Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
ABCA4	24	broad.mit.edu	37	1	94544956	94544956	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89052431	89052431	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89052431	89052431	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD13	84945	broad.mit.edu	37	13	108881533	108881533	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185968	127185968	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTRT1	139741	broad.mit.edu	37	X	127185968	127185968	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42849012	42849012	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM11	4185	broad.mit.edu	37	17	42849012	42849012	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207406809	207406809	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207406809	207406809	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106013236	106013236	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106013236	106013236	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33892007	33892007	+	5'UTR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33892007	33892007	+	5'UTR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5237117	5237117	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5237117	5237117	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18639427	18639427	+	Intron	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167873176	167873176	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159344165	159344165	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRA1B	147	broad.mit.edu	37	5	159344165	159344165	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116056837	116056837	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFAP1L2	84632	broad.mit.edu	37	10	116056837	116056837	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129062859	129062859	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCYL2	23382	broad.mit.edu	37	7	129062859	129062859	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3B2	222	broad.mit.edu	37	11	67450317	67450317	+	5'Flank	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113348782	113348782	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113348782	113348782	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC5	51433	broad.mit.edu	37	12	121790215	121790215	+	5'UTR	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC5	51433	broad.mit.edu	37	12	121790215	121790215	+	5'UTR	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37506654	37506654	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37506654	37506654	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101460595	101460595	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101460595	101460595	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARIH2	10425	broad.mit.edu	37	3	49020264	49020264	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARIH2	10425	broad.mit.edu	37	3	49020264	49020264	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPM1	84517	broad.mit.edu	37	3	169487268	169487268	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARPM1	84517	broad.mit.edu	37	3	169487268	169487268	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	122953875	122953875	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAM	79827	broad.mit.edu	37	11	122953875	122953875	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197071942	197071942	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197071942	197071942	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55373902	55373902	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPIL3	128859	broad.mit.edu	37	20	31621831	31621831	+	Intron	DEL	T	-	-	rs112771934		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922493	24922493	+	Silent	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf22	79863	broad.mit.edu	37	18	77798637	77798637	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf22	79863	broad.mit.edu	37	18	77798637	77798637	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35751846	35751846	+	Intron	DEL	A	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3AR1	719	broad.mit.edu	37	12	8211356	8211356	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3AR1	719	broad.mit.edu	37	12	8211356	8211356	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54122049	54122049	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf142	90523	broad.mit.edu	37	6	54122049	54122049	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86360276	86360276	+	Missense_Mutation	SNP	G	T	T	rs142979911		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA3	761	broad.mit.edu	37	8	86360276	86360276	+	Missense_Mutation	SNP	G	T	T	rs142979911		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5A	763	broad.mit.edu	37	16	87927233	87927233	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5A	763	broad.mit.edu	37	16	87927233	87927233	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480759	181480759	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181480759	181480759	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219900114	219900114	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219900114	219900114	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC57	284001	broad.mit.edu	37	17	80159587	80159587	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC57	284001	broad.mit.edu	37	17	80159587	80159587	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC64	92558	broad.mit.edu	37	12	120494851	120494851	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC64	92558	broad.mit.edu	37	12	120494851	120494851	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884504	21884504	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884504	21884504	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH15	1013	broad.mit.edu	37	16	89245975	89245975	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH15	1013	broad.mit.edu	37	16	89245975	89245975	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73569657	73569657	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH23	64072	broad.mit.edu	37	10	73569657	73569657	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR3	222256	broad.mit.edu	37	7	105636781	105636781	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132481310	132481310	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD3	54927	broad.mit.edu	37	7	132481310	132481310	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21873432	21873432	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD8	57680	broad.mit.edu	37	14	21873432	21873432	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34355794	34355794	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34355794	34355794	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC2B	9976	broad.mit.edu	37	12	10010150	10010152	+	In_Frame_Del	DEL	CTT	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC2B	9976	broad.mit.edu	37	12	10010150	10010152	+	In_Frame_Del	DEL	CTT	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNRIP1	25927	broad.mit.edu	37	2	68544214	68544214	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNRIP1	25927	broad.mit.edu	37	2	68544214	68544214	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147336253	147336253	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147336253	147336253	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103461672	103461672	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103540213	103540213	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103461672	103461672	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103540213	103540213	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121221975	121221976	+	Intron	INS	-	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121221975	121221976	+	Intron	INS	-	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101817736	101817736	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28791658	28791658	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPD	1362	broad.mit.edu	37	17	28791658	28791658	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE6	9362	broad.mit.edu	37	14	24543955	24543955	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE6	9362	broad.mit.edu	37	14	24543955	24543955	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145622980	145622980	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145622980	145622980	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27024419	27024419	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBA4	1413	broad.mit.edu	37	22	27024419	27024419	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113657409	113657409	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113657409	113657409	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113662262	113662262	+	Intron	SNP	T	C	C	rs111558050	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSP2	10106	broad.mit.edu	37	12	58218485	58218485	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDSP2	10106	broad.mit.edu	37	12	58218485	58218485	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80646672	80646673	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80646672	80646673	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101848476	101848476	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101870706	101870706	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101848476	101848476	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101870706	101870706	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1B1	1545	broad.mit.edu	37	2	38302549	38302549	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP1B1	1545	broad.mit.edu	37	2	38302549	38302549	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX49	54555	broad.mit.edu	37	19	19035126	19035126	+	Intron	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126214667	126214667	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1A	57706	broad.mit.edu	37	9	126214667	126214667	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137151674	137151674	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137151674	137151674	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKQ	1609	broad.mit.edu	37	4	955735	955735	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13850862	13850862	+	Missense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13850862	13850862	+	Missense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22055047	22055047	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC1	64215	broad.mit.edu	37	10	22055047	22055047	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	426848	426848	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	426848	426848	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99537826	99537826	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115200395	115200395	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	115200395	115200395	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134015457	134015457	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134015457	134015457	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F6	1876	broad.mit.edu	37	2	11593783	11593783	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F6	1876	broad.mit.edu	37	2	11593783	11593783	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4G1	1981	broad.mit.edu	37	3	184034675	184034675	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD7	57089	broad.mit.edu	37	10	101458472	101458472	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD7	57089	broad.mit.edu	37	10	101458472	101458472	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERAS	3266	broad.mit.edu	37	X	48687962	48687962	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADD	8772	broad.mit.edu	37	11	70049737	70049737	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FADD	8772	broad.mit.edu	37	11	70049737	70049737	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153382469	153382469	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153382469	153382469	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135A	57579	broad.mit.edu	37	6	71266385	71266387	+	Intron	DEL	ATG	-	-	rs113383341		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48A	55578	broad.mit.edu	37	13	37618333	37618333	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48A	55578	broad.mit.edu	37	13	37618333	37618333	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24332300	24332300	+	5'Flank	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM48B2	170067	broad.mit.edu	37	X	24332300	24332300	+	5'Flank	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067324	190067324	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067324	190067324	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34174788	34174788	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34174788	34174788	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159667901	159667901	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159667901	159667901	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4796547	4796547	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4796547	4796547	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR2	139628	broad.mit.edu	37	X	55650322	55650322	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXR2	139628	broad.mit.edu	37	X	55650322	55650322	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1B	284802	broad.mit.edu	37	20	29612029	29612029	+	5'Flank	SNP	G	A	A	rs143053869	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB2	9846	broad.mit.edu	37	11	77930530	77930530	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB2	9846	broad.mit.edu	37	11	77930530	77930530	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26793342	26793342	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB3	2562	broad.mit.edu	37	15	26793342	26793342	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49230970	49230970	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAGE12J	729396	broad.mit.edu	37	X	49230970	49230970	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242742902	242742902	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAL3ST2	64090	broad.mit.edu	37	2	242742902	242742902	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALP	85569	broad.mit.edu	37	19	56688495	56688495	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALP	85569	broad.mit.edu	37	19	56688495	56688495	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179734220	179734220	+	Missense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT2	9945	broad.mit.edu	37	5	179734220	179734220	+	Missense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA8E	390535	broad.mit.edu	37	15	23445513	23445513	+	3'UTR	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89948210	89948210	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	89948210	89948210	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11750922	11750922	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11750922	11750922	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146480781	146480781	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144899585	144899585	+	Missense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144899585	144899585	+	Missense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106698601	106698601	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106698601	106698601	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45695955	45695955	+	Missense_Mutation	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45695955	45695955	+	Missense_Mutation	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58127025	58127025	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR6	63897	broad.mit.edu	37	17	58127025	58127025	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65475972	65475972	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65475972	65475972	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118451919	118451919	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118451919	118451919	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113850097	113850097	+	Intron	SNP	G	T	T	rs115102727	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113850097	113850097	+	Intron	SNP	G	T	T	rs115102727	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18174823	18174823	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22RA1	58985	broad.mit.edu	37	1	24447964	24447964	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL22RA1	58985	broad.mit.edu	37	1	24447964	24447964	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6061965	6061965	+	Intron	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RA	3559	broad.mit.edu	37	10	6061965	6061965	+	Intron	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4	3565	broad.mit.edu	37	5	132015185	132015185	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4	3565	broad.mit.edu	37	5	132015185	132015185	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP1	3628	broad.mit.edu	37	2	191235886	191235886	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP1	3628	broad.mit.edu	37	2	191235886	191235886	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237317257	237317257	+	Intron	SNP	C	T	T	rs75931791	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121547297	121547297	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCB1	9657	broad.mit.edu	37	3	121547297	121547297	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227663232	227663232	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS1	3667	broad.mit.edu	37	2	227663232	227663232	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15689005	15689005	+	Silent	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15689005	15689005	+	Silent	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156645054	156645054	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156645054	156645054	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26628358	26628358	+	Intron	DEL	A	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26628358	26628358	+	Intron	DEL	A	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24533250	24533250	+	Splice_Site	SNP	C	T	T	rs75937204		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN2	50618	broad.mit.edu	37	2	24533250	24533250	+	Splice_Site	SNP	C	T	T	rs75937204		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033077	30033077	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033077	30033077	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197444857	197444857	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197444857	197444857	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0831	22863	broad.mit.edu	37	14	55862765	55862765	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0831	22863	broad.mit.edu	37	14	55862765	55862765	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154505955	154505955	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0922	23240	broad.mit.edu	37	4	154505955	154505955	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF9	64147	broad.mit.edu	37	3	47289496	47289496	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55331433	55331433	+	Silent	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55331433	55331433	+	Silent	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70371027	70371027	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70371027	70371027	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123067518	123067518	+	Silent	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123067518	123067518	+	Silent	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53169462	53169462	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT76	51350	broad.mit.edu	37	12	53169462	53169462	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52627141	52627141	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT7	3855	broad.mit.edu	37	12	52627141	52627141	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-5	83895	broad.mit.edu	37	17	39183145	39183145	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133954714	133954714	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133954714	133954714	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203739874	203739874	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203739874	203739874	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88441312	88441312	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB3	11155	broad.mit.edu	37	10	88441312	88441312	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66102281	66102281	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66102281	66102281	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27390166	27390166	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27390166	27390166	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPF	8513	broad.mit.edu	37	10	90436047	90436047	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPF	8513	broad.mit.edu	37	10	90436047	90436047	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148252093	148252093	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC200030	200030	broad.mit.edu	37	1	148252093	148252093	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132201555	132201555	+	Silent	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132201555	132201555	+	Silent	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC642846	642846	broad.mit.edu	37	12	9465224	9465224	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21936918	21936918	+	RNA	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LONP1	9361	broad.mit.edu	37	19	5720022	5720022	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56320531	56320531	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56320531	56320531	+	Intron	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141128895	141128895	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170030461	170030461	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170030461	170030461	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861875	52861875	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861875	52861875	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8E	80131	broad.mit.edu	37	19	7964661	7964661	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8E	80131	broad.mit.edu	37	19	7964661	7964661	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101567857	101567857	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101567857	101567857	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160636419	160636419	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160636571	160636571	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160637477	160637477	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160636419	160636419	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160636571	160636571	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY75	4065	broad.mit.edu	37	2	160637477	160637477	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1818265	1818265	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1818265	1818265	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217142512	217142512	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217142512	217142512	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498361	66498361	+	RNA	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCART3P	442229	broad.mit.edu	37	6	66498361	66498361	+	RNA	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112824025	112824030	+	In_Frame_Del	DEL	GCTGCT	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112824025	112824030	+	In_Frame_Del	DEL	GCTGCT	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100395747	100395747	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCHR2	84539	broad.mit.edu	37	6	100395747	100395747	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207605623	207605623	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207605623	207605623	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3294567	3294567	+	Silent	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141734499	141734499	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755586	141755586	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141734499	141734499	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755586	141755586	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151902405	151902405	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151902405	151902405	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT3	4300	broad.mit.edu	37	9	20414343	20414343	+	Silent	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL33	9553	broad.mit.edu	37	2	28002155	28002155	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41332897	41332897	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR14	64419	broad.mit.edu	37	3	9726654	9726654	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048804	9048804	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048804	9048804	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1019507	1019507	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC6	4588	broad.mit.edu	37	11	1019507	1019507	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113547343	113547343	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113547343	113547343	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8587234	8587234	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1F	4542	broad.mit.edu	37	19	8587234	8587234	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128394514	128394514	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128394514	128394514	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3142040	3142040	+	Missense_Mutation	SNP	G	T	T	rs138431527	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM1	8736	broad.mit.edu	37	18	3142040	3142040	+	Missense_Mutation	SNP	G	T	T	rs138431527	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41894957	41894957	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41894957	41894957	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89891357	89891357	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89891357	89891357	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71169641	71169641	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71169641	71169641	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204030957	204030957	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL1	65065	broad.mit.edu	37	2	204030957	204030957	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	146397242	146397242	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16907299	16907299	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23932094	23932094	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23932094	23932094	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70526003	70526003	+	Intron	SNP	C	A	A	rs138293582	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70526003	70526003	+	Intron	SNP	C	A	A	rs138293582	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50765750	50765750	+	3'UTR	SNP	G	A	A	rs5743296		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50765750	50765750	+	3'UTR	SNP	G	A	A	rs5743296		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66188928	66188928	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66189682	66189682	+	Silent	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66189745	66189745	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66191054	66191054	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66192248	66192248	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66188928	66188928	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66189682	66189682	+	Silent	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66189745	66189745	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66191054	66191054	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66192248	66192248	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45668307	45668307	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84738738	84738738	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84738738	84738738	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79433607	79433607	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79433607	79433607	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28141319	28141319	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM1	10439	broad.mit.edu	37	9	137967664	137967664	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53617300	53617300	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53617300	53617300	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158576834	158576834	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10Z1	128368	broad.mit.edu	37	1	158576834	158576834	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4L1	122742	broad.mit.edu	37	14	20529107	20529107	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4L1	122742	broad.mit.edu	37	14	20529107	20529107	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369133	22369133	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413891	22413891	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20216063	20216063	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20216063	20216063	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51T1	401665	broad.mit.edu	37	11	4903460	4903460	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51T1	401665	broad.mit.edu	37	11	4903460	4903460	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344632	56344632	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M10	390167	broad.mit.edu	37	11	56344632	56344632	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC5L	5001	broad.mit.edu	37	7	103801549	103801549	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4190721	4190721	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOP1	133060	broad.mit.edu	37	4	4190721	4190721	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25075700	25075700	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP4	143	broad.mit.edu	37	13	25075700	25075700	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31824237	31824237	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31824237	31824237	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133833	91133833	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91133833	91133833	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE	5118	broad.mit.edu	37	7	100201147	100201147	+	Missense_Mutation	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE	5118	broad.mit.edu	37	7	100201147	100201147	+	Missense_Mutation	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDAP1	11333	broad.mit.edu	37	7	98994233	98994233	+	3'UTR	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDAP1	11333	broad.mit.edu	37	7	98994233	98994233	+	3'UTR	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4C	5143	broad.mit.edu	37	19	18329147	18329147	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4C	5143	broad.mit.edu	37	19	18329147	18329147	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF19	26147	broad.mit.edu	37	9	123626344	123626344	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF19	26147	broad.mit.edu	37	9	123632765	123632765	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF19	26147	broad.mit.edu	37	9	123626344	123626344	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133817000	133817000	+	Intron	DEL	T	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207108749	207108749	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17124380	17124380	+	Splice_Site	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2A	5286	broad.mit.edu	37	11	17124380	17124380	+	Splice_Site	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18544292	18544292	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C2G	5288	broad.mit.edu	37	12	18544292	18544292	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITX1	5307	broad.mit.edu	37	5	134364901	134364901	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITX1	5307	broad.mit.edu	37	5	134364901	134364901	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25158424	25158424	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL3	440822	broad.mit.edu	37	22	25158424	25158424	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51732854	51732854	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51732854	51732854	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	96064080	96064080	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEK	5341	broad.mit.edu	37	2	68609628	68609629	+	Intron	INS	-	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118187666	118187666	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118231353	118231353	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118187666	118187666	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118231353	118231353	+	Silent	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7607476	7607476	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7607476	7607476	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42226873	42226873	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLB	5423	broad.mit.edu	37	8	42226873	42226873	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2K	5440	broad.mit.edu	37	8	101163567	101163567	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR2K	5440	broad.mit.edu	37	8	101163567	101163567	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23831055	23831055	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARGC1A	10891	broad.mit.edu	37	4	23831055	23831055	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CA	5530	broad.mit.edu	37	4	101947155	101947155	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430783	43430783	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG7	5676	broad.mit.edu	37	19	43430783	43430783	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN6	5777	broad.mit.edu	37	12	7066919	7066919	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN6	5777	broad.mit.edu	37	12	7066919	7066919	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8248184	8248184	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	8248184	8248184	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM2	23369	broad.mit.edu	37	2	20478332	20478332	+	Intron	DEL	T	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21590695	21590695	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135894335	135894335	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP1	22930	broad.mit.edu	37	2	135894337	135894337	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAN	5901	broad.mit.edu	37	12	131359372	131359373	+	Intron	INS	-	T	T	rs147801513	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384588	79384588	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79384588	79384588	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100079155	100079155	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV1	51455	broad.mit.edu	37	2	100079155	100079155	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3319836	3319836	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3319836	3319836	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74150240	74150240	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74150240	74150240	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94537938	94537938	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94537938	94537938	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPAP1	26015	broad.mit.edu	37	15	41823208	41823208	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	1994859	1994859	+	Silent	SNP	C	T	T	rs140950130		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL3L	6123	broad.mit.edu	37	16	1994859	1994859	+	Silent	SNP	C	T	T	rs140950130		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78811791	78811791	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTOR	57521	broad.mit.edu	37	17	78811791	78811791	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM1	6240	broad.mit.edu	37	11	4148251	4148251	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRM1	6240	broad.mit.edu	37	11	4148251	4148251	+	Intron	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108970255	108970255	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO2	340419	broad.mit.edu	37	8	108970255	108970255	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179020526	179020526	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUFY1	80230	broad.mit.edu	37	5	179020526	179020526	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP1	59350	broad.mit.edu	37	4	159538326	159538326	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51171060	51171060	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL1	6299	broad.mit.edu	37	16	51171060	51171060	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15918655	15918655	+	5'UTR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMSN1	64092	broad.mit.edu	37	21	15918655	15918655	+	5'UTR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4269770	4269770	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74704231	74704231	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74704231	74704231	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735446	164735446	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735446	164735446	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKI	6497	broad.mit.edu	37	1	2234506	2234506	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKI	6497	broad.mit.edu	37	1	2234506	2234506	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22364898	22364898	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19677462	19677462	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19677462	19677462	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A19	60386	broad.mit.edu	37	17	73269841	73269842	+	Intron	INS	-	TTATT	TTATT	rs150528573	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A24	29957	broad.mit.edu	37	1	108700189	108700189	+	Silent	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A24	29957	broad.mit.edu	37	1	108700189	108700189	+	Silent	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75677082	75677082	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75677082	75677082	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21471663	21471663	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21471663	21471663	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98799806	98799806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98799806	98799806	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20568974	20568974	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20568974	20568974	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD6	4091	broad.mit.edu	37	15	67008701	67008701	+	Intron	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMAD6	4091	broad.mit.edu	37	15	67008701	67008701	+	Intron	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97081774	97081774	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97081774	97081774	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186570601	186570601	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS2	8470	broad.mit.edu	37	4	186570601	186570601	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23728512	23728512	+	Intron	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX9	6662	broad.mit.edu	37	17	70117755	70117755	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX9	6662	broad.mit.edu	37	17	70117755	70117755	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPCS3	60559	broad.mit.edu	37	4	177241123	177241124	+	5'UTR	DNP	GG	AA	AA			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPCS3	60559	broad.mit.edu	37	4	177241123	177241124	+	5'UTR	DNP	GG	AA	AA			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136221648	136221648	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG1	10274	broad.mit.edu	37	3	136221648	136221648	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134939900	134939900	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134939900	134939900	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79693431	79693431	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT1	6857	broad.mit.edu	37	12	79693431	79693431	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32635526	32635526	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32635526	32635526	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797214	32797214	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797214	32797214	+	Missense_Mutation	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARSL2	123283	broad.mit.edu	37	15	102264628	102264628	+	5'UTR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R7	50837	broad.mit.edu	37	12	10954186	10954186	+	3'UTR	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R7	50837	broad.mit.edu	37	12	10954186	10954186	+	3'UTR	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	CAG	CAG	rs72320253		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170871013	170871014	+	In_Frame_Ins	INS	-	CAG	CAG	rs72320253		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121989629	121989629	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2L1	29842	broad.mit.edu	37	2	121989629	121989629	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133935512	133935512	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP4	51078	broad.mit.edu	37	2	242572493	242572493	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THAP4	51078	broad.mit.edu	37	2	242572493	242572493	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71457586	71457586	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD4	79875	broad.mit.edu	37	15	71457586	71457586	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30053374	30053374	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30053374	30053374	+	Silent	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35699902	35699902	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35699902	35699902	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30729763	30729763	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF4	9777	broad.mit.edu	37	20	30729763	30729763	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226037573	226037573	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226037573	226037573	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68788685	68788685	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS2	7113	broad.mit.edu	37	21	42839625	42839625	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS2	7113	broad.mit.edu	37	21	42839625	42839625	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12186060	12186060	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF8	943	broad.mit.edu	37	1	12186060	12186060	+	Silent	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR3A	64222	broad.mit.edu	37	1	179064160	179064160	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR3A	64222	broad.mit.edu	37	1	179064160	179064160	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7579580	7579580	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909557	10909557	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10909557	10909557	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202277707	202277707	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAK2	66008	broad.mit.edu	37	2	202277707	202277707	+	Intron	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108565883	108565883	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAT1	50852	broad.mit.edu	37	3	108565883	108565883	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14398885	14398885	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIO	7204	broad.mit.edu	37	5	14398885	14398885	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72958705	72958705	+	Intron	DEL	G	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167754296	167754296	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167754296	167754296	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179449635	179449635	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179449635	179449635	+	Missense_Mutation	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166580205	166580205	+	Missense_Mutation	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA1	7317	broad.mit.edu	37	X	47062565	47062565	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA1	7317	broad.mit.edu	37	X	47062565	47062565	+	Silent	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170806648	170806648	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170933891	170933891	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170806648	170806648	+	Intron	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170851091	170851091	+	Intron	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR3	130507	broad.mit.edu	37	2	170933891	170933891	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17729678	17729678	+	Intron	SNP	G	A	A	rs56145097		TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54825227	54825227	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126219701	126219701	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126219701	126219701	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144808667	144808667	+	Intron	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22514835	22514835	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4351259	4351259	+	IGR	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070303	55070303	+	IGR	DEL	C	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38600076	38600076	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	51151118	51151118	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65533198	65533198	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21579283	21579283	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20457465	20457466	+	IGR	DNP	GG	TT	TT			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140249	21140249	+	IGR	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31114734	31114734	+	IGR	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31192386	31192386	+	IGR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95398750	95398750	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030399	52030399	+	IGR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68893595	68893595	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434510	106434510	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17015418	17015418	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11601803	11601803	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885091	10885091	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383801	132383801	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136958096	136958096	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065321	34065321	+	IGR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	132120299	132120299	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	74186055	74186055	+	IGR	SNP	C	A	A	rs144078467	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90251431	90251431	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297077	65297077	+	IGR	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69895882	69895882	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180551383	180551383	+	IGR	SNP	G	T	T	rs145285637	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854186	132854186	+	IGR	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57484821	57484821	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	63056051	63056051	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22514835	22514835	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55070303	55070303	+	IGR	DEL	C	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38600076	38600076	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65533198	65533198	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21579283	21579283	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20457465	20457466	+	IGR	DNP	GG	TT	TT			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21140249	21140249	+	IGR	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31114734	31114734	+	IGR	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31192386	31192386	+	IGR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	95398750	95398750	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52030399	52030399	+	IGR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68893595	68893595	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43719441	43719441	+	IGR	SNP	G	C	C	rs143065654	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106434510	106434510	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17015418	17015418	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11601803	11601803	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10885091	10885091	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383801	132383801	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136958096	136958096	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065321	34065321	+	IGR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	132120299	132120299	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90251431	90251431	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65297077	65297077	+	IGR	SNP	T	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69895882	69895882	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180551383	180551383	+	IGR	SNP	G	T	T	rs145285637	by1000genomes	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57484821	57484821	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	63056051	63056051	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89394565	89394565	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863924	110863924	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150162029	150162029	+	IGR	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402387	37402387	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48140545	48140545	+	IGR	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52637733	52637733	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13241393	13241393	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110863924	110863924	+	IGR	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150162029	150162029	+	IGR	SNP	A	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402387	37402387	+	IGR	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48140545	48140545	+	IGR	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52637733	52637733	+	IGR	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13241393	13241393	+	IGR	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIM	7431	broad.mit.edu	37	10	17276623	17276623	+	Intron	DEL	T	-	-			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177077246	177077246	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177077246	177077246	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR43	23160	broad.mit.edu	37	2	29150465	29150465	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR43	23160	broad.mit.edu	37	2	29150465	29150465	+	Missense_Mutation	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36590345	36590345	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17232349	17232349	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17232349	17232349	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47597309	47597309	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47597309	47597309	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69256784	69256784	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP36L1	677	broad.mit.edu	37	14	69256784	69256784	+	Missense_Mutation	SNP	G	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114065	147114065	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114065	147114065	+	Missense_Mutation	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44803988	44803988	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44803988	44803988	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM5	9205	broad.mit.edu	37	13	20411849	20411849	+	Nonsense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM5	9205	broad.mit.edu	37	13	20411849	20411849	+	Nonsense_Mutation	SNP	T	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF193	7746	broad.mit.edu	37	6	28194989	28194989	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF193	7746	broad.mit.edu	37	6	28194989	28194989	+	Missense_Mutation	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64415024	64415024	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64415024	64415024	+	Intron	SNP	A	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	64984	64984	+	Intron	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF662	389114	broad.mit.edu	37	3	42956829	42956829	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF662	389114	broad.mit.edu	37	3	42956829	42956829	+	Missense_Mutation	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF765	91661	broad.mit.edu	37	19	53913178	53913178	+	3'UTR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF765	91661	broad.mit.edu	37	19	53913178	53913178	+	3'UTR	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88963423	88963423	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88963423	88963423	+	Missense_Mutation	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955906	113955906	+	Missense_Mutation	SNP	C	T	T	rs150485238	byFrequency	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF80	7634	broad.mit.edu	37	3	113955906	113955906	+	Missense_Mutation	SNP	C	T	T	rs150485238	byFrequency	TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51822395	51822395	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55063064	55063065	+	RNA	DNP	CC	AA	AA			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8051021	8051021	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102300198	102300198	+	5'Flank	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489448	20489448	+	RNA	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22466414	22466414	+	5'Flank	SNP	C	G	G			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25427429	25427429	+	RNA	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76075401	76075401	+	3'UTR	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17385500	17385500	+	5'Flank	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89399370	89399370	+	RNA	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142020965	142020965	+	Intron	SNP	G	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	51822395	51822395	+	Intron	SNP	C	A	A			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55063064	55063065	+	RNA	DNP	CC	AA	AA			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	8051021	8051021	+	Intron	SNP	C	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25427429	25427429	+	RNA	SNP	G	T	T			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76075401	76075401	+	3'UTR	SNP	A	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89399370	89399370	+	RNA	SNP	T	C	C			TCGA-44-5643-01A-01D-1625-08	TCGA-44-5643-11A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
