Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
AADACL3	126767	broad.mit.edu	37	1	12785651	12785651	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDHPPT	60496	broad.mit.edu	37	11	105948550	105948550	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA10	10349	broad.mit.edu	37	17	67197798	67197798	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215821468	215821468	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215891755	215891755	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107568729	107568729	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139903447	139903447	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139909475	139909475	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67297231	67297231	+	Intron	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67305562	67305562	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66991914	66991914	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169780348	169780348	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB11	8647	broad.mit.edu	37	2	169830280	169830280	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87179479	87179479	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87046795	87046795	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB5	340273	broad.mit.edu	37	7	20739388	20739388	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48741471	48741471	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC3	8714	broad.mit.edu	37	17	48753229	48753229	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183643309	183643309	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17483331	17483331	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22063216	22063216	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74757123	74757123	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74762462	74762462	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF2	10061	broad.mit.edu	37	7	150915804	150915804	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179077914	179077914	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35470206	35470206	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35608975	35608975	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACACA	31	broad.mit.edu	37	17	35640137	35640137	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAN	176	broad.mit.edu	37	15	89385009	89385009	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP3	116983	broad.mit.edu	37	1	1231130	1231130	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN3	9311	broad.mit.edu	37	7	150745902	150745902	+	5'UTR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOXL	55289	broad.mit.edu	37	2	111850588	111850588	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM2A	123876	broad.mit.edu	37	16	20488865	20488865	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74146569	74146569	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69346715	69346715	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR3B	57180	broad.mit.edu	37	7	152551607	152551607	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123334018	123334018	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127798492	127798492	+	Intron	SNP	T	C	C	rs138856040	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207407978	207407978	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106354507	106354507	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24359041	24359041	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33561167	33561167	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576822	33576822	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33881488	33881488	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239460	5239460	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178548492	178548492	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS8	11095	broad.mit.edu	37	11	130288909	130288909	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18681948	18681948	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45743081	45743081	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7724707	7724707	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY6	112	broad.mit.edu	37	12	49166402	49166402	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131861864	131861865	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1	116	broad.mit.edu	37	18	905418	905418	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD3	120	broad.mit.edu	37	10	111878420	111878420	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADRBK2	157	broad.mit.edu	37	22	26099623	26099623	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF3	3899	broad.mit.edu	37	2	100210271	100210271	+	Missense_Mutation	SNP	C	A	A	rs144010569		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP3	116988	broad.mit.edu	37	7	150815863	150815864	+	Intron	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP7	653268	broad.mit.edu	37	10	51472576	51472576	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL2	79841	broad.mit.edu	37	11	47712125	47712125	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGBL4	84871	broad.mit.edu	37	1	50311826	50311826	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGRN	375790	broad.mit.edu	37	1	970664	970664	+	Silent	SNP	C	A	A	rs148157593		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459409	148459409	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT2L2	85007	broad.mit.edu	37	5	177636207	177636207	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247067394	247067394	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP12	9590	broad.mit.edu	37	6	151626887	151626887	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86265156	86265156	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B10	57016	broad.mit.edu	37	7	134215537	134215537	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1B15	441282	broad.mit.edu	37	7	134252803	134252803	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1CL1	340811	broad.mit.edu	37	10	5203624	5203624	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKT2	208	broad.mit.edu	37	19	40739743	40739743	+	3'UTR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45891207	45891207	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45938968	45938968	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPPL2	251	broad.mit.edu	37	2	233272331	233272331	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALS2	57679	broad.mit.edu	37	2	202580654	202580655	+	Intron	INS	-	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBN	258	broad.mit.edu	37	4	71465316	71465316	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38500825	38500825	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14797239	14797239	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241447120	241447120	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89346599	89346599	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD11	29123	broad.mit.edu	37	16	89351264	89351264	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD13C	81573	broad.mit.edu	37	1	70820143	70820143	+	5'UTR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD23	200539	broad.mit.edu	37	2	97505936	97505936	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27355482	27355482	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52282935	52282935	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKS1B	56899	broad.mit.edu	37	12	99640284	99640284	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101504243	101504243	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32E	81611	broad.mit.edu	37	1	150204268	150204268	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90341012	90341012	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA11	311	broad.mit.edu	37	10	81928909	81928909	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA13	312	broad.mit.edu	37	8	124715076	124715076	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA8L2	244	broad.mit.edu	37	10	47747050	47747050	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36579924	36579924	+	Splice_Site	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOX1	316	broad.mit.edu	37	2	201477456	201477456	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B2	8120	broad.mit.edu	37	15	83360726	83360726	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S2	10239	broad.mit.edu	37	15	90451662	90451662	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP1	333	broad.mit.edu	37	19	36369707	36369707	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB48R	55911	broad.mit.edu	37	16	28508881	28508881	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3B	9582	broad.mit.edu	37	22	39382006	39382006	+	Missense_Mutation	SNP	C	A	A	rs144579352		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21250752	21250752	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC3	345	broad.mit.edu	37	11	116701407	116701407	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP8	343	broad.mit.edu	37	16	25228443	25228443	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72397194	72397194	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP2	84364	broad.mit.edu	37	11	47187910	47187910	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARGFX	503582	broad.mit.edu	37	3	121304838	121304838	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP1	392	broad.mit.edu	37	11	46703732	46703732	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP29	9411	broad.mit.edu	37	1	94667361	94667361	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119133227	119133227	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156914693	156914693	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF6	9459	broad.mit.edu	37	X	135770132	135770132	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID1B	57492	broad.mit.edu	37	6	157529010	157529010	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3B	10620	broad.mit.edu	37	15	74882171	74882171	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID3C	138715	broad.mit.edu	37	9	34621535	34621535	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC2	27106	broad.mit.edu	37	19	18120710	18120710	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASAP2	8853	broad.mit.edu	37	2	9437401	9437401	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASH1L	55870	broad.mit.edu	37	1	155448134	155448134	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNS	440	broad.mit.edu	37	7	97493846	97493846	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176915100	176915100	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119942971	119942971	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL2	55252	broad.mit.edu	37	2	26079285	26079285	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124381335	124381335	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD5	79915	broad.mit.edu	37	17	29171765	29171766	+	Intron	INS	-	AAAAA	AAAAA	rs66504576		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161761755	161761755	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161761759	161761759	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG3	64422	broad.mit.edu	37	3	112277264	112277264	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATM	472	broad.mit.edu	37	11	108142174	108142174	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11C	286410	broad.mit.edu	37	X	138823100	138823100	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25268491	25268491	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193156355	193156355	+	Missense_Mutation	SNP	C	T	T	rs143538005		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A4	84239	broad.mit.edu	37	3	193201780	193201780	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160109659	160109659	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B4	23439	broad.mit.edu	37	X	119509178	119509178	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B4	493	broad.mit.edu	37	1	203652495	203652495	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP4A	495	broad.mit.edu	37	19	36046180	36046180	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	77108075	77108075	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPBD4	89978	broad.mit.edu	37	15	35742776	35742776	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117026331	117026331	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATXN10	25814	broad.mit.edu	37	22	46114409	46114409	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1B	553	broad.mit.edu	37	1	206224616	206224616	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALNT1	8706	broad.mit.edu	37	3	160804096	160804096	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BACE2	25825	broad.mit.edu	37	21	42598273	42598273	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70064141	70064141	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BANK1	55024	broad.mit.edu	37	4	102946245	102946245	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ1B	9031	broad.mit.edu	37	7	72884773	72884773	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160285637	160285637	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAZ2B	29994	broad.mit.edu	37	2	160303412	160303412	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52612525	52612525	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2L13	23786	broad.mit.edu	37	22	18187564	18187564	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL7A	605	broad.mit.edu	37	12	122492852	122492852	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCORL1	63035	broad.mit.edu	37	X	129150034	129150034	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDKRB1	623	broad.mit.edu	37	14	96730746	96730746	+	Missense_Mutation	SNP	C	A	A	rs113666900	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST3	144453	broad.mit.edu	37	12	70049038	70049038	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEYLA	497634	broad.mit.edu	37	8	47751978	47751978	+	5'Flank	SNP	C	A	A	rs36108918		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFAR	51283	broad.mit.edu	37	16	14743569	14743569	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICC1	80114	broad.mit.edu	37	10	60549635	60549635	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLVRA	644	broad.mit.edu	37	7	43843411	43843411	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP2	650	broad.mit.edu	37	20	6759010	6759010	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP5	653	broad.mit.edu	37	6	55638989	55638989	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR1A	657	broad.mit.edu	37	10	88651855	88651855	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43297597	43297597	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92442959	92442959	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTBD3	22903	broad.mit.edu	37	20	11903589	11903589	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A3	10384	broad.mit.edu	37	6	26446234	26446234	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL8	79908	broad.mit.edu	37	5	180374389	180374389	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BUD13	84811	broad.mit.edu	37	11	116633961	116633961	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf113	387638	broad.mit.edu	37	10	21415032	21415032	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf137	26098	broad.mit.edu	37	10	127442261	127442261	+	Splice_Site	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105902162	105902162	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf79	80217	broad.mit.edu	37	10	105939596	105939596	+	Splice_Site	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf84	63877	broad.mit.edu	37	10	120070916	120070916	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf2	738	broad.mit.edu	37	11	64877944	64877944	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf41	25758	broad.mit.edu	37	11	33566428	33566428	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf66	220004	broad.mit.edu	37	11	61254429	61254429	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97150345	97150345	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf27	93081	broad.mit.edu	37	13	103419696	103419696	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf33	84935	broad.mit.edu	37	13	31498393	31498394	+	Intron	INS	-	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf102	55051	broad.mit.edu	37	14	90782803	90782803	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81329195	81329195	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95932328	95932328	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf33	196951	broad.mit.edu	37	15	49833939	49833939	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf78	123970	broad.mit.edu	37	16	49411618	49411618	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf91	283951	broad.mit.edu	37	16	1476238	1476239	+	Frame_Shift_Ins	INS	-	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf104	284071	broad.mit.edu	37	17	42745463	42745463	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf45	85019	broad.mit.edu	37	18	20932309	20932309	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51770795	51770795	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf101	257044	broad.mit.edu	37	1	244769071	244769071	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf107	27042	broad.mit.edu	37	1	210016917	210016917	+	Nonsense_Mutation	SNP	G	T	T	rs142546646	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf177	163747	broad.mit.edu	37	1	55277463	55277463	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf27	54953	broad.mit.edu	37	1	186375307	186375307	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf43	51507	broad.mit.edu	37	20	55049657	55049657	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf54	113278	broad.mit.edu	37	20	745853	745853	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf70	140683	broad.mit.edu	37	20	31757084	31757084	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf94	128710	broad.mit.edu	37	20	10594215	10594215	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	46000518	46000518	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C22orf42	150297	broad.mit.edu	37	22	32545832	32545832	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf18	54978	broad.mit.edu	37	2	26998206	26998206	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf39	92749	broad.mit.edu	37	2	26654589	26654589	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf44	80304	broad.mit.edu	37	2	24261839	24261839	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPB	725	broad.mit.edu	37	1	207271573	207271573	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71024466	71024467	+	Missense_Mutation	DNP	CT	TG	TG			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf22	55322	broad.mit.edu	37	5	31538638	31538638	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf42	65250	broad.mit.edu	37	5	37121711	37121711	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf167	253714	broad.mit.edu	37	6	97616111	97616111	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf204	387119	broad.mit.edu	37	6	118953648	118953648	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf70	55780	broad.mit.edu	37	6	170179308	170179308	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28B	221960	broad.mit.edu	37	7	6865848	6865848	+	5'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf57	136288	broad.mit.edu	37	7	48080877	48080877	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906225	120906225	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906781	120906781	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39289127	39289127	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf102	375748	broad.mit.edu	37	9	98680526	98680526	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf114	51490	broad.mit.edu	37	9	131590995	131590995	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA9	768	broad.mit.edu	37	9	35674511	35674511	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABP5	56344	broad.mit.edu	37	19	48542605	48542605	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13341145	13341145	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	141010017	141010017	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181701927	181701927	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181714438	181714438	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181727923	181727923	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1F	778	broad.mit.edu	37	X	49083471	49083471	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1H	8912	broad.mit.edu	37	16	1254481	1254481	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201035348	201035348	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201035350	201035350	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81693659	81693659	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81714110	81714110	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54921936	54921936	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB1	782	broad.mit.edu	37	17	37341033	37341033	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18828318	18828318	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85985158	85985158	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	86028223	86028223	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159163608	159163608	+	Intron	SNP	T	A	A	rs3026989	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS	8618	broad.mit.edu	37	3	62423881	62423881	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAD	790	broad.mit.edu	37	2	27446666	27446666	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134618226	134618226	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALN1	83698	broad.mit.edu	37	7	71571253	71571253	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN10	11132	broad.mit.edu	37	2	241537349	241537349	+	Silent	SNP	G	T	T	rs139512421	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD8	22900	broad.mit.edu	37	19	48733683	48733683	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40916208	40916208	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP9	842	broad.mit.edu	37	1	15819544	15819544	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116243727	116243727	+	3'UTR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55020975	55020975	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASZ1	54897	broad.mit.edu	37	1	10702940	10702940	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38849274	38849274	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLB	868	broad.mit.edu	37	3	105400710	105400710	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX4	8535	broad.mit.edu	37	17	77807724	77807724	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX6	23466	broad.mit.edu	37	22	39262858	39262858	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCAR1	55749	broad.mit.edu	37	10	70515061	70515061	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCAR1	55749	broad.mit.edu	37	10	70516155	70516155	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31683082	31683082	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128454755	128454755	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179736065	179736065	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106118130	106118130	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC150	284992	broad.mit.edu	37	2	197539093	197539093	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180378429	180378429	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC52	152185	broad.mit.edu	37	3	113172643	113172643	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC62	84660	broad.mit.edu	37	12	123265708	123265708	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC74A	90557	broad.mit.edu	37	2	132287351	132287351	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC81	60494	broad.mit.edu	37	11	86126096	86126096	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC83	220047	broad.mit.edu	37	11	85630436	85630436	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCHCR1	54535	broad.mit.edu	37	6	31118860	31118860	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKAR	886	broad.mit.edu	37	4	26483223	26483223	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNB3	85417	broad.mit.edu	37	X	50052996	50052996	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCPG1	9236	broad.mit.edu	37	15	55669161	55669161	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163L1	283316	broad.mit.edu	37	12	7522232	7522232	+	Nonsense_Mutation	SNP	C	A	A	rs138733121	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1C	911	broad.mit.edu	37	1	158261821	158261821	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325127	158325127	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD226	10666	broad.mit.edu	37	18	67540474	67540474	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD244	51744	broad.mit.edu	37	1	160808220	160808220	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51728623	51728623	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD33	945	broad.mit.edu	37	19	51729552	51729552	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD72	971	broad.mit.edu	37	9	35610826	35610826	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	149962106	149962106	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC6	990	broad.mit.edu	37	17	38450769	38450769	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA2	157313	broad.mit.edu	37	8	25337527	25337527	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7	83879	broad.mit.edu	37	2	174231037	174231037	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24511461	24511462	+	Frame_Shift_Del	DEL	TG	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24593655	24593655	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	64981653	64981653	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65016163	65016163	+	Silent	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21882819	21882819	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21884073	21884073	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95185948	95185948	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19520746	19520746	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19839061	19839061	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	60499411	60499411	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26890652	26890652	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26906090	26906090	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85957609	85957609	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR1	92211	broad.mit.edu	37	10	85961591	85961591	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP1	51654	broad.mit.edu	37	20	31981731	31981731	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKL5	6792	broad.mit.edu	37	X	18606354	18606354	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKN1A	1026	broad.mit.edu	37	6	36653340	36653340	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125848198	125848198	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125875589	125875589	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDON	50937	broad.mit.edu	37	11	125893185	125893185	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDR1	1038	broad.mit.edu	37	X	139865924	139865924	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPE	1062	broad.mit.edu	37	4	104081905	104081905	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56874615	56874615	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP152	22995	broad.mit.edu	37	15	49031278	49031278	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117242006	117242006	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP72	55722	broad.mit.edu	37	5	637597	637597	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES7	221223	broad.mit.edu	37	16	55883456	55883456	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50828525	50828525	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6169754	6169754	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133428174	133428174	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHM	1121	broad.mit.edu	37	X	85149332	85149332	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175673684	175673684	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM2	1129	broad.mit.edu	37	7	136623181	136623181	+	Intron	SNP	T	G	G	rs141184073	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34356288	34356288	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46772989	46772989	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184072522	184072522	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN2	1181	broad.mit.edu	37	3	184075729	184075729	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1A	51267	broad.mit.edu	37	12	10223795	10223795	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC9A	283420	broad.mit.edu	37	12	10217378	10217378	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23625624	23625624	+	Translation_Start_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLN8	2055	broad.mit.edu	37	8	1728673	1728673	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140122600	140122600	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN2	64084	broad.mit.edu	37	3	140251183	140251183	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUL1	27098	broad.mit.edu	37	18	633349	633349	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLYBL	171425	broad.mit.edu	37	13	100511107	100511110	+	Intron	DEL	ACTT	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	87951878	87951879	+	Frame_Shift_Ins	INS	-	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA4	1262	broad.mit.edu	37	11	6261279	6261279	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87672126	87672126	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21508641	21508641	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT7	29883	broad.mit.edu	37	8	17102606	17102606	+	Missense_Mutation	SNP	T	A	A	rs142912321		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNPY2	10330	broad.mit.edu	37	12	56709035	56709035	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41323864	41323864	+	Intron	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74548836	74548836	+	Silent	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3080535	3080535	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100095501	100095501	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125281818	125281818	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTROB	116840	broad.mit.edu	37	17	7838529	7838529	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103352612	103352613	+	Splice_Site	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33148722	33148722	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121239648	121239648	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121290841	121290841	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101759217	101759217	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL18A1	80781	broad.mit.edu	37	21	46900494	46900494	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70850659	70850659	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70850813	70850813	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70859612	70859612	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56033064	56033064	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL24A1	255631	broad.mit.edu	37	1	86590639	86590639	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109817893	109817893	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109862482	109862482	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL27A1	85301	broad.mit.edu	37	9	117064009	117064009	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110823055	110823055	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227872712	227872712	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	228012221	228012221	+	5'UTR	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A2	1292	broad.mit.edu	37	21	47548967	47548967	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130284021	130284021	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70963105	70963105	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70976489	70976489	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	71009823	71009823	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A2	1298	broad.mit.edu	37	1	40777505	40777505	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COLEC11	78989	broad.mit.edu	37	2	3685139	3685139	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130297028	130297029	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPS8	10920	broad.mit.edu	37	2	238004453	238004453	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4408220	4408220	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX8C	341947	broad.mit.edu	37	14	93813555	93813558	+	5'UTR	DEL	GTTA	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148601653	148601653	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131963141	131963141	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2776473	2776473	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM1	56265	broad.mit.edu	37	20	2777180	2777180	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPXM2	119587	broad.mit.edu	37	10	125514291	125514291	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CP	1356	broad.mit.edu	37	3	148904392	148904392	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR2	1380	broad.mit.edu	37	1	207644887	207644887	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197396576	197396576	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRELD2	79174	broad.mit.edu	37	22	50320944	50320944	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CREM	1390	broad.mit.edu	37	10	35495959	35495959	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIM1	51232	broad.mit.edu	37	2	36703901	36703901	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49660567	49660567	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP2	7180	broad.mit.edu	37	6	49676981	49676981	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49696539	49696539	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSDE1	7812	broad.mit.edu	37	1	115260835	115260835	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37334173	37334173	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2830851	2830851	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113331138	113331138	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113519052	113519052	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113960090	113960090	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1E	1454	broad.mit.edu	37	22	38698909	38698909	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSRP2	1466	broad.mit.edu	37	12	77252846	77252846	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST4	1472	broad.mit.edu	37	20	23667826	23667826	+	Frame_Shift_Del	DEL	C	-	-	rs140501583		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80831304	80831304	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11199480	11199480	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS	1503	broad.mit.edu	37	1	41462928	41462928	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSB	1508	broad.mit.edu	37	8	11706573	11706573	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16893306	16893306	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	17032234	17032234	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43167711	43167711	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL9	23113	broad.mit.edu	37	6	43167829	43167829	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWF19L2	143884	broad.mit.edu	37	11	107299756	107299756	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49006003	49006003	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44866826	44866826	+	3'UTR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5RL	606495	broad.mit.edu	37	1	54661163	54661163	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143997189	143997189	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP26A1	1592	broad.mit.edu	37	10	94836214	94836214	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27C1	339761	broad.mit.edu	37	2	127961198	127961198	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C19	1557	broad.mit.edu	37	10	96609762	96609762	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2D7P1	1564	broad.mit.edu	37	22	42538086	42538086	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135347240	135347240	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42027479	42027479	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYSLTR1	10800	broad.mit.edu	37	X	77529230	77529230	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH2	9266	broad.mit.edu	37	19	48977256	48977256	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTH2	9266	broad.mit.edu	37	19	48982374	48982374	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYTSA	23384	broad.mit.edu	37	22	24761387	24761387	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242684449	242684449	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242695292	242695292	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57499077	57499077	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39381764	39381764	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72147052	72147052	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH1	1602	broad.mit.edu	37	13	72147232	72147232	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLA	747	broad.mit.edu	37	11	61490344	61490344	+	Silent	SNP	C	T	T	rs150315991		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAP3	7818	broad.mit.edu	37	1	155671644	155671644	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DARC	2532	broad.mit.edu	37	1	159175928	159175928	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAZL	1618	broad.mit.edu	37	3	16638884	16638884	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685141	125685141	+	Intron	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF12L1	139170	broad.mit.edu	37	X	125685965	125685965	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L1	285429	broad.mit.edu	37	4	41984848	41984848	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCST1	149095	broad.mit.edu	37	1	155011917	155011917	+	Missense_Mutation	SNP	C	A	A	rs148510175		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN4	51164	broad.mit.edu	37	5	150121493	150121493	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR2	4921	broad.mit.edu	37	1	162725147	162725148	+	Intron	DNP	GG	AT	AT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX10	1662	broad.mit.edu	37	11	108549087	108549087	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX41	51428	broad.mit.edu	37	5	176941686	176941686	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX60	55601	broad.mit.edu	37	4	169194354	169194354	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB113	245927	broad.mit.edu	37	6	49936521	49936521	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197480959	197480959	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND4B	9909	broad.mit.edu	37	1	153916599	153916599	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DET1	55070	broad.mit.edu	37	15	89056312	89056312	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR14	8220	broad.mit.edu	37	22	19127517	19127517	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKE	8526	broad.mit.edu	37	17	54912335	54912335	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX35	60625	broad.mit.edu	37	20	37632678	37632678	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISC1	27185	broad.mit.edu	37	1	231931037	231931037	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP1	9229	broad.mit.edu	37	18	3879413	3879413	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124377606	124377606	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32407590	32407590	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124359947	124359947	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21631062	21631062	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21781567	21781567	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52366232	52366232	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7662497	7662498	+	Intron	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13891031	13891031	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196866377	196866377	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72310524	72310524	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC13	23317	broad.mit.edu	37	3	132185919	132185919	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC18	202052	broad.mit.edu	37	5	138762004	138762004	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58178974	58178974	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6588995	6588995	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM3	26052	broad.mit.edu	37	1	171956843	171956843	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK3	1795	broad.mit.edu	37	3	51400009	51400009	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99459984	99459984	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY1	23033	broad.mit.edu	37	6	83829494	83829494	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPF1	8193	broad.mit.edu	37	19	38709569	38709569	+	Splice_Site	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116226355	116226355	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP6	1804	broad.mit.edu	37	7	154560998	154560998	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109028005	109028005	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109031580	109031580	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA5	340168	broad.mit.edu	37	6	74063140	74063140	+	Intron	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32928177	32928177	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL4	10570	broad.mit.edu	37	10	134010507	134010507	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100509722	100509722	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28719710	28719710	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC2	1824	broad.mit.edu	37	18	28650703	28650703	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28597987	28597987	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSG1	1828	broad.mit.edu	37	18	28923407	28923407	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56483445	56483445	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTX3	196403	broad.mit.edu	37	12	58000768	58000768	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP26	78986	broad.mit.edu	37	8	33451051	33451051	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DVL3	1857	broad.mit.edu	37	3	183888087	183888087	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102506696	102506696	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103194650	103194650	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1A	1859	broad.mit.edu	37	21	38858940	38858940	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYRK1B	9149	broad.mit.edu	37	19	40320990	40320990	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYSF	8291	broad.mit.edu	37	2	71817490	71817490	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108380824	108380824	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECEL1	9427	broad.mit.edu	37	2	233346689	233346690	+	Intron	DNP	GG	TA	TA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A2	1917	broad.mit.edu	37	20	62121997	62121997	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55240712	55240712	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGR2	1959	broad.mit.edu	37	10	64573365	64573365	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2AK2	5610	broad.mit.edu	37	2	37347280	37347280	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2C2	27161	broad.mit.edu	37	8	141549564	141549564	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3E	3646	broad.mit.edu	37	8	109260899	109260899	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3I	8668	broad.mit.edu	37	1	32690093	32690093	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3I	8668	broad.mit.edu	37	1	32694025	32694025	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73459480	73459480	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL4	6785	broad.mit.edu	37	6	80626291	80626291	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELOVL7	79993	broad.mit.edu	37	5	60063570	60063570	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79401979	79401979	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79474729	79474729	+	5'Flank	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27302068	27302069	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML1	2009	broad.mit.edu	37	14	100402669	100402669	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML4	27436	broad.mit.edu	37	2	42522255	42522255	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132168987	132168987	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132171081	132171081	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132466568	132466568	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132504520	132504520	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132514351	132514351	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131186823	131186823	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA10	284656	broad.mit.edu	37	1	38188793	38188793	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66217268	66217268	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134898724	134898724	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134920429	134920429	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPN1	29924	broad.mit.edu	37	19	56206162	56206162	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPRS	2058	broad.mit.edu	37	1	220145484	220145484	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51871621	51871621	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14013918	14013918	+	5'Flank	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216737570	216737570	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103495448	103495448	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESX1	80712	broad.mit.edu	37	X	103498885	103498885	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETS1	2113	broad.mit.edu	37	11	128426046	128426046	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5	7813	broad.mit.edu	37	1	93170110	93170110	+	Splice_Site	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVL	51466	broad.mit.edu	37	14	100582494	100582494	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA4	2070	broad.mit.edu	37	6	133783490	133783490	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH2	2146	broad.mit.edu	37	7	148524146	148524146	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EZH2	2146	broad.mit.edu	37	7	148543617	148543617	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197031844	197031844	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F5	2153	broad.mit.edu	37	1	169541586	169541586	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F7	2155	broad.mit.edu	37	13	113771983	113771983	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH	2166	broad.mit.edu	37	1	46874019	46874019	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A2	10827	broad.mit.edu	37	5	153414211	153414211	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153B	202134	broad.mit.edu	37	5	175533518	175533518	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM188B	84182	broad.mit.edu	37	7	30931616	30931616	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21A	387680	broad.mit.edu	37	10	51829550	51829550	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM26F	441168	broad.mit.edu	37	6	116779575	116779575	+	5'Flank	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3C	10447	broad.mit.edu	37	7	121004205	121004205	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM3C	10447	broad.mit.edu	37	7	121011399	121011399	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34150217	34150217	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55B	120406	broad.mit.edu	37	11	114569307	114569307	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM82B	51115	broad.mit.edu	37	8	87491270	87491270	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCG	2189	broad.mit.edu	37	9	35076143	35076143	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARP2	9855	broad.mit.edu	37	2	242422954	242422954	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150922767	150922767	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92086967	92086967	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531738	92531738	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48777563	48777563	+	Intron	SNP	C	A	A	rs140602		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48805630	48805630	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8174022	8174022	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO24	26261	broad.mit.edu	37	7	100187947	100187947	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO38	81545	broad.mit.edu	37	5	147807317	147807317	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO44	93611	broad.mit.edu	37	1	11718337	11718337	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40408619	40408619	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2A	2212	broad.mit.edu	37	1	161475296	161475296	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD1	89848	broad.mit.edu	37	5	141028826	141028826	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157667406	157667406	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLB	127943	broad.mit.edu	37	1	161693311	161693311	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124982245	124982245	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125023001	125023001	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95602831	95602831	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGG	2266	broad.mit.edu	37	4	155531077	155531077	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL1	2273	broad.mit.edu	37	X	135290815	135290815	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110113828	110113828	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKRP	79147	broad.mit.edu	37	19	47259284	47259284	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ35220	284131	broad.mit.edu	37	17	78388985	78388985	+	5'UTR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ36000	284124	broad.mit.edu	37	17	21904171	21904171	+	RNA	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84603695	84603695	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84608488	84608488	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128488820	128488820	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240306310	240306310	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240371687	240371687	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50047382	50047382	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FN1	2335	broad.mit.edu	37	2	216240284	216240284	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89424083	89424083	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1B	219595	broad.mit.edu	37	11	89424576	89424576	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49168333	49168333	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49179509	49179509	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXD3	27022	broad.mit.edu	37	1	63789535	63789535	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXRED1	55572	broad.mit.edu	37	11	126146969	126146969	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14770550	14770550	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39262664	39262664	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM2	341640	broad.mit.edu	37	13	39265303	39265303	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52179252	52179252	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37744546	37744546	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4306047	4306047	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYB	2533	broad.mit.edu	37	5	39169919	39169919	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112041086	112041086	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29576387	29576387	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABPA	2551	broad.mit.edu	37	21	27136489	27136489	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151562843	151562843	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR2	2570	broad.mit.edu	37	6	89977501	89977501	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT10	55568	broad.mit.edu	37	5	153765889	153765889	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51753051	51753051	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173269920	173269920	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GARNL3	84253	broad.mit.edu	37	9	130149691	130149691	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9846526	9846526	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS7	8522	broad.mit.edu	37	17	9939766	9939766	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBA3	57733	broad.mit.edu	37	4	22737879	22737879	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT4	51301	broad.mit.edu	37	5	74325326	74325326	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDA	9615	broad.mit.edu	37	9	74764461	74764461	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF10	2662	broad.mit.edu	37	10	48429294	48429294	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1	2672	broad.mit.edu	37	1	92944029	92944029	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM2	84340	broad.mit.edu	37	5	74041686	74041686	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFRA1	2674	broad.mit.edu	37	10	117884855	117884855	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGA1	26088	broad.mit.edu	37	22	38026076	38026076	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGT7	2686	broad.mit.edu	37	20	33447221	33447221	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61994884	61994884	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42718183	42718183	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIP	2695	broad.mit.edu	37	17	47041652	47041652	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA10	84694	broad.mit.edu	37	6	90604176	90604176	+	5'Flank	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJA1	2697	broad.mit.edu	37	6	121768044	121768044	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA2	2742	broad.mit.edu	37	X	14599363	14599363	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175649873	175649873	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129383910	129383910	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129429874	129429874	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT1D1	144423	broad.mit.edu	37	12	129467749	129467749	+	3'UTR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLTP	51228	broad.mit.edu	37	12	110295522	110295522	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58714572	58714572	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYR1	84656	broad.mit.edu	37	16	4867586	4867586	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMDS	2762	broad.mit.edu	37	6	1624688	1624688	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPR	2766	broad.mit.edu	37	6	16295298	16295298	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA1	2800	broad.mit.edu	37	9	127651396	127651396	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGB1	2804	broad.mit.edu	37	3	121396161	121396161	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR1	9527	broad.mit.edu	37	17	28837893	28837893	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1	2805	broad.mit.edu	37	10	101157291	101157291	+	3'UTR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP9	2815	broad.mit.edu	37	3	128780876	128780876	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD1L	23171	broad.mit.edu	37	3	32180188	32180188	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176883175	176883175	+	Intron	SNP	C	T	T	rs146989777	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR120	338557	broad.mit.edu	37	10	95335955	95335955	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333674	27333674	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR173	54328	broad.mit.edu	37	X	53106887	53106887	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR174	84636	broad.mit.edu	37	X	78427094	78427094	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR31	2853	broad.mit.edu	37	6	167570787	167570787	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90052969	90052969	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5C	55890	broad.mit.edu	37	17	72443246	72443246	+	3'UTR	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1B	57476	broad.mit.edu	37	11	123489025	123489025	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50660724	50660724	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA1	2890	broad.mit.edu	37	5	153175029	153175029	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	101878809	101878809	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37346220	37346220	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2A	2903	broad.mit.edu	37	16	9927801	9927801	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47440838	47440838	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110215789	110215789	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSX2	170825	broad.mit.edu	37	4	54966627	54966627	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2A2	2958	broad.mit.edu	37	15	59944431	59944431	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H4	2968	broad.mit.edu	37	6	30876868	30876868	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C3	9330	broad.mit.edu	37	2	197637761	197637761	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C5	9328	broad.mit.edu	37	9	135926292	135926292	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTPBP3	84705	broad.mit.edu	37	19	17452350	17452350	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108634989	108634989	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY1A2	2977	broad.mit.edu	37	11	106617425	106617425	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUF1	60558	broad.mit.edu	37	4	44683138	44683138	+	Splice_Site	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUSBP1	728411	broad.mit.edu	37	5	21459529	21459529	+	5'Flank	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7886947	7886947	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122641191	122641191	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS4	54930	broad.mit.edu	37	14	23421778	23421778	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS6	54801	broad.mit.edu	37	9	19093229	19093229	+	Missense_Mutation	SNP	G	A	A	rs151253216		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156533888	156533888	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCLS1	3059	broad.mit.edu	37	3	121363834	121363834	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN4	10021	broad.mit.edu	37	15	73617522	73617522	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18705895	18705895	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242179037	242179037	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236719428	236719429	+	Frame_Shift_Ins	INS	-	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236722329	236722329	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	40998210	40998210	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	40999828	40999828	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197184360	197184360	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW2	57520	broad.mit.edu	37	2	197189755	197189755	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELB	92797	broad.mit.edu	37	12	66704131	66704131	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HELQ	113510	broad.mit.edu	37	4	84374582	84374582	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPH	9843	broad.mit.edu	37	X	65427035	65427035	+	Splice_Site	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2P4	440362	broad.mit.edu	37	16	32163435	32163435	+	RNA	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28538288	28538288	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC5	51191	broad.mit.edu	37	4	89383387	89383387	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HFE2	148738	broad.mit.edu	37	1	145416370	145416370	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHAT	55733	broad.mit.edu	37	1	210522330	210522330	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHLA2	11148	broad.mit.edu	37	3	108095379	108095379	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBCH	26275	broad.mit.edu	37	2	191175545	191175545	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIF3A	64344	broad.mit.edu	37	19	46832652	46832652	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1	3092	broad.mit.edu	37	7	75187482	75187482	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BL	8340	broad.mit.edu	37	6	27775547	27775547	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H2BN	8341	broad.mit.edu	37	6	27806822	27806822	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29797448	29797448	+	Silent	SNP	G	T	T	rs17875406		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185703873	185703873	+	5'UTR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55360211	55360211	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HN1L	90861	broad.mit.edu	37	16	1749019	1749019	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121426785	121426785	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF1A	6927	broad.mit.edu	37	12	121439028	121439028	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOMER3	9454	broad.mit.edu	37	19	19049118	19049118	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD2	150280	broad.mit.edu	37	22	30533480	30533480	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27147572	27147572	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB13	10481	broad.mit.edu	37	17	46805973	46805973	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB6	3216	broad.mit.edu	37	17	46673820	46673820	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46691845	46691845	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD1	3231	broad.mit.edu	37	2	177054863	177054863	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRASLS5	117245	broad.mit.edu	37	11	63233728	63233728	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRC	3270	broad.mit.edu	37	19	49658175	49658175	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175110494	175110494	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH2	3274	broad.mit.edu	37	5	175110497	175110497	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B12	51144	broad.mit.edu	37	11	43775601	43775601	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B3	3293	broad.mit.edu	37	9	99003063	99003063	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B3	3293	broad.mit.edu	37	9	99007594	99007594	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118434464	118434464	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPD1	3329	broad.mit.edu	37	2	198363449	198363449	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22174305	22174305	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTN3	3347	broad.mit.edu	37	4	70896519	70896519	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3E	285242	broad.mit.edu	37	3	183819226	183819226	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53634608	53634608	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71163573	71163573	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM3	3385	broad.mit.edu	37	19	10446542	10446542	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52876494	52876494	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187075	21187075	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27688470	27688470	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2BP2	10644	broad.mit.edu	37	3	185434085	185434085	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGLON5	402665	broad.mit.edu	37	19	51830402	51830402	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL10RB	3588	broad.mit.edu	37	21	34652263	34652263	+	Intron	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67833639	67833639	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1R2	7850	broad.mit.edu	37	2	102644669	102644669	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	28677497	28677497	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL33	90865	broad.mit.edu	37	9	6252893	6252893	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL6R	3570	broad.mit.edu	37	1	154422427	154422427	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35871201	35871201	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166904644	166904644	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ILDR2	387597	broad.mit.edu	37	1	166905813	166905813	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMP5	162540	broad.mit.edu	37	17	43923548	43923548	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76712738	76712738	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62257095	62257096	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ING3	54556	broad.mit.edu	37	7	120606673	120606673	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INO80	54617	broad.mit.edu	37	15	41337298	41337298	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143007291	143007291	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5F	22876	broad.mit.edu	37	10	121583434	121583434	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15260636	15260636	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156815061	156815061	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156823990	156823990	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSR	3643	broad.mit.edu	37	19	7143119	7143119	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS1	26173	broad.mit.edu	37	7	1524941	1524941	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44424293	44424293	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO5	3843	broad.mit.edu	37	13	98655369	98655369	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO8	10526	broad.mit.edu	37	12	30784891	30784891	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCJ	654502	broad.mit.edu	37	3	158980621	158980621	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156535997	156535997	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRF8	3394	broad.mit.edu	37	16	85946793	85946794	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55360216	55360216	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX6	79190	broad.mit.edu	37	16	55362640	55362640	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISOC1	51015	broad.mit.edu	37	5	128430780	128430780	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA11	22801	broad.mit.edu	37	15	68661432	68661432	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52211397	52211397	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54798072	54798072	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA7	3679	broad.mit.edu	37	12	56088203	56088203	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15628602	15628602	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3663533	3663533	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30516760	30516760	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31332815	31332815	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITLN2	142683	broad.mit.edu	37	1	160914948	160914948	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITSN1	6453	broad.mit.edu	37	21	35255959	35255959	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IVNS1ABP	10625	broad.mit.edu	37	1	185276525	185276525	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAG1	182	broad.mit.edu	37	20	10630973	10630973	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15374315	15374315	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JARID2	3720	broad.mit.edu	37	6	15501359	15501359	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH2	57158	broad.mit.edu	37	20	42814932	42814932	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JUP	3728	broad.mit.edu	37	17	39766349	39766349	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAL1	3730	broad.mit.edu	37	X	8503684	8503684	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20113961	20113961	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20167364	20167364	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170374795	170374795	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD12	166348	broad.mit.edu	37	3	127646501	127646501	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30033301	30033301	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156139563	156139563	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCND2	3751	broad.mit.edu	37	7	119915238	119915238	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH6	81033	broad.mit.edu	37	17	61611612	61611612	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ1	3758	broad.mit.edu	37	11	128709648	128709648	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK10	54207	broad.mit.edu	37	14	88658539	88658539	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK13	56659	broad.mit.edu	37	14	90651131	90651131	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78771761	78771761	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB2	10242	broad.mit.edu	37	3	178560609	178560609	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154687378	154687378	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNN3	3782	broad.mit.edu	37	1	154842045	154842046	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ4	9132	broad.mit.edu	37	1	41289899	41289899	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNT2	343450	broad.mit.edu	37	1	196251442	196251442	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36763180	36763180	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD5	54442	broad.mit.edu	37	16	2752407	2752408	+	Frame_Shift_Del	DEL	CC	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELC1	79070	broad.mit.edu	37	13	103441508	103441508	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEAP1	9817	broad.mit.edu	37	19	10599996	10599997	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0090	23065	broad.mit.edu	37	1	19566829	19566829	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73487509	73487509	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126049569	126049569	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0196	9897	broad.mit.edu	37	8	126051107	126051107	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0564	23078	broad.mit.edu	37	13	42142257	42142257	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123128714	123128714	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1244	57221	broad.mit.edu	37	6	138628268	138628268	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72324037	72324037	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1407	57577	broad.mit.edu	37	3	113775342	113775342	+	5'UTR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94004362	94004362	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94088960	94088960	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100013133	100013133	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138545903	138545903	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1632	57724	broad.mit.edu	37	18	43532389	43532389	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1644	85352	broad.mit.edu	37	22	44692577	44692577	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36870433	36870433	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73963423	73963423	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16352495	16352495	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1B	23095	broad.mit.edu	37	1	10421944	10421944	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39696650	39696650	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26A	26153	broad.mit.edu	37	14	104642496	104642496	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45223725	45223725	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45228015	45228015	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF3C	3797	broad.mit.edu	37	2	26177091	26177091	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF6	221458	broad.mit.edu	37	6	39554039	39554039	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLC1	3831	broad.mit.edu	37	14	104135917	104135917	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC10	23008	broad.mit.edu	37	7	129764423	129764424	+	Intron	DNP	GA	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC3	116138	broad.mit.edu	37	6	42985754	42985754	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL18	23276	broad.mit.edu	37	3	47371646	47371646	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70293684	70293684	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70681210	70681210	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL25	64410	broad.mit.edu	37	15	86312160	86312160	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL2	11275	broad.mit.edu	37	4	166238894	166238894	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL38	340359	broad.mit.edu	37	8	124658090	124658090	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL7	55975	broad.mit.edu	37	7	23180294	23180294	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK15	55554	broad.mit.edu	37	19	51329005	51329005	+	3'UTR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK5	25818	broad.mit.edu	37	19	51451956	51451956	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRC1	3821	broad.mit.edu	37	12	10603114	10603114	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186459875	186459875	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123103061	123103061	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KPNA5	3841	broad.mit.edu	37	6	117037484	117037484	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38953472	38953472	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT2	3849	broad.mit.edu	37	12	53040623	53040623	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT39	390792	broad.mit.edu	37	17	39122621	39122621	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6C	286887	broad.mit.edu	37	12	52865406	52865406	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT84	3890	broad.mit.edu	37	12	52778742	52778742	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-5	83895	broad.mit.edu	37	17	39186230	39186230	+	5'Flank	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-12	386685	broad.mit.edu	37	21	46117901	46117901	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-3	386682	broad.mit.edu	37	21	45978229	45978229	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654988	31654988	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-11	440051	broad.mit.edu	37	11	71293997	71293997	+	5'Flank	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-1	337966	broad.mit.edu	37	21	31986077	31986077	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP8-1	337879	broad.mit.edu	37	21	32185344	32185344	+	3'UTR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-9	81870	broad.mit.edu	37	17	39405902	39405902	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP9-9	81870	broad.mit.edu	37	17	39411549	39411549	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35979449	35979449	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	118198721	118198721	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153130793	153130793	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153138665	153138665	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL4	91133	broad.mit.edu	37	18	6046656	6046656	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LALBA	3906	broad.mit.edu	37	12	48962264	48962264	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	6947103	6947103	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112466086	112466086	+	Silent	SNP	C	A	A	rs142559688	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB1	3912	broad.mit.edu	37	7	107643405	107643405	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107696354	107696354	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183079766	183079766	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP6	55323	broad.mit.edu	37	15	71125260	71125260	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LATS1	9113	broad.mit.edu	37	6	149982847	149982847	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCA5L	150082	broad.mit.edu	37	21	40778136	40778136	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1E	353135	broad.mit.edu	37	1	152759771	152759772	+	5'UTR	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE3E	353145	broad.mit.edu	37	1	152538491	152538491	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136575357	136575357	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDHB	3945	broad.mit.edu	37	12	21788509	21788509	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD3	23592	broad.mit.edu	37	12	65639480	65639480	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LENG8	114823	broad.mit.edu	37	19	54967589	54967589	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS4	3960	broad.mit.edu	37	19	39292692	39292692	+	Silent	SNP	C	A	A	rs111747864	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS9	3965	broad.mit.edu	37	17	25967533	25967533	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGR4	55366	broad.mit.edu	37	11	27393064	27393064	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206775925	206775925	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106662	55106662	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA3	11026	broad.mit.edu	37	19	54804020	54804020	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA4	23547	broad.mit.edu	37	19	54850419	54850419	+	5'UTR	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB1	10859	broad.mit.edu	37	19	55144158	55144158	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPA	3988	broad.mit.edu	37	10	90982123	90982123	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645332	645332	broad.mit.edu	37	11	67570489	67570489	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78213669	78213669	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC649330	649330	broad.mit.edu	37	1	12907644	12907644	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650368	650368	broad.mit.edu	37	11	3427871	3427871	+	RNA	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22516926	22516926	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22556531	22556531	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22724058	22724058	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN3	64900	broad.mit.edu	37	20	39983387	39983387	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPO	4025	broad.mit.edu	37	17	56332366	56332366	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400075	40400075	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN2	57497	broad.mit.edu	37	6	40400642	40400642	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRMP	4033	broad.mit.edu	37	12	25260973	25260973	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141115561	141115561	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141819801	141819801	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141986830	141986830	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57589573	57589573	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170048424	170048424	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44116768	44116768	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC16B	90668	broad.mit.edu	37	14	24524410	24524410	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC27	80313	broad.mit.edu	37	10	134175165	134175165	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC39	127495	broad.mit.edu	37	1	100618083	100618083	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC45	201255	broad.mit.edu	37	17	79982204	79982204	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85517991	85517991	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204587561	204587561	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN2	10446	broad.mit.edu	37	1	204587761	204587761	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80530456	80530456	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77746563	77746563	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRTM2	654429	broad.mit.edu	37	12	1943850	1943850	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115560780	115560780	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM2	57819	broad.mit.edu	37	6	31774499	31774499	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74989535	74989535	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	75070356	75070356	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46480816	46480816	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41804845	41804845	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	24759748	24759748	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25099005	25099005	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPLA2P1	653639	broad.mit.edu	37	6	33333606	33333606	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPLA2P1	653639	broad.mit.edu	37	6	33333688	33333688	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30915711	30915711	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20107322	20107322	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAB21L1	4081	broad.mit.edu	37	13	36049419	36049419	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39696958	39696958	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166987041	166987041	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA6	4105	broad.mit.edu	37	X	151870085	151870085	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78755015	78755015	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65271399	65271399	+	RNA	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109183385	109183385	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MANBAL	63905	broad.mit.edu	37	20	35929811	35929811	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	68065081	68065081	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210565126	210565126	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K11	4296	broad.mit.edu	37	11	65373321	65373321	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K2	10746	broad.mit.edu	37	2	128072409	128072409	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71209206	71209206	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP4K4	9448	broad.mit.edu	37	2	102490092	102490092	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK1	4139	broad.mit.edu	37	1	220808735	220808735	+	Silent	SNP	G	C	C	rs148023363		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186943419	186943419	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186947728	186947728	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST1	22983	broad.mit.edu	37	19	12969280	12969280	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST2	23139	broad.mit.edu	37	1	46487486	46487486	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAST4	375449	broad.mit.edu	37	5	66458488	66458488	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC5R	4161	broad.mit.edu	37	18	13825904	13825904	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113729480	113729480	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2	4168	broad.mit.edu	37	X	138686914	138686914	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM5	4174	broad.mit.edu	37	22	35804341	35804341	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM7	4176	broad.mit.edu	37	7	99697637	99697637	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12L	116931	broad.mit.edu	37	3	150877616	150877616	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60039226	60039226	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF9	1955	broad.mit.edu	37	9	123370269	123370269	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEI1	150365	broad.mit.edu	37	22	42180489	42180489	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS2	4212	broad.mit.edu	37	15	37184518	37184518	+	Silent	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEOX2	4223	broad.mit.edu	37	7	15652021	15652021	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METT11D1	64745	broad.mit.edu	37	14	21463338	21463338	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFAP1	4236	broad.mit.edu	37	15	44101975	44101975	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFF	56947	broad.mit.edu	37	2	228220378	228220378	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFRP	83552	broad.mit.edu	37	11	119217211	119217211	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD1	64747	broad.mit.edu	37	3	158541420	158541420	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141752635	141752635	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141759384	141759384	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	42021492	42021492	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC42105	167359	broad.mit.edu	37	5	43277259	43277259	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18362208	18362208	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MID1	4281	broad.mit.edu	37	X	10427696	10427696	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR495	574453	broad.mit.edu	37	14	101500027	101500027	+	5'Flank	SNP	C	A	A	rs113479942	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR509-2	100126301	broad.mit.edu	37	X	146340526	146340526	+	5'Flank	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR509-2	100126301	broad.mit.edu	37	X	146341111	146341111	+	5'Flank	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKI67	4288	broad.mit.edu	37	10	129903225	129903225	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKS1	54903	broad.mit.edu	37	17	56288035	56288035	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLC1	23209	broad.mit.edu	37	22	50515285	50515285	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT6	4302	broad.mit.edu	37	17	36873657	36873657	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154862057	154862057	+	Intron	SNP	C	G	G	rs149379903	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89086923	89086923	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89128820	89128820	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP17	4326	broad.mit.edu	37	12	132325149	132325149	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102667956	102667956	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50572981	50572981	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX1	259249	broad.mit.edu	37	11	18955953	18955953	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL16	54948	broad.mit.edu	37	11	59573990	59573990	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL20	55052	broad.mit.edu	37	1	1342158	1342158	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41345224	41345224	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41345258	41345258	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41345321	41345321	+	5'UTR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSGN1	343930	broad.mit.edu	37	2	17997990	17997990	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSLNL	401827	broad.mit.edu	37	16	823175	823175	+	Frame_Shift_Del	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST4	51765	broad.mit.edu	37	X	131202484	131202484	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA2	9219	broad.mit.edu	37	11	62364067	62364067	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR2	8898	broad.mit.edu	37	11	95569395	95569395	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11174929	11174929	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9065838	9065838	+	Nonsense_Mutation	SNP	G	C	C	rs142782534	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9076419	9076419	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC4	4585	broad.mit.edu	37	3	195498653	195498653	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1267369	1267369	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1267459	1267460	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113459600	113459600	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49403171	49403171	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MVP	9961	broad.mit.edu	37	16	29845114	29845114	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC1	4604	broad.mit.edu	37	12	102020717	102020717	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC3	4607	broad.mit.edu	37	11	47363610	47363610	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPH	4608	broad.mit.edu	37	1	203144721	203144721	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77713245	77713245	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYEF2	50804	broad.mit.edu	37	15	48451078	48451078	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH1	4619	broad.mit.edu	37	17	10415871	10415871	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23872645	23872645	+	Silent	SNP	C	T	T	rs178646		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23897948	23897948	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL1	4632	broad.mit.edu	37	2	211163028	211163028	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109562285	109562285	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109817503	109817503	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18A	399687	broad.mit.edu	37	17	27425944	27425944	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26168354	26168354	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1B	4430	broad.mit.edu	37	2	192278789	192278789	+	Missense_Mutation	SNP	C	G	G	rs1140896		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52645878	52645878	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5A	4644	broad.mit.edu	37	15	52646177	52646177	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5C	55930	broad.mit.edu	37	15	52517702	52517702	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7A	4647	broad.mit.edu	37	11	76872197	76872197	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128339977	128339977	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1926275	1926275	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA50	80218	broad.mit.edu	37	3	113442765	113442765	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	174974218	174974218	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175184908	175184908	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NADSYN1	55191	broad.mit.edu	37	11	71209592	71209592	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101707770	101707770	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101720126	101720126	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101728339	101728339	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101760057	101760057	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101944443	101944443	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAP1L3	4675	broad.mit.edu	37	X	92926978	92926978	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT2	10	broad.mit.edu	37	8	18258446	18258446	+	3'UTR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78400535	78400535	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBL1	4681	broad.mit.edu	37	1	19981647	19981647	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBN	4683	broad.mit.edu	37	8	90983304	90983304	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148004683	148004683	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF7	343505	broad.mit.edu	37	1	120382993	120382993	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113105857	113105857	+	Missense_Mutation	SNP	C	A	A	rs117485712	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133721194	133721194	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133721292	133721292	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOR1	9611	broad.mit.edu	37	17	16055348	16055348	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00169	400508	broad.mit.edu	37	16	21327258	21327258	+	RNA	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00207	388910	broad.mit.edu	37	22	44963097	44963097	+	5'Flank	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDC80	10403	broad.mit.edu	37	18	2599102	2599102	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDC80	10403	broad.mit.edu	37	18	2606291	2606291	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDEL1	81565	broad.mit.edu	37	17	8363341	8363341	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDFIP2	54602	broad.mit.edu	37	13	80117712	80117712	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDN	4692	broad.mit.edu	37	15	23932040	23932040	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS1	4719	broad.mit.edu	37	2	206988867	206988867	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152522680	152522680	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20959473	20959473	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFU1	27247	broad.mit.edu	37	2	69646616	69646616	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGFR	4804	broad.mit.edu	37	17	47583600	47583600	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHLRC1	378884	broad.mit.edu	37	6	18122334	18122334	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHP2L1	4809	broad.mit.edu	37	22	42084837	42084837	+	5'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPAL2	79815	broad.mit.edu	37	8	99205191	99205191	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	124125384	124125384	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125144452	125144452	+	3'UTR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32477605	32477605	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539944	56539944	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP7	199713	broad.mit.edu	37	19	55453136	55453136	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183253712	183253712	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183273936	183273936	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NNT	23530	broad.mit.edu	37	5	43667369	43667369	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL9	79707	broad.mit.edu	37	1	6585875	6585875	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO3	408050	broad.mit.edu	37	16	16346086	16346089	+	Intron	DEL	ACTT	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS2	4843	broad.mit.edu	37	17	26091019	26091019	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32164902	32164902	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOV	4856	broad.mit.edu	37	8	120430210	120430210	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89073112	89073112	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89075295	89075295	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89185034	89185034	+	Silent	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPC1L1	29881	broad.mit.edu	37	7	44579390	44579390	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP4	261734	broad.mit.edu	37	1	5993291	5993291	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36342066	36342066	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108497812	108497812	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E1	7101	broad.mit.edu	37	6	108499305	108499305	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR5A2	2494	broad.mit.edu	37	1	200008904	200008904	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRF1	4899	broad.mit.edu	37	7	129349025	129349025	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP2	83714	broad.mit.edu	37	12	2937708	2937708	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRK	203447	broad.mit.edu	37	X	105179112	105179112	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP1	8829	broad.mit.edu	37	10	33510591	33510591	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50282182	50282182	+	Intron	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50692672	50692672	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN2	9379	broad.mit.edu	37	11	64435166	64435166	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN7	79730	broad.mit.edu	37	4	40778314	40778314	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107866742	107866742	+	Intron	SNP	T	A	A	rs76871213	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156846215	156846215	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88680696	88680696	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDCD1	84955	broad.mit.edu	37	8	110255539	110255539	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP210L	91181	broad.mit.edu	37	1	154033352	154033352	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH1	30010	broad.mit.edu	37	7	8791441	8791441	+	3'UTR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113440632	113440632	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OASL	8638	broad.mit.edu	37	12	121465579	121465579	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228529168	228529168	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228559662	228559662	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28231772	28231772	+	Silent	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCIAD1	54940	broad.mit.edu	37	4	48852087	48852087	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50966631	50966631	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGG1	4968	broad.mit.edu	37	3	9800995	9800995	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLAH	55301	broad.mit.edu	37	10	15103717	15103717	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2B	25903	broad.mit.edu	37	1	161967494	161967494	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLR1	4973	broad.mit.edu	37	12	10312526	10312526	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193360615	193360615	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPCML	4978	broad.mit.edu	37	11	132305962	132305962	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A7	121364	broad.mit.edu	37	12	55615073	55615073	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10C1	442194	broad.mit.edu	37	6	29408588	29408588	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G2	26534	broad.mit.edu	37	14	22102184	22102185	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390109	158390110	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10X1	128367	broad.mit.edu	37	1	158549292	158549292	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H6	122748	broad.mit.edu	37	14	20692166	20692166	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1C1	26188	broad.mit.edu	37	1	247920946	247920946	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1F2P	26184	broad.mit.edu	37	16	3265782	3265782	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657162	143657162	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2H2	7932	broad.mit.edu	37	6	29555766	29555766	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248185758	248185758	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248262731	248262731	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366656	248366656	+	Missense_Mutation	SNP	G	T	T	rs143959338		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308574	248308574	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248309310	248309310	+	Silent	SNP	C	A	A	rs150067628	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T12	127064	broad.mit.edu	37	1	248458349	248458349	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248436751	248436751	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T33	391195	broad.mit.edu	37	1	248437204	248437204	+	5'Flank	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T4	127074	broad.mit.edu	37	1	248525429	248525429	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2W5	441932	broad.mit.edu	37	1	247655069	247655069	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51411635	51411635	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51411646	51411647	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322489	55322489	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322750	55322750	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C16	219428	broad.mit.edu	37	11	55339835	55339835	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C3	256144	broad.mit.edu	37	11	48346634	48346634	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433513	55433513	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D6	219983	broad.mit.edu	37	11	59224981	59224981	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4F15	390649	broad.mit.edu	37	15	102358575	102358575	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404637	20404637	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K1	79544	broad.mit.edu	37	14	20404658	20404658	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K2	390431	broad.mit.edu	37	14	20344489	20344489	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M1	441670	broad.mit.edu	37	14	20249188	20249188	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20296192	20296192	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N3P	390539	broad.mit.edu	37	15	22413996	22413996	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612592	20612593	+	Missense_Mutation	DNP	AG	GA	GA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S1	256148	broad.mit.edu	37	11	48328183	48328183	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52B4	143496	broad.mit.edu	37	11	4389382	4389382	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56B1	387748	broad.mit.edu	37	11	5758321	5758321	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B2	390190	broad.mit.edu	37	11	58190721	58190721	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H1	26341	broad.mit.edu	37	3	97852089	97852089	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5J2	282775	broad.mit.edu	37	11	55944406	55944406	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55595315	55595315	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M8	219484	broad.mit.edu	37	11	56258247	56258247	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5R1	219479	broad.mit.edu	37	11	56185520	56185520	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6B2	389090	broad.mit.edu	37	2	240969745	240969745	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6B3	150681	broad.mit.edu	37	2	240984557	240984557	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6N2	81442	broad.mit.edu	37	1	158746544	158746544	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7A5	26659	broad.mit.edu	37	19	14938747	14938747	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B12	219858	broad.mit.edu	37	11	124412648	124412648	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J1	219477	broad.mit.edu	37	11	56128329	56128329	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9A4	130075	broad.mit.edu	37	7	141619431	141619431	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21921570	21921570	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL5	114879	broad.mit.edu	37	11	3114894	3114894	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL5	114879	broad.mit.edu	37	11	3140893	3140893	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31795838	31795838	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXA1L	5018	broad.mit.edu	37	14	23237424	23237424	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXTR	5021	broad.mit.edu	37	3	8809147	8809147	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX7	5027	broad.mit.edu	37	12	121600272	121600272	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC5	140886	broad.mit.edu	37	X	90690528	90690528	+	5'UTR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103260260	103260260	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23641470	23641470	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35457397	35457397	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD6B	84612	broad.mit.edu	37	20	49366952	49366952	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP10	84875	broad.mit.edu	37	8	145058780	145058780	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122446683	122446683	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150832647	150832647	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE2	399967	broad.mit.edu	37	11	125647478	125647478	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX1	5087	broad.mit.edu	37	1	164790683	164790683	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	100915132	100915132	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCCA	5095	broad.mit.edu	37	13	101179908	101179908	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134076053	134076053	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55617003	55617003	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61986680	61986680	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61986682	61986682	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHAC1	56135	broad.mit.edu	37	5	140307901	140307901	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB1	29930	broad.mit.edu	37	5	140432666	140432666	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140552601	140552601	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82583767	82583767	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82583852	82583852	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82784218	82784218	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82784423	82784423	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCMTD2	55251	broad.mit.edu	37	20	62905031	62905031	+	3'UTR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233225746	233225746	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71485880	71485880	+	Splice_Site	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCOLCE2	26577	broad.mit.edu	37	3	142537261	142537261	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78804121	78804121	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105166351	105166351	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165752902	165752902	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165809841	165809841	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165843907	165843907	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183070893	183070893	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1A	5136	broad.mit.edu	37	2	183095846	183095846	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4C	5143	broad.mit.edu	37	19	18324363	18324363	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144879613	144879613	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144882856	144882856	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE9A	5152	broad.mit.edu	37	21	44171128	44171128	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA1	5160	broad.mit.edu	37	X	19377730	19377730	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA3	2923	broad.mit.edu	37	15	44057715	44057715	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA3	2923	broad.mit.edu	37	15	44058167	44058167	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33271019	33271019	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5	5830	broad.mit.edu	37	12	7343064	7343064	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX5	5830	broad.mit.edu	37	12	7343349	7343349	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX6	5190	broad.mit.edu	37	6	42934570	42934570	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54985242	54985242	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKL	5211	broad.mit.edu	37	21	45736372	45736372	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKL	5211	broad.mit.edu	37	21	45736374	45736374	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKL	5211	broad.mit.edu	37	21	45739151	45739151	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAM1	5223	broad.mit.edu	37	10	99191974	99191974	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGCP	10404	broad.mit.edu	37	8	97892004	97892004	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGF	5228	broad.mit.edu	37	14	75420616	75420616	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK1	5230	broad.mit.edu	37	X	77381315	77381315	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71098938	71098938	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR2	9749	broad.mit.edu	37	6	144032928	144032928	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20L1	51105	broad.mit.edu	37	8	133816176	133816176	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34457329	34457329	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKA2	5256	broad.mit.edu	37	X	18942356	18942356	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGN	23556	broad.mit.edu	37	18	59757723	59757723	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGR	5284	broad.mit.edu	37	1	207105951	207105951	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGT	51604	broad.mit.edu	37	20	44049033	44049033	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIH1D1	55011	broad.mit.edu	37	19	49951240	49951240	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178916645	178916645	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R1	5295	broad.mit.edu	37	5	67588928	67588928	+	Splice_Site	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PION	54103	broad.mit.edu	37	7	76940745	76940745	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L1	168507	broad.mit.edu	37	7	47866971	47866971	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524789	51524789	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51701291	51701292	+	Intron	DNP	GC	AT	AT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186957600	186957600	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAC8L1	153770	broad.mit.edu	37	5	145463988	145463988	+	3'UTR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75671310	75671310	+	5'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28812608	28812608	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB2	5330	broad.mit.edu	37	15	40582826	40582826	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB3	5331	broad.mit.edu	37	11	64022322	64022322	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCE1	51196	broad.mit.edu	37	10	95791158	95791158	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG2	5336	broad.mit.edu	37	16	81969915	81969915	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH1	23007	broad.mit.edu	37	3	155212152	155212152	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144993348	144993348	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA6	22874	broad.mit.edu	37	1	204218336	204218336	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHB2	55041	broad.mit.edu	37	2	131948924	131948924	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHF2	79666	broad.mit.edu	37	8	96166319	96166319	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6528571	6528571	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHH2	130271	broad.mit.edu	37	2	43939499	43939499	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN2	123	broad.mit.edu	37	9	19116393	19116393	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC1	57125	broad.mit.edu	37	17	37226093	37226093	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA1	5361	broad.mit.edu	37	3	126731065	126731065	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208252544	208252544	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50719577	50719577	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50727191	50727191	+	Missense_Mutation	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118187611	118187611	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118307005	118307005	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPT1	87178	broad.mit.edu	37	2	55887294	55887294	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POC5	134359	broad.mit.edu	37	5	74990568	74990568	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLA1	5422	broad.mit.edu	37	X	24742503	24742503	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLDIP3	84271	broad.mit.edu	37	22	43010711	43010711	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1B	84172	broad.mit.edu	37	2	113304529	113304529	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79782083	79782083	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3C	10623	broad.mit.edu	37	1	145594089	145594089	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3D	661	broad.mit.edu	37	8	22106630	22106630	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3G	10622	broad.mit.edu	37	5	89781468	89781468	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103859	53103859	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POPDC2	64091	broad.mit.edu	37	3	119373414	119373414	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38145684	38145684	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553558	19553558	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPAPDC1A	196051	broad.mit.edu	37	10	122273465	122273465	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPARA	5465	broad.mit.edu	37	22	46594329	46594329	+	Frame_Shift_Del	DEL	G	-	-	rs146169560		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF1	5475	broad.mit.edu	37	X	18842157	18842157	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPHLN1	51535	broad.mit.edu	37	12	42681224	42681224	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPID	5481	broad.mit.edu	37	4	159631959	159631959	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170493776	170493776	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIH	10465	broad.mit.edu	37	1	43131649	43131649	+	Splice_Site	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63195545	63195545	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16A	84988	broad.mit.edu	37	8	145726036	145726036	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37529104	37529104	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP3CB	5532	broad.mit.edu	37	10	75239055	75239055	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94712934	94712934	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP4R4	57718	broad.mit.edu	37	14	94731152	94731152	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRAMEF10	343071	broad.mit.edu	37	1	12952861	12952861	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23518137	23518137	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527596	23527596	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68939499	68939499	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX2	80243	broad.mit.edu	37	8	68968154	68968154	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCSH	5589	broad.mit.edu	37	19	11552077	11552077	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCZ	5590	broad.mit.edu	37	1	2082425	2082425	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30103538	30103538	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53564515	53564515	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53667407	53667407	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRIR	5612	broad.mit.edu	37	11	76062273	76062273	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROC	5624	broad.mit.edu	37	2	128179008	128179008	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRODH2	58510	broad.mit.edu	37	19	36291052	36291052	+	Missense_Mutation	SNP	C	A	A	rs146900274		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40B	25766	broad.mit.edu	37	12	50025752	50025752	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1563585	1563585	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR21	643905	broad.mit.edu	37	2	240984465	240984465	+	5'Flank	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23B	389151	broad.mit.edu	37	3	138739045	138739045	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS23	11098	broad.mit.edu	37	11	86518646	86518646	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRTG	283659	broad.mit.edu	37	15	55965661	55965661	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMA6	5687	broad.mit.edu	37	14	35777332	35777332	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB8	5696	broad.mit.edu	37	6	32810063	32810063	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMC6	5706	broad.mit.edu	37	14	53178230	53178230	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMD7	5713	broad.mit.edu	37	16	74338073	74338073	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1099549	1099549	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11589785	11589786	+	Intron	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD3	374308	broad.mit.edu	37	10	27702206	27702206	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGER3	5733	broad.mit.edu	37	1	71512608	71512608	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFR	5737	broad.mit.edu	37	1	78959094	78959094	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTMA	5757	broad.mit.edu	37	2	232576100	232576100	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN3	5774	broad.mit.edu	37	9	112153798	112153798	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8376508	8376508	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8471018	8471018	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8492837	8492837	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44087746	44087746	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31453016	31453016	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31501649	31501649	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRIG	79037	broad.mit.edu	37	7	99818185	99818185	+	Missense_Mutation	SNP	C	A	A	rs141513122	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52233514	52233514	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52412322	52412322	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QARS	5859	broad.mit.edu	37	3	49135440	49135440	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP2	22841	broad.mit.edu	37	10	119768422	119768422	+	3'UTR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5C	5878	broad.mit.edu	37	17	40282492	40282492	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB7A	7879	broad.mit.edu	37	3	128483660	128483660	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTA	5875	broad.mit.edu	37	14	24737854	24737854	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABL2B	11158	broad.mit.edu	37	22	51208452	51208452	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RACGAP1P	83956	broad.mit.edu	37	12	45458126	45458126	+	RNA	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117859755	117859755	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51AP2	729475	broad.mit.edu	37	2	17697556	17697556	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD51L3	5892	broad.mit.edu	37	17	33433248	33433248	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54L	8438	broad.mit.edu	37	1	46739098	46739098	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RADIL	55698	broad.mit.edu	37	7	4917240	4917241	+	Missense_Mutation	DNP	CG	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA2	57186	broad.mit.edu	37	20	20616361	20616361	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21940106	21940106	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173787054	173787054	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173881122	173881122	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF4	11069	broad.mit.edu	37	2	173891527	173891527	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAPGEF6	51735	broad.mit.edu	37	5	130843796	130843796	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178269130	178269130	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF2	5924	broad.mit.edu	37	5	80513386	80513386	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49027259	49027259	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24574667	24574667	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM24	221662	broad.mit.edu	37	6	17284960	17284960	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48387892	48387892	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCL1	10171	broad.mit.edu	37	9	4826984	4826984	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH11	51109	broad.mit.edu	37	14	68151874	68151874	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253844	79253844	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254247	79254247	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REM2	161253	broad.mit.edu	37	14	23353842	23353842	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERE	473	broad.mit.edu	37	1	8505712	8505712	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111632432	111632432	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REV3L	5980	broad.mit.edu	37	6	111701255	111701255	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFPL2	10739	broad.mit.edu	37	22	32590329	32590329	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176104162	176104162	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107080806	107080806	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX6	222546	broad.mit.edu	37	6	117245729	117245729	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RG9MTD1	54931	broad.mit.edu	37	3	101283965	101283965	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGL3	57139	broad.mit.edu	37	19	11505191	11505191	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGR	5995	broad.mit.edu	37	10	86018323	86018323	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3424628	3424628	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7BP	401190	broad.mit.edu	37	5	63890757	63890757	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOU	58480	broad.mit.edu	37	1	228873487	228873487	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130898775	130898775	+	Silent	SNP	C	T	T	rs138726483	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIOK3	8780	broad.mit.edu	37	18	21044238	21044238	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIPK4	54101	broad.mit.edu	37	21	43161901	43161901	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87376966	87376966	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEN	29102	broad.mit.edu	37	5	31504659	31504659	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASET2	8635	broad.mit.edu	37	6	167344531	167344531	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF157	114804	broad.mit.edu	37	17	74155488	74155488	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30302726	30302726	+	3'UTR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30329599	30329599	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF180	285671	broad.mit.edu	37	5	63509778	63509778	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF5P1	286140	broad.mit.edu	37	8	38458248	38458248	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBLD3	28956	broad.mit.edu	37	1	156025152	156025159	+	Frame_Shift_Del	DEL	ACGACCGG	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROPN1	54763	broad.mit.edu	37	3	123695688	123695688	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORA	6095	broad.mit.edu	37	15	60803663	60803663	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77275562	77275562	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117681505	117681505	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117710495	117710495	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10480175	10480175	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895585	68895585	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL13AP3	645683	broad.mit.edu	37	14	56233047	56233047	+	RNA	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL15	6138	broad.mit.edu	37	3	23960103	23960103	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL5	6125	broad.mit.edu	37	1	93306380	93306380	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPN1	6184	broad.mit.edu	37	3	128356927	128356927	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRN3	54700	broad.mit.edu	37	16	15157044	15157044	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99116936	99116936	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO3	84870	broad.mit.edu	37	6	127440470	127440470	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSRC1	51319	broad.mit.edu	37	3	158261870	158261870	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTF1	23168	broad.mit.edu	37	15	41750015	41750015	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTF1	23168	broad.mit.edu	37	15	41769312	41769312	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN1	6252	broad.mit.edu	37	14	60212963	60212963	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL1	8607	broad.mit.edu	37	3	127831683	127831683	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165397868	165397868	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRG	6258	broad.mit.edu	37	1	165398074	165398074	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38950989	38950989	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38990388	38990388	+	Missense_Mutation	SNP	G	A	A	rs148426762	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	38995021	38995021	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39018312	39018312	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237753955	237753955	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237755119	237755119	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237802366	237802366	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237837442	237837442	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237870252	237870252	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237880687	237880687	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237895504	237895504	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33936683	33936683	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34129232	34129232	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL4	57167	broad.mit.edu	37	20	50405400	50405400	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD14	201191	broad.mit.edu	37	17	48193090	48193091	+	Intron	DNP	GC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169656278	169656278	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44368124	44368124	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMM50	25813	broad.mit.edu	37	22	44368860	44368860	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18458361	18458361	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB2	23314	broad.mit.edu	37	2	200137425	200137425	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50893413	50893413	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAF1	58506	broad.mit.edu	37	19	50149471	50149471	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166852589	166852589	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165970489	165970489	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN9A	6335	broad.mit.edu	37	2	167142778	167142778	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN1	9805	broad.mit.edu	37	7	29966033	29966033	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN2	90507	broad.mit.edu	37	17	45917699	45917699	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRN3	79634	broad.mit.edu	37	2	175260535	175260535	+	5'UTR	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4150307	4150307	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4152959	4152959	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71344890	71344890	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L4	284904	broad.mit.edu	37	22	30887627	30887627	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121652418	121652418	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121657897	121657897	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13845825	13845825	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83590818	83590818	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84666199	84666199	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9044500	9044500	+	Silent	SNP	C	A	A	rs150116452	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9238005	9238005	+	Intron	SNP	G	T	T	rs1806007	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115782711	115782711	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48022551	48022551	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48053316	48053316	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48062707	48062707	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55873029	55873029	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT5	5413	broad.mit.edu	37	22	19707369	19707369	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA10	51156	broad.mit.edu	37	14	94756593	94756593	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB13	5275	broad.mit.edu	37	18	61264295	61264295	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB2	5055	broad.mit.edu	37	18	61564841	61564841	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB6	5269	broad.mit.edu	37	6	2949149	2949149	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINC1	462	broad.mit.edu	37	1	173883728	173883728	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINE3	647174	broad.mit.edu	37	13	51921265	51921265	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3A1	10291	broad.mit.edu	37	22	30749096	30749096	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B2	10992	broad.mit.edu	37	11	65819837	65819837	+	5'UTR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37947142	37947142	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS17A	8227	broad.mit.edu	37	X	1720181	1720181	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67148111	67148111	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52070940	52070940	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201400787	201400787	+	Splice_Site	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL2	151246	broad.mit.edu	37	2	201437658	201437658	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D1A	4068	broad.mit.edu	37	X	123504071	123504071	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP2	6452	broad.mit.edu	37	4	2834173	2834173	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3BP4	23677	broad.mit.edu	37	2	235949508	235949508	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GL2	6456	broad.mit.edu	37	9	17789338	17789338	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51217150	51217150	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49182856	49182856	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHF	90525	broad.mit.edu	37	15	45470396	45470396	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC5	8778	broad.mit.edu	37	19	52130374	52130374	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIM1	6492	broad.mit.edu	37	6	100901485	100901485	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3A	25942	broad.mit.edu	37	15	75664471	75664471	+	Missense_Mutation	SNP	C	T	T	rs148486660		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB1	10326	broad.mit.edu	37	20	1546816	1546816	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1459098	1459098	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164786959	164786959	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164792546	164792546	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46289057	46289057	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A2	6555	broad.mit.edu	37	13	103718716	103718716	+	Translation_Start_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A6	345274	broad.mit.edu	37	4	87749288	87749288	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A1	6561	broad.mit.edu	37	7	122763294	122763294	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC13A2	9058	broad.mit.edu	37	17	26816185	26816185	+	Intron	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A1	6568	broad.mit.edu	37	6	25830928	25830928	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63067051	63067051	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A8	9376	broad.mit.edu	37	11	62762206	62762206	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A3	151295	broad.mit.edu	37	2	220032665	220032665	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A6	80024	broad.mit.edu	37	12	113742146	113742146	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A32	81034	broad.mit.edu	37	8	104419779	104419779	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A1	9154	broad.mit.edu	37	15	85486875	85486875	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A8	169026	broad.mit.edu	37	8	118165313	118165313	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234367459	234367459	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A10	124565	broad.mit.edu	37	17	79250762	79250762	+	Intron	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46633331	46633331	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18242214	18242215	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A12	221074	broad.mit.edu	37	10	18270153	18270153	+	Intron	SNP	A	G	G	rs79375232	byFrequency;by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A2	6520	broad.mit.edu	37	11	62656092	62656092	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC41A3	54946	broad.mit.edu	37	3	125727528	125727528	+	Intron	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75685015	75685015	+	Nonsense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33947472	33947472	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A8	9498	broad.mit.edu	37	12	51883654	51883654	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32477866	32477866	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A5	9152	broad.mit.edu	37	11	20657894	20657894	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A9	11136	broad.mit.edu	37	19	33355671	33355671	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40402518	40402518	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67291058	67291058	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2B1	11309	broad.mit.edu	37	11	74915580	74915580	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20569083	20569083	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168100408	168100408	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLPI	6590	broad.mit.edu	37	20	43883108	43883108	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2084172	2084172	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC2	6601	broad.mit.edu	37	12	56574664	56574664	+	Intron	SNP	G	C	C	rs148079823	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCE1	6605	broad.mit.edu	37	17	38787752	38787752	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG6	23293	broad.mit.edu	37	17	2195827	2195827	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD2	56950	broad.mit.edu	37	1	214497962	214497962	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84290252	84290252	+	Nonsense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD114-5	767581	broad.mit.edu	37	14	101421623	101421623	+	5'Flank	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-16	100033454	broad.mit.edu	37	15	25444509	25444509	+	5'Flank	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25326583	25326583	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPD1	6632	broad.mit.edu	37	18	19192284	19192284	+	5'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPE	6635	broad.mit.edu	37	1	203830709	203830709	+	5'Flank	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX29	92017	broad.mit.edu	37	16	12220441	12220441	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX33	257364	broad.mit.edu	37	15	75949596	75949596	+	3'UTR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOAT1	6646	broad.mit.edu	37	1	179310484	179310484	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108366795	108366795	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106675475	106675475	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106982828	106982828	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS2	6655	broad.mit.edu	37	14	50626680	50626680	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231313918	231313918	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231359144	231359144	+	Missense_Mutation	SNP	G	T	T	rs138814189	byFrequency	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231090527	231090527	+	5'UTR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118539144	118539144	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG17	200162	broad.mit.edu	37	1	118629688	118629688	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN1	494118	broad.mit.edu	37	X	144337134	144337134	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA17	128153	broad.mit.edu	37	1	217824369	217824369	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPDYE6	729597	broad.mit.edu	37	7	101989158	101989158	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35654782	35654782	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220353803	220353803	+	Nonsense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEN	23013	broad.mit.edu	37	1	16200955	16200955	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPG11	80208	broad.mit.edu	37	15	44865871	44865871	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR2E	6704	broad.mit.edu	37	1	153066113	153066113	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRYD5	84767	broad.mit.edu	37	11	55656573	55656573	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN2	6712	broad.mit.edu	37	11	66458681	66458681	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142731083	142731083	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142747502	142747502	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRBD1	55133	broad.mit.edu	37	2	45620234	45620234	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRL	6345	broad.mit.edu	37	16	4247930	4247930	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRPK3	26576	broad.mit.edu	37	X	153049512	153049512	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRXN1	140809	broad.mit.edu	37	20	629273	629273	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182794429	182794429	+	3'UTR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSH2	85464	broad.mit.edu	37	17	27959179	27959179	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST7	7982	broad.mit.edu	37	7	116769839	116769839	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104089375	104089375	+	Silent	SNP	C	T	T	rs143014449		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAMBPL1	57559	broad.mit.edu	37	10	90706914	90706914	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAR	6770	broad.mit.edu	37	8	38008229	38008229	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAU2	27067	broad.mit.edu	37	8	74515976	74515976	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63967652	63967652	+	Nonsense_Mutation	SNP	C	T	T	rs34986887		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK25	10494	broad.mit.edu	37	2	242441097	242441097	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK4	6789	broad.mit.edu	37	20	43600677	43600677	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRC	161497	broad.mit.edu	37	15	43910166	43910166	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX11	8676	broad.mit.edu	37	6	144508051	144508051	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53150368	53150368	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUFU	51684	broad.mit.edu	37	10	104269087	104269087	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70488298	70488298	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70517294	70517294	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70539927	70539927	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1C3	442038	broad.mit.edu	37	2	108881548	108881548	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48048526	48048526	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27009701	27009701	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27010556	27010556	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT6H	6830	broad.mit.edu	37	17	27011621	27011621	+	Silent	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113194166	113194166	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113275339	113275339	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP1	6847	broad.mit.edu	37	1	115418717	115418717	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10911082	10911082	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYF2	25949	broad.mit.edu	37	1	25555338	25555338	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152738281	152738281	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152780041	152780041	+	Frame_Shift_Del	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152826241	152826241	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152832221	152832221	+	Silent	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158482917	158482917	+	Intron	SNP	C	T	T	rs139733946	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT13	57586	broad.mit.edu	37	11	45268092	45268092	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT13	57586	broad.mit.edu	37	11	45275815	45275815	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51132709	51132709	+	Frame_Shift_Del	DEL	C	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAAR1	134864	broad.mit.edu	37	6	132966315	132966315	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4B	6875	broad.mit.edu	37	18	23845294	23845294	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF7L	54457	broad.mit.edu	37	X	100533868	100533868	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAOK3	51347	broad.mit.edu	37	12	118615075	118615075	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAX1BP1	8887	broad.mit.edu	37	7	27831774	27831774	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30688847	30688847	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10C	374403	broad.mit.edu	37	11	67172997	67172997	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D12	23232	broad.mit.edu	37	10	96259974	96259974	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47433074	47433074	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D26	353149	broad.mit.edu	37	17	15641499	15641499	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCCD1	55171	broad.mit.edu	37	3	186276173	186276173	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCC	6903	broad.mit.edu	37	6	42713854	42713854	+	5'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80887119	80887119	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBKBP1	9755	broad.mit.edu	37	17	45776993	45776993	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85446331	85446331	+	3'UTR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX18	9096	broad.mit.edu	37	6	85448392	85448392	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX21	30009	broad.mit.edu	37	17	45822274	45822274	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX22	50945	broad.mit.edu	37	X	79286266	79286266	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX3	6926	broad.mit.edu	37	12	115117297	115117297	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX4	9496	broad.mit.edu	37	17	59560493	59560493	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA3	6920	broad.mit.edu	37	1	23744405	23744405	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCERG1	10915	broad.mit.edu	37	5	145849157	145849157	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152059439	152059439	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152084937	152084937	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCP1	6950	broad.mit.edu	37	6	160201220	160201220	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCTN2	79867	broad.mit.edu	37	12	124179682	124179682	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP2	51567	broad.mit.edu	37	6	24667124	24667124	+	5'Flank	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115987680	115987680	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD7	23424	broad.mit.edu	37	9	100235934	100235934	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD9	122402	broad.mit.edu	37	14	104470657	104470657	+	Silent	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65274987	65274987	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20846470	20846470	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20852926	20852926	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TERF2	7014	broad.mit.edu	37	16	69391533	69391533	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2C	7022	broad.mit.edu	37	20	55206206	55206206	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFB1M	51106	broad.mit.edu	37	6	155618088	155618088	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFDP1	7027	broad.mit.edu	37	13	114288091	114288091	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB2	7042	broad.mit.edu	37	1	218614442	218614442	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2376003	2376003	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133920388	133920388	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169620156	169620156	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169635043	169635043	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THBS2	7058	broad.mit.edu	37	6	169637359	169637359	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11501711	11501711	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32519381	32519381	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD3	220359	broad.mit.edu	37	11	65124211	65124211	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	29993907	29993907	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30012003	30012003	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167020286	167020286	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLN1	7094	broad.mit.edu	37	9	35725780	35725780	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM7SF3	51768	broad.mit.edu	37	12	27143248	27143248	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC4	147798	broad.mit.edu	37	19	54675802	54675802	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO3	55002	broad.mit.edu	37	13	114152629	114152629	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO5A	145942	broad.mit.edu	37	15	38234612	38234612	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED10	10972	broad.mit.edu	37	14	75643138	75643138	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114961405	114961405	+	5'UTR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM161B	153396	broad.mit.edu	37	5	87492315	87492315	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184A	202915	broad.mit.edu	37	7	1586636	1586636	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM30A	55754	broad.mit.edu	37	6	75969092	75969092	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM51	55092	broad.mit.edu	37	1	15545961	15545961	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM67	91147	broad.mit.edu	37	8	94822191	94822191	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133723080	133723080	+	3'UTR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM87A	25963	broad.mit.edu	37	15	42503975	42503975	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68708348	68708348	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11D	9407	broad.mit.edu	37	4	68725318	68725318	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68935549	68935549	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11F	389208	broad.mit.edu	37	4	68956360	68956360	+	Splice_Site	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS12	283471	broad.mit.edu	37	12	51252604	51252604	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS12	283471	broad.mit.edu	37	12	51281193	51281193	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19647584	19647584	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19744627	19744627	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS9	360200	broad.mit.edu	37	19	2415870	2415870	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMX3	54495	broad.mit.edu	37	18	66381174	66381174	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF9	3604	broad.mit.edu	37	1	7995187	7995187	+	Nonsense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF13B	10673	broad.mit.edu	37	13	108922168	108922168	+	5'UTR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF13B	10673	broad.mit.edu	37	13	108959154	108959154	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS2	80351	broad.mit.edu	37	10	93604783	93604783	+	Missense_Mutation	SNP	G	T	T	rs145701051		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74954902	74954902	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNPO3	23534	broad.mit.edu	37	7	128641089	128641089	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175292522	175292522	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175306810	175306810	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372465	175372465	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372608	175372608	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934883	10934883	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10973801	10973801	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42232417	42232417	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110131512	110131512	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIB2	28951	broad.mit.edu	37	2	12858385	12858385	+	5'UTR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16	10626	broad.mit.edu	37	17	15554713	15554713	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM21	6737	broad.mit.edu	37	11	4411246	4411246	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM37	4591	broad.mit.edu	37	17	57168627	57168627	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72951939	72951939	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72987487	72987487	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77377872	77377872	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77378084	77378084	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234846213	234846213	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142575277	142575277	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142481391	142481392	+	Intron	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142482197	142482197	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81448772	81448772	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769850	31769850	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTBK1	84630	broad.mit.edu	37	6	43251343	43251343	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC18	118491	broad.mit.edu	37	10	75107969	75107969	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	33002842	33002842	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC33	23548	broad.mit.edu	37	5	40746842	40746842	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL12	23170	broad.mit.edu	37	22	43572445	43572445	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219618204	219618204	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL5	23093	broad.mit.edu	37	14	76175478	76175478	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL6	284076	broad.mit.edu	37	17	46846928	46846928	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179407655	179407655	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179441371	179441371	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179475105	179475105	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179500674	179500674	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179616095	179616095	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179646079	179646079	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179665039	179665039	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54941002	54941002	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3D	113457	broad.mit.edu	37	2	132233832	132233832	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRO3	7301	broad.mit.edu	37	15	41860509	41860509	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12704597	12704597	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1	55253	broad.mit.edu	37	7	66548534	66548534	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
U2AF1	7307	broad.mit.edu	37	21	44521481	44521481	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UAP1	6675	broad.mit.edu	37	1	162558376	162558376	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA2	10054	broad.mit.edu	37	19	34936047	34936047	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68547937	68547937	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBAP1	51271	broad.mit.edu	37	9	34249871	34249871	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43829722	43829722	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2CBP	90025	broad.mit.edu	37	6	83733734	83733734	+	Nonsense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2CBP	90025	broad.mit.edu	37	6	83733741	83733741	+	Nonsense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3A	7337	broad.mit.edu	37	15	25599515	25599515	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109935654	109935654	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5529825	5529825	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLNL	143630	broad.mit.edu	37	11	5537603	5537603	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTFL1	642623	broad.mit.edu	37	11	89819464	89819464	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN1	51035	broad.mit.edu	37	11	62444113	62444113	+	Intron	SNP	T	C	C	rs112293944		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96599463	96599463	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45A	55898	broad.mit.edu	37	15	91486151	91486151	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33482328	33482328	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC50	25972	broad.mit.edu	37	2	99226378	99226378	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176306197	176306197	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216172295	216172295	+	Silent	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132630679	132630679	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP26	83844	broad.mit.edu	37	X	132161441	132161441	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP26	83844	broad.mit.edu	37	X	132162273	132162273	+	Translation_Start_Site	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP36	57602	broad.mit.edu	37	17	76802967	76802967	+	Intron	SNP	C	A	A	rs138952849	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP8	9101	broad.mit.edu	37	15	50789393	50789393	+	Nonsense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52604958	52604958	+	Missense_Mutation	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23426100	23426100	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54172547	54172547	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79491010	79491010	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	79493301	79493301	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8555998	8555998	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18284112	18284112	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23426401	23426401	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	23427658	23427658	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	3571645	3571645	+	IGR	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48973013	48973013	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49002864	49002864	+	IGR	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053671	49053671	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50227375	50227375	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5058265	5058265	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	51484083	51484083	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55060014	55060014	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55086441	55086441	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55093354	55093354	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55198066	55198066	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56229903	56229903	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56738899	56738899	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89631153	89631153	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98435810	98435810	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	107295415	107295415	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127873433	127873433	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318652	34318652	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	52294934	52294934	+	IGR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53142972	53142972	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53547874	53547874	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	55196583	55196583	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61625645	61625645	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84843313	84843313	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	35252944	35252944	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	42943475	42943475	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52483272	52483272	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53983837	53983837	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56573537	56573537	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56573679	56573679	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68406690	68406690	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73277805	73277805	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73675057	73675057	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	82264494	82264494	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	88546338	88546338	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90824188	90824188	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806456	19806456	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807015	19807015	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084904	20084904	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20084973	20084973	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25736481	25736481	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	52622667	52622667	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82128032	82128032	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95100833	95100833	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50710313	50710313	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78197024	78197024	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31963635	31963635	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33373384	33373384	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605733	33605733	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661986	33661986	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34655548	34655548	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	15672547	15672547	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20674632	20674633	+	IGR	DNP	CC	AA	AA			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25988849	25988849	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26034301	26034301	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52031801	52031801	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15003088	15003088	+	IGR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20679884	20679884	+	IGR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20861431	20861431	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	21452430	21452430	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22498985	22498985	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22793174	22793174	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43787784	43787784	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106435202	106435202	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	120139418	120139418	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	13198769	13198769	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903234	148903234	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149261853	149261853	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153197945	153197945	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	158495196	158495196	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164326291	164326291	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166766224	166766224	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	20852947	20852947	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247363382	247363382	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247393225	247393225	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	29814829	29814829	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	35587602	35587602	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	80961795	80961795	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	10367422	10367422	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361283	12361283	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181024	11181024	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14757467	14757467	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14793925	14793925	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900727	14900727	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15377529	15377529	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17336780	17336780	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	29806101	29806101	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986570	34986570	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106831569	106831569	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	109494871	109494871	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130970971	130970971	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136960519	136960519	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570422	168570422	+	IGR	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181737842	181737842	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181737913	181737913	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186411926	186411926	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187867764	187867764	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994146	194994146	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208973114	208973114	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	223845917	223845917	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	231437816	231437816	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	4135957	4135958	+	IGR	DNP	CC	AT	AT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	58687514	58687514	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	71382113	71382113	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95637697	95637697	+	IGR	DEL	A	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	129754267	129754267	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	133921756	133921756	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145542432	145542432	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155830734	155830734	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	167606354	167606354	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175695454	175695454	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	182329162	182329162	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194476337	194476337	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75444484	75444484	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98031194	98031194	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109340457	109340457	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135865660	135865660	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135873384	135873384	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	145767399	145767399	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	16362934	16362934	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164187490	164187490	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	24659901	24659901	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27587141	27587141	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	27587256	27587256	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66959938	66959938	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70221008	70221008	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70281073	70281073	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	83196405	83196405	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	123966409	123966409	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14961432	14961432	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	153873899	153873899	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304881	20304881	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	52709731	52709731	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	56817469	56817469	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	68364801	68364801	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	68364971	68364971	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75048888	75048888	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75672727	75672727	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845893	84845893	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	98016544	98016544	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104465773	104465773	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	112938112	112938112	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	114160552	114160552	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	143664552	143664552	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	168688418	168688418	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	25272576	25272576	+	IGR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30437048	30437048	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3978279	3978279	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49241346	49241346	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57841630	57841630	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80779880	80779880	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87606951	87606951	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87831985	87831985	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	105766541	105766541	+	IGR	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	132854911	132854911	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	21260765	21260765	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	31370492	31370492	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255537	53255537	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53255893	53255893	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53930970	53930970	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55799976	55799976	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56754357	56754357	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63019541	63019542	+	IGR	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63465953	63465953	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76682363	76682363	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613325	84613325	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88194792	88194792	+	IGR	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43125818	43125818	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43528059	43528059	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47491012	47491012	+	IGR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	8819124	8819124	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	88801796	88801796	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109484927	109484927	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109932911	109932911	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	76263877	76263877	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	108812098	108812099	+	IGR	DNP	GG	TT	TT			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	108813219	108813219	+	IGR	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	110864327	110864327	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261871	127261871	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701395	145701395	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146280476	146280476	+	IGR	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	148890046	148890046	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	149399982	149399982	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	150395987	150395987	+	IGR	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	16217296	16217296	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39724942	39724942	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	40619513	40619513	+	IGR	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	44492608	44492608	+	IGR	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65276421	65276421	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	68003458	68003458	+	IGR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89367661	89367661	+	IGR	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	92542645	92542645	+	IGR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13842644	13842644	+	IGR	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70818814	70818814	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV1	7409	broad.mit.edu	37	19	6853853	6853853	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV2	7410	broad.mit.edu	37	9	136633700	136633700	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAV3	10451	broad.mit.edu	37	1	108299854	108299854	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82789668	82789668	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VDAC2	7417	broad.mit.edu	37	10	76981983	76981983	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN1	8876	broad.mit.edu	37	6	133004445	133004445	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133049855	133049855	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62250877	62250877	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12342995	12342995	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VRK3	51231	broad.mit.edu	37	19	50504063	50504063	+	Missense_Mutation	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98809275	98809275	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85656259	85656259	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR1	9948	broad.mit.edu	37	4	10079394	10079394	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR37	22884	broad.mit.edu	37	10	1175307	1175307	+	3'UTR	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR49	151790	broad.mit.edu	37	3	167246938	167246938	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR64	128025	broad.mit.edu	37	1	241904916	241904916	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53997423	53997423	+	Silent	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WFIKKN2	124857	broad.mit.edu	37	17	48917894	48917894	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNT8A	7478	broad.mit.edu	37	5	137424687	137424687	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WRNIP1	56897	broad.mit.edu	37	6	2770639	2770639	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108618685	108618685	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32437906	32437907	+	Intron	DEL	GA	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32456225	32456225	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WT1	7490	broad.mit.edu	37	11	32456227	32456227	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XDH	7498	broad.mit.edu	37	2	31587159	31587159	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168105192	168105192	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73065478	73065478	+	RNA	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30585071	30585071	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO6	23214	broad.mit.edu	37	16	28117828	28117828	+	Intron	DEL	G	-	-			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183493577	183493577	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YSK4	80122	broad.mit.edu	37	2	135744471	135744471	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBP1	81030	broad.mit.edu	37	20	56185196	56185196	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB7B	51043	broad.mit.edu	37	1	154987926	154987926	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H12C	85463	broad.mit.edu	37	11	110035917	110035917	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H13	23091	broad.mit.edu	37	13	46539289	46539289	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89063215	89063215	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H4	23211	broad.mit.edu	37	19	47587669	47587669	+	Missense_Mutation	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698577	111698577	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37126665	37126665	+	Silent	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC15	158866	broad.mit.edu	37	X	74742846	74742846	+	Nonsense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC3	51304	broad.mit.edu	37	3	44986847	44986847	+	Intron	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31608219	31608219	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31810747	31810747	+	Silent	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB2	9839	broad.mit.edu	37	2	145161404	145161404	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77618205	77618205	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77768283	77768283	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP64	55734	broad.mit.edu	37	20	50769144	50769144	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP82	284406	broad.mit.edu	37	19	36884607	36884607	+	Missense_Mutation	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPL1	7542	broad.mit.edu	37	11	64854853	64854853	+	Missense_Mutation	SNP	G	A	A	rs139876978		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE21	79038	broad.mit.edu	37	14	104194095	104194095	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC4	84107	broad.mit.edu	37	3	147114217	147114217	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN5	23660	broad.mit.edu	37	7	99129944	99129944	+	3'UTR	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT4	79698	broad.mit.edu	37	8	40438810	40438810	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ1	57178	broad.mit.edu	37	10	81052058	81052058	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM4	9202	broad.mit.edu	37	1	35862117	35862117	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF160	90338	broad.mit.edu	37	19	53577383	53577383	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF175	7728	broad.mit.edu	37	19	52090622	52090622	+	Silent	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22156888	22156888	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF20	7568	broad.mit.edu	37	19	12243979	12243979	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74587599	74587599	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF25	219749	broad.mit.edu	37	10	38241506	38241506	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF274	10782	broad.mit.edu	37	19	58723434	58723434	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF282	8427	broad.mit.edu	37	7	148903826	148903826	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87969729	87969729	+	Missense_Mutation	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF32	7580	broad.mit.edu	37	10	44139648	44139648	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF460	10794	broad.mit.edu	37	19	57803220	57803220	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF479	90827	broad.mit.edu	37	7	57188189	57188189	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF485	220992	broad.mit.edu	37	10	44100229	44100229	+	5'Flank	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF510	22869	broad.mit.edu	37	9	99521845	99521845	+	Missense_Mutation	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31040291	31040291	+	Silent	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF570	148268	broad.mit.edu	37	19	37966926	37966926	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF570	148268	broad.mit.edu	37	19	37975783	37975783	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF610	162963	broad.mit.edu	37	19	52870074	52870074	+	3'UTR	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56973727	56973727	+	Silent	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF670	93474	broad.mit.edu	37	1	247200851	247200852	+	Frame_Shift_Ins	INS	-	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF70	7621	broad.mit.edu	37	22	24086231	24086231	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF737	100129842	broad.mit.edu	37	19	20727617	20727617	+	Silent	SNP	C	A	A	rs143567096	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53959685	53959685	+	Missense_Mutation	SNP	G	T	T	rs145130738	by1000genomes	TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF781	163115	broad.mit.edu	37	19	38160518	38160518	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF79	7633	broad.mit.edu	37	9	130206394	130206394	+	Missense_Mutation	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804B	219578	broad.mit.edu	37	7	88965153	88965153	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF813	126017	broad.mit.edu	37	19	53987242	53987242	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF862	643641	broad.mit.edu	37	7	149558928	149558928	+	Silent	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF876P	642280	broad.mit.edu	37	4	247450	247450	+	RNA	SNP	A	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939341	22939341	+	Missense_Mutation	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB1	54764	broad.mit.edu	37	10	126670462	126670462	+	Intron	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN5A	79149	broad.mit.edu	37	19	56735007	56735007	+	Missense_Mutation	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZYG11B	79699	broad.mit.edu	37	1	53287252	53287252	+	Missense_Mutation	SNP	A	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131906218	131906218	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43283962	43283962	+	RNA	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101491271	101491271	+	5'Flank	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22294192	22294192	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22946655	22946655	+	Intron	SNP	A	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22981780	22981780	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22987458	22987458	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102312206	102312206	+	5'Flank	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22473178	22473178	+	RNA	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25422064	25422064	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25492679	25492679	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	91574885	91574885	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33013881	33013881	+	RNA	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	20688929	20688929	+	5'Flank	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	78293080	78293080	+	Missense_Mutation	SNP	T	C	C	rs149136204		TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	36913403	36913403	+	RNA	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	54290854	54290854	+	5'Flank	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	159336262	159336262	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	179557539	179557539	+	5'Flank	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	227598522	227598522	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	99473956	99473956	+	Intron	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	43095470	43095470	+	5'Flank	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15436765	15436765	+	Intron	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16255832	16255832	+	5'Flank	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89197009	89197009	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89320229	89320229	+	Intron	SNP	G	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533939	89533939	+	RNA	SNP	G	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90060313	90060313	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108493	90108493	+	Intron	SNP	G	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108925	90108925	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	88813671	88813671	+	Silent	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170422	24170422	+	Intron	SNP	C	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142157696	142157696	+	Intron	SNP	C	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142161921	142161921	+	Intron	SNP	T	C	C			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	37779805	37779805	+	Intron	SNP	T	A	A			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65220892	65220892	+	Intron	SNP	T	G	G			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150797	51150797	+	Missense_Mutation	SNP	C	T	T			TCGA-49-6743-01A-11D-1855-08	TCGA-49-6743-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
