Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2M	2	broad.mit.edu	37	12	9231857	9231857	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2M	2	broad.mit.edu	37	12	9231857	9231857	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57211523	57211523	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AATK	9625	broad.mit.edu	37	17	79094822	79094822	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AATK	9625	broad.mit.edu	37	17	79094822	79094822	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA12	26154	broad.mit.edu	37	2	215820145	215820145	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48314884	48314884	+	Nonsense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48337900	48337900	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48314884	48314884	+	Nonsense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48337900	48337900	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67250407	67250407	+	Intron	SNP	C	A	A	rs139464373	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA5	23461	broad.mit.edu	37	17	67250407	67250407	+	Intron	SNP	C	A	A	rs139464373	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123419912	123419912	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB9	23457	broad.mit.edu	37	12	123419912	123419912	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22068791	22068791	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC9	10060	broad.mit.edu	37	12	22068791	22068791	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89698682	89698682	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89698682	89698682	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100604424	100604424	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABI3BP	25890	broad.mit.edu	37	3	100604424	100604424	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179102625	179102625	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABL2	27	broad.mit.edu	37	1	179102625	179102625	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD8	27034	broad.mit.edu	37	11	134131719	134131719	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD8	27034	broad.mit.edu	37	11	134131719	134131719	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185686014	185686014	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL1	2180	broad.mit.edu	37	4	185686014	185686014	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131324551	131324551	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131324551	131324551	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR1B	10120	broad.mit.edu	37	2	98277062	98277062	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTR1B	10120	broad.mit.edu	37	2	98277062	98277062	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24184143	24184143	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM28	10863	broad.mit.edu	37	8	24184143	24184143	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106349907	106349907	+	Splice_Site	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106815880	106815880	+	RNA	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106833688	106833688	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106349907	106349907	+	Splice_Site	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106815880	106815880	+	RNA	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106833688	106833688	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5200305	5200305	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5209320	5209320	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5242137	5242137	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5200305	5200305	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5209320	5209320	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5242137	5242137	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100591842	100591842	+	Missense_Mutation	SNP	G	T	T	rs141306868		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100672250	100672250	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100591842	100591842	+	Missense_Mutation	SNP	G	T	T	rs141306868		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS17	170691	broad.mit.edu	37	15	100672250	100672250	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64640245	64640245	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64640245	64640245	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18905849	18905849	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18905849	18905849	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78288879	78288879	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCK1	57143	broad.mit.edu	37	14	78288879	78288879	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100201250	100201250	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100201250	100201250	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112028429	112028429	+	Silent	SNP	C	T	T	rs138501072		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112028429	112028429	+	Silent	SNP	C	T	T	rs138501072		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12356752	12356752	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFG3L2	10939	broad.mit.edu	37	18	12356752	12356752	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74349711	74349712	+	Intron	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74349711	74349712	+	Intron	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4832325	4832325	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AJAP1	55966	broad.mit.edu	37	1	4832325	4832325	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33292102	33292102	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33292102	33292102	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396338	38396338	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396338	38396338	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH8A1	64577	broad.mit.edu	37	6	135263563	135263563	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH8A1	64577	broad.mit.edu	37	6	135263563	135263563	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233246046	233246046	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPP	250	broad.mit.edu	37	2	233246046	233246046	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46455071	46455071	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMBRA1	55626	broad.mit.edu	37	11	46455071	46455071	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC2	29882	broad.mit.edu	37	9	140077570	140077570	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC2	29882	broad.mit.edu	37	9	140077570	140077570	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41561686	41561686	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54230859	54230859	+	5'UTR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54230859	54230859	+	5'UTR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95647950	95647950	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD19	138649	broad.mit.edu	37	9	95647950	95647950	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27375513	27375513	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD26	22852	broad.mit.edu	37	10	27375513	27375513	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD34B	340120	broad.mit.edu	37	5	79855060	79855060	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD34B	340120	broad.mit.edu	37	5	79855060	79855060	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98129586	98129587	+	Intron	DNP	GG	AT	AT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98129589	98129589	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98171639	98171640	+	Intron	DNP	TC	CA	CA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD36B	57730	broad.mit.edu	37	2	98171639	98171640	+	Intron	DNP	TC	CA	CA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD40	91369	broad.mit.edu	37	17	48776867	48776867	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD40	91369	broad.mit.edu	37	17	48776867	48776867	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45781954	45781954	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45781954	45781954	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77590550	77590551	+	5'Flank	DNP	CT	TA	TA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77590550	77590551	+	5'Flank	DNP	CT	TA	TA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99097244	99097244	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APAF1	317	broad.mit.edu	37	12	99097244	99097244	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72130971	72130971	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBA1	320	broad.mit.edu	37	9	72130971	72130971	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3A	200315	broad.mit.edu	37	22	39358206	39358206	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOBEC3A	200315	broad.mit.edu	37	22	39358206	39358206	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC1P1	342	broad.mit.edu	37	19	45430216	45430216	+	RNA	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC1P1	342	broad.mit.edu	37	19	45430216	45430216	+	RNA	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27327958	27327958	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APP	351	broad.mit.edu	37	21	27327958	27327958	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP12B	653437	broad.mit.edu	37	2	241622061	241622061	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP12B	653437	broad.mit.edu	37	2	241622061	241622061	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP7	364	broad.mit.edu	37	9	33385892	33385892	+	Intron	SNP	C	G	G	rs145467829	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115336760	115336760	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115336760	115336760	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72422487	72422487	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARAP1	116985	broad.mit.edu	37	11	72422487	72422487	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127231284	127231284	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127231284	127231284	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32915737	32915737	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP11A	9824	broad.mit.edu	37	15	32915737	32915737	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11187696	11187696	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11187696	11187696	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57867885	57867885	+	Silent	SNP	G	T	T	rs61758883	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP9	64333	broad.mit.edu	37	12	57867885	57867885	+	Silent	SNP	G	T	T	rs61758883	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF1	9138	broad.mit.edu	37	19	42406370	42406370	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF1	9138	broad.mit.edu	37	19	42406370	42406370	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123276740	123276740	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB15	142685	broad.mit.edu	37	7	123276740	123276740	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76387904	76387904	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76387904	76387904	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62491863	62491863	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPH	444	broad.mit.edu	37	8	62491863	62491863	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845701	176845701	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927584	176927584	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176845701	176845701	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176927584	176927584	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737396	119737396	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737396	119737396	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31324042	31324042	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31324042	31324042	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL1	51062	broad.mit.edu	37	14	51058328	51058328	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATL1	51062	broad.mit.edu	37	14	51058328	51058328	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47593016	47593016	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10D	57205	broad.mit.edu	37	4	47593016	47593016	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19760641	19760641	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP13A1	57130	broad.mit.edu	37	19	19760641	19760641	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42473541	42473541	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A3	478	broad.mit.edu	37	19	42473541	42473541	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58021691	58021691	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALNT1	2583	broad.mit.edu	37	12	58021691	58021691	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038784	11038784	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038784	11038784	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69728293	69728293	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69728293	69728293	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171504670	171504670	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L2	23215	broad.mit.edu	37	1	171504670	171504670	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31616640	31616640	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT3	7917	broad.mit.edu	37	6	31616640	31616640	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75269174	75269174	+	Silent	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAR1	9564	broad.mit.edu	37	16	75269174	75269174	+	Silent	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCCIP	56647	broad.mit.edu	37	10	127516263	127516263	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCCIP	56647	broad.mit.edu	37	10	127516263	127516263	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2A1	597	broad.mit.edu	37	15	80260011	80260011	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2A1	597	broad.mit.edu	37	15	80260011	80260011	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL6	604	broad.mit.edu	37	3	187447128	187447128	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL6	604	broad.mit.edu	37	3	187447128	187447128	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136594378	136594378	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCLAF1	9774	broad.mit.edu	37	6	136594378	136594378	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCO2	83875	broad.mit.edu	37	11	112085632	112085632	+	Missense_Mutation	SNP	C	A	A	rs140943596		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCO2	83875	broad.mit.edu	37	11	112085632	112085632	+	Missense_Mutation	SNP	C	A	A	rs140943596		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56857338	56857338	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND6	221336	broad.mit.edu	37	6	56857338	56857338	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC7	79444	broad.mit.edu	37	20	61867807	61867807	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC7	79444	broad.mit.edu	37	20	61867807	61867807	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	113002297	113002297	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOC	91653	broad.mit.edu	37	3	113002297	113002297	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65871782	65871782	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65871782	65871782	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50388360	50388360	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50388360	50388360	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59861830	59861830	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRIP1	83990	broad.mit.edu	37	17	59861830	59861830	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG4	54766	broad.mit.edu	37	11	111369271	111369271	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTG4	54766	broad.mit.edu	37	11	111369271	111369271	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5788306	5788306	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf18	54906	broad.mit.edu	37	10	5788306	5788306	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf28	27291	broad.mit.edu	37	10	99969246	99969246	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf28	27291	broad.mit.edu	37	10	99969246	99969246	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf87	388272	broad.mit.edu	37	16	46865169	46865169	+	5'Flank	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf87	388272	broad.mit.edu	37	16	46865169	46865169	+	5'Flank	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13387596	13387596	+	5'UTR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf1	753	broad.mit.edu	37	18	13387596	13387596	+	5'UTR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30498451	30498451	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30498451	30498451	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51768813	51768813	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769221	51769221	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51768813	51768813	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf75	284369	broad.mit.edu	37	19	51769221	51769221	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170967188	170967188	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170967188	170967188	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182925010	182925010	+	5'Flank	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf14	81626	broad.mit.edu	37	1	182925010	182925010	+	5'Flank	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf186	440712	broad.mit.edu	37	1	206239199	206239199	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf38	9473	broad.mit.edu	37	1	28202990	28202990	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf38	9473	broad.mit.edu	37	1	28202990	28202990	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430747	61430747	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430850	61430850	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430747	61430747	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf20	55257	broad.mit.edu	37	20	61430850	61430850	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20340915	20340915	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207297621	207297621	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4BPA	722	broad.mit.edu	37	1	207297621	207297621	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf45	136263	broad.mit.edu	37	7	129853460	129853460	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf45	136263	broad.mit.edu	37	7	129853460	129853460	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf71	169693	broad.mit.edu	37	9	71152351	71152351	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf71	169693	broad.mit.edu	37	9	71152351	71152351	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58235360	58235360	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA4	762	broad.mit.edu	37	17	58235360	58235360	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140809117	140809117	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140809117	140809117	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40054017	40054017	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1I	8911	broad.mit.edu	37	22	40054017	40054017	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54420819	54420819	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54420819	54420819	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18795447	18795447	+	Missense_Mutation	SNP	G	C	C	rs149253719	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18795465	18795465	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18795447	18795447	+	Missense_Mutation	SNP	G	C	C	rs149253719	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB2	783	broad.mit.edu	37	10	18795465	18795465	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM1	23705	broad.mit.edu	37	11	115049441	115049441	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM1	23705	broad.mit.edu	37	11	115049441	115049441	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159170717	159170717	+	3'UTR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159170717	159170717	+	3'UTR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122054168	122054168	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADPS2	93664	broad.mit.edu	37	7	122054168	122054168	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14989403	14989403	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCA	796	broad.mit.edu	37	11	14989403	14989403	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54115229	54115229	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCOCO1	57658	broad.mit.edu	37	12	54115229	54115229	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALR3	125972	broad.mit.edu	37	19	16593223	16593223	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALR3	125972	broad.mit.edu	37	19	16593223	16593223	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40942730	40942730	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC5	57082	broad.mit.edu	37	15	40942730	40942730	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55027049	55027050	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASS4	57091	broad.mit.edu	37	20	55027049	55027050	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219890792	219890792	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219890792	219890792	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111296694	111296694	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111296694	111296694	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCS	9973	broad.mit.edu	37	11	66372806	66372806	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCS	9973	broad.mit.edu	37	11	66372806	66372806	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152851	158152851	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1D	912	broad.mit.edu	37	1	158152851	158152851	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325708	158325708	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158325708	158325708	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPG	55561	broad.mit.edu	37	11	64602820	64602820	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPG	55561	broad.mit.edu	37	11	64602820	64602820	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7L	55536	broad.mit.edu	37	7	21948230	21948230	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCA7L	55536	broad.mit.edu	37	7	21948230	21948230	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537674	24537674	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24537674	24537674	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975358	21975358	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21975358	21975358	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	21065370	21065370	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDKAL1	54901	broad.mit.edu	37	6	21065370	21065370	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEBPD	1052	broad.mit.edu	37	8	48650524	48650524	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEBPD	1052	broad.mit.edu	37	8	48650524	48650524	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17690179	17690179	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR1	51816	broad.mit.edu	37	22	17690179	17690179	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34850743	34850743	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELF4	56853	broad.mit.edu	37	18	34850743	34850743	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13067989	13067989	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13087217	13087217	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13067989	13067989	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP192	55125	broad.mit.edu	37	18	13087217	13087217	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50833510	50833510	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50833510	50833510	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53191487	53191487	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD9	80205	broad.mit.edu	37	16	53191487	53191487	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133438086	133438086	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHFR	55743	broad.mit.edu	37	12	133438086	133438086	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143043748	143043748	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143043748	143043748	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN20	49861	broad.mit.edu	37	6	155597138	155597138	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN20	49861	broad.mit.edu	37	6	155597138	155597138	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73245707	73245707	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN4	1364	broad.mit.edu	37	7	73245707	73245707	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122763323	122763323	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP1	6249	broad.mit.edu	37	12	122763323	122763323	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155237843	155237843	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2	1196	broad.mit.edu	37	1	155237843	155237843	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK3	1198	broad.mit.edu	37	15	74917167	74917167	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK3	1198	broad.mit.edu	37	15	74917167	74917167	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMIP	80790	broad.mit.edu	37	16	81694618	81694618	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMIP	80790	broad.mit.edu	37	16	81694618	81694618	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21670371	21670371	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNKSR2	22866	broad.mit.edu	37	X	21670371	21670371	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74413830	74413830	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN3	5067	broad.mit.edu	37	3	74413830	74413830	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997239	146997239	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146997239	146997239	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103467449	103467449	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103467449	103467449	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121209992	121209992	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121209992	121209992	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139608945	139608945	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139608945	139608945	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7480482	7480482	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL28A1	340267	broad.mit.edu	37	7	7480482	7480482	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130159755	130159755	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130159755	130159755	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110813626	110813626	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110864792	110864792	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110813626	110813626	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238234070	238234070	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238261228	238261228	+	Splice_Site	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238234070	238234070	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238261228	238261228	+	Splice_Site	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61460173	61460173	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61460173	61460173	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ4	51117	broad.mit.edu	37	9	131088030	131088031	+	Intron	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COQ4	51117	broad.mit.edu	37	9	131088030	131088031	+	Intron	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4408565	4408565	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO7	79585	broad.mit.edu	37	16	4408565	4408565	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX19	90639	broad.mit.edu	37	7	1012907	1012907	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX19	90639	broad.mit.edu	37	7	1012907	1012907	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129916550	129916550	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA2	1358	broad.mit.edu	37	7	129916550	129916550	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145622834	145622834	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF1	29894	broad.mit.edu	37	8	145622834	145622834	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207870916	207870916	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1L	1379	broad.mit.edu	37	1	207870916	207870916	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207758146	207758146	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGS	1427	broad.mit.edu	37	3	186257351	186257351	+	Silent	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGS	1427	broad.mit.edu	37	3	186257351	186257351	+	Silent	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37325396	37325396	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37333578	37333578	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37325396	37325396	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSF2RB	1439	broad.mit.edu	37	22	37333578	37333578	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113240830	113240830	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G3	1456	broad.mit.edu	37	5	122909090	122909090	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSNK1G3	1456	broad.mit.edu	37	5	122909090	122909090	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68031019	68031019	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSPP1	79848	broad.mit.edu	37	8	68031019	68031019	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19997690	19997690	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE1	64693	broad.mit.edu	37	18	19997690	19997690	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39782639	39782639	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39782639	39782639	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57564492	57564492	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57564492	57564492	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49034431	49034431	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	49034431	49034431	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CR1	1524	broad.mit.edu	37	3	39307362	39307362	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CX3CR1	1524	broad.mit.edu	37	3	39307362	39307362	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35974306	35974306	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35974306	35974306	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf26	51260	broad.mit.edu	37	X	75396788	75396788	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf26	51260	broad.mit.edu	37	X	75396788	75396788	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYC1	1537	broad.mit.edu	37	8	145151255	145151255	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYC1	1537	broad.mit.edu	37	8	145151255	145151255	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996605	143996605	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996605	143996605	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99311200	99311200	+	Intron	SNP	G	A	A	rs45585039		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A7	1551	broad.mit.edu	37	7	99311200	99311200	+	Intron	SNP	G	A	A	rs45585039		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39383196	39383196	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39383196	39383196	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85415499	85415499	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACH2	117154	broad.mit.edu	37	X	85415499	85415499	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF17	80067	broad.mit.edu	37	2	172314473	172314473	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF17	80067	broad.mit.edu	37	2	172314473	172314473	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31329334	31329334	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCDC1	341019	broad.mit.edu	37	11	31329334	31329334	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCPS	28960	broad.mit.edu	37	11	126215396	126215396	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCPS	28960	broad.mit.edu	37	11	126215396	126215396	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30859822	30859822	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30866587	30866587	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30859822	30859822	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDR1	780	broad.mit.edu	37	6	30866587	30866587	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX56	54606	broad.mit.edu	37	7	44608667	44608667	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX56	54606	broad.mit.edu	37	7	44608667	44608667	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140273726	140273726	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140273726	140273726	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB59	494513	broad.mit.edu	37	2	179320856	179320856	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DFNB59	494513	broad.mit.edu	37	2	179320856	179320856	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR6L	85359	broad.mit.edu	37	22	20307370	20307371	+	Intron	DNP	TC	AA	AA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR6L	85359	broad.mit.edu	37	22	20307370	20307371	+	Intron	DNP	TC	AA	AA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50112015	50112015	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50112015	50112015	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGUOK	1716	broad.mit.edu	37	2	74177857	74177857	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060507	35060507	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35071266	35071266	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060507	35060507	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX2	1746	broad.mit.edu	37	2	172966194	172966194	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX2	1746	broad.mit.edu	37	2	172966194	172966194	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX5	1749	broad.mit.edu	37	7	96650227	96650227	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX5	1749	broad.mit.edu	37	7	96650227	96650227	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32663166	32663166	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32663166	32663166	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118501007	118501007	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118501007	118501007	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70202766	70202766	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNA2	1763	broad.mit.edu	37	10	70202766	70202766	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7707808	7707808	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7707808	7707808	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996905	20996905	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21133528	21133528	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20996905	20996905	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21133528	21133528	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13807619	13807619	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB9	4189	broad.mit.edu	37	7	108213680	108213680	+	Silent	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB9	4189	broad.mit.edu	37	7	108213680	108213680	+	Silent	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC21	134218	broad.mit.edu	37	5	34937468	34937468	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC21	134218	broad.mit.edu	37	5	34937468	34937468	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58183597	58183597	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE1L3	1776	broad.mit.edu	37	3	58183597	58183597	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2	1777	broad.mit.edu	37	19	12986926	12986926	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2	1777	broad.mit.edu	37	19	12986926	12986926	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6520131	6520131	+	Missense_Mutation	SNP	G	T	T	rs142166265		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNHD1	144132	broad.mit.edu	37	11	6520131	6520131	+	Missense_Mutation	SNP	G	T	T	rs142166265		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98078206	98078206	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98078206	98078206	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37623551	37623551	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37623695	37623695	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37623551	37623551	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOPEY2	9980	broad.mit.edu	37	21	37623695	37623695	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113283211	113283211	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113283211	113283211	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100505379	100505379	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100505379	100505379	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574414	28574414	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574418	28574418	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574425	28574425	+	Intron	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574414	28574414	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574418	28574418	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC3	1825	broad.mit.edu	37	18	28574425	28574425	+	Intron	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30436163	30436163	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30436163	30436163	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102508450	102508450	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1H1	1778	broad.mit.edu	37	14	102508450	102508450	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96241397	96241397	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96241397	96241397	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F5	1875	broad.mit.edu	37	8	86125862	86125862	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19255840	19255840	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F8	79733	broad.mit.edu	37	11	19255840	19255840	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM1	9695	broad.mit.edu	37	3	5247048	5247048	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57876513	57876513	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDN3	1908	broad.mit.edu	37	20	57876513	57876513	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38458490	38458490	+	Missense_Mutation	SNP	C	A	A	rs139285515	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38458490	38458490	+	Missense_Mutation	SNP	C	A	A	rs139285515	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHF	26298	broad.mit.edu	37	11	34668258	34668258	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EHF	26298	broad.mit.edu	37	11	34668258	34668258	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599684	109599684	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3IP1	442720	broad.mit.edu	37	7	109599684	109599684	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73477880	73477880	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73477880	73477880	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14743801	14743801	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14743801	14743801	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMX2	2018	broad.mit.edu	37	10	119303313	119303313	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMX2	2018	broad.mit.edu	37	10	119303313	119303313	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	674401	674401	+	Silent	SNP	G	T	T	rs137865368	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOSF1	55556	broad.mit.edu	37	18	674401	674401	+	Silent	SNP	G	T	T	rs137865368	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77709206	77709206	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP7	339221	broad.mit.edu	37	17	77709206	77709206	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD8	377841	broad.mit.edu	37	9	140331211	140331211	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD8	377841	broad.mit.edu	37	9	140331211	140331211	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111576395	111576395	+	Intron	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4A	64097	broad.mit.edu	37	5	111576395	111576395	+	Intron	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93974451	93974451	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	93974451	93974451	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8	2059	broad.mit.edu	37	12	15793840	15793840	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS8	2059	broad.mit.edu	37	12	15793840	15793840	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212495101	212495101	+	Intron	SNP	T	A	A	rs146865683		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212495101	212495101	+	Intron	SNP	T	A	A	rs146865683		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14029250	14029250	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14029250	14029250	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53673324	53673324	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESPL1	9700	broad.mit.edu	37	12	53673324	53673324	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76965136	76965136	+	Intron	SNP	G	A	A	rs141650196	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRB	2103	broad.mit.edu	37	14	76965136	76965136	+	Intron	SNP	G	A	A	rs141650196	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133602295	133602295	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC4	60412	broad.mit.edu	37	7	133602295	133602295	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72156924	72156924	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72156924	72156924	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6196057	6196057	+	Silent	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6196057	6196057	+	Silent	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP9	646480	broad.mit.edu	37	8	82373577	82373577	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP9	646480	broad.mit.edu	37	8	82373577	82373577	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM166B	730112	broad.mit.edu	37	9	35563228	35563228	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM166B	730112	broad.mit.edu	37	9	35563228	35563228	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93386362	93386362	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM172A	83989	broad.mit.edu	37	5	93386362	93386362	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM183A	440585	broad.mit.edu	37	1	43616395	43616395	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM183A	440585	broad.mit.edu	37	1	43616395	43616395	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A2	9413	broad.mit.edu	37	9	71998479	71998479	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM189A2	9413	broad.mit.edu	37	9	71998479	71998479	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A3	284467	broad.mit.edu	37	1	113269262	113269262	+	Nonstop_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A3	284467	broad.mit.edu	37	1	113269262	113269262	+	Nonstop_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129125678	129125678	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM40B	57464	broad.mit.edu	37	7	129125678	129125678	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM57B	83723	broad.mit.edu	37	16	30041831	30041831	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM57B	83723	broad.mit.edu	37	16	30041831	30041831	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067324	190067324	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067324	190067324	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71E1	112703	broad.mit.edu	37	19	50979147	50979147	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71E1	112703	broad.mit.edu	37	19	50979147	50979147	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A5	727905	broad.mit.edu	37	9	65508200	65508200	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A5	727905	broad.mit.edu	37	9	65508200	65508200	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSA	2193	broad.mit.edu	37	19	13033740	13033740	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSA	2193	broad.mit.edu	37	19	13033740	13033740	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92100105	92100105	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92100105	92100105	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126372404	126372404	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126372404	126372404	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45958668	45958668	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45958668	45958668	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127713551	127713551	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127713567	127713567	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127713551	127713551	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127713567	127713567	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8211048	8211048	+	Silent	SNP	C	A	A	rs144757153		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8211048	8211048	+	Silent	SNP	C	A	A	rs144757153		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL13	222235	broad.mit.edu	37	7	102572338	102572338	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL13	222235	broad.mit.edu	37	7	102572338	102572338	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO17	115290	broad.mit.edu	37	19	39433312	39433312	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO17	115290	broad.mit.edu	37	19	39433312	39433312	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO7	25793	broad.mit.edu	37	22	32883842	32883842	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO7	25793	broad.mit.edu	37	22	32883842	32883842	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER2	2208	broad.mit.edu	37	19	7754258	7754258	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER2	2208	broad.mit.edu	37	19	7754258	7754258	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40368642	40368642	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40368642	40368642	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124992922	124992922	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	124992922	124992922	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328507	152328507	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152328507	152328507	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279834	152279834	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286323	152286323	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152279834	152279834	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286323	152286323	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89103870	89103871	+	Intron	INS	-	T	T	rs140201706		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89103870	89103871	+	Intron	INS	-	T	T	rs140201706		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142451731	142451731	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ43860	389690	broad.mit.edu	37	8	142451731	142451731	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50050829	50050829	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMNL3	91010	broad.mit.edu	37	12	50050829	50050829	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159668055	159668055	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC1	84624	broad.mit.edu	37	6	159668055	159668055	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109273273	109273273	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC7	163479	broad.mit.edu	37	1	109273273	109273273	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4794844	4794844	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4794844	4794844	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14846066	14846066	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14846066	14846066	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT8	2530	broad.mit.edu	37	14	66209192	66209192	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT8	2530	broad.mit.edu	37	14	66209192	66209192	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD3	5349	broad.mit.edu	37	19	35614273	35614274	+	Intron	DEL	TG	-	-	rs113577293	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46014653	46014653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYCO1	79443	broad.mit.edu	37	3	46014653	46014653	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161317997	161317997	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161317997	161317997	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336851	151336851	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA3	2556	broad.mit.edu	37	X	151336851	151336851	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS8	2622	broad.mit.edu	37	16	90104007	90104007	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS8	2622	broad.mit.edu	37	16	90104007	90104007	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153784365	153784365	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATAD2B	57459	broad.mit.edu	37	1	153784365	153784365	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAS	2631	broad.mit.edu	37	7	56049250	56049250	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAS	2631	broad.mit.edu	37	7	56049250	56049250	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120567338	120567338	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120567338	120567338	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48414558	48414558	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48414558	48414558	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFER	2671	broad.mit.edu	37	16	2035892	2035892	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFER	2671	broad.mit.edu	37	16	2035892	2035892	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1	2672	broad.mit.edu	37	1	92941768	92941768	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFI1	2672	broad.mit.edu	37	1	92941768	92941768	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP1	170575	broad.mit.edu	37	7	150417162	150417162	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP1	170575	broad.mit.edu	37	7	150417162	150417162	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP7	168537	broad.mit.edu	37	7	150217054	150217054	+	5'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP7	168537	broad.mit.edu	37	7	150217054	150217054	+	5'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCCI1	113263	broad.mit.edu	37	7	8110750	8110750	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCCI1	113263	broad.mit.edu	37	7	8110750	8110750	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6588676	6588676	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6588676	6588676	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151229542	151229542	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA1	2741	broad.mit.edu	37	5	151229542	151229542	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB5	10681	broad.mit.edu	37	15	52427625	52427625	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB5	10681	broad.mit.edu	37	15	52427625	52427625	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA1	10007	broad.mit.edu	37	5	141387389	141387389	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNPDA1	10007	broad.mit.edu	37	5	141387389	141387389	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR108	56927	broad.mit.edu	37	19	6731116	6731116	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR108	56927	broad.mit.edu	37	19	6731116	6731116	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25885784	25885784	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR158	57512	broad.mit.edu	37	10	25885784	25885784	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR35	2859	broad.mit.edu	37	2	241569993	241569993	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR35	2859	broad.mit.edu	37	2	241569993	241569993	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720434	146720434	+	Silent	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM1	2911	broad.mit.edu	37	6	146720434	146720434	+	Silent	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110210771	110210771	+	Intron	SNP	G	T	T	rs140199111		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110210771	110210771	+	Intron	SNP	G	T	T	rs140199111		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM5	2949	broad.mit.edu	37	1	110257469	110257469	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM5	2949	broad.mit.edu	37	1	110257469	110257469	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H3	2967	broad.mit.edu	37	12	124132464	124132464	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF2H3	2967	broad.mit.edu	37	12	124132464	124132464	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122641478	122641478	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAS2	3037	broad.mit.edu	37	8	122641478	122641478	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	239974838	239974838	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	239988418	239988418	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	239974838	239974838	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC4	9759	broad.mit.edu	37	2	239988418	239988418	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18988712	18988712	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18988712	18988712	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242175999	242175999	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDLBP	3069	broad.mit.edu	37	2	242175999	242175999	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236761272	236761272	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236761272	236761272	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45473082	45473082	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECTD3	79654	broad.mit.edu	37	1	45473082	45473082	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43508707	43508707	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43508707	43508707	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92825065	92825065	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92825065	92825065	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72640157	72640157	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEXA	3073	broad.mit.edu	37	15	72640157	72640157	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEYL	26508	broad.mit.edu	37	1	40098421	40098421	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEYL	26508	broad.mit.edu	37	1	40098421	40098421	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKR1	284459	broad.mit.edu	37	19	37854368	37854368	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HKR1	284459	broad.mit.edu	37	19	37854368	37854368	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162896811	162896811	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMMR	3161	broad.mit.edu	37	5	162896811	162896811	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPM	4670	broad.mit.edu	37	19	8550609	8550609	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPM	4670	broad.mit.edu	37	19	8550609	8550609	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41782090	41782090	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41782090	41782090	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46690530	46690530	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46690530	46690530	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148859241	148859241	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148859241	148859241	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152190973	152190973	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSN2	378465	broad.mit.edu	37	12	977030	977030	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSN2	378465	broad.mit.edu	37	12	977030	977030	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22183716	22183716	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22183716	22183716	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92616928	92616928	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR7	3363	broad.mit.edu	37	10	92616928	92616928	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70843883	70843883	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	70843883	70843883	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209103826	209103826	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209104696	209104696	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209116370	209116370	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209103826	209103826	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209104696	209104696	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDH1	3417	broad.mit.edu	37	2	209116370	209116370	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDO2	169355	broad.mit.edu	37	8	39862923	39862923	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IDO2	169355	broad.mit.edu	37	8	39862923	39862923	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT46	56912	broad.mit.edu	37	11	118428594	118428594	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT46	56912	broad.mit.edu	37	11	118428594	118428594	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118647349	118647349	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118647349	118647349	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160063849	160063849	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF8	93185	broad.mit.edu	37	1	160063849	160063849	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133801914	133801914	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133801914	133801914	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27459937	27459937	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL21R	50615	broad.mit.edu	37	16	27459937	27459937	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31	386653	broad.mit.edu	37	12	122657105	122657105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL31	386653	broad.mit.edu	37	12	122657105	122657105	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155234299	155234299	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155234299	155234299	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76713530	76713530	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100976360	100976360	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG2	50939	broad.mit.edu	37	3	100976360	100976360	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61912273	61912273	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INCENP	3619	broad.mit.edu	37	11	61912273	61912273	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105177174	105177174	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INF2	64423	broad.mit.edu	37	14	105177174	105177174	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	59967149	59967149	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS2	57508	broad.mit.edu	37	17	59967149	59967149	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77635773	77635773	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS4	92105	broad.mit.edu	37	11	77635773	77635773	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS5	80789	broad.mit.edu	37	11	62416483	62416483	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTS5	80789	broad.mit.edu	37	11	62416483	62416483	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO4	79711	broad.mit.edu	37	14	24655522	24655522	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237308223	237308223	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCA1	79781	broad.mit.edu	37	2	237308223	237308223	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15573153	15573153	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15639326	15639326	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15573153	15573153	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15639326	15639326	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422267	31422267	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31422267	31422267	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31368548	31368548	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAX	3687	broad.mit.edu	37	16	31368548	31368548	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46330175	46330175	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB2	3689	broad.mit.edu	37	21	46330175	46330175	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPK1	3705	broad.mit.edu	37	14	93482981	93482981	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPK1	3705	broad.mit.edu	37	14	93482981	93482981	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26835477	26835477	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26839489	26839489	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26835477	26835477	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138620	42138620	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD7-PLA2G4B	8681	broad.mit.edu	37	15	42138620	42138620	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75149448	75149448	+	3'UTR	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JPH1	56704	broad.mit.edu	37	8	75149448	75149448	+	3'UTR	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123871906	123871906	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	123871906	123871906	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK2	25959	broad.mit.edu	37	19	11303645	11303645	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KANK2	25959	broad.mit.edu	37	19	11303645	11303645	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021551	5021551	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA1	3736	broad.mit.edu	37	12	5021551	5021551	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444758	75444758	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC2	3747	broad.mit.edu	37	12	75444758	75444758	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK5	8645	broad.mit.edu	37	6	39196902	39196902	+	5'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK5	8645	broad.mit.edu	37	6	39196902	39196902	+	5'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD13	253980	broad.mit.edu	37	16	29934554	29934554	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD13	253980	broad.mit.edu	37	16	29934554	29934554	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650848	142650848	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KEL	3792	broad.mit.edu	37	7	142650848	142650848	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48309124	48309124	+	Silent	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48309124	48309124	+	Silent	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73495347	73495347	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0195	9772	broad.mit.edu	37	17	73495347	73495347	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1191	57179	broad.mit.edu	37	5	175774658	175774658	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1191	57179	broad.mit.edu	37	5	175774658	175774658	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94048570	94048570	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94048570	94048570	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1895158	1895158	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1751	85452	broad.mit.edu	37	1	1895158	1895158	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8891840	8891840	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIDINS220	57498	broad.mit.edu	37	2	8891840	8891840	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57972080	57972080	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57972080	57972080	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170003437	170003437	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170003437	170003437	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC10	23008	broad.mit.edu	37	7	129765721	129765721	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC10	23008	broad.mit.edu	37	7	129765721	129765721	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC4	54758	broad.mit.edu	37	16	87743082	87743082	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC4	54758	broad.mit.edu	37	16	87743082	87743082	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70456453	70456453	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70456453	70456453	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL21	9903	broad.mit.edu	37	1	6655584	6655584	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL21	9903	broad.mit.edu	37	1	6655584	6655584	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51518935	51518935	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK10	5655	broad.mit.edu	37	19	51518935	51518935	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51379887	51379887	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK2	3817	broad.mit.edu	37	19	51379887	51379887	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRD1	3824	broad.mit.edu	37	12	10467407	10467407	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLRD1	3824	broad.mit.edu	37	12	10467407	10467407	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	A	A	rs121913529		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38922678	38922678	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT26	353288	broad.mit.edu	37	17	38922678	38922678	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39633867	39633867	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39633867	39633867	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52843583	52843583	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6B	3854	broad.mit.edu	37	12	52843583	52843583	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT86	3892	broad.mit.edu	37	12	52646173	52646173	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153132495	153132495	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L1CAM	3897	broad.mit.edu	37	X	153132495	153132495	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201355939	201355939	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAD1	3898	broad.mit.edu	37	1	201355939	201355939	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112475991	112475991	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112475991	112475991	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209797143	209797143	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209797143	209797143	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30748669	30748669	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCLAT1	253558	broad.mit.edu	37	2	30748669	30748669	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156695248	156695248	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEKR1	389170	broad.mit.edu	37	3	156695248	156695248	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD3	23592	broad.mit.edu	37	12	65609842	65609842	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD3	23592	broad.mit.edu	37	12	65609842	65609842	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEP	3952	broad.mit.edu	37	7	127894471	127894471	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEP	3952	broad.mit.edu	37	7	127894471	127894471	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93199091	93199091	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGMN	5641	broad.mit.edu	37	14	93199091	93199091	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38496731	38496731	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38496731	38496731	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779875	54779876	+	Intron	DNP	GG	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54780053	54780053	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54779875	54779876	+	Intron	DNP	GG	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54780053	54780053	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70490434	70490434	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBRD1	55788	broad.mit.edu	37	6	70490434	70490434	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19878725	19878725	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100101938	100101938	broad.mit.edu	37	13	19878725	19878725	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135188390	135188390	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135188390	135188390	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC168474	168474	broad.mit.edu	37	7	64312984	64312984	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7191090	7191090	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7191090	7191090	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440563	440563	broad.mit.edu	37	1	13183710	13183710	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440563	440563	broad.mit.edu	37	1	13183710	13183710	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22533682	22533682	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23145724	23145724	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23237608	23237608	+	RNA	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23145724	23145724	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23237608	23237608	+	RNA	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456564	82456564	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456564	82456564	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62449563	62449563	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62453151	62453152	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62778453	62778453	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62449563	62449563	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62453151	62453152	+	Frame_Shift_Del	DEL	TC	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62778453	62778453	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11964655	11964655	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPIN1	23175	broad.mit.edu	37	2	11964655	11964655	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR1	54886	broad.mit.edu	37	9	104071741	104071741	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR1	54886	broad.mit.edu	37	9	104071741	104071741	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142238044	142238044	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142238044	142238044	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53726386	53726386	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP8	7804	broad.mit.edu	37	1	53726386	53726386	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371671	76371671	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371671	76371671	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A4	55073	broad.mit.edu	37	17	43587497	43587497	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101464888	101464888	+	Silent	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101464888	101464888	+	Silent	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529975	80529975	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM1	347730	broad.mit.edu	37	2	80529975	80529975	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP3	4054	broad.mit.edu	37	11	65319380	65319380	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP3	4054	broad.mit.edu	37	11	65319380	65319380	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD6	130574	broad.mit.edu	37	2	150325382	150325382	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYPD6	130574	broad.mit.edu	37	2	150325382	150325382	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39852909	39852909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39852909	39852909	+	Nonsense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145161489	145161489	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145161786	145161786	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145161489	145161489	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAF1	84232	broad.mit.edu	37	8	145161786	145161786	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78116160	78116160	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI2	9863	broad.mit.edu	37	7	78116160	78116160	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65269682	65269682	+	RNA	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MALAT1	378938	broad.mit.edu	37	11	65269682	65269682	+	RNA	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91455583	91455583	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A2	4122	broad.mit.edu	37	15	91455583	91455583	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67920253	67920253	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67920253	67920253	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210560407	210560408	+	Frame_Shift_Ins	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210560407	210560408	+	Frame_Shift_Ins	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136913250	136913250	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K5	4217	broad.mit.edu	37	6	136913250	136913250	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160623733	160623733	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH7	64844	broad.mit.edu	37	2	160623733	160623733	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN4	8785	broad.mit.edu	37	20	43929581	43929581	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN4	8785	broad.mit.edu	37	20	43929581	43929581	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD3L5	284428	broad.mit.edu	37	19	7032272	7032272	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD3L5	284428	broad.mit.edu	37	19	7032272	7032272	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL1	4154	broad.mit.edu	37	3	152176040	152176040	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBNL1	4154	broad.mit.edu	37	3	152176040	152176040	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47351411	47351411	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47669838	47669838	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47351411	47351411	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47669838	47669838	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207621721	207621721	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDH1B	130752	broad.mit.edu	37	2	207621721	207621721	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED16	10025	broad.mit.edu	37	19	878523	878523	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED29	55588	broad.mit.edu	37	19	39888162	39888162	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED29	55588	broad.mit.edu	37	19	39888162	39888162	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42867243	42867243	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF8	1954	broad.mit.edu	37	19	42867243	42867243	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEMO1	51072	broad.mit.edu	37	2	32116847	32116847	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFGE8	4240	broad.mit.edu	37	15	89450563	89450563	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFGE8	4240	broad.mit.edu	37	15	89450563	89450563	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141738391	141738391	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141796297	141796297	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141738391	141738391	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141796297	141796297	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB1	57534	broad.mit.edu	37	18	19345792	19345792	+	Nonsense_Mutation	SNP	C	T	T	rs151095403		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB1	57534	broad.mit.edu	37	18	19345792	19345792	+	Nonsense_Mutation	SNP	C	T	T	rs151095403		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301725	18301725	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18463458	18463458	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18301725	18301725	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICAL3	57553	broad.mit.edu	37	22	18463458	18463458	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118380757	118380758	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL	4297	broad.mit.edu	37	11	118380757	118380758	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAB	326625	broad.mit.edu	37	12	109998814	109998814	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMAB	326625	broad.mit.edu	37	12	109998814	109998814	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2527973	2527973	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMEL1	79258	broad.mit.edu	37	1	2527973	2527973	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13223519	13223519	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPDZ	8777	broad.mit.edu	37	9	13223519	13223519	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60152491	60152491	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60184410	60184410	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60152491	60152491	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A14	84689	broad.mit.edu	37	11	60184410	60184410	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60231728	60231728	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A1	931	broad.mit.edu	37	11	60231728	60231728	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48033436	48033436	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH6	2956	broad.mit.edu	37	2	48033436	48033436	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL2	55167	broad.mit.edu	37	3	135870109	135870109	+	Missense_Mutation	SNP	G	T	T	rs138536154	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSL2	55167	broad.mit.edu	37	3	135870109	135870109	+	Missense_Mutation	SNP	G	T	T	rs138536154	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1	4485	broad.mit.edu	37	3	49722464	49722464	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1A	4489	broad.mit.edu	37	16	56669610	56669610	+	5'Flank	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MT1A	4489	broad.mit.edu	37	16	56669610	56669610	+	5'Flank	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTA3	57504	broad.mit.edu	37	2	42936104	42936104	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151281382	151281382	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151281382	151281382	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1	4522	broad.mit.edu	37	14	64855014	64855014	+	5'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1	4522	broad.mit.edu	37	14	64855014	64855014	+	5'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11204846	11204846	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTOR	2475	broad.mit.edu	37	1	11204846	11204846	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30658022	30658022	+	5'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30658022	30658022	+	5'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124653606	124653606	+	5'Flank	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC13	56667	broad.mit.edu	37	3	124653606	124653606	+	5'Flank	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9000076	9000076	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048993	9048993	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9000076	9000076	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9048993	9048993	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683794	100683794	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100683794	100683794	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71347156	71347156	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC7	4589	broad.mit.edu	37	4	71347156	71347156	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113524456	113524456	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUSK	4593	broad.mit.edu	37	9	113524456	113524456	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPHL	343263	broad.mit.edu	37	1	109840136	109840136	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPHL	343263	broad.mit.edu	37	1	109840136	109840136	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15829337	15829337	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH11	4629	broad.mit.edu	37	16	15829337	15829337	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10267796	10267796	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10267796	10267796	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33578063	33578063	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7B	57644	broad.mit.edu	37	20	33578063	33578063	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46761018	46761018	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46761018	46761018	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123458825	123458825	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123458825	123458825	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109699269	109699269	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109699269	109699269	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109845649	109845649	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO1H	283446	broad.mit.edu	37	12	109845649	109845649	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76572390	76572390	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76572390	76572390	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666716	12666716	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOCD	93649	broad.mit.edu	37	17	12666716	12666716	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1893159	1893159	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1913923	1913923	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1893159	1893159	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40104287	40104287	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
N4BP2	55728	broad.mit.edu	37	4	40104287	40104287	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARF	26502	broad.mit.edu	37	17	80436742	80436742	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARF	26502	broad.mit.edu	37	17	80436742	80436742	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15330452	15330452	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15496520	15496520	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15608666	15608666	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15330452	15330452	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15496520	15496520	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15608666	15608666	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148012507	148012507	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148012507	148012507	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41345097	41345097	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBR1	4077	broad.mit.edu	37	17	41345097	41345097	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102884221	102884221	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102884221	102884221	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113076939	113076939	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	113076939	113076939	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6623502	6623502	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6623502	6623502	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21115344	21115344	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21115344	21115344	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29881765	29881765	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29881765	29881765	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK6	10783	broad.mit.edu	37	9	127074763	127074763	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK6	10783	broad.mit.edu	37	9	127074763	127074763	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46128597	46128597	+	Silent	SNP	C	T	T	rs141933946	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L1	4779	broad.mit.edu	37	17	46128597	46128597	+	Silent	SNP	C	T	T	rs141933946	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIF3L1	60491	broad.mit.edu	37	2	201756947	201756947	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIF3L1	60491	broad.mit.edu	37	2	201756947	201756947	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42675154	42675154	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKTR	4820	broad.mit.edu	37	3	42675154	42675154	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981515	7981515	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP10	338322	broad.mit.edu	37	11	7981515	7981515	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7083435	7083435	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7083435	7083435	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55494060	55494060	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP2	55655	broad.mit.edu	37	19	55494060	55494060	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247592928	247592928	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247592928	247592928	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56382140	56382140	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP4	147945	broad.mit.edu	37	19	56382140	56382140	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16339433	16339433	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRIP1	8204	broad.mit.edu	37	21	16339433	16339433	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59511849	59511849	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59511849	59511849	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE4A	54780	broad.mit.edu	37	10	123718650	123718650	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMCE4A	54780	broad.mit.edu	37	10	123718650	123718650	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88669523	88669523	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88669523	88669523	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT9	53343	broad.mit.edu	37	4	88379263	88379263	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT9	53343	broad.mit.edu	37	4	88379263	88379263	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37299057	37299057	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37350358	37350358	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37299057	37299057	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37350358	37350358	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131743636	131743636	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP188	23511	broad.mit.edu	37	9	131743636	131743636	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134073549	134073549	+	Silent	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134073549	134073549	+	Silent	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP50	10762	broad.mit.edu	37	22	45580508	45580508	+	Missense_Mutation	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPR1	26471	broad.mit.edu	37	16	28550162	28550162	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPR1	26471	broad.mit.edu	37	16	28550162	28550162	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62568674	62568674	+	Splice_Site	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62571288	62571288	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62568674	62568674	+	Splice_Site	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62571288	62571288	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101802399	101802400	+	5'Flank	DNP	GG	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF4	55999	broad.mit.edu	37	X	101802399	101802400	+	5'Flank	DNP	GG	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228557766	228557766	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228557766	228557766	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28235701	28235701	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCA2	4948	broad.mit.edu	37	15	28235701	28235701	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103572936	103572936	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF1	4956	broad.mit.edu	37	8	103572936	103572936	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123554295	123554295	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123787580	123787580	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123554295	123554295	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123787580	123787580	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167674283	167674283	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167674283	167674283	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183635159	183635159	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183635159	183635159	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML1	283298	broad.mit.edu	37	11	7530834	7530834	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML1	283298	broad.mit.edu	37	11	7530834	7530834	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203472585	203472585	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203472585	203472585	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H12	440153	broad.mit.edu	37	14	19378063	19378063	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11H12	440153	broad.mit.edu	37	14	19378063	19378063	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248005039	248005039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248005039	248005039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224863	248224863	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L3	391192	broad.mit.edu	37	1	248224863	248224863	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308490	248308490	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308490	248308490	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080209	5080209	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E2	119678	broad.mit.edu	37	11	5080209	5080209	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K3	403277	broad.mit.edu	37	3	98109910	98109910	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K3	403277	broad.mit.edu	37	3	98109910	98109910	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158725166	158725166	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K6	128371	broad.mit.edu	37	1	158725166	158725166	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G2	390882	broad.mit.edu	37	19	9213076	9213076	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7G2	390882	broad.mit.edu	37	19	9213076	9213076	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAI1	84876	broad.mit.edu	37	12	122079355	122079355	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORAI1	84876	broad.mit.edu	37	12	122079355	122079355	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSMR	9180	broad.mit.edu	37	5	38883971	38883971	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSMR	9180	broad.mit.edu	37	5	38883971	38883971	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSTF1	26578	broad.mit.edu	37	9	77742468	77742468	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21698947	21698947	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTOA	146183	broad.mit.edu	37	16	21698947	21698947	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD6A	139562	broad.mit.edu	37	X	69282531	69282531	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD6A	139562	broad.mit.edu	37	X	69282531	69282531	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163378431	163378431	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163378431	163378431	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176671933	176671933	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176671933	176671933	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP10	84875	broad.mit.edu	37	8	145060702	145060702	+	5'Flank	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150828215	150828215	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PASD1	139135	broad.mit.edu	37	X	150828215	150828215	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071514	134071514	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134071514	134071514	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502877	140502877	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB4	56131	broad.mit.edu	37	5	140502877	140502877	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554464	140554464	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140554464	140554464	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA11	56105	broad.mit.edu	37	5	140802147	140802147	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA11	56105	broad.mit.edu	37	5	140802147	140802147	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140720800	140720801	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140720800	140720801	+	Frame_Shift_Ins	INS	-	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140735712	140735712	+	Nonsense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA4	56111	broad.mit.edu	37	5	140735712	140735712	+	Nonsense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140732045	140732045	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB1	56104	broad.mit.edu	37	5	140732045	140732045	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140779378	140779378	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB5	56101	broad.mit.edu	37	5	140779378	140779378	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95764992	95764992	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK1	5122	broad.mit.edu	37	5	95764992	95764992	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78686767	78686767	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK5	5125	broad.mit.edu	37	9	78686767	78686767	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31917643	31917643	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31917643	31917643	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14696038	14696038	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14810541	14810541	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14696038	14696038	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14810541	14810541	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144916339	144916339	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE4DIP	9659	broad.mit.edu	37	1	144916339	144916339	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149240474	149240474	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6A	5145	broad.mit.edu	37	5	149240474	149240474	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54342866	54342866	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	54342866	54342866	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149504257	149504257	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149504257	149504257	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96762444	96762444	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDHA2	5161	broad.mit.edu	37	4	96762444	96762444	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD9	255762	broad.mit.edu	37	16	22009634	22009634	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD9	255762	broad.mit.edu	37	16	22009634	22009634	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN4	29951	broad.mit.edu	37	12	41582588	41582588	+	5'Flank	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49753968	49753968	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49753968	49753968	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28818172	28818172	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHACTR4	65979	broad.mit.edu	37	1	28818172	28818172	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34487550	34487550	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF20	51230	broad.mit.edu	37	20	34487550	34487550	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKG1	5260	broad.mit.edu	37	7	56156501	56156501	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKG1	5260	broad.mit.edu	37	7	56156501	56156501	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP2	23035	broad.mit.edu	37	16	71715483	71715483	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLPP2	23035	broad.mit.edu	37	16	71715483	71715483	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	601474	601474	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	601474	601474	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75757410	75757410	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI15	51050	broad.mit.edu	37	8	75757410	75757410	+	Missense_Mutation	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	517191	517207	+	Intron	DEL	GCAAGATGTGTGTCGTT	-	-	rs7678962	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGG	54872	broad.mit.edu	37	4	517191	517207	+	Intron	DEL	GCAAGATGTGTGTCGTT	-	-	rs7678962	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81241365	81241365	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81241365	81241365	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110431256	110431256	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110523010	110523010	+	Silent	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110431256	110431256	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110523010	110523010	+	Silent	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201293709	201293709	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP1	5317	broad.mit.edu	37	1	201293709	201293709	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAGL1	5325	broad.mit.edu	37	6	144263857	144263857	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAGL1	5325	broad.mit.edu	37	6	144263857	144263857	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8698415	8698415	+	Missense_Mutation	SNP	G	A	A	rs146833633		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8698415	8698415	+	Missense_Mutation	SNP	G	A	A	rs146833633		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949108	198949108	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950297	198950297	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198949108	198949108	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCL1	5334	broad.mit.edu	37	2	198950297	198950297	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18889139	18889139	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCZ1	89869	broad.mit.edu	37	12	18889139	18889139	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145012854	145012854	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	145012854	145012854	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161132763	161132763	+	Intron	SNP	T	C	C	rs113832225		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161152151	161152151	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161132742	161132742	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161132763	161132763	+	Intron	SNP	T	C	C	rs113832225		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLG	5340	broad.mit.edu	37	6	161152151	161152151	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR3	57048	broad.mit.edu	37	17	7296316	7296316	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR3	57048	broad.mit.edu	37	17	7296316	7296316	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72174447	72174447	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72174447	72174447	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74290522	74290522	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PML	5371	broad.mit.edu	37	15	74290522	74290522	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190738322	190738322	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS1	5378	broad.mit.edu	37	2	190738322	190738322	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106763072	106763072	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3B	55703	broad.mit.edu	37	12	106763072	106763072	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLRMT	5442	broad.mit.edu	37	19	630209	630209	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLRMT	5442	broad.mit.edu	37	19	630209	630209	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121	9883	broad.mit.edu	37	7	72399021	72399021	+	Intron	SNP	C	A	A	rs151002333	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121	9883	broad.mit.edu	37	7	72399021	72399021	+	Intron	SNP	C	A	A	rs151002333	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38148759	38148759	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38166353	38166353	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38148759	38148759	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38166353	38166353	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEB	339010	broad.mit.edu	37	15	21071181	21071181	+	Intron	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEB	339010	broad.mit.edu	37	15	21071181	21071181	+	Intron	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19571471	19571471	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76785703	76785703	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76809329	76809329	+	Intron	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76785703	76785703	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76809329	76809329	+	Intron	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27829381	27829381	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIBP1	8496	broad.mit.edu	37	12	27829381	27829381	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37547132	37547132	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37547132	37547132	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3C	55012	broad.mit.edu	37	14	35554835	35554835	+	Silent	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R3C	55012	broad.mit.edu	37	14	35554835	35554835	+	Silent	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPYR1	5540	broad.mit.edu	37	10	47087519	47087519	+	Missense_Mutation	SNP	C	A	A	rs151042454	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPYR1	5540	broad.mit.edu	37	10	47087519	47087519	+	Missense_Mutation	SNP	C	A	A	rs151042454	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB1	5542	broad.mit.edu	37	12	11507028	11507028	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB1	5542	broad.mit.edu	37	12	11507028	11507028	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM10	56980	broad.mit.edu	37	11	129784679	129784679	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIC285	85441	broad.mit.edu	37	20	62190932	62190933	+	Intron	INS	-	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64299225	64299225	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCA	5578	broad.mit.edu	37	17	64299225	64299225	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48701621	48701621	+	Intron	DEL	A	-	-	rs34211555		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179297099	179297099	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKRA	8575	broad.mit.edu	37	2	179297099	179297099	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT2	3275	broad.mit.edu	37	21	48064292	48064292	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT2	3275	broad.mit.edu	37	21	48064292	48064292	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT5	10419	broad.mit.edu	37	14	23391799	23391799	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT5	10419	broad.mit.edu	37	14	23391799	23391799	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95953925	95953925	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM2	150696	broad.mit.edu	37	2	95953925	95953925	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150321586	150321586	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF3	9129	broad.mit.edu	37	1	150321586	150321586	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4032758	4032758	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF4B	8899	broad.mit.edu	37	6	4032758	4032758	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR14	78994	broad.mit.edu	37	16	30667570	30667570	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR14	78994	broad.mit.edu	37	16	30667570	30667570	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458358	142458358	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458358	142458358	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31157117	31157117	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS36	146547	broad.mit.edu	37	16	31157117	31157117	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43698709	43698709	+	Silent	SNP	G	C	C	rs146368793		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43698709	43698709	+	Silent	SNP	G	C	C	rs146368793		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43258444	43258444	+	3'UTR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43258444	43258444	+	3'UTR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15471116	15471116	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSIP1	11168	broad.mit.edu	37	9	15471116	15471116	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136936041	136936041	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTN	5764	broad.mit.edu	37	7	136936041	136936041	+	Frame_Shift_Del	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN9	5780	broad.mit.edu	37	15	75816478	75816478	+	Intron	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128294253	128294253	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128294253	128294253	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71065963	71065963	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105108805	105108805	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105108805	105108805	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52370103	52370103	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52370103	52370103	+	Frame_Shift_Del	DEL	C	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158906615	158906615	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158906615	158906615	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPCT	25797	broad.mit.edu	37	2	37587074	37587074	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QPCT	25797	broad.mit.edu	37	2	37587074	37587074	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29758784	29758784	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29758784	29758784	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB22A	57403	broad.mit.edu	37	20	56886196	56886196	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB22A	57403	broad.mit.edu	37	20	56886196	56886196	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD21	5885	broad.mit.edu	37	8	117861113	117861113	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23B	5887	broad.mit.edu	37	9	110068802	110068802	+	Missense_Mutation	SNP	C	A	A	rs111972101		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD23B	5887	broad.mit.edu	37	9	110068802	110068802	+	Missense_Mutation	SNP	C	A	A	rs111972101		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114766432	114766432	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114766432	114766432	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53598099	53598099	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1CC1	9821	broad.mit.edu	37	8	53598099	53598099	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48947605	48947606	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	48947605	48947606	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35627148	35627148	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL1	5933	broad.mit.edu	37	20	35627148	35627148	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM10	8241	broad.mit.edu	37	X	47028898	47028898	+	Splice_Site	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDBP	7936	broad.mit.edu	37	6	31926270	31926270	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDBP	7936	broad.mit.edu	37	6	31926270	31926270	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254330	79254330	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79254330	79254330	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103206713	103206713	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103206713	103206713	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REST	5978	broad.mit.edu	37	4	57777171	57777171	+	Missense_Mutation	SNP	C	G	G	rs149829250	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REST	5978	broad.mit.edu	37	4	57777171	57777171	+	Missense_Mutation	SNP	C	G	G	rs149829250	byFrequency;by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85577737	85577737	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85577737	85577737	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163039313	163039313	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS4	5999	broad.mit.edu	37	1	163039313	163039313	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74473792	74473792	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBDF2	79651	broad.mit.edu	37	17	74473792	74473792	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156348094	156348094	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156348094	156348094	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104973292	104973292	+	Splice_Site	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104973292	104973292	+	Splice_Site	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE13	440163	broad.mit.edu	37	14	21502073	21502073	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE13	440163	broad.mit.edu	37	14	21502073	21502073	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF121	55298	broad.mit.edu	37	11	71698255	71698255	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF121	55298	broad.mit.edu	37	11	71698255	71698255	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF125	54941	broad.mit.edu	37	18	29648171	29648171	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141868790	141868790	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF150	57484	broad.mit.edu	37	4	141868790	141868790	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124740965	124740965	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124740965	124740965	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10465877	10465877	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10465877	10465877	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21795901	21795901	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1	57096	broad.mit.edu	37	14	21795901	21795901	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166872949	166872949	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166872949	166872949	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67855321	67855321	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTTN	25914	broad.mit.edu	37	18	67855321	67855321	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237789031	237789031	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237837535	237837535	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237789031	237789031	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237837535	237837535	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33955137	33955137	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	33955137	33955137	+	Silent	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4A	23034	broad.mit.edu	37	14	55231189	55231189	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4A	23034	broad.mit.edu	37	14	55231189	55231189	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92730825	92730825	+	Missense_Mutation	SNP	C	A	A	rs149966534		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD9	54809	broad.mit.edu	37	7	92730825	92730825	+	Missense_Mutation	SNP	C	A	A	rs149966534		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128712558	128712558	+	Splice_Site	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP130	79595	broad.mit.edu	37	2	128712558	128712558	+	Splice_Site	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART1	9092	broad.mit.edu	37	11	65743992	65743992	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SART1	9092	broad.mit.edu	37	11	65743992	65743992	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100572478	100572478	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SASS6	163786	broad.mit.edu	37	1	100572478	100572478	+	Silent	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18393372	18393372	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18393372	18393372	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36018346	36018346	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36018346	36018346	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78130561	78130561	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78130561	78130561	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38991610	38991610	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38991610	38991610	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62043558	62043558	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN4A	6329	broad.mit.edu	37	17	62043558	62043558	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144876106	144876106	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCRIB	23513	broad.mit.edu	37	8	144876106	144876106	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC23IP	11196	broad.mit.edu	37	10	121678942	121678942	+	Intron	DEL	T	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13868725	13868725	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13868725	13868725	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101090930	101090930	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SENP7	57337	broad.mit.edu	37	3	101090930	101090930	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT4	5414	broad.mit.edu	37	17	56598437	56598437	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT4	5414	broad.mit.edu	37	17	56598437	56598437	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030054	95030054	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA4	5267	broad.mit.edu	37	14	95030054	95030054	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERTAD4	56256	broad.mit.edu	37	1	210412803	210412803	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERTAD4	56256	broad.mit.edu	37	1	210414899	210414899	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2	6427	broad.mit.edu	37	17	74732124	74732124	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS2	6427	broad.mit.edu	37	17	74732124	74732124	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS7	6432	broad.mit.edu	37	2	38978477	38978477	+	5'UTR	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28884516	28884516	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28884516	28884516	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3A	10045	broad.mit.edu	37	19	6755294	6755294	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D3A	10045	broad.mit.edu	37	19	6755294	6755294	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D5	400745	broad.mit.edu	37	1	21050589	21050589	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2D5	400745	broad.mit.edu	37	1	21050589	21050589	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152065389	152065389	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D19	152503	broad.mit.edu	37	4	152065389	152065389	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105362429	105362429	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3PXD2A	9644	broad.mit.edu	37	10	105362429	105362429	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70507767	70507767	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK2	22941	broad.mit.edu	37	11	70507767	70507767	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK3	85358	broad.mit.edu	37	22	51117091	51117091	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK3	85358	broad.mit.edu	37	22	51117091	51117091	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC2	25759	broad.mit.edu	37	19	440726	440726	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA2	387914	broad.mit.edu	37	13	26620766	26620766	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHISA2	387914	broad.mit.edu	37	13	26620766	26620766	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110760110	110760110	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A16	85413	broad.mit.edu	37	6	110760110	110760110	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62948025	62948025	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A25	387601	broad.mit.edu	37	11	62948025	62948025	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92952923	92952923	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A16	8034	broad.mit.edu	37	10	70243337	70243337	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A16	8034	broad.mit.edu	37	10	70243337	70243337	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103018234	103018234	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A5	375611	broad.mit.edu	37	7	103018234	103018234	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92350327	92350327	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92350327	92350327	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75677102	75677102	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75677102	75677102	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8390292	8390292	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A1	50651	broad.mit.edu	37	1	8390292	8390292	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A2	146802	broad.mit.edu	37	17	19611846	19611846	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC47A2	146802	broad.mit.edu	37	17	19611846	19611846	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28525391	28525391	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A4	6532	broad.mit.edu	37	17	28525391	28525391	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67286441	67286441	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A5	6553	broad.mit.edu	37	16	67286441	67286441	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21471751	21471751	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21471751	21471751	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133669845	133669845	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133669845	133669845	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168222382	168222382	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168222382	168222382	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2047450	2047450	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA2	6595	broad.mit.edu	37	9	2047450	2047450	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127732042	127732046	+	Splice_Site	DEL	CAGCT	-	-	rs113048090		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SND1	27044	broad.mit.edu	37	7	127732042	127732046	+	Splice_Site	DEL	CAGCT	-	-	rs113048090		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25467478	25467478	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-20	100033460	broad.mit.edu	37	15	25467478	25467478	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25325411	25325411	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD116-4	100033416	broad.mit.edu	37	15	25325411	25325411	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPE	6635	broad.mit.edu	37	1	203834119	203834119	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPE	6635	broad.mit.edu	37	1	203834119	203834119	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51617388	51617388	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX31	169166	broad.mit.edu	37	8	101620895	101620895	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	601384	601384	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOLH	6650	broad.mit.edu	37	16	601384	601384	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108337046	108337046	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7728606	7728606	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7728606	7728606	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231157280	231157280	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231157280	231157280	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49079164	49079164	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG9	9043	broad.mit.edu	37	17	49079164	49079164	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35771597	35771597	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35771597	35771597	+	Intron	SNP	A	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220329126	220329126	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220329126	220329126	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234967454	234967454	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPP2	6694	broad.mit.edu	37	2	234967454	234967454	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB2	84727	broad.mit.edu	37	12	6981812	6981812	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPSB2	84727	broad.mit.edu	37	12	6981812	6981812	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158587787	158587787	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158587787	158587787	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A1	6715	broad.mit.edu	37	5	6651869	6651890	+	Intron	DEL	TTAAAACCCAAATCATTTAAGA	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A1	6715	broad.mit.edu	37	5	6651869	6651890	+	Intron	DEL	TTAAAACCCAAATCATTTAAGA	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRR	63826	broad.mit.edu	37	17	2218842	2218842	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRR	63826	broad.mit.edu	37	17	2218842	2218842	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460276	107460276	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL2	84620	broad.mit.edu	37	2	107460276	107460276	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99809101	99809101	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99809101	99809101	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRBP	55342	broad.mit.edu	37	9	125920470	125920470	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRBP	55342	broad.mit.edu	37	9	125920470	125920470	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULF1	23213	broad.mit.edu	37	8	70516969	70516969	+	Intron	DEL	G	-	-	rs149602643		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO1	7341	broad.mit.edu	37	2	203084621	203084621	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMO1	7341	broad.mit.edu	37	2	203084621	203084621	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVEP1	79987	broad.mit.edu	37	9	113220676	113220676	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCE1	93426	broad.mit.edu	37	10	135367822	135367822	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCE1	93426	broad.mit.edu	37	10	135367822	135367822	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58496354	58496354	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2	10388	broad.mit.edu	37	20	58496354	58496354	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46326729	46326729	+	Silent	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYMPK	8189	broad.mit.edu	37	19	46326729	46326729	+	Silent	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152532772	152532772	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152532772	152532772	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35771598	35771598	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TADA2A	6871	broad.mit.edu	37	17	35771598	35771598	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPBP	6892	broad.mit.edu	37	6	33273031	33273031	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPBP	6892	broad.mit.edu	37	6	33273031	33273031	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP2	6895	broad.mit.edu	37	12	53899014	53899014	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP2	6895	broad.mit.edu	37	12	53899014	53899014	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30688782	30688782	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D10A	83874	broad.mit.edu	37	22	30688782	30688782	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114793673	114793673	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBX5	6910	broad.mit.edu	37	12	114793673	114793673	+	Nonsense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA1	6917	broad.mit.edu	37	8	54891760	54891761	+	Intron	INS	-	TA	TA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA1	6917	broad.mit.edu	37	8	54891760	54891761	+	Intron	INS	-	TA	TA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65147240	65147240	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65147240	65147240	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESC	54997	broad.mit.edu	37	12	117486969	117486969	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESC	54997	broad.mit.edu	37	12	117486969	117486969	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135379758	135379758	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFBI	7045	broad.mit.edu	37	5	135379758	135379758	+	Frame_Shift_Del	DEL	A	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43568648	43568648	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM7	116179	broad.mit.edu	37	15	43568648	43568648	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151820280	151820280	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEM5	284486	broad.mit.edu	37	1	151820280	151820280	+	Nonsense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32559330	32559330	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32559330	32559330	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD4	201798	broad.mit.edu	37	4	153691222	153691222	+	Missense_Mutation	SNP	G	A	A	rs149761550	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIGD4	201798	broad.mit.edu	37	4	153691222	153691222	+	Missense_Mutation	SNP	G	A	A	rs149761550	byFrequency	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156378518	156378518	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156378518	156378518	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98144286	98144286	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98144286	98144286	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM163	81615	broad.mit.edu	37	2	135214206	135214206	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM163	81615	broad.mit.edu	37	2	135214206	135214206	+	3'UTR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184B	25829	broad.mit.edu	37	22	38620938	38620938	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184B	25829	broad.mit.edu	37	22	38620938	38620938	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123755943	123755943	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123755943	123755943	+	Intron	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8B	51754	broad.mit.edu	37	9	35846183	35846183	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM8B	51754	broad.mit.edu	37	9	35846183	35846183	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19687463	19687463	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS15	5651	broad.mit.edu	37	21	19687463	19687463	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83289747	83289747	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC2	160335	broad.mit.edu	37	12	83289747	83289747	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNMD	64102	broad.mit.edu	37	X	99854659	99854659	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNMD	64102	broad.mit.edu	37	X	99854659	99854659	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74701674	74701674	+	Intron	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40661419	40661419	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNRC6B	23112	broad.mit.edu	37	22	40661419	40661419	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18047172	18047172	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18047172	18047172	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10908861	10908861	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998192	10998192	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10908861	10908861	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10998192	10998192	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3	7187	broad.mit.edu	37	14	103371649	103371649	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3	7187	broad.mit.edu	37	14	103371649	103371649	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30121946	30121946	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30121946	30121946	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16L	147166	broad.mit.edu	37	17	18634327	18634327	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16L	147166	broad.mit.edu	37	17	18634327	18634327	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM17	51127	broad.mit.edu	37	1	228602296	228602296	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM17	51127	broad.mit.edu	37	1	228602832	228602832	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM17	51127	broad.mit.edu	37	1	228602296	228602296	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM17	51127	broad.mit.edu	37	1	228602832	228602832	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM47	91107	broad.mit.edu	37	17	73870436	73870436	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM47	91107	broad.mit.edu	37	17	73870436	73870436	+	3'UTR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038382	55038382	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM48	79097	broad.mit.edu	37	11	55038382	55038382	+	3'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72958722	72958722	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72958722	72958722	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38320115	38320115	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38320115	38320115	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73399097	73399097	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM3	80036	broad.mit.edu	37	9	73399097	73399097	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77353458	77353458	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77353458	77353458	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142575519	142575519	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV6	55503	broad.mit.edu	37	7	142575519	142575519	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98592340	98592340	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81448604	81448604	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81499003	81499003	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81448604	81448604	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81499003	81499003	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC30A	92104	broad.mit.edu	37	2	178483345	178483345	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC30A	92104	broad.mit.edu	37	2	178483345	178483345	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94877669	94877669	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC37	9652	broad.mit.edu	37	5	94877669	94877669	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592313	179592313	+	Silent	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179592313	179592313	+	Silent	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19751729	19751729	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBA3C	7278	broad.mit.edu	37	13	19751729	19751729	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB3	10381	broad.mit.edu	37	16	89998933	89998933	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB3	10381	broad.mit.edu	37	16	89998933	89998933	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWIST1	7291	broad.mit.edu	37	7	19156565	19156565	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWIST1	7291	broad.mit.edu	37	7	19156565	19156565	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37896961	37896961	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37896961	37896961	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166571970	166571970	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
T	6862	broad.mit.edu	37	6	166571970	166571970	+	Missense_Mutation	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q1	55585	broad.mit.edu	37	1	154530853	154530853	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2Q1	55585	broad.mit.edu	37	1	154530853	154530853	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109964250	109964250	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3B	89910	broad.mit.edu	37	12	109964250	109964250	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5529784	5529784	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBQLN3	50613	broad.mit.edu	37	11	5529784	5529784	+	Missense_Mutation	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96601613	96601613	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96601613	96601613	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A7	54577	broad.mit.edu	37	2	234590853	234590853	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A7	54577	broad.mit.edu	37	2	234590853	234590853	+	Silent	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UIMC1	51720	broad.mit.edu	37	5	176332314	176332314	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UIMC1	51720	broad.mit.edu	37	5	176332314	176332314	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43505456	43505456	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMODL1	89766	broad.mit.edu	37	21	43505456	43505456	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMPS	7372	broad.mit.edu	37	3	124462773	124462773	+	Missense_Mutation	SNP	G	A	A	rs121917891		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMPS	7372	broad.mit.edu	37	3	124462773	124462773	+	Missense_Mutation	SNP	G	A	A	rs121917891		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216592004	216592004	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216592004	216592004	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61415909	61415909	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61415909	61415909	+	Intron	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11976665	11976665	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP47	55031	broad.mit.edu	37	11	11976665	11976665	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52598305	52598305	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP14C	9724	broad.mit.edu	37	13	52598305	52598305	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTY	7404	broad.mit.edu	37	Y	15398480	15398480	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTY	7404	broad.mit.edu	37	Y	15398480	15398480	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46174632	46174632	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46215352	46215352	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54171541	54171541	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	9764263	9764264	+	IGR	DNP	CG	GA	GA			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	20596456	20596456	+	IGR	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22335039	22335039	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41681666	41681666	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4232155	4232155	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4351560	4351560	+	IGR	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48649451	48649451	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053159	49053159	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49327463	49327463	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854983	49854983	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280673	56280673	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71373800	71373800	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89501299	89501299	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016201	90016201	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016481	90016481	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47987046	47987046	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80661044	80661044	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240756	19240756	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22202644	22202644	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55634934	55634934	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57889072	57889072	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103749376	103749376	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411848	19411848	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806945	19806945	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807152	19807152	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807211	19807211	+	IGR	SNP	G	T	T	rs74761662	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44010125	44010125	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77101542	77101542	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20148676	20148676	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20845006	20845006	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31129973	31129973	+	IGR	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78194178	78194178	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80237227	80237227	+	IGR	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32616915	32616915	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380221	33380221	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33408520	33408520	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412787	33412787	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424954	33424954	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629787	33629787	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647307	33647307	+	IGR	SNP	G	T	T	rs151009922	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34325004	34325004	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	18762483	18762483	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	88502	88502	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903210	148903210	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903574	148903574	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149102016	149102016	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216833	192216833	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406594	209406594	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400546	247400546	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89755596	89755596	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361572	12361572	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874531	29874531	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	22200290	22200290	+	IGR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26734311	26734311	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34987307	34987307	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114164233	114164233	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132144709	132144709	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141510	194141510	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53697690	53697690	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	63911550	63911550	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426647	81426647	+	IGR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127006189	127006189	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172321569	172321569	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75420240	75420240	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90283877	90283878	+	IGR	DNP	GG	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109710318	109710318	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112473135	112473135	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116842250	116842250	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012675	33012675	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	89430935	89430935	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154871855	154871855	+	IGR	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303904	23303904	+	IGR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305272	23305272	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909778	25909778	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116779444	116779444	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153603508	153603508	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	33967721	33967721	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634459	108634459	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118591338	118591338	+	IGR	SNP	C	A	A	rs57616419		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399465	136399465	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143855018	143855018	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695017	38695017	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071096	53071096	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665032	56665032	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56717614	56717614	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62586643	62586643	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33827101	33827101	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47704478	47704478	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73117537	73117537	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74827124	74827124	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94658310	94658310	+	IGR	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109931876	109931876	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36003010	36003010	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68324671	68324671	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88549873	88549873	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121673016	121673016	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139161792	139161792	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215353	155215353	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46174632	46174632	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46215352	46215352	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54171541	54171541	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	1814154	1814154	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	20596456	20596456	+	IGR	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22335039	22335039	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	41681666	41681666	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4351560	4351560	+	IGR	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48649451	48649451	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49053159	49053159	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49327463	49327463	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49854983	49854983	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280673	56280673	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	71373800	71373800	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89501299	89501299	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016201	90016201	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016481	90016481	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	47987046	47987046	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80661044	80661044	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240756	19240756	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22202644	22202644	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55634934	55634934	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	57889072	57889072	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	103749376	103749376	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19411848	19411848	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806945	19806945	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807152	19807152	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19807211	19807211	+	IGR	SNP	G	T	T	rs74761662	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	44010125	44010125	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	77101542	77101542	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20148676	20148676	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20845006	20845006	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31129973	31129973	+	IGR	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78194178	78194178	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80237227	80237227	+	IGR	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32616915	32616915	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33380221	33380221	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33408520	33408520	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33412787	33412787	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424954	33424954	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629787	33629787	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33647307	33647307	+	IGR	SNP	G	T	T	rs151009922	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34325004	34325004	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34569740	34569740	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	18762483	18762483	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	88502	88502	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903210	148903210	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903574	148903574	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149102016	149102016	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216833	192216833	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406594	209406594	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247400546	247400546	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	89755596	89755596	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12361572	12361572	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29874531	29874531	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	22200290	22200290	+	IGR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	26734311	26734311	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	32114786	32114786	+	IGR	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17336624	17336624	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34987307	34987307	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	114164233	114164233	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132144709	132144709	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194141510	194141510	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	53697690	53697690	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	63911550	63911550	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426647	81426647	+	IGR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	127006189	127006189	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	172321569	172321569	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75420240	75420240	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	90283877	90283878	+	IGR	DNP	GG	TT	TT			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	109710318	109710318	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112473135	112473135	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116842250	116842250	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	33012675	33012675	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154871855	154871855	+	IGR	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23303904	23303904	+	IGR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305272	23305272	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909778	25909778	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116779444	116779444	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	153603508	153603508	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	33967721	33967721	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108634459	108634459	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118591338	118591338	+	IGR	SNP	C	A	A	rs57616419		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399465	136399465	+	IGR	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143855018	143855018	+	IGR	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38695017	38695017	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071096	53071096	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56665032	56665032	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56717614	56717614	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62586643	62586643	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33827101	33827101	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47704478	47704478	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	73117537	73117537	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74827124	74827124	+	IGR	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94658310	94658310	+	IGR	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	109931876	109931876	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36003010	36003010	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68324671	68324671	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88549873	88549873	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	121673016	121673016	+	IGR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139161792	139161792	+	IGR	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	155215353	155215353	+	IGR	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133044835	133044835	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133044835	133044835	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62161883	62161883	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62161883	62161883	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38783118	38783118	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38783118	38783118	+	Missense_Mutation	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS72	6944	broad.mit.edu	37	1	151149152	151149152	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS72	6944	broad.mit.edu	37	1	151149152	151149152	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54614725	54614725	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VSTM2A	222008	broad.mit.edu	37	7	54614725	54614725	+	Intron	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASH7P	653635	broad.mit.edu	37	1	14948	14948	+	Intron	SNP	G	A	A	rs148911281	by1000genomes	TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30091910	30091910	+	RNA	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30091910	30091910	+	RNA	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70853165	70853165	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBSCR17	64409	broad.mit.edu	37	7	70853165	70853165	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113119471	113119471	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR52	55779	broad.mit.edu	37	3	113119471	113119471	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74650614	74650614	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74650614	74650614	+	Missense_Mutation	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	999728	999728	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	999728	999728	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228489	17228489	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XYLT1	64131	broad.mit.edu	37	16	17228489	17228489	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YARS	8565	broad.mit.edu	37	1	33282783	33282783	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YARS	8565	broad.mit.edu	37	1	33282783	33282783	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB3	79842	broad.mit.edu	37	11	62519947	62519947	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB3	79842	broad.mit.edu	37	11	62519947	62519947	+	Missense_Mutation	SNP	A	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB41	360023	broad.mit.edu	37	1	197145660	197145660	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB41	360023	broad.mit.edu	37	1	197145660	197145660	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H14	79882	broad.mit.edu	37	14	89074585	89074585	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100000244	100000244	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCWPW1	55063	broad.mit.edu	37	7	100000244	100000244	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766034	77766034	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766282	77766282	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766034	77766034	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77766282	77766282	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN4	387032	broad.mit.edu	37	6	28213080	28213080	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN4	387032	broad.mit.edu	37	6	28213080	28213080	+	Silent	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44804838	44804838	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44804838	44804838	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF202	7753	broad.mit.edu	37	11	123597329	123597329	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF202	7753	broad.mit.edu	37	11	123597329	123597329	+	Silent	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF22	7570	broad.mit.edu	37	10	45498738	45498738	+	5'UTR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF22	7570	broad.mit.edu	37	10	45498738	45498738	+	5'UTR	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF235	9310	broad.mit.edu	37	19	44792687	44792687	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF235	9310	broad.mit.edu	37	19	44792687	44792687	+	Missense_Mutation	SNP	T	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74580626	74580626	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74592319	74592319	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74580626	74580626	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74592319	74592319	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54074619	54074619	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF331	55422	broad.mit.edu	37	19	54074619	54074619	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF34	80778	broad.mit.edu	37	8	145999007	145999007	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF34	80778	broad.mit.edu	37	8	145999007	145999007	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71756465	71756465	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF366	167465	broad.mit.edu	37	5	71756465	71756465	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58439157	58439157	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF418	147686	broad.mit.edu	37	19	58439157	58439157	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37618662	37618662	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF420	147923	broad.mit.edu	37	19	37618662	37618662	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12461717	12461717	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF442	79973	broad.mit.edu	37	19	12461717	12461717	+	Nonsense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF444	55311	broad.mit.edu	37	19	56669857	56669857	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF444	55311	broad.mit.edu	37	19	56669857	56669857	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF530	348327	broad.mit.edu	37	19	58117956	58117956	+	Missense_Mutation	SNP	G	A	A	rs35182752		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF530	348327	broad.mit.edu	37	19	58117956	58117956	+	Missense_Mutation	SNP	G	A	A	rs35182752		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934761	30934761	+	Missense_Mutation	SNP	G	T	T	rs139989586		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934761	30934761	+	Missense_Mutation	SNP	G	T	T	rs139989586		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF586	54807	broad.mit.edu	37	19	58287980	58287980	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF586	54807	broad.mit.edu	37	19	58287980	58287980	+	Missense_Mutation	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58262174	58262174	+	Translation_Start_Site	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF587	84914	broad.mit.edu	37	19	58262174	58262174	+	Translation_Start_Site	SNP	G	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	60183	60183	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	60183	60183	+	Intron	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91403192	91403192	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF644	84146	broad.mit.edu	37	1	91403192	91403192	+	Missense_Mutation	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF697	90874	broad.mit.edu	37	1	120166700	120166700	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF697	90874	broad.mit.edu	37	1	120166700	120166700	+	Missense_Mutation	SNP	C	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	284169	284169	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF732	654254	broad.mit.edu	37	4	284169	284169	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF740	283337	broad.mit.edu	37	12	53579083	53579083	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF776	284309	broad.mit.edu	37	19	58239028	58239028	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF776	284309	broad.mit.edu	37	19	58239028	58239028	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146686009	146686009	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146686009	146686009	+	Intron	SNP	G	C	C			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF879	345462	broad.mit.edu	37	5	178454672	178454672	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF879	345462	broad.mit.edu	37	5	178454672	178454672	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF880	400713	broad.mit.edu	37	19	52876300	52876300	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF880	400713	broad.mit.edu	37	19	52876300	52876300	+	Intron	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74669120	74669120	+	Intron	DEL	T	-	-	rs113849001		TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62539669	62539669	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76074592	76074592	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107620	29107620	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31973421	31973421	+	RNA	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14219973	14219973	+	5'Flank	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52196169	52196169	+	RNA	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	33778171	33778171	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259944	90259944	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170985	24170985	+	Intron	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24171398	24171398	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9903546	9903546	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606899	100606899	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66517438	66517438	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48164288	48164288	+	5'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	62539669	62539669	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76074592	76074592	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107620	29107620	+	Intron	SNP	T	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31973421	31973421	+	RNA	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14219973	14219973	+	5'Flank	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14220038	14220038	+	5'Flank	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52196169	52196169	+	RNA	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	33778171	33778171	+	Missense_Mutation	SNP	G	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259944	90259944	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170985	24170985	+	Intron	DEL	G	-	-			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24171398	24171398	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9903546	9903546	+	Intron	SNP	C	T	T			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606899	100606899	+	Intron	SNP	A	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66517438	66517438	+	Intron	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48164288	48164288	+	5'UTR	SNP	C	A	A			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17140502	17140502	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-11A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
psiTPTE22	387590	broad.mit.edu	37	22	17140502	17140502	+	Intron	SNP	T	G	G			TCGA-91-6828-01A-11D-1855-08	TCGA-91-6828-10A-01D-1855-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
