730	broad.mit.edu	37	9	43627756	43627756	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCA	2175	broad.mit.edu	37	16	89882414	89882414	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10067893	10067893	+	5'Flank	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP1	10160	broad.mit.edu	37	13	99042122	99042122	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92620196	92620196	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126401102	126401102	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13679441	13679441	+	3'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL19	54620	broad.mit.edu	37	16	30937210	30937210	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5956140	5956140	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO31	79791	broad.mit.edu	37	16	87367539	87367539	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCN2	2220	broad.mit.edu	37	9	137778215	137778215	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157659957	157659957	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FERMT2	10979	broad.mit.edu	37	14	53385810	53385810	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFR1	2260	broad.mit.edu	37	8	38275300	38275300	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL5	9457	broad.mit.edu	37	6	97054037	97054037	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67270784	67270784	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FH	2271	broad.mit.edu	37	1	241669315	241669315	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIBCD1	84929	broad.mit.edu	37	9	133780732	133780732	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72441308	72441308	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP9	11328	broad.mit.edu	37	7	33014683	33014683	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152324370	152324370	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153590122	153590122	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNA	2316	broad.mit.edu	37	X	153592549	153592549	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNB	2317	broad.mit.edu	37	3	58154384	58154384	+	Silent	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	29008254	29008254	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371460	240371460	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO3	2328	broad.mit.edu	37	1	171061893	171061893	+	Missense_Mutation	SNP	G	A	A	rs72549320		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNTB	2342	broad.mit.edu	37	14	65415485	65415485	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114268856	114268856	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP4	116113	broad.mit.edu	37	6	41556419	41556419	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPR2	2358	broad.mit.edu	37	19	52271879	52271879	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39431937	39431937	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29626093	29626093	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13838385	13838385	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD7	90167	broad.mit.edu	37	X	131261870	131261870	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRYL	285527	broad.mit.edu	37	4	48603934	48603934	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32783856	32783856	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRY	10129	broad.mit.edu	37	13	32808579	32808579	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJD1	55783	broad.mit.edu	37	16	71318668	71318668	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB4	128954	broad.mit.edu	37	22	17489065	17489065	+	5'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPB2	126626	broad.mit.edu	37	1	151060786	151060786	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA6	2559	broad.mit.edu	37	5	161118889	161118889	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161576338	161576338	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD1	2571	broad.mit.edu	37	2	171700608	171700608	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26534748	26534748	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GADL1	339896	broad.mit.edu	37	3	30875486	30875486	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALC	2581	broad.mit.edu	37	14	88419944	88419944	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALE	2582	broad.mit.edu	37	1	24123493	24123493	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD1	57798	broad.mit.edu	37	7	92078044	92078044	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153785637	153785637	+	Intron	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP7	388646	broad.mit.edu	37	1	89599178	89599178	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCAT	23464	broad.mit.edu	37	22	38211173	38211173	+	Missense_Mutation	SNP	C	T	T	rs142152598		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109086647	109086647	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCG	2641	broad.mit.edu	37	2	163005716	163005716	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120576409	120576409	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74863115	74863115	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF9	2661	broad.mit.edu	37	5	132199862	132199862	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158372287	158372287	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	118028883	118028883	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55223966	55223966	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRAL	389400	broad.mit.edu	37	6	55266491	55266492	+	Intron	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGN	199720	broad.mit.edu	37	19	38880863	38880863	+	5'Flank	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GINS1	9837	broad.mit.edu	37	20	25397890	25397890	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA9	81025	broad.mit.edu	37	1	39341359	39341359	+	Nonsense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB5	2709	broad.mit.edu	37	1	35223275	35223275	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB6	10804	broad.mit.edu	37	13	20797639	20797639	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L3	112937	broad.mit.edu	37	11	134147210	134147210	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6554779	6554779	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI2	2736	broad.mit.edu	37	2	121736178	121736178	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175564774	175564774	+	3'UTR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX3	10539	broad.mit.edu	37	10	131958441	131958441	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT8D1	55830	broad.mit.edu	37	3	52731871	52731873	+	In_Frame_Del	DEL	CTC	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPS	8833	broad.mit.edu	37	3	155655474	155655474	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAT3	346562	broad.mit.edu	37	7	80108232	80108232	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA3	2802	broad.mit.edu	37	12	133357453	133357453	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167745577	167745577	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLIM4	27333	broad.mit.edu	37	3	167745622	167745622	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPNMB	10457	broad.mit.edu	37	7	23313759	23313759	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR149	344758	broad.mit.edu	37	3	154146868	154146868	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR155	151556	broad.mit.edu	37	2	175324842	175324842	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887278	25887278	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25887972	25887972	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR39	2863	broad.mit.edu	37	2	133174633	133174633	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90159564	90159564	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPT2	84706	broad.mit.edu	37	16	46940822	46940822	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIP1	23426	broad.mit.edu	37	12	66856730	66856730	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK7	131890	broad.mit.edu	37	3	141497180	141497180	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRK7	131890	broad.mit.edu	37	3	141535483	141535483	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146669706	146669706	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM4	2914	broad.mit.edu	37	6	34003554	34003554	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM7	2917	broad.mit.edu	37	3	7456889	7456889	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52701245	52701245	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144714835	144714835	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUK1	2987	broad.mit.edu	37	1	228333808	228333808	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26502035	26502035	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122641153	122641153	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAX1	10456	broad.mit.edu	37	1	154245987	154245987	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBG2	3048	broad.mit.edu	37	11	5274632	5274633	+	Intron	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HBS1L	10767	broad.mit.edu	37	6	135299732	135299732	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30662551	30662551	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN3	57657	broad.mit.edu	37	1	155254545	155254545	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN3	57657	broad.mit.edu	37	1	155255850	155255850	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDGFRP3	50810	broad.mit.edu	37	15	83820030	83820030	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR5B	54497	broad.mit.edu	37	2	37306243	37306243	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43503439	43503439	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66712591	66712591	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM	220296	broad.mit.edu	37	11	124792769	124792769	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28451171	28451171	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRIP3	8479	broad.mit.edu	37	16	30006374	30006374	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H1B	3009	broad.mit.edu	37	6	27835210	27835210	+	Missense_Mutation	SNP	G	T	T	rs141517982		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST3H2BB	128312	broad.mit.edu	37	1	228646048	228646048	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST4H4	121504	broad.mit.edu	37	12	14924071	14924071	+	5'Flank	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP1	3096	broad.mit.edu	37	6	12136197	12136197	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIVEP2	3097	broad.mit.edu	37	6	143074281	143074281	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DRB5	3127	broad.mit.edu	37	6	32546912	32546913	+	Intron	INS	-	G	G	rs34252386		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29974692	29974692	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLX	3142	broad.mit.edu	37	1	221057757	221057757	+	Missense_Mutation	SNP	G	T	T	rs77213368	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185986059	185986059	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162900351	162900351	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43058123	43058123	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPA1	3178	broad.mit.edu	37	12	54675051	54675051	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPU	3192	broad.mit.edu	37	1	245020932	245020932	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER1	9456	broad.mit.edu	37	5	78697767	78697767	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD2	150280	broad.mit.edu	37	22	30500295	30500295	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27181683	27181683	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA5	3202	broad.mit.edu	37	7	27183101	27183102	+	Nonsense_Mutation	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB1	3211	broad.mit.edu	37	17	46608020	46608020	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST1	9957	broad.mit.edu	37	4	11400898	11400898	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST2	9956	broad.mit.edu	37	16	22926287	22926287	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST3A1	9955	broad.mit.edu	37	17	13399534	13399534	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118824886	118824886	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B7P2	158160	broad.mit.edu	37	10	38651335	38651335	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD3B2	3284	broad.mit.edu	37	1	119988063	119988063	+	3'UTR	SNP	G	T	T	rs144135660	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148843383	148843383	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSP90B1	7184	broad.mit.edu	37	12	104324296	104324296	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22161447	22161447	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87680719	87680719	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88041057	88041057	+	3'UTR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS2	55699	broad.mit.edu	37	1	220284293	220284293	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDS	3423	broad.mit.edu	37	X	148582474	148582474	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IER2	9592	broad.mit.edu	37	19	13264219	13264219	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA14	3448	broad.mit.edu	37	9	21209227	21209227	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA21	3452	broad.mit.edu	37	9	21166379	21166379	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNAR2	3455	broad.mit.edu	37	21	34635794	34635796	+	In_Frame_Del	DEL	ATA	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47119023	47119023	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP1	10642	broad.mit.edu	37	17	47123622	47123622	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160431833	160431833	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160062751	160062751	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111656056	111656056	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67787288	67787288	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17A	3605	broad.mit.edu	37	6	52054023	52054023	+	Missense_Mutation	SNP	G	T	T	rs147810050	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52103574	52103575	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F10	84639	broad.mit.edu	37	2	113832767	113832767	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAP	3556	broad.mit.edu	37	3	190363739	190363739	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL32	9235	broad.mit.edu	37	16	3117726	3117726	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27375238	27375238	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15257144	15257144	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSL5	10022	broad.mit.edu	37	1	67263727	67263727	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156813925	156813925	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7172531	7172531	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7267399	7267399	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP2	10788	broad.mit.edu	37	5	75871615	75871615	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC1	9922	broad.mit.edu	37	3	12949849	12949849	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQSEC2	23096	broad.mit.edu	37	X	53280025	53280025	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123142545	123142545	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRAK4	51135	broad.mit.edu	37	12	44171364	44171364	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS2	8660	broad.mit.edu	37	13	110434665	110434665	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITFG1	81533	broad.mit.edu	37	16	47252779	47252779	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68643859	68643859	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15646309	15646309	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31332582	31332582	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187506203	187506203	+	Silent	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAV	3685	broad.mit.edu	37	2	187532439	187532439	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB4	3691	broad.mit.edu	37	17	73736056	73736056	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26806743	26806743	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26839527	26839527	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAK1	3716	broad.mit.edu	37	1	65332725	65332725	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39927835	39927835	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123813744	123813744	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123987731	123987731	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124048912	124048912	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119915472	119915472	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211192527	211192527	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH5	27133	broad.mit.edu	37	14	63246455	63246455	+	Silent	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88792823	88792823	+	5'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK13	56659	broad.mit.edu	37	14	90650778	90650778	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ1	3784	broad.mit.edu	37	11	2798316	2798316	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138647049	138647049	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT1	57582	broad.mit.edu	37	9	138648681	138648681	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD20	222658	broad.mit.edu	37	6	36455032	36455032	+	3'UTR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR1	10945	broad.mit.edu	37	19	48887437	48887437	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0319L	79932	broad.mit.edu	37	1	35907738	35907738	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0528	9847	broad.mit.edu	37	12	22602917	22602917	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27640206	27640206	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0649	9858	broad.mit.edu	37	9	138376528	138376528	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123167293	123167309	+	Splice_Site	DEL	TACGATCTTTTTAGTTA	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1191	57179	broad.mit.edu	37	5	175777570	175777570	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1267	284058	broad.mit.edu	37	17	44248468	44248468	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1377	57562	broad.mit.edu	37	11	101786111	101786111	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43497741	43497741	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20944668	20944668	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16362299	16362299	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16488514	16488514	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900310	51900310	+	5'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51901221	51901221	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3A	11127	broad.mit.edu	37	5	132051343	132051343	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF7	374654	broad.mit.edu	37	15	90177050	90177050	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170001194	170001194	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36350474	36350474	+	Missense_Mutation	SNP	G	T	T	rs34494265	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL22	84861	broad.mit.edu	37	22	20805123	20805123	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL32	114792	broad.mit.edu	37	6	97424052	97424052	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51517963	51517963	+	3'UTR	SNP	C	A	A	rs144886029	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK14	43847	broad.mit.edu	37	19	51581198	51581198	+	3'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK7	5650	broad.mit.edu	37	19	51483660	51483660	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK8	11202	broad.mit.edu	37	19	51501051	51501051	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNDC1	85442	broad.mit.edu	37	10	135012104	135012104	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38926035	38926035	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT37	8688	broad.mit.edu	37	17	39580153	39580154	+	Intron	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT38	8687	broad.mit.edu	37	17	39594727	39594727	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6A	3853	broad.mit.edu	37	12	52886347	52886347	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT73	319101	broad.mit.edu	37	12	53009975	53009975	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-8	728299	broad.mit.edu	37	21	32410539	32410539	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP21-1	337977	broad.mit.edu	37	21	32127565	32127565	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25909923	25909923	+	Missense_Mutation	SNP	G	A	A	rs145050697	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153135154	153135154	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L2HGDH	79944	broad.mit.edu	37	14	50713738	50713738	+	3'UTR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LACTB2	51110	broad.mit.edu	37	8	71553380	71553380	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6985219	6985219	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7007241	7007241	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129712466	129712466	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA3	3909	broad.mit.edu	37	18	21343292	21343292	+	Intron	SNP	A	G	G	rs144223636	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112493878	112493878	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60889864	60889865	+	Frame_Shift_Ins	INS	-	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107569637	107569637	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMP2	3920	broad.mit.edu	37	X	119562498	119562498	+	3'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LANCL2	55915	broad.mit.edu	37	7	55468765	55468768	+	Intron	DEL	CTCT	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1D	353134	broad.mit.edu	37	1	152770267	152770267	+	5'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53307452	53307452	+	Nonsense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53313872	53313872	+	5'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPREL1	55214	broad.mit.edu	37	3	189688705	189688705	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR5	8549	broad.mit.edu	37	12	71953251	71953251	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104309481	104309481	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL5	222662	broad.mit.edu	37	6	35773736	35773737	+	Missense_Mutation	DNP	GC	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA4	23547	broad.mit.edu	37	19	54848104	54848104	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176397	55176397	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55176411	55176411	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMD1	8994	broad.mit.edu	37	3	45715942	45715942	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO1	84894	broad.mit.edu	37	15	77907657	77907657	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMF2	91289	broad.mit.edu	37	22	50943086	50943086	+	Missense_Mutation	SNP	C	A	A	rs148002247	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC389458	389458	broad.mit.edu	37	7	5071478	5071478	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9450430	9450430	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15326010	15326010	+	5'Flank	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC653113	653113	broad.mit.edu	37	12	8388426	8388426	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC90586	90586	broad.mit.edu	37	17	41019706	41019706	+	Silent	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22724453	22724453	+	RNA	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23265035	23265035	+	RNA	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOR	4014	broad.mit.edu	37	1	153233489	153233489	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAR4	2846	broad.mit.edu	37	X	78010479	78010479	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	160968679	160968679	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62679441	62679441	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRAT	9227	broad.mit.edu	37	4	155665772	155665772	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH1	23143	broad.mit.edu	37	13	47260213	47260213	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42360763	42360763	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42368193	42368193	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRGUK	136332	broad.mit.edu	37	7	133932305	133932305	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG2	9860	broad.mit.edu	37	1	113616016	113616016	+	5'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141092221	141092221	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141201815	141201815	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141597485	141597485	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141665495	141665495	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141708032	141708032	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53715182	53715182	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76376990	76376990	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37B	114659	broad.mit.edu	37	17	30362756	30362756	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC40	55631	broad.mit.edu	37	1	70650452	70650452	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4B	94030	broad.mit.edu	37	19	51051826	51051826	+	Nonsense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133650261	133650261	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70225969	70225969	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRFIP2	9209	broad.mit.edu	37	3	37107382	37107382	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101564892	101564892	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33335854	33335854	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33500061	33500061	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY86	9450	broad.mit.edu	37	6	6626771	6626771	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYNX1	66004	broad.mit.edu	37	8	143856771	143856771	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD1	116372	broad.mit.edu	37	2	133427484	133427484	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235993715	235993715	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	1997256	1997256	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEA	10296	broad.mit.edu	37	4	1305878	1305879	+	Frame_Shift_Ins	INS	-	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB3	4114	broad.mit.edu	37	X	30254106	30254106	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23890035	23890035	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	77885848	77885848	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1B1	11253	broad.mit.edu	37	9	140001223	140001223	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1A	4130	broad.mit.edu	37	15	43820739	43820739	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71490888	71490888	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1S	55201	broad.mit.edu	37	19	17838467	17838467	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K1	5604	broad.mit.edu	37	15	66727454	66727454	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K4	6416	broad.mit.edu	37	17	12043409	12043409	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K7	5609	broad.mit.edu	37	19	7975484	7975484	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K7	5609	broad.mit.edu	37	19	7976183	7976183	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210558138	210558138	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136913701	136913701	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K6	9064	broad.mit.edu	37	1	27686699	27686699	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK15	225689	broad.mit.edu	37	8	144803920	144803920	+	Splice_Site	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK3	5595	broad.mit.edu	37	16	30129407	30129407	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPT	4137	broad.mit.edu	37	17	44049287	44049287	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164534479	164534479	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110855	165110855	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186980259	186980259	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASTL	84930	broad.mit.edu	37	10	27456180	27456180	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70895630	70895630	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM6	4175	broad.mit.edu	37	2	136633878	136633878	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM9	254394	broad.mit.edu	37	6	119252870	119252870	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCRS1	10445	broad.mit.edu	37	12	49952452	49952452	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCRS1	10445	broad.mit.edu	37	12	49959614	49959614	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCRS1	10445	broad.mit.edu	37	12	49959936	49959936	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90424501	90424501	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150840700	150840700	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED20	9477	broad.mit.edu	37	6	41888678	41888678	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEF2C	4208	broad.mit.edu	37	5	88100465	88100465	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEPE	56955	broad.mit.edu	37	4	88767740	88767740	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL6	131965	broad.mit.edu	37	3	15468019	15468019	+	5'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141760103	141760103	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5	4249	broad.mit.edu	37	2	135076304	135076304	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL2	9645	broad.mit.edu	37	11	12230986	12230986	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID2	11043	broad.mit.edu	37	X	107084577	107084577	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIOX	55586	broad.mit.edu	37	22	50926013	50926013	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516B1	574490	broad.mit.edu	37	19	54240145	54240145	+	RNA	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR523	574471	broad.mit.edu	37	19	54200947	54200947	+	5'Flank	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKL2	57496	broad.mit.edu	37	16	14345626	14345626	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKNK2	2872	broad.mit.edu	37	19	2043490	2043490	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH3	27030	broad.mit.edu	37	14	75515236	75515236	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL2	8085	broad.mit.edu	37	12	49446330	49446330	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151902166	151902166	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT11	10962	broad.mit.edu	37	1	151039792	151039792	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118376994	118376994	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLPH	79083	broad.mit.edu	37	2	238443347	238443347	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154859665	154859665	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP12	4321	broad.mit.edu	37	11	102742386	102742386	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP13	4322	broad.mit.edu	37	11	102824818	102824818	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89209476	89209476	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102662335	102662335	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158812246	158812246	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158814025	158814025	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108780803	108780804	+	Intron	INS	-	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4L1	10933	broad.mit.edu	37	15	79177441	79177441	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH10	10199	broad.mit.edu	37	2	71376433	71376433	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP2	4355	broad.mit.edu	37	17	41958785	41958785	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP6	51678	broad.mit.edu	37	7	24726949	24726949	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPPED2	744	broad.mit.edu	37	11	30439175	30439175	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MR1	3140	broad.mit.edu	37	1	181019024	181019024	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC1	4360	broad.mit.edu	37	10	17905786	17905786	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRC2	9902	broad.mit.edu	37	17	60744814	60744814	+	Nonsense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRD	116512	broad.mit.edu	37	11	68747704	68747704	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX4	117196	broad.mit.edu	37	11	18194960	18194960	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS17	51373	broad.mit.edu	37	7	56020790	56020790	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS35	60488	broad.mit.edu	37	12	27869349	27869349	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRS2	57380	broad.mit.edu	37	6	24403396	24403396	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A10	341116	broad.mit.edu	37	11	60563025	60563025	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSGN1	343930	broad.mit.edu	37	2	17998016	17998016	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47656863	47656863	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31713049	31713049	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH5	4439	broad.mit.edu	37	6	31713140	31713140	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLN	10232	broad.mit.edu	37	16	816888	816888	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR11	10903	broad.mit.edu	37	1	149907874	149907874	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9002340	9002340	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9011578	9011578	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9020885	9020885	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9033633	9033633	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9046284	9046284	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9077693	9077693	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9078005	9078005	+	Intron	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9086151	9086151	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100696350	100696350	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1262982	1262982	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1272848	1272848	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1279598	1279598	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1026437	1026437	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MVP	9961	broad.mit.edu	37	16	29857194	29857194	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3240858	3240858	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42343678	42343678	+	Intron	SNP	G	T	T	rs149981712	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48444134	48444134	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10408448	10408448	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10545707	10545707	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10366581	10366581	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23884924	23884924	+	Missense_Mutation	SNP	C	A	A	rs45464193		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH9	4627	broad.mit.edu	37	22	36696853	36696853	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL3	4634	broad.mit.edu	37	3	46904801	46904801	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123444857	123444857	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO19	80179	broad.mit.edu	37	17	34883764	34883764	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109845821	109845821	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52664516	52664516	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76870504	76870504	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666814	12666814	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2057022	2057022	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYRIP	25924	broad.mit.edu	37	3	40192632	40192632	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA15	80155	broad.mit.edu	37	4	140264216	140264216	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71208569	71208569	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPEPLD	222236	broad.mit.edu	37	7	102760290	102760290	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NASP	4678	broad.mit.edu	37	1	46083385	46083385	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT8B	51471	broad.mit.edu	37	2	73928090	73928090	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	19905954	19905954	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV2	89797	broad.mit.edu	37	11	20112467	20112467	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78593380	78593380	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47049009	47049009	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145508731	145508731	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120383062	120383062	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19334879	19334879	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00182	100302692	broad.mit.edu	37	X	73406702	73406703	+	Intron	DNP	GG	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23931360	23931360	+	3'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23932116	23932116	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST3	9348	broad.mit.edu	37	4	118976096	118976096	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115997446	115997446	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA4	4697	broad.mit.edu	37	7	10979834	10979834	+	5'Flank	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	55983408	55983408	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4	4734	broad.mit.edu	37	15	56142862	56142862	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEGR1	257194	broad.mit.edu	37	1	72646676	72646676	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK8	284086	broad.mit.edu	37	17	27069038	27069038	+	3'UTR	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45001031	45001031	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEURL4	84461	broad.mit.edu	37	17	7226812	7226813	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEXN	91624	broad.mit.edu	37	1	78399075	78399075	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC3	4775	broad.mit.edu	37	16	68215480	68215480	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101571489	101571489	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33370040	33370040	+	3'UTR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	36986345	36986345	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56413553	56413553	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS3	4846	broad.mit.edu	37	7	150696413	150696413	+	Silent	SNP	G	A	A	rs144299379		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32170317	32170317	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS3	64067	broad.mit.edu	37	14	33684503	33684503	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPL1	79716	broad.mit.edu	37	20	57269554	57269554	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPR1	4881	broad.mit.edu	37	1	153665941	153665941	+	3'UTR	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34873879	34873879	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPVF	64111	broad.mit.edu	37	7	25266430	25266430	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A3	8013	broad.mit.edu	37	9	102594880	102594880	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200080524	200080524	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200143263	200143263	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107872762	107872762	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16338568	16338568	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5DC3	51559	broad.mit.edu	37	12	104179087	104179087	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTHL1	4913	broad.mit.edu	37	16	2094511	2094511	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132016415	132016415	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132184465	132184465	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88476242	88476242	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88576096	88576096	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTSR1	4923	broad.mit.edu	37	20	61340877	61340877	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUCB2	4925	broad.mit.edu	37	11	17332935	17332935	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT13	25961	broad.mit.edu	37	10	74882005	74882005	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37331778	37331778	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37358354	37358354	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NVL	4931	broad.mit.edu	37	1	224468739	224468739	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228401911	228401912	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228475809	228475809	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15107484	15107484	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN3	23596	broad.mit.edu	37	1	241760927	241760927	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPN5	221391	broad.mit.edu	37	6	47779311	47779312	+	Intron	INS	-	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735551	55735551	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H4	390442	broad.mit.edu	37	14	20711254	20711254	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835530	247835530	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J4	26219	broad.mit.edu	37	9	125281954	125281954	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A25	392138	broad.mit.edu	37	7	143771977	143771977	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2AG1	144125	broad.mit.edu	37	11	6806724	6806724	+	Silent	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695885	247695885	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248138752	248138752	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M1P	388762	broad.mit.edu	37	1	248285864	248285864	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248789984	248789984	+	Frame_Shift_Del	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T2	401992	broad.mit.edu	37	1	248616110	248616110	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A15	81328	broad.mit.edu	37	11	55135609	55135609	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404218	20404218	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20389218	20389218	+	Silent	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20248811	20248811	+	Silent	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51D1	390038	broad.mit.edu	37	11	4660921	4660921	+	5'Flank	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221702	5221702	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5AR1	219493	broad.mit.edu	37	11	56431719	56431719	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H15	403274	broad.mit.edu	37	3	97887954	97887954	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344905	56344905	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M3	219482	broad.mit.edu	37	11	56237377	56237377	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258337	56258337	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C76	390326	broad.mit.edu	37	12	55820133	55820133	+	Silent	SNP	G	T	T	rs143110732	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517680	158517680	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G1	125962	broad.mit.edu	37	19	9226295	9226295	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8A1	390275	broad.mit.edu	37	11	124440496	124440496	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8D2	283160	broad.mit.edu	37	11	124189176	124189176	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56125161	56125161	+	5'Flank	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904311	55904311	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8K3	219473	broad.mit.edu	37	11	56085806	56085806	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G9	504191	broad.mit.edu	37	11	56468595	56468595	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSMR	9180	broad.mit.edu	37	5	38883862	38883862	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOF	9381	broad.mit.edu	37	2	26750670	26750670	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29592260	29592260	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX1	5023	broad.mit.edu	37	17	3807020	3807020	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HA2	8974	broad.mit.edu	37	5	131544999	131544999	+	Silent	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK3	5063	broad.mit.edu	37	X	110395577	110395577	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9546888	9546888	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35513733	35513733	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39591139	39591139	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176525551	176525551	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176563697	176563697	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176563851	176563851	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3	56288	broad.mit.edu	37	10	34739444	34739444	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARG	8505	broad.mit.edu	37	10	51483056	51483056	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP3	10039	broad.mit.edu	37	3	51978185	51978185	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX1	5075	broad.mit.edu	37	20	21686967	21686967	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140248772	140248772	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA11	56138	broad.mit.edu	37	5	140250061	140250061	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140230312	140230312	+	Silent	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB11	56125	broad.mit.edu	37	5	140580418	140580418	+	Silent	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB13	56123	broad.mit.edu	37	5	140594856	140594856	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559862	140559862	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB9	56127	broad.mit.edu	37	5	140568793	140568793	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140720932	140720932	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140734678	140734678	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA7	56108	broad.mit.edu	37	5	140764549	140764549	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140730944	140730944	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB2	56103	broad.mit.edu	37	5	140740261	140740261	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140779511	140779511	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82508557	82508557	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK2	5126	broad.mit.edu	37	20	17445902	17445902	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165806029	165806030	+	Intron	DEL	TG	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165806385	165806385	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31793199	31793199	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149311801	149311801	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149312189	149312189	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149312214	149312214	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE8A	5151	broad.mit.edu	37	15	85657227	85657227	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDILT	204474	broad.mit.edu	37	16	20381072	20381072	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	98041615	98041615	+	Intron	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF17	79960	broad.mit.edu	37	4	129782741	129782741	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34505614	34505614	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHIPL	84457	broad.mit.edu	37	10	60994099	60994099	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21084035	21084035	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3AP1	118788	broad.mit.edu	37	10	98383299	98383299	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8808353	8808353	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PINX1	54984	broad.mit.edu	37	8	10622935	10622935	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1B	8395	broad.mit.edu	37	9	71532569	71532569	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP5K1C	23396	broad.mit.edu	37	19	3638995	3638995	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2158369	2158369	+	Missense_Mutation	SNP	C	A	A	rs148069029	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51612663	51612663	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186862034	186862034	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G7	7941	broad.mit.edu	37	6	46676981	46676981	+	Intron	DEL	A	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC1L	219990	broad.mit.edu	37	11	59814583	59814583	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9364988	9364988	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949706	198949706	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD1	5337	broad.mit.edu	37	3	171426594	171426594	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	132109545	132109545	+	Intron	SNP	G	T	T	rs117900193	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43992451	43992451	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23695377	23695377	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72188044	72188044	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMPCA	23203	broad.mit.edu	37	9	139306774	139306774	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMPCB	9512	broad.mit.edu	37	7	102944535	102944535	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76619480	76619480	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP1	5407	broad.mit.edu	37	10	118368610	118368610	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118313347	118313347	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7621679	7621679	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA2	23649	broad.mit.edu	37	11	65048471	65048471	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133256531	133256531	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2D	5433	broad.mit.edu	37	2	128608189	128608189	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106889962	106889962	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT2	29954	broad.mit.edu	37	14	77765710	77765710	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMZP3	22932	broad.mit.edu	37	7	76247599	76247599	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POP4	10775	broad.mit.edu	37	19	30097258	30097258	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEF	728378	broad.mit.edu	37	2	130877729	130877729	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19571455	19571455	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEH	23784	broad.mit.edu	37	22	16287151	16287151	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1B	133522	broad.mit.edu	37	5	149206292	149206292	+	Frame_Shift_Del	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18748515	18748515	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76805631	76805631	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPID	5481	broad.mit.edu	37	4	159638396	159638396	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170493101	170493101	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPL	5493	broad.mit.edu	37	16	4935985	4935985	+	Missense_Mutation	SNP	C	T	T	rs35869286	byFrequency;by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1B	5495	broad.mit.edu	37	2	44428764	44428764	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R12A	4659	broad.mit.edu	37	12	80169698	80169698	+	3'UTR	DEL	T	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146070760	146070760	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3A	5523	broad.mit.edu	37	3	135720271	135720271	+	5'UTR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPT1	5538	broad.mit.edu	37	1	40542717	40542717	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70980285	70980285	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM4	11108	broad.mit.edu	37	12	108138465	108138465	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68950644	68950644	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68967939	68967939	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAG2	51422	broad.mit.edu	37	7	151262371	151262371	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKAR2B	5577	broad.mit.edu	37	7	106768848	106768848	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30194637	30194637	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD2	25865	broad.mit.edu	37	19	47200387	47200387	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	54040698	54040698	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20529774	20529774	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRND	23627	broad.mit.edu	37	20	4705047	4705047	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95953256	95953256	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38B	55119	broad.mit.edu	37	1	109235396	109235396	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF38B	55119	broad.mit.edu	37	1	109238948	109238948	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40B	25766	broad.mit.edu	37	12	50037148	50037148	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRRG3	79057	broad.mit.edu	37	X	150869017	150869017	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS37	136242	broad.mit.edu	37	7	141537763	141537763	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS3	5646	broad.mit.edu	37	9	33797891	33797891	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS41	360226	broad.mit.edu	37	16	2854924	2854924	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRUNE	58497	broad.mit.edu	37	1	150980988	150980988	+	5'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43422078	43422079	+	5'Flank	DNP	GG	TC	TC			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43576602	43576602	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43586697	43586697	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43773541	43773541	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA4	5685	broad.mit.edu	37	15	78841086	78841093	+	Intron	DEL	TGCCTGCC	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA7	5688	broad.mit.edu	37	20	60713265	60713265	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSPH	5723	broad.mit.edu	37	7	56174054	56174054	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71437518	71437518	+	Intron	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGIS	5740	broad.mit.edu	37	20	48130834	48130834	+	Frame_Shift_Del	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK7	5754	broad.mit.edu	37	6	43127622	43127622	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112890950	112890950	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70925736	70925736	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRB	5787	broad.mit.edu	37	12	70989842	70989842	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198691572	198691572	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198723644	198723644	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8341037	8341037	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8465465	8465465	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8486068	8486068	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRH	5794	broad.mit.edu	37	19	55702949	55702949	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128403663	128403663	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71054789	71054789	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40709434	40709434	+	3'UTR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40733211	40733211	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41076722	41076722	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41076865	41076866	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	41101120	41101120	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29644213	29644213	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29647149	29647149	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52258433	52258433	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52287312	52287312	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1691403	1691403	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXK	54899	broad.mit.edu	37	3	58368428	58368428	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGB	5834	broad.mit.edu	37	20	25273031	25273031	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ProSAPiP1	9762	broad.mit.edu	37	20	3146123	3146123	+	Intron	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	57913383	57913383	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3C	115827	broad.mit.edu	37	5	58022099	58022099	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB8A	4218	broad.mit.edu	37	19	16222843	16222843	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB9BP1	9366	broad.mit.edu	37	5	104435726	104435726	+	RNA	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGAP1L	9910	broad.mit.edu	37	1	174652687	174652687	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76253373	76253373	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL3	285282	broad.mit.edu	37	3	120449566	120449566	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36596358	36596358	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG2	5897	broad.mit.edu	37	11	36615026	36615026	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36018448	36018448	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36154336	36154336	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178425834	178425834	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114385123	114385123	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM27	54439	broad.mit.edu	37	5	145610502	145610502	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM28	55131	broad.mit.edu	37	7	127950789	127950789	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG4	83998	broad.mit.edu	37	1	120337200	120337200	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103215883	103215883	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REL	5966	broad.mit.edu	37	2	61145520	61145520	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN1	23180	broad.mit.edu	37	3	16475526	16475526	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX5	5993	broad.mit.edu	37	1	151316173	151316173	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD1	400966	broad.mit.edu	37	2	87211874	87211875	+	Splice_Site	INS	-	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS13	6003	broad.mit.edu	37	1	192613655	192613655	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS1	5996	broad.mit.edu	37	1	192544966	192544966	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS20	8601	broad.mit.edu	37	8	54866724	54866724	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS6	9628	broad.mit.edu	37	14	72921106	72921106	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIF1	55183	broad.mit.edu	37	2	152317652	152317652	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130898862	130898862	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21044115	21044115	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87106022	87106022	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87866205	87866205	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31406916	31406916	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF144B	255488	broad.mit.edu	37	6	18406460	18406460	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF185	91445	broad.mit.edu	37	22	31597539	31597539	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78763638	78763638	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11448622	11448622	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1	54763	broad.mit.edu	37	3	123699363	123699363	+	5'UTR	SNP	C	A	A	rs140275553	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94486620	94486620	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10473996	10473996	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68903886	68903886	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL13AP6	644511	broad.mit.edu	37	10	112696542	112696542	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL18	6141	broad.mit.edu	37	19	49120496	49120496	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPLP0	6175	broad.mit.edu	37	12	120636414	120636414	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP1	8568	broad.mit.edu	37	21	45212667	45212667	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237619789	237619789	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237656366	237656366	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237780736	237780736	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134993770	134993770	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD13	148418	broad.mit.edu	37	1	84815206	84815206	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92734591	92734591	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44372572	44372572	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15882882	15882882	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAR1B	51128	broad.mit.edu	37	5	133948372	133948372	+	Intron	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SARM1	23098	broad.mit.edu	37	17	26691685	26691685	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCML2	10389	broad.mit.edu	37	X	18276282	18276282	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38833767	38833767	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835299	38835299	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38951598	38951598	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165952085	165952085	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4B	6330	broad.mit.edu	37	11	118015705	118015705	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38591730	38591730	+	3'UTR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144874009	144874009	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN2	90507	broad.mit.edu	37	17	45916152	45916152	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG1	9147	broad.mit.edu	37	14	50304947	50304947	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG3	10807	broad.mit.edu	37	9	139299578	139299578	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23B	10483	broad.mit.edu	37	20	18516491	18516491	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC24A	10802	broad.mit.edu	37	5	134032792	134032792	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13971033	13971033	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3G	56920	broad.mit.edu	37	3	52474720	52474720	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4G	57715	broad.mit.edu	37	10	102732998	102732998	+	Silent	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9066560	9066560	+	Missense_Mutation	SNP	C	G	G	rs139823470	byFrequency	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48052237	48052237	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP2	59343	broad.mit.edu	37	3	185330390	185330391	+	Intron	DEL	CA	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPHS1	22929	broad.mit.edu	37	10	13380835	13380835	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT3	55964	broad.mit.edu	37	22	42377700	42377700	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA5	5104	broad.mit.edu	37	14	95057023	95057023	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA7	6906	broad.mit.edu	37	X	105280957	105280957	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPING1	710	broad.mit.edu	37	11	57382045	57382045	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETX	23064	broad.mit.edu	37	9	135158816	135158816	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF1	7536	broad.mit.edu	37	11	64536732	64536732	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37951860	37951860	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS18	25957	broad.mit.edu	37	6	99857222	99857222	+	Splice_Site	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFTPB	6439	broad.mit.edu	37	2	85894336	85894336	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51207298	51207298	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHB	6461	broad.mit.edu	37	9	37974575	37974575	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC1	6464	broad.mit.edu	37	1	154940998	154940998	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC3	53358	broad.mit.edu	37	9	91653014	91653014	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146248482	146248482	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHROOM4	57477	broad.mit.edu	37	X	50350458	50350458	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK1	150094	broad.mit.edu	37	21	44838254	44838254	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164748524	164748524	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A7	84068	broad.mit.edu	37	4	147438205	147438205	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100460369	100460369	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A4	9122	broad.mit.edu	37	1	110918224	110918224	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A7	9194	broad.mit.edu	37	12	60098908	60098908	+	Intron	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A11	55867	broad.mit.edu	37	11	64331817	64331817	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110763979	110763979	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92374424	92374424	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC27A4	10999	broad.mit.edu	37	9	131114893	131114893	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A9	56606	broad.mit.edu	37	4	9982270	9982270	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176824679	176824679	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79246366	79246366	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18270151	18270151	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A1	6519	broad.mit.edu	37	2	44547563	44547563	+	Missense_Mutation	SNP	C	T	T	rs121912696		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A3	54946	broad.mit.edu	37	3	125727506	125727506	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC43A3	29015	broad.mit.edu	37	11	57176804	57176804	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220500015	220500015	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A3	6526	broad.mit.edu	37	21	35469352	35469352	+	Silent	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32890918	32890918	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A10P	386757	broad.mit.edu	37	16	32893977	32893977	+	5'Flank	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10861574	10861574	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A13	6540	broad.mit.edu	37	12	368910	368910	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A14	11254	broad.mit.edu	37	X	115590106	115590106	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1221988	1221988	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A10	285335	broad.mit.edu	37	3	111950283	111950283	+	Silent	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20874724	20874724	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLFN12	55106	broad.mit.edu	37	17	33738843	33738843	+	Silent	SNP	G	A	A	rs112295255		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20542995	20542995	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168135053	168135053	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168175101	168175101	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168180939	168180939	+	Missense_Mutation	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK4	139065	broad.mit.edu	37	X	142716612	142716612	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK6	84189	broad.mit.edu	37	13	86369960	86369960	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLMO1	10650	broad.mit.edu	37	18	12427196	12427196	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD4	4089	broad.mit.edu	37	18	48591909	48591909	+	Nonsense_Mutation	SNP	G	T	T	rs121912576		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCAL1	50485	broad.mit.edu	37	2	217340026	217340026	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD1	6602	broad.mit.edu	37	12	50490683	50490683	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAI2	6591	broad.mit.edu	37	8	49833644	49833645	+	Intron	DNP	TG	AT	AT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84417473	84417473	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNHG12	85028	broad.mit.edu	37	1	28906908	28906908	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121587221	121587221	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51569657	51569657	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108447928	108447928	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORL1	6653	broad.mit.edu	37	11	121391515	121391515	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231331929	231331929	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP110	3431	broad.mit.edu	37	2	231076245	231076245	+	Frame_Shift_Del	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP1	6667	broad.mit.edu	37	12	53804598	53804598	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP4	6671	broad.mit.edu	37	7	21521652	21521652	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22700044	22700045	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN3	139067	broad.mit.edu	37	X	142605295	142605295	+	5'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATC1	375686	broad.mit.edu	37	8	145095304	145095304	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35712824	35712824	+	Intron	SNP	A	T	T	rs111691682		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220312669	220312669	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44862614	44862614	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK1	6695	broad.mit.edu	37	5	136602831	136602831	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	167658831	167658831	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL2A	84888	broad.mit.edu	37	15	51018680	51018680	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607815	158607815	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158644008	158644008	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158646209	158646209	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A1	6715	broad.mit.edu	37	5	6668412	6668412	+	3'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP2	23380	broad.mit.edu	37	1	206610201	206610201	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182794337	182794337	+	3'UTR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX2IP	117178	broad.mit.edu	37	1	85129904	85129904	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53124719	53124719	+	Intron	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53126806	53126806	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL3	6487	broad.mit.edu	37	1	44257712	44257712	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB1	23166	broad.mit.edu	37	3	52536690	52536690	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104060050	104060050	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104081786	104081786	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99802969	99802969	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAM2	10254	broad.mit.edu	37	2	152980525	152980525	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBP	10617	broad.mit.edu	37	2	74074993	74074993	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	121100283	121100283	+	Missense_Mutation	SNP	G	T	T	rs17740066	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP6	29091	broad.mit.edu	37	14	25444047	25444047	+	5'UTR	SNP	C	A	A	rs139809980	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1B1	27284	broad.mit.edu	37	4	70599131	70599131	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	888109	888109	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27005004	27005004	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVIL	6840	broad.mit.edu	37	10	29801632	29801632	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58440721	58440721	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152489339	152489339	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152651069	152651069	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152722272	152722272	+	Splice_Site	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE2	23224	broad.mit.edu	37	14	64465095	64465095	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33529782	33529782	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR1	134864	broad.mit.edu	37	6	132967082	132967082	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR5	9038	broad.mit.edu	37	6	132910326	132910326	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR9	134860	broad.mit.edu	37	6	132860409	132860409	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC2	10579	broad.mit.edu	37	10	123845207	123845207	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF9	6880	broad.mit.edu	37	5	68662287	68662288	+	Intron	INS	-	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARP	445347	broad.mit.edu	37	7	38313335	38313335	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635158	122635158	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R30	259293	broad.mit.edu	37	12	11286554	11286554	+	Nonsense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13373497	13373497	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAZ	6901	broad.mit.edu	37	X	153649130	153649130	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72314680	72314681	+	Intron	DNP	TC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D1	23216	broad.mit.edu	37	4	38117271	38117271	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D29	26083	broad.mit.edu	37	17	28883890	28883890	+	5'Flank	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3P2	440452	broad.mit.edu	37	17	60342471	60342471	+	RNA	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3P2	440452	broad.mit.edu	37	17	60351469	60351469	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36288039	36288039	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106083812	106083812	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCB	1155	broad.mit.edu	37	19	36611762	36611762	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBL3	10607	broad.mit.edu	37	16	2026981	2026981	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162279909	162279909	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114841432	114841432	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCF3	6929	broad.mit.edu	37	19	1627466	1627466	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP10	6953	broad.mit.edu	37	6	167791289	167791289	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156841131	156841131	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT2	27285	broad.mit.edu	37	1	36553831	36553831	+	3'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30701942	30701942	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFIP11	24144	broad.mit.edu	37	22	26892178	26892178	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFIP11	24144	broad.mit.edu	37	22	26902951	26902951	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1I1	7041	broad.mit.edu	37	16	31485912	31485912	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133947998	133947998	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THADA	63892	broad.mit.edu	37	2	43514104	43514104	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169626293	169626293	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEG	51298	broad.mit.edu	37	19	375777	375777	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC2	57187	broad.mit.edu	37	X	122747510	122747510	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11445871	11445871	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32554688	32554688	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155451515	155451515	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM2	26230	broad.mit.edu	37	6	155532366	155532366	+	Silent	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIE1	7075	broad.mit.edu	37	1	43773124	43773124	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156381592	156381592	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30020222	30020222	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394038	164394038	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC6	11322	broad.mit.edu	37	17	76115333	76115333	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEFF1	8577	broad.mit.edu	37	9	103338820	103338820	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75968408	75968408	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75969253	75969253	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM38A	79041	broad.mit.edu	37	19	16799120	16799120	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63C	57156	broad.mit.edu	37	14	77685276	77685276	+	Silent	SNP	C	A	A	rs147741741	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42525510	42525510	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD1	7111	broad.mit.edu	37	9	100324934	100324934	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19653215	19653215	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS2	7113	broad.mit.edu	37	21	42861483	42861483	+	Silent	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29664947	29664947	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29665010	29665010	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29736464	29736464	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117810677	117810677	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNC	3371	broad.mit.edu	37	9	117827204	117827204	+	Intron	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1B	7133	broad.mit.edu	37	1	12267131	12267131	+	3'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF14	8740	broad.mit.edu	37	19	6667508	6667508	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT2	7139	broad.mit.edu	37	1	201334198	201334198	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175332952	175332952	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP3A	7156	broad.mit.edu	37	17	18194199	18194199	+	Missense_Mutation	SNP	C	T	T	rs144590444		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53RK	112858	broad.mit.edu	37	20	45315857	45315857	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	A	A	rs28934576	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1491806	1491806	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934954	10934954	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP1	26146	broad.mit.edu	37	2	239234561	239234561	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202275714	202275714	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141294041	141294041	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73046866	73046866	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM24	8805	broad.mit.edu	37	7	138268772	138268772	+	Intron	SNP	G	T	T	rs140743487	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM50	135892	broad.mit.edu	37	7	72727232	72727232	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM68	55128	broad.mit.edu	37	11	4622220	4622220	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189061773	189061773	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189064958	189064958	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14369489	14369489	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP11	9321	broad.mit.edu	37	14	92484063	92484063	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIP6	7205	broad.mit.edu	37	7	100465727	100465727	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC5	7224	broad.mit.edu	37	X	111097033	111097033	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM1	4308	broad.mit.edu	37	15	31320613	31320613	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116631304	116631304	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116632061	116632061	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142627249	142627249	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142572925	142572925	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC1	7248	broad.mit.edu	37	9	135787664	135787664	+	Intron	SNP	T	C	C	rs118203467		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2105535	2105535	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2112113	2112114	+	Intron	INS	-	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2130310	2130310	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN12	23554	broad.mit.edu	37	7	120496858	120496858	+	5'UTR	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPYL5	85453	broad.mit.edu	37	8	98288650	98288650	+	3'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180322691	180322691	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC17	55761	broad.mit.edu	37	11	43465039	43465039	+	Missense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166747254	166747254	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC38	55020	broad.mit.edu	37	22	46684477	46684477	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117626717	117626717	+	Nonsense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80741183	80741183	+	Splice_Site	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL11	158135	broad.mit.edu	37	9	124751595	124751595	+	Missense_Mutation	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179411766	179411766	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179428592	179428592	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179435906	179435906	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179571692	179571692	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB1	81027	broad.mit.edu	37	20	57599325	57599325	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBGCP6	85378	broad.mit.edu	37	22	50656678	50656678	+	Missense_Mutation	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37907199	37907199	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72242352	72242352	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP2L	9898	broad.mit.edu	37	1	154229505	154229505	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2K	3093	broad.mit.edu	37	4	39771668	39771668	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2MP1	606551	broad.mit.edu	37	16	34404275	34404275	+	RNA	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN4	23190	broad.mit.edu	37	2	136511140	136511140	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT1	56886	broad.mit.edu	37	2	128870688	128870688	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A5	54579	broad.mit.edu	37	2	234676909	234676909	+	Missense_Mutation	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B10	7365	broad.mit.edu	37	4	69870882	69870882	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69513259	69513259	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF2	115426	broad.mit.edu	37	9	6486881	6486881	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54592569	54592569	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54919052	54919052	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176295775	176295775	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35579917	35579917	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167708042	167708042	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773791	229773791	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
URB2	9816	broad.mit.edu	37	1	229773793	229773793	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216256822	216256822	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216262565	216262565	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216538493	216538493	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113675615	113675615	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP29	57663	broad.mit.edu	37	19	57642902	57642902	+	3'UTR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP39	10713	broad.mit.edu	37	2	85875930	85875930	+	Nonstop_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP48	84196	broad.mit.edu	37	1	22032301	22032301	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP18	51096	broad.mit.edu	37	17	49353256	49353256	+	Missense_Mutation	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38536916	38536916	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46204127	46204127	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8662248	8662248	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	133734977	133734977	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	14929484	14929484	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17250423	17250423	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	1824540	1824540	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	29548067	29548067	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	33258775	33258775	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48967483	48967483	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49002915	49002915	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49090504	49090504	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49860782	49860782	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49867088	49867088	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50147250	50147250	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198281	55198281	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56064717	56064717	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56216554	56216555	+	IGR	DNP	GG	TA	TA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56257899	56257899	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56268539	56268539	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59055315	59055315	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	9652775	9652775	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	25956653	25956653	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55706428	55706428	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75057649	75057649	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	76531106	76531106	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80733009	80733009	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19701156	19701156	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	21523086	21523086	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	44544497	44544497	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	62902215	62902215	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	63754411	63754411	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	67841265	67841265	+	IGR	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928472	86928472	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90823813	90823813	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19114452	19114452	+	IGR	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19412073	19412073	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806567	19806567	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084532	20084532	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45330425	45330425	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45333215	45333215	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	61038746	61038746	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96102932	96102932	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	23468557	23468557	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	96984825	96984825	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	27145208	27145208	+	IGR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32443228	32443228	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33402128	33402128	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605427	33605427	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34339107	34339107	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	57355964	57355964	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	59788606	59788606	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14683608	14683608	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20628171	20628171	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33786837	33786837	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	60324236	60324236	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11621140	11621140	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12192429	12192429	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	33422546	33422546	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57684525	57684525	+	IGR	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	70286367	70286367	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	75148672	75148672	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	19946554	19946554	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23032092	23032092	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149340617	149340617	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158493442	158493442	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166717851	166717851	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	168338881	168338881	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115784	191115784	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406123	209406123	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240176402	240176402	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247393429	247393429	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	27310441	27310441	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	40261554	40261554	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	41730436	41730436	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96912587	96912587	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10862535	10862535	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181739	11181739	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900913	14900913	+	IGR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617973	20617973	+	IGR	SNP	C	A	A	rs151177663	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	22200402	22200402	+	IGR	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24780981	24780981	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16123771	16123771	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16352335	16352335	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107009141	107009141	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114415918	114415918	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154448	154448	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17566810	17566810	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	204638061	204638061	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	206813909	206813909	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91766681	91766681	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91795630	91795630	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116746409	116746409	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	181584872	181584872	+	IGR	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	18580824	18580824	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	192874002	192874002	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	195281778	195281778	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74185414	74185415	+	IGR	DNP	CC	AA	AA			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	97916505	97916505	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98378081	98378081	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109340706	109340706	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116964844	116964844	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174555498	174555498	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182827247	182827247	+	IGR	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	45611619	45611619	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	130330294	130330294	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	135764781	135764781	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14640286	14640286	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25910118	25910118	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25911299	25911299	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	33090388	33090388	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	76878295	76878295	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	106115191	106115191	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	113543705	113543705	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	130122696	130122696	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	13522176	13522176	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	145813062	145813062	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29385494	29385494	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39926123	39926123	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85139582	85139582	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	85996147	85996147	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	92525752	92525752	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109638769	109638769	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399927	136399927	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143815810	143815810	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144737273	144737273	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148751233	148751233	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55706011	55706011	+	IGR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216619	57216619	+	IGR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216685	57216685	+	IGR	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62520516	62520516	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62693536	62693536	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62694526	62694526	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	75803697	75803697	+	IGR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194745	88194745	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	130486415	130486415	+	IGR	SNP	G	T	T	rs113066473		TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47491080	47491080	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50652737	50652737	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	82539553	82539553	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85074779	85074779	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	103493915	103493915	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109485289	109485289	+	IGR	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109879277	109879277	+	IGR	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109932699	109932699	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44109462	44109462	+	IGR	SNP	T	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68316110	68316110	+	IGR	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90804705	90804705	+	IGR	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134745517	134745517	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	137565745	137565745	+	IGR	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37004062	37004062	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48183922	48183922	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	57705869	57705869	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	6340279	6340279	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	72745706	72745706	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74804438	74804438	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	74964455	74964455	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	80845486	80845486	+	IGR	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	970800	970800	+	IGR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAMP4	8674	broad.mit.edu	37	1	171673540	171673540	+	3'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VANGL1	81839	broad.mit.edu	37	1	116206455	116206455	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6825423	6825423	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108138841	108138841	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101190386	101190386	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAM1	7412	broad.mit.edu	37	1	101200327	101200327	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82816655	82816655	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82832691	82832691	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCP	7415	broad.mit.edu	37	9	35061054	35061054	+	Silent	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	86996337	86996337	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VKORC1	79001	broad.mit.edu	37	16	31105880	31105880	+	Silent	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134114737	134114737	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS33A	65082	broad.mit.edu	37	12	122748448	122748448	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS37C	55048	broad.mit.edu	37	11	60906352	60906352	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTCN1	79679	broad.mit.edu	37	1	117715128	117715128	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWC2L	402117	broad.mit.edu	37	2	215301400	215301400	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWCE	220001	broad.mit.edu	37	11	61058828	61058828	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27151879	27151879	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF3	10810	broad.mit.edu	37	13	27255391	27255391	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	71036441	71036441	+	Intron	DEL	G	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85701425	85701425	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177046589	177046589	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR1	9948	broad.mit.edu	37	4	10076965	10076965	+	3'UTR	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117532434	117532434	+	Splice_Site	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109525411	109525411	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109553411	109553411	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124138434	124138434	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR70	55100	broad.mit.edu	37	5	37438088	37438088	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54694412	54694412	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141419104	141419104	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	968345	968345	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK4	65266	broad.mit.edu	37	17	40932642	40932642	+	5'Flank	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108589971	108589971	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32413444	32413444	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XCL2	6846	broad.mit.edu	37	1	168510484	168510484	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31628752	31628752	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168099835	168099835	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPNPEP1	7511	broad.mit.edu	37	10	111648231	111648231	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217057340	217057340	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN2	22803	broad.mit.edu	37	20	21324713	21324713	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135744679	135744679	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3HAV1L	92092	broad.mit.edu	37	7	138713709	138713709	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC6	79670	broad.mit.edu	37	9	88957850	88957850	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207172542	207172542	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP41	286128	broad.mit.edu	37	8	144332657	144332657	+	3'UTR	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106815565	106815565	+	Silent	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE26	23503	broad.mit.edu	37	14	68222716	68222716	+	Silent	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44611518	44611518	+	Missense_Mutation	SNP	C	T	T	rs146457545	by1000genomes	TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF17	7565	broad.mit.edu	37	19	57929097	57929097	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF187	7741	broad.mit.edu	37	6	28244327	28244327	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF248	57209	broad.mit.edu	37	10	38120853	38120853	+	Nonsense_Mutation	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271585	22271585	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF280B	140883	broad.mit.edu	37	22	22843071	22843071	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF322B	387328	broad.mit.edu	37	9	99961594	99961594	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF341	84905	broad.mit.edu	37	20	32354566	32354566	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF347	84671	broad.mit.edu	37	19	53657127	53657127	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF385D	79750	broad.mit.edu	37	3	21478546	21478546	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF395	55893	broad.mit.edu	37	8	28214174	28214174	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF474	133923	broad.mit.edu	37	5	121488479	121488479	+	Missense_Mutation	SNP	A	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57194386	57194386	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF492	57615	broad.mit.edu	37	19	22847441	22847441	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF502	91392	broad.mit.edu	37	3	44762277	44762277	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934598	30934598	+	Silent	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31039771	31039771	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71650950	71650950	+	Missense_Mutation	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56969662	56969662	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF681	148213	broad.mit.edu	37	19	23927877	23927877	+	Nonsense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF701	55762	broad.mit.edu	37	19	53085491	53085491	+	Missense_Mutation	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF716	441234	broad.mit.edu	37	7	57522940	57522940	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF768	79724	broad.mit.edu	37	16	30537540	30537540	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF790	388536	broad.mit.edu	37	19	37314698	37314698	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803511	185803511	+	Missense_Mutation	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146806894	146806894	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF830	91603	broad.mit.edu	37	17	33289356	33289356	+	Silent	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF3	84133	broad.mit.edu	37	22	29438580	29438580	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP2	7783	broad.mit.edu	37	16	21214691	21214691	+	Intron	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136103032	136103032	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43190023	43190023	+	5'Flank	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31099295	31099295	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101490213	101490213	+	5'Flank	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22090691	22090691	+	Missense_Mutation	SNP	C	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22279846	22279846	+	Intron	DEL	T	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22466152	22466152	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22480639	22480639	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102291945	102291945	+	Missense_Mutation	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	28902492	28902492	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	88620487	88620487	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26598263	26598263	+	5'Flank	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	45158148	45158148	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14220038	14220038	+	5'Flank	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22780304	22780304	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23329182	23329182	+	RNA	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142826587	142826588	+	Intron	INS	-	TC	TC			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142826663	142826663	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142826677	142826677	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	21754161	21754161	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133074794	133074794	+	Intron	SNP	G	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	203044467	203044467	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	65728115	65728115	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89246715	89246715	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89534247	89534247	+	Intron	DEL	C	-	-			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90060326	90060326	+	Intron	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108620	90108620	+	Intron	SNP	A	G	G			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90122050	90122051	+	RNA	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90139632	90139633	+	Intron	DNP	GG	TT	TT			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90212229	90212229	+	RNA	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90229254	90229254	+	Intron	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90260163	90260163	+	RNA	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	905875	905875	+	5'Flank	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	95374332	95374332	+	RNA	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	118346191	118346191	+	Intron	SNP	T	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	133998275	133998275	+	Intron	SNP	C	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100553107	100553107	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136848928	136848928	+	RNA	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142013550	142013550	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142104227	142104227	+	Intron	SNP	G	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142104318	142104318	+	Intron	SNP	T	C	C			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142470786	142470786	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471785	142471786	+	Intron	INS	-	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39894469	39894469	+	RNA	SNP	A	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84676472	84676472	+	Intron	SNP	G	T	T			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150411	51150411	+	Silent	SNP	C	A	A			TCGA-38-4625-01A-01D-1553-08	TCGA-38-4625-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
