Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ABL2	27	genome.wustl.edu	37	1	179095520	179095520	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	179095520	179095520	C	A	SNP	ABL2	NM_007314	human	genbank	57_37b	-1	reviewed	missense	c.679	p.D227Y	1.000	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_F_actin_bind,HMMSmart_SM00808	-	no_errors
ACER3	55331	genome.wustl.edu	37	11	76726161	76726161	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	76726161	76726161	G	C	SNP	ACER3	NM_018367	human	genbank	57_37b	+1	validated	missense	c.599	p.R200T	1.000	HMMPfam_aPHC	HMMPfam_aPHC	-	no_errors
ARMC4	55130	genome.wustl.edu	37	10	28273951	28273951	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	28273951	28273951	G	A	SNP	ARMC4	NM_018076	human	genbank	57_37b	-1	validated	missense	c.572	p.S191L	0.687	NULL	superfamily_ARM repeat,HMMSmart_SM00185,HMMPfam_Arm	-	no_errors
ASNSD1	54529	genome.wustl.edu	37	2	190535312	190535312	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	190535312	190535312	C	G	SNP	ASNSD1	NM_019048	human	genbank	57_37b	+1	validated	missense	c.1792	p.L598V	0.397	superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_Asn_synthase	superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases),superfamily_Adenine nucleotide alpha hydrolases-like,HMMPfam_Asn_synthase	-	no_errors
ATP10B	23120	genome.wustl.edu	37	5	160067594	160067594	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	160067594	160067594	C	G	SNP	ATP10B	NM_025153	human	genbank	57_37b	-1	validated	missense	c.874	p.E292Q	1.000	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N,HMMPfam_Hydrolase_3	-	no_errors
ATR	545	genome.wustl.edu	37	3	142172007	142172007	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	142172007	142172007	G	A	SNP	ATR	NM_001184	human	genbank	57_37b	-1	reviewed	missense	c.7724	p.A2575V	0.977	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00146	superfamily_ARM repeat,HMMPfam_HEAT,HMMPfam_UME,HMMSmart_SM00802,superfamily_TPR-like,HMMPfam_FAT,superfamily_Protein kinase-like (PK-like),HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,PatternScan_PI3_4_KINASE_2,HMMPfam_FATC	-	no_errors
ATXN2	6311	genome.wustl.edu	37	12	111991992	111991992	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	111991992	111991992	C	T	SNP	ATXN2	NM_002973	human	genbank	57_37b	-1	reviewed	missense	c.798	p.M266I	1.000	NULL	superfamily_Sm-like ribonucleoproteins,HMMPfam_LsmAD,HMMPfam_PAM2	-	no_errors
BAI3	577	genome.wustl.edu	37	6	70070933	70070933	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	70070933	70070933	G	C	SNP	BAI3	NM_001704	human	genbank	57_37b	+1	reviewed	missense	c.3768	p.L1256F	0.998	NULL	superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMSmart_SM00008,HMMPfam_HRM,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
C10orf72	196740	genome.wustl.edu	37	10	50294067	50294067	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	50294067	50294067	G	C	SNP	C10orf72	NM_001031746	human	genbank	57_37b	-1	validated	silent	c.459	p.V153	1.000	HMMSmart_SM00409	superfamily_Immunoglobulin,HMMSmart_SM00409	-	no_errors
C15orf55	256646	genome.wustl.edu	37	15	34640323	34640323	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34640323	34640323	C	T	SNP	C15orf55	NM_175741	human	genbank	57_37b	+1	validated	missense	c.170	p.P57L	0.635	NULL	NULL	-	no_errors
C21orf119	84996	genome.wustl.edu	37	21	33765732	33765732	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33765732	33765732	G	C	SNP	C21orf119	NR_026845	human	genbank	57_37b	+1	validated	rna	NULL	NULL	0.000	-	-	-	no_errors
C21orf91	54149	genome.wustl.edu	37	21	19190578	19190578	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	19190578	19190578	C	A	SNP	C21orf91	NM_001100420	human	genbank	57_37b	-1	validated	missense	c.58	p.V20F	1.000	HMMPfam_EURL	HMMPfam_EURL	-	no_errors
CAD	790	genome.wustl.edu	37	2	27449820	27449820	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	27449820	27449820	G	A	SNP	CAD	NM_004341	human	genbank	57_37b	+1	reviewed	missense	c.2277	p.M759I	1.000	superfamily_SSF56059	superfamily_CP_synthsmall,HMMPfam_CPSase_sm_chain,superfamily_SSF52317,HMMPfam_GATase,superfamily_PreATP-grasp-like,HMMPfam_CPSase_L_chain,HMMPfam_CPSase_L_D2,superfamily_SSF56059,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_D3,superfamily_SSF52335,HMMPfam_MGS,HMMPfam_Amidohydro_1,superfamily_SSF51556,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,superfamily_Metalo_hydrolase,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N,PatternScan_CARBAMOYLTRANSFERASE,HMMPfam_OTCace	-	no_errors
CASC5	57082	genome.wustl.edu	37	15	40914718	40914718	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	40914718	40914718	G	A	SNP	CASC5	NM_170589	human	genbank	57_37b	+1	validated	missense	c.2334	p.M778I	0.000	NULL	NULL	-	no_errors
CCT8L1	155100	genome.wustl.edu	37	7	152144042	152144042	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	152144042	152144042	G	A	SNP	CCT8L1	ENST00000021776	human	ensembl	57_37b	+1	known	nonsense	c.1481	p.W494*	1.000	superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1	PatternScan_TCP1_1,PatternScan_TCP1_2,PatternScan_TCP1_3,superfamily_GroEL-ATPase,HMMPfam_Cpn60_TCP1,superfamily_SSF54849,superfamily_SSF52029	-	no_errors
CDH15	1013	genome.wustl.edu	37	16	89254650	89254650	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	89254650	89254650	G	A	SNP	CDH15	NM_004933	human	genbank	57_37b	+1	reviewed	missense	c.935	p.R312H	0.139	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
CHD4	1108	genome.wustl.edu	37	12	6688060	6688060	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	6688060	6688060	C	A	SNP	CHD4	NM_001273	human	genbank	57_37b	-1	reviewed	nonsense	c.4933	p.E1645*	1.000	NULL	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,PatternScan_CHROMO_1,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
CNGA3	1261	genome.wustl.edu	37	2	99013187	99013187	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99013187	99013187	G	A	SNP	CNGA3	NM_001298	human	genbank	57_37b	+1	reviewed	silent	c.1554	p.E518	1.000	superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2	-	no_errors
CR1	1378	genome.wustl.edu	37	1	207793269	207793269	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	207793269	207793269	G	A	SNP	CR1	NM_000651	human	genbank	57_37b	+1	reviewed	missense	c.7111	p.E2371K	0.000	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
CRYGC	1420	genome.wustl.edu	37	2	208993007	208993007	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	208993007	208993007	G	A	SNP	CRYGC	NM_020989	human	genbank	57_37b	-1	reviewed	nonsense	c.445	p.Q149*	0.103	superfamily_gamma-Crystallin-like,HMMPfam_Crystall,HMMSmart_SM00247	superfamily_gamma-Crystallin-like,HMMPfam_Crystall,HMMSmart_SM00247	-	no_errors
CTDSP1	58190	genome.wustl.edu	37	2	219269049	219269049	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	219269049	219269049	G	C	SNP	CTDSP1	NM_021198	human	genbank	57_37b	+1	provisional	missense	c.687	p.M229I	1.000	superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc	superfamily_SSF56784,HMMPfam_NIF,HMMSmart_CPDc	-	no_errors
DCAF8L2	347442	genome.wustl.edu	37	X	27765792	27765792	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	27765792	27765792	G	A	SNP	DCAF8L2	NM_001136533	human	genbank	57_37b	+1	provisional	silent	c.780	p.Q260	0.002	superfamily_WD40 repeat-like,HMMSmart_SM00320	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
DDX49	54555	genome.wustl.edu	37	19	19035754	19035754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	19035754	19035754	C	T	SNP	DDX49	ENST00000438170	human	ensembl	57_37b	+1	known	missense	c.695	p.S232F	1.000	HMMSmart_SM00490	HMMPfam_DEAD,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAD_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C	-	no_errors
DNAH5	1767	genome.wustl.edu	37	5	13708337	13708337	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	13708337	13708337	G	A	SNP	DNAH5	NM_001369	human	genbank	57_37b	-1	reviewed	silent	c.13233	p.L4411	1.000	HMMPfam_Dynein_heavy	HMMPfam_DHC_N1,superfamily_Spectrin,HMMPfam_DHC_N2,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
DNAJC25-GNG10	0	genome.wustl.edu	37	9	114429136	114429136	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	114429136	114429136	G	C	SNP	DNAJC25-GNG10	NM_004125	human	genbank	57_37b	+1	validated	missense	c.378	p.Q126H	1.000	HMMSmart_GGL,HMMPfam_G-gamma	superfamily_DnaJ_N,HMMSmart_DnaJ,HMMPfam_DnaJ,HMMSmart_GGL,HMMPfam_G-gamma	-	no_errors
DYSF	8291	genome.wustl.edu	37	2	71871094	71871094	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	71871094	71871094	G	A	SNP	DYSF	NM_001130987	human	genbank	57_37b	+1	reviewed	splice_site	c.4528-1	e42-1	1.000	-	-	-	no_errors
EDC4	23644	genome.wustl.edu	37	16	67913012	67913012	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	67913012	67913012	C	A	SNP	EDC4	NM_014329	human	genbank	57_37b	+1	validated	silent	c.1440	p.A480	0.067	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40	-	no_errors
EGR2	1959	genome.wustl.edu	37	10	64573184	64573184	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	64573184	64573184	C	T	SNP	EGR2	NM_000399	human	genbank	57_37b	-1	reviewed	missense	c.1214	p.R405Q	1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ENSG00000228637	0	genome.wustl.edu	37	10	42392737	42392737	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	42392737	42392737	A	T	SNP	ENSG00000228637	ENST00000439345	human	ensembl	57_37b	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
EPB41	2035	genome.wustl.edu	37	1	29344900	29344900	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	29344900	29344900	C	G	SNP	EPB41	NM_203343	human	genbank	57_37b	+1	reviewed	missense	c.965	p.P322R	1.000	HMMSmart_B41,superfamily_FERM_3-hlx,HMMPfam_FERM_M	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,HMMPfam_FERM_C,HMMPfam_FA,HMMPfam_SAB,HMMPfam_4_1_CTD	-	no_errors
FAM47A	158724	genome.wustl.edu	37	X	34150228	34150228	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	34150228	34150228	G	A	SNP	FAM47A	NM_203408	human	genbank	57_37b	-1	predicted	silent	c.168	p.D56	0.020	NULL	NULL	-	no_errors
FAT4	79633	genome.wustl.edu	37	4	126412418	126412418	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	126412418	126412418	C	G	SNP	FAT4	NM_024582	human	genbank	57_37b	+1	validated	missense	c.14441	p.S4814C	0.983	NULL	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_ASX_HYDROXYL,HMMPfam_EGF,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
FREM1	158326	genome.wustl.edu	37	9	14868949	14868949	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	14868949	14868949	C	T	SNP	FREM1	NM_144966	human	genbank	57_37b	-1	validated	silent	c.27	p.A9	0.000	NULL	superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
GABRQ	55879	genome.wustl.edu	37	X	151815558	151815558	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	151815558	151815558	C	T	SNP	GABRQ	NM_018558	human	genbank	57_37b	+1	reviewed	silent	c.456	p.F152	0.000	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD	superfamily_Neur_chan_LBD,HMMPfam_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_memb	-	no_errors
GINS4	84296	genome.wustl.edu	37	8	41397268	41397268	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	41397268	41397268	G	A	SNP	GINS4	NM_032336	human	genbank	57_37b	+1	validated	silent	c.369	p.S123	0.817	HMMPfam_Sld5	HMMPfam_Sld5	-	no_errors
GK3P	0	genome.wustl.edu	37	4	166200610	166200610	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	166200610	166200610	G	C	SNP	GK3P	ENST00000413616	human	ensembl	57_37b	-1	known	missense	c.188	p.S63C	1.000	superfamily_SSF53067,HMMPfam_FGGY_N	superfamily_SSF53067,HMMPfam_FGGY_N,PatternScan_FGGY_KINASES_1,HMMPfam_FGGY_C,PatternScan_FGGY_KINASES_2	-	no_errors
GNPTAB	79158	genome.wustl.edu	37	12	102158936	102158936	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102158936	102158936	G	A	SNP	GNPTAB	NM_024312	human	genbank	57_37b	-1	validated	nonsense	c.1759	p.R587*	1.000	NULL	HMMSmart_SM00004,HMMPfam_Notch,superfamily_Notch domain,HMMPfam_DMAP_binding,PatternScan_EF_HAND_1	-	no_errors
GRID2	2895	genome.wustl.edu	37	4	94031970	94031970	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	94031970	94031970	G	A	SNP	GRID2	NM_001510	human	genbank	57_37b	+1	validated	missense	c.601	p.E201K	1.000	superfamily_SSF53822,HMMPfam_ANF_receptor	superfamily_SSF53822,HMMPfam_ANF_receptor,HMMSmart_PBPe,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
GTPBP4	23560	genome.wustl.edu	37	10	1046775	1046775	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	1046775	1046775	C	G	SNP	GTPBP4	NM_012341	human	genbank	57_37b	+1	reviewed	silent	c.813	p.L271	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NOG1	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NOG1,HMMPfam_NOGCT	-	no_errors
HIST1H2AK	8330	genome.wustl.edu	37	6	27805901	27805901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	27805901	27805901	C	T	SNP	HIST1H2AK	NM_003510	human	genbank	57_37b	-1	reviewed	missense	c.217	p.D73N	1.000	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone	superfamily_Histone-fold,HMMSmart_SM00414,HMMPfam_Histone,PatternScan_HISTONE_H2A	-	no_errors
HTT	3064	genome.wustl.edu	37	4	3224137	3224137	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	3224137	3224137	G	A	SNP	HTT	NM_002111	human	genbank	57_37b	+1	reviewed	missense	c.7393	p.E2465K	1.000	NULL	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
IGLON5	0	genome.wustl.edu	37	19	51831946	51831946	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	51831946	51831946	C	G	SNP	IGLON5	NM_001101372	human	genbank	57_37b	+1	provisional	nonsense	c.944	p.S315*	0.930	NULL	superfamily_SSF48726,HMMPfam_V-set,HMMSmart_IG,HMMPfam_ig,HMMSmart_IGc2	-	no_errors
IL17RB	55540	genome.wustl.edu	37	3	53899199	53899199	+	Missense_Mutation	SNP	A	A	G	rs2232351	byCluster;byFrequency;by1000genomes	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	53899199	53899199	A	G	SNP	IL17RB	NM_018725	human	genbank	57_37b	+1	reviewed	missense	c.1373	p.N458S	0.000	HMMPfam_SEFIR	HMMPfam_SEFIR	-	
IL1RAPL1	11141	genome.wustl.edu	37	X	29301288	29301288	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	29301288	29301288	C	T	SNP	IL1RAPL1	NM_014271	human	genbank	57_37b	+1	reviewed	missense	c.316	p.R106W	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMPfam_ig,HMMSmart_SM00408,superfamily_Toll/Interleukin receptor TIR domain,HMMSmart_SM00255,HMMPfam_TIR	-	no_errors
ISX	91464	genome.wustl.edu	37	22	35480375	35480375	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	22	35480375	35480375	G	C	SNP	ISX	NM_001008494	human	genbank	57_37b	+1	validated	splice_site	c.382-1	e3-1	1.000	-	-	-	no_errors
KCTD1	728606	genome.wustl.edu	37	18	24035810	24035810	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	24035810	24035810	C	G	SNP	KCTD1	NM_001142730	human	genbank	57_37b	-1	validated	missense	c.2495	p.G832A	1.000	NULL	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	-	no_errors
KIAA1045	23349	genome.wustl.edu	37	9	34977582	34977584	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	34977582	34977584	CAG	-	DEL	KIAA1045	NM_015297	human	genbank	57_37b	+1	validated	in_frame_del	c.1050_1052	p.S354in_frame_del	1.000:1.000:1.000	NULL	PatternScan_ZF_PHD_1	(deletion:cds_exon[34977543,34977638])	no_errors
KIAA1751	85452	genome.wustl.edu	37	1	1900265	1900265	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	1900265	1900265	C	T	SNP	KIAA1751	NM_001080484	human	genbank	57_37b	-1	predicted	missense	c.1054	p.E352K	0.995	NULL	NULL	-	no_errors
KIAA2022	340533	genome.wustl.edu	37	X	73963037	73963037	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	73963037	73963037	G	A	SNP	KIAA2022	NM_001008537	human	genbank	57_37b	-1	validated	missense	c.1355	p.A452V	1.000	NULL	NULL	-	no_errors
KIF1C	10749	genome.wustl.edu	37	17	4906086	4906086	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	4906086	4906086	C	T	SNP	KIF1C	NM_006612	human	genbank	57_37b	+1	provisional	silent	c.669	p.I223	0.966	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SMAD_FHA,HMMSmart_FHA,HMMPfam_FHA	-	no_errors
LMO7	4008	genome.wustl.edu	37	13	76430698	76430698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	76430698	76430698	C	T	SNP	LMO7	NM_015842	human	genbank	57_37b	+1	reviewed	missense	c.4019	p.S1340L	1.000	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ	-	no_errors
LOC440518	440518	genome.wustl.edu	37	19	22779151	22779151	+	RNA	SNP	C	C	A	rs56051913	byCluster;by1000genomes	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	22779151	22779151	C	A	SNP	LOC440518	XR_041921	human	genbank	57_37b	+1	model	rna	NULL	NULL	0.006	-	-	-	
LOXHD1	125336	genome.wustl.edu	37	18	44104553	44104553	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	44104553	44104553	C	T	SNP	LOXHD1	NM_144612	human	genbank	57_37b	-1	reviewed	silent	c.3918	p.G1306	1.000	NULL	superfamily_Lipase_LipOase,HMMPfam_PLAT,HMMSmart_LH2	-	no_errors
LPPR5	0	genome.wustl.edu	37	1	99358642	99358642	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	99358642	99358642	C	T	SNP	LPPR5	NM_001037317	human	genbank	57_37b	-1	reviewed	missense	c.952	p.A318T	1.000	NULL	superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase,HMMPfam_PAP2,HMMSmart_SM00014	-	no_errors
MDN1	23195	genome.wustl.edu	37	6	90371881	90371881	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	90371881	90371881	C	G	SNP	MDN1	NM_014611	human	genbank	57_37b	-1	provisional	missense	c.14490	p.K4830N	0.144	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_vWA-like,HMMSmart_SM00327	-	no_errors
MIR369	0	genome.wustl.edu	37	14	101531971	101531971	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	101531971	101531971	G	A	SNP	MIR369	ENST00000362155	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.948	-	-	-	no_errors
MMS19	64210	genome.wustl.edu	37	10	99222427	99222427	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	99222427	99222427	G	T	SNP	MMS19	NM_022362	human	genbank	57_37b	-1	validated	nonsense	c.1925	p.S642*	0.333	superfamily_ARM repeat	superfamily_ARM repeat,PatternScan_PEROXIDASE_1,HMMPfam_HEAT	-	no_errors
MUC17	140453	genome.wustl.edu	37	7	100685492	100685492	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	100685492	100685492	C	T	SNP	MUC17	NM_001040105	human	genbank	57_37b	+1	provisional	missense	c.10795	p.P3599S	0.000	NULL	superfamily_EGF/Laminin,PatternScan_EGF_1,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
MUC4	4585	genome.wustl.edu	37	3	195490502	195490502	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195490502	195490502	G	A	SNP	MUC4	NM_018406	human	genbank	57_37b	-1	reviewed	silent	c.13671	p.F4557	0.995	HMMSmart_SM00216,HMMPfam_VWD	HMMSmart_SM00539,HMMPfam_NIDO,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00723,HMMPfam_AMOP,HMMSmart_SM00216,HMMPfam_VWD,PatternScan_EGF_1,HMMSmart_SM00181,superfamily_EGF/Laminin	-	no_errors
MYBPC1	4604	genome.wustl.edu	37	12	102040663	102040663	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	102040663	102040663	G	C	SNP	MYBPC1	NM_002465	human	genbank	57_37b	+1	validated	missense	c.1088	p.R363T	1.000	superfamily_Immunoglobulin,HMMSmart_SM00409	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
MYBPC2	4606	genome.wustl.edu	37	19	50945512	50945512	+	Missense_Mutation	SNP	G	G	C	rs35951152	byCluster;byFrequency;by1000genomes	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50945512	50945512	G	C	SNP	MYBPC2	NM_004533	human	genbank	57_37b	+1	validated	missense	c.844	p.D282H	1.000	superfamily_SSF48726,HMMPfam_I-set,HMMSmart_IG	superfamily_SSF48726,HMMSmart_IG,HMMPfam_I-set,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,HMMSmart_IGc2	-	
NACA	4666	genome.wustl.edu	37	12	57115051	57115051	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	57115051	57115051	C	G	SNP	NACA	NM_001113203	human	genbank	57_37b	-1	validated	missense	c.263	p.G88A	0.004	NULL	HMMPfam_NAC,HMMPfam_UBA	-	no_errors
NKD2	85409	genome.wustl.edu	37	5	1036962	1036962	+	Nonsense_Mutation	SNP	C	C	A	rs34413936	byCluster;by1000genomes	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	1036962	1036962	C	A	SNP	NKD2	ENST00000382730	human	ensembl	57_37b	+1	known	nonsense	c.68	p.S23*	0.997	NULL	NULL	-	
NLRP13	126204	genome.wustl.edu	37	19	56423843	56423843	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56423843	56423843	G	C	SNP	NLRP13	NM_176810	human	genbank	57_37b	-1	validated	nonsense	c.1340	p.S447*	0.000	NULL	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047,HMMPfam_LRR_1	-	no_errors
NLRP13	126204	genome.wustl.edu	37	19	56424232	56424232	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56424232	56424232	G	C	SNP	NLRP13	NM_176810	human	genbank	57_37b	-1	validated	missense	c.951	p.I317M	0.000	HMMPfam_NACHT	HMMPfam_LRR_1,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047	-	no_errors
NPAT	4863	genome.wustl.edu	37	11	108047018	108047018	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	108047018	108047018	C	T	SNP	NPAT	NM_002519	human	genbank	57_37b	-1	validated	missense	c.1087	p.E363K	1.000	NULL	HMMSmart_SM00667	-	no_errors
NUFIP1	26747	genome.wustl.edu	37	13	45540046	45540046	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	45540046	45540046	C	G	SNP	NUFIP1	NM_012345	human	genbank	57_37b	-1	validated	missense	c.760	p.E254Q	1.000	HMMPfam_NUFIP1	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_NUFIP1	-	no_errors
OPRL1	4987	genome.wustl.edu	37	20	62729457	62729457	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	62729457	62729457	C	G	SNP	OPRL1	NM_000913	human	genbank	57_37b	+1	reviewed	missense	c.536	p.S179C	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR10G4	390264	genome.wustl.edu	37	11	123887198	123887198	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	123887198	123887198	C	A	SNP	OR10G4	NM_001004462	human	genbank	57_37b	+1	provisional	missense	c.917	p.A306E	0.000	NULL	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
OR52N5	390075	genome.wustl.edu	37	11	5799262	5799262	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	5799262	5799262	G	C	SNP	OR52N5	NM_001001922	human	genbank	57_37b	-1	validated	missense	c.603	p.I201M	0.261	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
P4HA3	283208	genome.wustl.edu	37	11	73988110	73988110	+	Missense_Mutation	SNP	G	G	A	rs74354101	byCluster;byFrequency;by1000genomes	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	73988110	73988110	G	A	SNP	P4HA3	NM_182904	human	genbank	57_37b	-1	reviewed	missense	c.1255	p.R419W	1.000	HMMSmart_SM00702	HMMPfam_P4Ha_N,superfamily_TPR-like,HMMSmart_SM00702,HMMPfam_2OG-FeII_Oxy	-	
PCDHA7	56141	genome.wustl.edu	37	5	140214152	140214152	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140214152	140214152	C	T	SNP	PCDHA7	NM_018910	human	genbank	57_37b	+1	reviewed	missense	c.184	p.R62C	0.996	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PCDHB7	56129	genome.wustl.edu	37	5	140552525	140552525	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140552525	140552525	G	A	SNP	PCDHB7	NM_018940	human	genbank	57_37b	+1	reviewed	missense	c.109	p.E37K	0.997	HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin_2,superfamily_Cadherin-like,PatternScan_CADHERIN_1,HMMPfam_Cadherin,HMMSmart_SM00112	-	no_errors
PCDHGB7	56099	genome.wustl.edu	37	5	140798033	140798033	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140798033	140798033	G	A	SNP	PCDHGB7	NM_018927	human	genbank	57_37b	+1	reviewed	missense	c.607	p.E203K	1.000	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PLEC	0	genome.wustl.edu	37	8	145001160	145001160	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	145001160	145001160	C	G	SNP	PLEC	NM_201380	human	genbank	57_37b	-1	reviewed	missense	c.4341	p.E1447D	0.998	superfamily_Spectrin repeat,HMMSmart_SM00150	HMMPfam_S10_plectin,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMSmart_SM00150,superfamily_Plakin repeat,HMMSmart_SM00250,HMMPfam_Plectin	-	no_errors
PLXDC1	57125	genome.wustl.edu	37	17	37263689	37263689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37263689	37263689	C	T	SNP	PLXDC1	NM_020405	human	genbank	57_37b	-1	validated	missense	c.682	p.D228N	0.067	NULL	HMMPfam_PSI	-	no_errors
POU6F2	11281	genome.wustl.edu	37	7	39503850	39503850	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	39503850	39503850	G	C	SNP	POU6F2	NM_007252	human	genbank	57_37b	+1	reviewed	silent	c.1641	p.L547	1.000	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
PTH2R	5746	genome.wustl.edu	37	2	209302289	209302289	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	209302289	209302289	G	A	SNP	PTH2R	NM_005048	human	genbank	57_37b	+1	reviewed	missense	c.206	p.G69E	1.000	superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1	superfamily_SSF111418,HMMSmart_HormR,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_SSF81321,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
PTPRQ	374462	genome.wustl.edu	37	12	81013271	81013271	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	81013271	81013271	A	G	SNP	PTPRQ	ENST00000266688	human	ensembl	57_37b	+1	known	missense	c.5339	p.D1780G	1.000	NULL	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
RGS22	26166	genome.wustl.edu	37	8	101092487	101092487	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	101092487	101092487	G	C	SNP	RGS22	NM_015668	human	genbank	57_37b	-1	validated	missense	c.214	p.L72V	0.995	NULL	superfamily_Regulator of G-protein signaling RGS,HMMSmart_SM00315,HMMPfam_RGS	-	no_errors
RYR2	6262	genome.wustl.edu	37	1	237897015	237897015	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	237897015	237897015	G	A	SNP	RYR2	NM_001035	human	genbank	57_37b	+1	reviewed	missense	c.11050	p.E3684K	1.000	NULL	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_RYDR_ITPR,HMMPfam_SPRY,HMMSmart_SM00449,HMMPfam_RyR,HMMPfam_RIH_assoc,superfamily_EF-hand,HMMPfam_RR_TM4-6,HMMPfam_Ion_trans	-	no_errors
SBNO1	55206	genome.wustl.edu	37	12	123795660	123795660	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	123795660	123795660	C	G	SNP	SBNO1	NM_018183	human	genbank	57_37b	-1	validated	silent	c.3234	p.L1078	0.998	NULL	NULL	-	no_errors
SEMA3A	10371	genome.wustl.edu	37	7	83634727	83634727	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	83634727	83634727	G	C	SNP	SEMA3A	NM_006080	human	genbank	57_37b	-1	reviewed	missense	c.1288	p.Q430E	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
SEMA3C	10512	genome.wustl.edu	37	7	80418802	80418802	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	80418802	80418802	C	A	SNP	SEMA3C	NM_006379	human	genbank	57_37b	-1	validated	nonsense	c.1174	p.E392*	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG	-	no_errors
SEMA3E	9723	genome.wustl.edu	37	7	83119463	83119463	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	83119463	83119463	G	A	SNP	SEMA3E	NM_012431	human	genbank	57_37b	-1	provisional	silent	c.243	p.L81	1.000	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema	superfamily_Sema,HMMPfam_Sema,HMMSmart_Sema,HMMSmart_PSI,superfamily_Plexin-like_fold,superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig	-	no_errors
SLC34A3	142680	genome.wustl.edu	37	9	140126583	140126583	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	140126583	140126583	C	T	SNP	SLC34A3	NM_080877	human	genbank	57_37b	+1	validated	nonsense	c.145	p.Q49*	0.999	NULL	HMMPfam_Na_Pi_cotrans	-	no_errors
SMO	6608	genome.wustl.edu	37	7	128850818	128850818	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128850818	128850818	G	A	SNP	SMO	NM_005631	human	genbank	57_37b	+1	provisional	silent	c.1665	p.Q555	1.000	HMMPfam_Frizzled	HMMPfam_Fz,superfamily_Frizzled cysteine-rich domain,HMMSmart_SM00063,HMMPfam_Frizzled	-	no_errors
SOD1	6647	genome.wustl.edu	37	21	33039646	33039646	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	33039646	33039646	C	G	SNP	SOD1	NM_000454	human	genbank	57_37b	+1	reviewed	missense	c.315	p.I105M	0.015	HMMPfam_Sod_Cu,superfamily_CuZn superoxide dismutase-like	HMMPfam_Sod_Cu,superfamily_CuZn superoxide dismutase-like,PatternScan_SOD_CU_ZN_1,PatternScan_SOD_CU_ZN_2	-	no_errors
SPINK2	6691	genome.wustl.edu	37	4	57677909	57677909	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	57677909	57677909	C	G	SNP	SPINK2	NM_021114	human	genbank	57_37b	-1	provisional	missense	c.151	p.V51L	0.984	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,PatternScan_KAZAL	superfamily_Kazal-type serine protease inhibitors,HMMSmart_SM00280,HMMPfam_Kazal_1,PatternScan_KAZAL	-	no_errors
SRBD1	55133	genome.wustl.edu	37	2	45789854	45789854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	45789854	45789854	C	T	SNP	SRBD1	NM_018079	human	genbank	57_37b	-1	validated	silent	c.1347	p.T449	0.995	NULL	HMMPfam_Tex_N,HMMSmart_SM00732,superfamily_Nucleic acid-binding proteins,HMMPfam_S1,HMMSmart_SM00316	-	no_errors
STON1-GTF2A1L	286749	genome.wustl.edu	37	2	48808551	48808551	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	48808551	48808551	C	G	SNP	STON1-GTF2A1L	NM_172311	human	genbank	57_37b	+1	reviewed	missense	c.779	p.S260C	0.537	NULL	superfamily_AP50,HMMPfam_Adap_comp_sub,superfamily_TFIIA_helical,HMMPfam_TFIIA,superfamily_TFIIA_betabarrel	-	no_errors
TAF1L	138474	genome.wustl.edu	37	9	32634886	32634886	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	32634886	32634886	A	G	SNP	TAF1L	NM_153809	human	genbank	57_37b	-1	provisional	missense	c.692	p.L231S	0.999	NULL	HMMPfam_TBP-binding,superfamily_TAF_II_230,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
TAS2R9	50835	genome.wustl.edu	37	12	10962482	10962482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	10962482	10962482	C	T	SNP	TAS2R9	NM_023917	human	genbank	57_37b	-1	reviewed	missense	c.193	p.D65N	0.262	HMMPfam_TAS2R,superfamily_SSF81321	HMMPfam_TAS2R,superfamily_SSF81321	-	no_errors
TBCD	6904	genome.wustl.edu	37	17	80767627	80767627	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	80767627	80767627	G	A	SNP	TBCD	NM_005993	human	genbank	57_37b	+1	reviewed	missense	c.1192	p.D398N	0.999	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_HEAT	-	no_errors
TCL6	27004	genome.wustl.edu	37	14	96129821	96129821	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	96129821	96129821	C	G	SNP	TCL6	ENST00000355931	human	ensembl	57_37b	+1	known	missense	c.40	p.Q14E	0.002	NULL	NULL	-	no_errors
TG	7038	genome.wustl.edu	37	8	133945871	133945871	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	133945871	133945871	G	T	SNP	TG	NM_003235	human	genbank	57_37b	+1	reviewed	missense	c.4882	p.D1628Y	1.000	NULL	superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_TNF receptor-like,HMMPfam_GCC2_GCC3,HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
THBS3	7059	genome.wustl.edu	37	1	155167681	155167681	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	155167681	155167681	G	C	SNP	THBS3	NM_007112	human	genbank	57_37b	-1	reviewed	silent	c.2292	p.G764	1.000	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_TSP_C	HMMSmart_SM00210,superfamily_EGF/Laminin,HMMSmart_SM00181,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_SM00179,PatternScan_EGF_2,superfamily_TSP type-3 repeat,HMMPfam_TSP_3,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_TSP_C	-	no_errors
TMC5	79838	genome.wustl.edu	37	16	19501758	19501759	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19501758	19501759	CT	-	DEL	TMC5	NM_001105248	human	genbank	57_37b	+1	validated	frame_shift_del	c.2615_2616	p.F874fs	0.870:0.130	NULL	HMMPfam_TMC	(deletion:cds_exon[19501717,19501890])	no_errors
TMPRSS11E	28983	genome.wustl.edu	37	4	69334622	69334622	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	69334622	69334622	C	A	SNP	TMPRSS11E	NM_014058	human	genbank	57_37b	+1	validated	missense	c.284	p.P95Q	0.000	superfamily_SSF82671,HMMPfam_SEA	superfamily_SSF82671,HMMPfam_SEA,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TNRC18	27320	genome.wustl.edu	37	7	5399197	5399197	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	5399197	5399197	C	T	SNP	TNRC18	NM_001080495	human	genbank	57_37b	-1	provisional	silent	c.4665	p.L1555	1.000	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577124	7577124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	7577124	7577124	C	T	SNP	TP53	NM_000546	human	genbank	57_37b	-1	reviewed	missense	c.814	p.V272M	1.000	HMMPfam_P53,superfamily_p53-like transcription factors	HMMPfam_P53_TAD,HMMPfam_P53,superfamily_p53-like transcription factors,PatternScan_P53,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain	-	no_errors
TRIM42	287015	genome.wustl.edu	37	3	140401809	140401809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	140401809	140401809	G	A	SNP	TRIM42	NM_152616	human	genbank	57_37b	+1	reviewed	missense	c.847	p.E283K	0.465	NULL	PatternScan_TNFR_NGFR_1,superfamily_RING/U-box,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMSmart_SM00336,HMMPfam_zf-B_box,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
TRIM8	81603	genome.wustl.edu	37	10	104416924	104416924	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	104416924	104416924	C	G	SNP	TRIM8	NM_030912	human	genbank	57_37b	+1	validated	missense	c.1469	p.S490C	1.000	NULL	superfamily_SSF57850,HMMSmart_RING,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1	-	no_errors
TTC39C	125488	genome.wustl.edu	37	18	21712496	21712496	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	21712496	21712496	C	T	SNP	TTC39C	NM_001135993	human	genbank	57_37b	+1	validated	silent	c.1710	p.I570	1.000	NULL	HMMPfam_Deme6,superfamily_TPR-like	-	no_errors
UBAC1	10422	genome.wustl.edu	37	9	138845595	138845595	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	138845595	138845595	G	C	SNP	UBAC1	NM_016172	human	genbank	57_37b	-1	validated	silent	c.264	p.V88	0.988	superfamily_SSF54236	superfamily_SSF54236,superfamily_UBA_like,HMMPfam_UBA,HMMSmart_UBA,HMMSmart_STI1	-	no_errors
ULBP3	79465	genome.wustl.edu	37	6	150387233	150387233	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	150387233	150387233	C	G	SNP	ULBP3	NM_024518	human	genbank	57_37b	-1	provisional	missense	c.154	p.E52Q	0.004	superfamily_MHC antigen-recognition domain	superfamily_MHC antigen-recognition domain,HMMPfam_MHC_I	-	no_errors
UNC5C	8633	genome.wustl.edu	37	4	96123917	96123917	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	96123917	96123917	C	T	SNP	UNC5C	NM_003728	human	genbank	57_37b	-1	reviewed	missense	c.2101	p.V701I	1.000	NULL	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00209,HMMPfam_TSP_1,HMMPfam_ZU5,HMMSmart_SM00218,superfamily_DEATH domain,HMMSmart_SM00005,HMMPfam_Death	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	216246562	216246562	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216246562	216246562	T	C	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	missense	c.5653	p.R1885G	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	216498908	216498908	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	216498908	216498908	G	A	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	silent	c.882	p.L294	0.000	HMMSmart_SM00136	HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_fn3,HMMSmart_SM00060,HMMSmart_SM00560,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
WDR67	93594	genome.wustl.edu	37	8	124132400	124132400	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124132400	124132400	C	T	SNP	WDR67	NM_145647	human	genbank	57_37b	+1	validated	silent	c.1542	p.I514	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
WWC1	23286	genome.wustl.edu	37	5	167855767	167855767	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	167855767	167855767	G	A	SNP	WWC1	NM_015238	human	genbank	57_37b	+1	reviewed	missense	c.1975	p.A659T	0.071	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	superfamily_WW domain,HMMSmart_SM00456,HMMPfam_WW,PatternScan_WW_DOMAIN_1,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
YES1	7525	genome.wustl.edu	37	18	756691	756691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	18	756691	756691	G	A	SNP	YES1	NM_005433	human	genbank	57_37b	-1	reviewed	missense	c.137	p.S46L	0.109	NULL	superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
ZDHHC3	51304	genome.wustl.edu	37	3	44959580	44959580	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	44959580	44959580	T	A	SNP	ZDHHC3	NM_001135180	human	genbank	57_37b	-1	validated	missense	c.797	p.Q266L	0.132	NULL	HMMPfam_zf-DHHC	-	no_errors
ZIC3	7547	genome.wustl.edu	37	X	136652162	136652162	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	136652162	136652162	C	G	SNP	ZIC3	NM_003413	human	genbank	57_37b	+1	reviewed	missense	c.1337	p.S446C	1.000	NULL	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,superfamily_SSF57667,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF296	162979	genome.wustl.edu	37	19	45574867	45574867	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	45574867	45574867	C	T	SNP	ZNF296	NM_145288	human	genbank	57_37b	-1	provisional	missense	c.1420	p.E474K	0.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2,superfamily_SSF57667	-	no_errors
ZNF667	63934	genome.wustl.edu	37	19	56953658	56953658	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	56953658	56953658	G	A	SNP	ZNF667	NM_022103	human	genbank	57_37b	-1	validated	nonsense	c.706	p.Q236*	0.000	HMMSmart_SM00355	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF772	400720	genome.wustl.edu	37	19	57984669	57984669	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57984669	57984669	C	A	SNP	ZNF772	NM_001024596	human	genbank	57_37b	-1	validated	missense	c.1443	p.W481C	0.645	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
ZNF808	388558	genome.wustl.edu	37	19	53057385	53057385	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A04W-01A-31D-A10Y-09	TCGA-A2-A04W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	53057385	53057385	A	G	SNP	ZNF808	NM_001039886	human	genbank	57_37b	+1	validated	missense	c.1216	p.K406E	0.124	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
