Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
SPRR3	6707	broad.mit.edu	36	1	151242154	151242154	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151242154	151242154	SPRR3	1	C	C	G	22
PLXNA2	5362	broad.mit.edu	36	1	206283066	206283066	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	206283066	206283066	PLXNA2	1	G	G	A	39
USH2A	7399	broad.mit.edu	36	1	214323453	214323453	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	214323453	214323453	USH2A	1	C	C	T	19
C10orf137	26098	broad.mit.edu	36	10	127414265	127414265	+	Silent	SNP	A	A	G	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	127414265	127414265	C10orf137	10	A	A	G	3
MICALCL	84953	broad.mit.edu	36	11	12271730	12271730	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12271730	12271730	MICALCL	11	G	G	T	36
MICALCL	84953	broad.mit.edu	36	11	12272940	12272940	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	12272940	12272940	MICALCL	11	T	T	C	54
OR8K3	219473	broad.mit.edu	36	11	55843218	55843218	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55843218	55843218	OR8K3	11	T	T	G	63
ME3	10873	broad.mit.edu	36	11	85830125	85830125	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	85830125	85830125	ME3	11	G	G	A	37
ARHGEF12	23365	broad.mit.edu	36	11	119827526	119827526	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	119827526	119827526	ARHGEF12	11	C	C	T	27
MYF5	4617	broad.mit.edu	36	12	79635167	79635167	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	79635167	79635167	MYF5	12	G	G	T	44
LIG4	3981	broad.mit.edu	36	13	107659829	107659829	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	107659829	107659829	LIG4	13	C	C	A	30
TCF25	22980	broad.mit.edu	36	16	88505005	88505005	+	Missense_Mutation	SNP	A	A	C	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88505005	88505005	TCF25	16	A	A	C	9
GEMIN4	50628	broad.mit.edu	36	17	597333	597333	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	597333	597333	GEMIN4	17	C	C	A	22
TP53	7157	broad.mit.edu	36	17	7518915	7518915	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518915	7518915	TP53	17	T	T	C	49
CYP4F12	66002	broad.mit.edu	36	19	15655418	15655418	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15655418	15655418	CYP4F12	19	C	C	T	27
OR10H1	26539	broad.mit.edu	36	19	15779448	15779448	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15779448	15779448	OR10H1	19	C	C	T	19
PSG1	5669	broad.mit.edu	36	19	48067793	48067793	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	48067793	48067793	PSG1	19	G	G	T	47
POLD1	5424	broad.mit.edu	36	19	55610877	55610877	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	55610877	55610877	POLD1	19	C	C	T	23
KLF11	8462	broad.mit.edu	36	2	10103874	10103874	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10103874	10103874	KLF11	2	A	A	T	3
POLR1A	25885	broad.mit.edu	36	2	86108586	86108586	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	86108586	86108586	POLR1A	2	G	G	A	36
POTED	317754	broad.mit.edu	36	21	13922643	13922643	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13922643	13922643	POTED	21	A	A	G	11
OTOL1	131149	broad.mit.edu	36	3	162703943	162703943	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	162703943	162703943	OTOL1	3	T	T	C	58
POLK	51426	broad.mit.edu	36	5	74884060	74884060	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74884060	74884060	POLK	5	G	G	T	33
REEP5	7905	broad.mit.edu	36	5	112266101	112266101	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	112266101	112266101	REEP5	5	C	C	T	32
TGFBI	7045	broad.mit.edu	36	5	135417556	135417556	+	Silent	SNP	A	A	C	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	135417556	135417556	TGFBI	5	A	A	C	7
DST	667	broad.mit.edu	36	6	56505186	56505186	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	56505186	56505186	DST	6	C	C	G	32
EEPD1	80820	broad.mit.edu	36	7	36161160	36161160	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	36161160	36161160	EEPD1	7	G	G	T	38
SPDYE5	442590	broad.mit.edu	36	7	74962437	74962437	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74962437	74962437	SPDYE5	7	T	T	C	51
C9orf150	286343	broad.mit.edu	36	9	12765880	12765880	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	12765880	12765880	C9orf150	9	T	T	G	55
ZCCHC6	79670	broad.mit.edu	36	9	88113952	88113952	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	88113952	88113952	ZCCHC6	9	C	C	T	29
CTSL1	1514	broad.mit.edu	36	9	89533497	89533497	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	89533497	89533497	CTSL1	9	G	G	A	41
DSE	29940	broad.mit.edu	36	6	116863562	116863566	+	Frame_Shift_Del	DEL	CTTTC	-	CTTTC	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Frame_Shift_Del	DEL	116863562	116863566	DSE	6	CTTTC	-	CTTTC	32
TBP	6908	broad.mit.edu	36	6	170712938	170712939	+	In_Frame_Ins	INS	-	CAG	-	novel	Unknown	TCGA-59-2350-01	TCGA-59-2350-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Ins	INS	170712938	170712939	TBP	6	-	CAG	-	2
