Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
SLC2A7	155184	genome.wustl.edu	37	1	9064853	9064853	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207420.2	-1	provisional	p.W426*	1.000	87	0%	76	36.8%	-	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
TMEM51	55092	genome.wustl.edu	37	1	15541757	15541757	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136216.1	+1	validated	p.L58	0.801	62	0%	111	26.1%	-	-	-	-	-	NULL
PLA2G2D	26279	genome.wustl.edu	37	1	20440659	20440659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012400.2	-1	provisional	p.R129Q	0.000	37	0%	33	21.2%	-	-	benign(0.028)	deleterious(0.04)	neutral(0.350)	HMMPfam_Phospholip_A2_1,HMMSmart_PA2c,superfamily_PhospholipaseA2
LDLRAD2	401944	genome.wustl.edu	37	1	22140931	22140931	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013693.2	+1	validated	p.D42	1.000	13	0%	14	28.6%	-	-	-	-	-	superfamily_CUB
KHDRBS1	10657	genome.wustl.edu	37	1	32503460	32503460	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006559.1	+1	provisional	p.R310	0.994	128	0%	148	23.6%	-	-	-	-	-	NULL
ADC	113451	genome.wustl.edu	37	1	33557704	33557704	+	Nonsense_Mutation	SNP	C	C	A	rs192729842	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052998.2	+1	validated	p.C111*	0.462	182	0%	120	26.7%	-	-	-	-	-	HMMPfam_Orn_Arg_deC_N,superfamily_PLP-binding barrel
IPO13	9670	genome.wustl.edu	37	1	44415659	44415659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014652.3	+1	reviewed	p.R219C	1.000	18	0%	25	40%	-	-	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	HMMPfam_Xpo1,superfamily_ARM-type_fold
KIF2C	11004	genome.wustl.edu	37	1	45227626	45227626	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423289	+1	known	p.I52T	0.997	93	0%	122	13.9%	-	-	-	-	-	HMMPfam_Kinesin,superfamily_P-loop containing nucleoside triphosphate hydrolases
PTCH2	8643	genome.wustl.edu	37	1	45294011	45294011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003738.4	-1	reviewed	p.R556W	1.000	31	0%	27	22.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patched
TOE1	114034	genome.wustl.edu	37	1	45808640	45808640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025077.3	+1	validated	p.R293H	0.000	117	0%	131	32.8%	-	-	benign(0.008)	tolerated(0.12)	neutral(0.261)	HMMPfam_CAF1
LRRC41	10489	genome.wustl.edu	37	1	46751559	46751559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006369.4	-1	validated	p.R324C	1.000	96	0%	121	23.1%	-	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
NRD1	4898	genome.wustl.edu	37	1	52254944	52254944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000440943	-1	known	p.T527A	0.992	333	0%	285	21.1%	-	-	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
CYB5RL	606495	genome.wustl.edu	37	1	54656521	54656521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031672.2	-1	provisional	p.I83V	0.985	30	0%	22	27.3%	-	-	benign(0)	tolerated(0.88)	-	HMMPfam_FAD_binding_6,superfamily_Riboflavin synthase domain-like
LRRC8D	55144	genome.wustl.edu	37	1	90400109	90400109	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001134479.1	+1	validated	p.V494	1.000	119	0%	95	21.1%	-	-	-	-	-	superfamily_SSF52058
ABCA4	24	genome.wustl.edu	37	1	94488947	94488947	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000350.2	-1	reviewed	p.E1554	1.000	62	0%	60	11.7%	-	-	-	-	-	NULL
AMY2A	279	genome.wustl.edu	37	1	104160191	104160191	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000423678	+1	known	p.*42R	1.000	403	0%	414	22.7%	-	-	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
TRIM33	51592	genome.wustl.edu	37	1	114970500	114970500	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015906.3	-1	reviewed	p.R391I	1.000	109	0%	128	24.2%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMSmart_SM00502
CSDE1	7812	genome.wustl.edu	37	1	115267885	115267885	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130523.1	-1	validated	p.K585N	1.000	459	0%	504	24.2%	-	-	probably_damaging(0.999)	tolerated(0.24)	deleterious(0.528)	HMMPfam_CSD,HMMSmart_SM00357,superfamily_Nucleic acid-binding proteins
HAO2	51179	genome.wustl.edu	37	1	119927403	119927403	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005783.1	+1	reviewed	p.A96	0.435	156	0%	164	23.2%	-	-	-	-	-	HMMPfam_FMN_dh,superfamily_FMN-linked oxidoreductases
HIST2H2BF	440689	genome.wustl.edu	37	1	149783765	149783765	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000427880	-1	known	p.Y38	0.997	296	0%	288	25.3%	-	-	-	-	-	HMMSmart_H2B,HMMPfam_Histone,superfamily_Histone-fold
ARNT	405	genome.wustl.edu	37	1	150786565	150786565	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001668.2	-1	reviewed	p.G701*	0.967	183	0%	160	19.4%	-	-	-	-	-	superfamily_Positive stranded ssRNA viruses
CGN	57530	genome.wustl.edu	37	1	151507517	151507517	+	Splice_Site	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020770.2	+1	validated	e15-1	1.000	72	0%	53	24.5%	-	-	-	-	-	-
FLG	2312	genome.wustl.edu	37	1	152285586	152285586	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002016.1	-1	reviewed	p.S592	0.001	393	0%	282	24.8%	-	-	-	-	-	HMMPfam_Filaggrin
GBA	2629	genome.wustl.edu	37	1	155207998	155207998	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000157.3	-1	reviewed	p.V230M	0.998	46	0%	54	27.8%	-	-	benign(0.007)	tolerated(0.98)	-	HMMPfam_Glyco_hydro_30,superfamily_(Trans)glycosidases
ASH1L	55870	genome.wustl.edu	37	1	155317683	155317683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018489.2	-1	reviewed	p.R2523C	1.000	252	0%	306	24.5%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
KIRREL	55243	genome.wustl.edu	37	1	158063222	158063222	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018240.5	+1	validated	p.R522Q	1.000	101	0%	85	18.8%	-	-	probably_damaging(0.993)	tolerated(0.11)	deleterious(0.722)	NULL
PYHIN1	149628	genome.wustl.edu	37	1	158911853	158911853	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152501.3	+1	validated	p.A222	0.002	102	0%	126	24.6%	-	-	-	-	-	HMMPfam_HIN
ADAMTS4	9507	genome.wustl.edu	37	1	161167873	161167873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005099.4	-1	reviewed	p.R182H	1.000	69	0%	97	20.6%	-	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_Pep_M12B_propep
LMX1A	4009	genome.wustl.edu	37	1	165182886	165182886	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177398.3	-1	validated	p.C221R	1.000	187	0%	136	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
DUSP27	92235	genome.wustl.edu	37	1	167096896	167096896	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080426.1	+1	provisional	p.M843T	1.000	217	0%	190	22.6%	-	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
CAMSAP2	23271	genome.wustl.edu	37	1	200776506	200776506	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_203459.1	+1	validated	p.S134	0.997	242	0%	266	21.4%	-	-	-	-	-	NULL
SYT2	127833	genome.wustl.edu	37	1	202574843	202574843	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136504.1	-1	validated	p.A20T	0.601	74	0%	60	30%	-	-	unknown(0)	tolerated(0.44)	-	NULL
PM20D1	148811	genome.wustl.edu	37	1	205811843	205811843	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152491.4	-1	validated	p.S288	0.000	144	0%	163	26.4%	-	-	-	-	-	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Bacterial exopeptidase dimerisation domain,superfamily_Zn-dependent exopeptidases
FAM71A	149647	genome.wustl.edu	37	1	212799052	212799052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153606.3	+1	validated	p.A278V	0.000	101	0%	72	22.2%	-	-	benign(0.007)	tolerated(0.28)	neutral(0.032)	NULL
ADSS	159	genome.wustl.edu	37	1	244579341	244579341	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001126.2	-1	reviewed	p.T370	0.860	129	0%	103	27.2%	-	-	-	-	-	HMMPfam_Adenylsucc_synt,HMMSmart_SM00788,superfamily_P-loop containing nucleoside triphosphate hydrolases
LTBP1	4052	genome.wustl.edu	37	2	33614375	33614375	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_206943.2	+1	reviewed	e32+2	1.000	192	0%	201	20.4%	-	-	-	-	-	-
DHX57	90957	genome.wustl.edu	37	2	39090627	39090627	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198963.1	-1	provisional	p.R87C	0.460	308	0%	433	26.6%	-	-	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
SPTBN1	6711	genome.wustl.edu	37	2	54895587	54895587	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003128.2	+1	reviewed	p.A2326T	1.000	98	0%	82	23.2%	-	-	benign(0.004)	deleterious(0.01)	neutral(0.406)	NULL
CCDC85A	114800	genome.wustl.edu	37	2	56602995	56602995	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080433.1	+1	provisional	p.S499	1.000	132	0%	94	26.6%	-	-	-	-	-	NULL
GMCL1	64395	genome.wustl.edu	37	2	70070283	70070283	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178439.3	+1	provisional	p.D194	1.000	103	0%	137	24.8%	-	-	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DAPL1	92196	genome.wustl.edu	37	2	159718997	159718997	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000343761	+1	known	p.R101H	0.014	108	0%	89	33.7%	-	-	possibly_damaging(0.463)	tolerated(0.69)	neutral(0.154)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SCN1A	6323	genome.wustl.edu	37	2	166904218	166904218	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006920.4	-1	reviewed	p.T363	1.000	119	0%	173	27.7%	-	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
RAPGEF4	11069	genome.wustl.edu	37	2	173881932	173881932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007023.3	+1	validated	p.K643N	1.000	132	0%	154	19.5%	-	-	benign(0.013)	tolerated(0.13)	neutral(0.253)	superfamily_Ras GEF
NFE2L2	4780	genome.wustl.edu	37	2	178098969	178098969	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006164.3	-1	validated	p.Q26K	1.000	85	0%	85	22.4%	-	-	unknown(0)	deleterious(0)	-	NULL
COL5A2	1290	genome.wustl.edu	37	2	189944748	189944748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000393.3	-1	reviewed	p.G306C	1.000	102	0%	118	28%	-	-	unknown(0)	-	-	HMMPfam_Collagen
ANKRD44	91526	genome.wustl.edu	37	2	197943382	197943383	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000409153	-1	known	p.T566fs	0.000:0.001	-	-	-	-	-	-	-	-	-	superfamily_ANK
PIKFYVE	200576	genome.wustl.edu	37	2	209167079	209167079	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015040.3	+1	reviewed	e9+2	1.000	112	0%	140	26.4%	-	-	-	-	-	-
ASIC4	55515	genome.wustl.edu	37	2	220397179	220397179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018674.4	+1	reviewed	p.C460Y	1.000	26	0%	51	39.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ASC,PatternScan_ASC
DNER	92737	genome.wustl.edu	37	2	230411754	230411754	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_139072.3	-1	validated	p.V301A	1.000	180	0%	202	25.2%	-	-	possibly_damaging(0.6)	deleterious(0.01)	deleterious(0.613)	NULL
ALPP	250	genome.wustl.edu	37	2	233243529	233243531	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	TGC	TGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001632.3	+1	reviewed	p.L10in_frame_del	0.645:0.641:0.627	-	-	-	-	-	-	-	-	-	NULL
USP40	55230	genome.wustl.edu	37	2	234394542	234394542	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000454354	-1	known	p.T60M	0.122	11	0%	14	28.6%	-	-	-	-	-	NULL
CHL1	10752	genome.wustl.edu	37	3	405048	405048	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006614.2	+1	reviewed	p.A523T	0.994	193	0%	239	23.4%	-	-	benign(0.145)	tolerated(0.24)	neutral(0.050)	HMMSmart_SM00409,superfamily_Immunoglobulin
SLC4A7	9497	genome.wustl.edu	37	3	27475478	27475478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003615.3	-1	validated	p.R227Q	1.000	165	0%	211	21.3%	-	-	possibly_damaging(0.613)	tolerated(0.39)	neutral(0.228)	HMMPfam_Band_3_cyto,superfamily_Phoshotransferase/anion transport protein
CTNNB1	1499	genome.wustl.edu	37	3	41266101	41266101	+	Missense_Mutation	SNP	C	C	T	rs121913400	byCluster	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098209.1	+1	reviewed	p.S33F	1.000	55	0%	92	32.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MST1R	4486	genome.wustl.edu	37	3	49935008	49935008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002447.2	-1	validated	p.P664L	0.000	42	0%	33	27.3%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_TIG,HMMSmart_SM00429
PDHB	5162	genome.wustl.edu	37	3	58414340	58414340	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000925.3	-1	reviewed	p.V265A	1.000	113	0%	89	27%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Transketolase_C,superfamily_TK C-terminal domain-like
ATXN7	6314	genome.wustl.edu	37	3	63981736	63981736	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128149.2	+1	reviewed	p.Y746	0.981	166	0%	147	27.2%	-	-	-	-	-	NULL
CNTN3	5067	genome.wustl.edu	37	3	74316438	74316438	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020872.1	-1	validated	p.E932	1.000	130	0%	109	15.6%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CLDND1	56650	genome.wustl.edu	37	3	98237835	98237835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000503799	-1	known	p.I106V	1.000	96	0%	126	30.2%	-	-	unknown(0)	deleterious(0)	-	NULL
MYH15	22989	genome.wustl.edu	37	3	108224618	108224618	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014981.1	-1	validated	p.K69	0.931	253	0%	357	25.5%	-	-	-	-	-	HMMPfam_Myosin_N
BOC	91653	genome.wustl.edu	37	3	112989783	112989783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033254.2	+1	validated	p.R220H	1.000	113	0%	67	22.4%	-	-	probably_damaging(1)	tolerated(0.54)	deleterious(0.507)	HMMSmart_SM00409,HMMPfam_V-set
SPICE1	152185	genome.wustl.edu	37	3	113222068	113222068	+	Missense_Mutation	SNP	C	C	T	rs141190252	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144718.3	-1	validated	p.V36M	1.000	103	0%	149	24.8%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA1407	57577	genome.wustl.edu	37	3	113697767	113697767	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020817.1	-1	predicted	p.A800T	0.008	301	0%	445	26.7%	-	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	NULL
ADCY5	111	genome.wustl.edu	37	3	123047605	123047605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183357.1	-1	validated	p.G564E	1.000	76	0%	41	36.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
EEFSEC	60678	genome.wustl.edu	37	3	128060646	128060646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021937.3	+1	validated	p.G453R	1.000	44	0%	43	30.2%	-	-	probably_damaging(0.963)	tolerated(0.39)	neutral(0.422)	NULL
ACAD11	84129	genome.wustl.edu	37	3	132280029	132280029	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032169.4	-1	validated	p.R678	0.998	113	0%	130	28.5%	-	-	-	-	-	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
LRRC33	375387	genome.wustl.edu	37	3	196386688	196386688	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198565.1	+1	provisional	p.H58	0.000	23	0%	20	30%	-	-	-	-	-	superfamily_SSF52058
HTT	3064	genome.wustl.edu	37	4	3234946	3234946	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002111.6	+1	reviewed	p.S2774	1.000	42	0%	31	32.3%	-	-	-	-	-	NULL
TBC1D19	55296	genome.wustl.edu	37	4	26638864	26638864	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018317.2	+1	validated	p.L109*	1.000	196	0%	164	19.5%	-	-	-	-	-	NULL
KLF3	51274	genome.wustl.edu	37	4	38696440	38696440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_016531.5	+1	validated	p.R257W	1.000	188	0%	172	23.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2H2 and C2HC zinc fingers
SHISA3	152573	genome.wustl.edu	37	4	42403091	42403091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080505.1	+1	provisional	p.S114P	1.000	219	0%	227	30.4%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
LRRC66	339977	genome.wustl.edu	37	4	52861565	52861565	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001024611.1	-1	provisional	p.T541	0.000	283	0%	286	23.4%	-	-	-	-	-	NULL
PPEF2	5470	genome.wustl.edu	37	4	76813045	76813045	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006239.2	-1	reviewed	p.F48L	1.000	127	0%	131	23.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SHROOM3	57619	genome.wustl.edu	37	4	77661573	77661573	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020859.3	+1	validated	p.S749	0.000	34	0%	16	25%	-	-	-	-	-	NULL
MAPK10	5602	genome.wustl.edu	37	4	86938453	86938453	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138982.2	-1	reviewed	p.T441	0.653	124	0%	150	29.3%	-	-	-	-	-	NULL
SLC39A8	64116	genome.wustl.edu	37	4	103184333	103184335	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001135146.1	-1	reviewed	p.D417in_frame_del	0.699:0.971:0.977	-	-	-	-	-	-	-	-	-	HMMPfam_Zip
FAT4	79633	genome.wustl.edu	37	4	126372809	126372809	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024582.4	+1	validated	p.Y3546*	0.209	269	0%	273	23.8%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ZNF827	152485	genome.wustl.edu	37	4	146824171	146824171	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178835.3	-1	validated	p.T80	0.105	138	0%	135	30.4%	-	-	-	-	-	NULL
HMGB2	3148	genome.wustl.edu	37	4	174253279	174253279	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130688.1	-1	reviewed	p.E194	0.850	151	0%	142	23.9%	-	-	-	-	-	NULL
FAT1	2195	genome.wustl.edu	37	4	187524774	187524774	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005245.3	-1	reviewed	p.Q3636*	0.081	55	0%	58	31%	-	-	-	-	-	HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases
CCT5	22948	genome.wustl.edu	37	5	10262702	10262702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012073.3	+1	reviewed	p.A430V	1.000	181	0%	142	25.4%	-	-	possibly_damaging(0.714)	deleterious(0.02)	deleterious(0.641)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like
CTNND2	1501	genome.wustl.edu	37	5	11018172	11018172	+	Splice_Site	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001332.2	-1	validated	e18-2	1.000	103	0%	86	24.4%	-	-	-	-	-	-
WDR70	55100	genome.wustl.edu	37	5	37396643	37396645	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018034.2	+1	provisional	p.E158in_frame_del	0.995:0.988:0.979	-	-	-	-	-	-	-	-	-	superfamily_WD40_like
LIFR	3977	genome.wustl.edu	37	5	38510581	38510581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127671.1	-1	reviewed	p.V326I	0.974	138	0%	182	23.6%	-	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	superfamily_Fibronectin type III
PTGER4	5734	genome.wustl.edu	37	5	40681465	40681465	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000958.2	+1	reviewed	p.A124T	1.000	117	0%	122	11.5%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_7tm_1,superfamily_SSF81321
PPAP2A	8611	genome.wustl.edu	37	5	54737683	54737683	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_176895.1	-1	reviewed	p.V183A	1.000	341	0%	334	24.6%	-	-	benign(0.103)	deleterious(0.01)	neutral(0.414)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
IL6ST	3572	genome.wustl.edu	37	5	55247880	55247880	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002184.2	-1	reviewed	p.R526W	1.000	127	0%	129	27.9%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PIK3R1	5295	genome.wustl.edu	37	5	67589591	67589591	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.Y452N	1.000	98	0%	104	33.7%	-	-	probably_damaging(0.996)	deleterious(0.04)	deleterious(0.810)	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67589619	67589620	+	In_Frame_Ins	INS	-	-	AGA	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.463in_frame_insE	0.483:0.234	-	-	-	-	-	-	-	-	-	NULL
PIK3R1	5295	genome.wustl.edu	37	5	67590446	67590446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181523.1	+1	reviewed	p.R503Q	1.000	67	0%	95	31.6%	-	-	possibly_damaging(0.741)	tolerated(0.2)	neutral(0.321)	NULL
MARVELD2	153562	genome.wustl.edu	37	5	68715384	68715384	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001038603.2	+1	validated	p.G58S	1.000	120	0%	149	26.2%	-	-	unknown(0)	deleterious(0)	-	NULL
JMY	133746	genome.wustl.edu	37	5	78610354	78610354	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152405.4	+1	validated	p.L780P	0.992	274	0%	279	20.8%	-	-	benign(0.056)	deleterious(0)	neutral(0.448)	NULL
XRCC4	7518	genome.wustl.edu	37	5	82400876	82400876	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022406.2	+1	reviewed	p.T46	1.000	129	0%	157	25.5%	-	-	-	-	-	superfamily_XRCC4 N-terminal domain,HMMPfam_XRCC4
CAMK4	814	genome.wustl.edu	37	5	110819922	110819922	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001744.3	+1	reviewed	p.L394	0.538	106	0%	122	25.4%	-	-	-	-	-	NULL
DMXL1	1657	genome.wustl.edu	37	5	118576134	118576134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005509.4	+1	validated	p.T2870S	1.000	87	0%	136	19.1%	-	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1
IK	3550	genome.wustl.edu	37	5	140038908	140038908	+	Silent	SNP	C	C	T	rs190024283	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006083.3	+1	reviewed	p.D395	0.565	79	0%	152	21.1%	-	-	-	-	-	NULL
PCDHA7	56141	genome.wustl.edu	37	5	140214328	140214328	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018910.2	+1	reviewed	p.D120	0.998	129	0%	206	15.5%	-	-	-	-	-	HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB12	56124	genome.wustl.edu	37	5	140589966	140589966	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018932.3	+1	reviewed	p.P496L	0.000	142	0%	123	17.9%	-	-	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGB5	56101	genome.wustl.edu	37	5	140777975	140777975	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018925.2	+1	reviewed	p.E94G	0.999	105	0%	126	12.7%	-	-	-	-	-	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHGA11	56105	genome.wustl.edu	37	5	140801469	140801469	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018914.2	+1	reviewed	p.G225	0.005	114	0%	93	26.9%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FBXO38	81545	genome.wustl.edu	37	5	147807329	147807329	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_205836.1	+1	validated	p.G824	1.000	84	0%	71	26.8%	-	-	-	-	-	NULL
SLC36A1	206358	genome.wustl.edu	37	5	150844716	150844716	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_078483.2	+1	reviewed	p.H135	0.016	110	0%	119	26.1%	-	-	-	-	-	HMMPfam_Aa_trans
CYFIP2	26999	genome.wustl.edu	37	5	156766176	156766176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001037332.2	+1	validated	p.A833T	1.000	65	0%	45	22.2%	-	-	possibly_damaging(0.945)	deleterious(0.01)	deleterious(0.795)	HMMPfam_FragX_IP
GABRP	2568	genome.wustl.edu	37	5	170222322	170222322	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014211.2	+1	reviewed	p.V117	1.000	279	0%	282	27.7%	-	-	-	-	-	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
C6orf201	404220	genome.wustl.edu	37	6	4099331	4099331	+	Silent	SNP	G	G	A	rs147712155	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001085401.1	+1	validated	p.P61	0.001	179	0%	196	21.9%	-	-	-	-	-	NULL
GCM2	9247	genome.wustl.edu	37	6	10874580	10874580	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004752.3	-1	reviewed	p.S390Y	1.000	108	0%	119	26.1%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
SCAND3	114821	genome.wustl.edu	37	6	28543628	28543628	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052923.1	-1	provisional	p.E285V	1.000	193	0%	233	25.8%	-	-	probably_damaging(0.98)	tolerated(0.17)	deleterious(0.483)	NULL
GTF2H4	2968	genome.wustl.edu	37	6	30881097	30881097	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001517.4	+1	validated	p.L383	0.999	143	0%	141	26.2%	-	-	-	-	-	NULL
TNXB	7148	genome.wustl.edu	37	6	32020478	32020478	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_019105.6	-1	reviewed	p.R3026	0.021	67	0%	75	22.7%	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
ENSG00000248398	0	genome.wustl.edu	37	6	33650290	33650290	+	RNA	SNP	A	A	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000511225	-1	known	NULL	0.000	35	0%	26	19.2%	-	-	-	-	-	-
KCNK17	89822	genome.wustl.edu	37	6	39267316	39267316	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031460.3	-1	reviewed	p.R296W	0.000	161	0%	156	24.4%	-	-	possibly_damaging(0.922)	deleterious(0.01)	deleterious(0.777)	NULL
MOCS1	4337	genome.wustl.edu	37	6	39876849	39876849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001075098.3	-1	reviewed	p.R378W	1.000	54	0%	71	28.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF102114
ZNF318	24149	genome.wustl.edu	37	6	43325106	43325106	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014345.2	-1	validated	p.R316*	1.000	199	0%	178	20.2%	-	-	-	-	-	NULL
ABCC10	89845	genome.wustl.edu	37	6	43402404	43402404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033450.2	+1	reviewed	p.G433R	0.967	160	0%	110	23.6%	-	-	benign(0.005)	tolerated(0.29)	neutral(0.029)	HMMPfam_ABC_membrane,superfamily_ABC_TM_1
GSTA2	2939	genome.wustl.edu	37	6	52617767	52617767	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000846.4	-1	reviewed	p.A100V	0.015	440	0%	519	27%	-	-	benign(0.003)	tolerated(0.29)	neutral(0.029)	HMMPfam_GST_C,superfamily_GST_C_like
LAMA4	3910	genome.wustl.edu	37	6	112435280	112435280	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105206.1	-1	reviewed	p.P1775	1.000	238	0%	323	23.2%	-	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
TRMT11	60487	genome.wustl.edu	37	6	126332561	126332561	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001031712.2	+1	validated	p.D308V	1.000	116	0%	95	21.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0020,PatternScan_N6_MTASE,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
ABCB5	340273	genome.wustl.edu	37	7	20691218	20691218	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178559.5	+1	validated	p.A58V	1.000	233	0.4%	241	23.7%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GLI3	2737	genome.wustl.edu	37	7	42004666	42004666	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000168.5	-1	reviewed	p.P1335	0.992	48	0%	36	41.7%	-	-	-	-	-	NULL
HECW1	23072	genome.wustl.edu	37	7	43484937	43484937	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015052.3	+1	validated	p.V722	0.992	74	0%	34	26.5%	-	-	-	-	-	NULL
URGCP	55665	genome.wustl.edu	37	7	43917299	43917299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001077663.1	-1	validated	p.T588M	0.977	60	0%	48	27.1%	-	-	benign(0.004)	tolerated(0.13)	neutral(0.253)	NULL
ABCA13	154664	genome.wustl.edu	37	7	48450181	48450181	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000453246	+1	known	p.R311C	0.047	268	0%	206	26.2%	-	-	-	-	-	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
PCLO	27445	genome.wustl.edu	37	7	82584314	82584314	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033026.5	-1	validated	p.Q1985	0.943	595	0.2%	735	18.9%	-	-	-	-	-	NULL
DMTF1	9988	genome.wustl.edu	37	7	86823243	86823243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142327.1	+1	reviewed	p.H618R	0.984	151	0%	163	22.1%	-	-	benign(0)	tolerated(0.48)	neutral(0.011)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88966032	88966032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_181646.2	+1	provisional	p.I1246V	0.039	315	0%	314	21%	-	-	benign(0.006)	deleterious(0.02)	neutral(0.383)	NULL
LMTK2	22853	genome.wustl.edu	37	7	97823413	97823413	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014916.3	+1	reviewed	p.G1212	0.000	27	0%	30	33.3%	-	-	-	-	-	NULL
TRRAP	8295	genome.wustl.edu	37	7	98513428	98513428	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003496.2	+1	validated	p.R761L	1.000	102	0%	120	19.2%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	superfamily_ARM repeat
ZSCAN21	7589	genome.wustl.edu	37	7	99661471	99661471	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145914.2	+1	validated	p.E218V	0.080	211	0%	209	21.1%	-	-	benign(0.141)	tolerated(0.24)	neutral(0.050)	NULL
ZNF3	7551	genome.wustl.edu	37	7	99668869	99668869	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032924.3	-1	validated	p.R413H	0.965	115	0.9%	123	26%	-	-	probably_damaging(0.993)	deleterious(0.05)	deleterious(0.795)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
RELN	5649	genome.wustl.edu	37	7	103244841	103244841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005045.3	-1	reviewed	p.C1033Y	1.000	117	0%	121	14.9%	-	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMPfam_EGF_2
IRF5	3663	genome.wustl.edu	37	7	128586057	128586057	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098629.1	+1	reviewed	p.Y118	1.000	55	0%	20	20%	-	-	-	-	-	HMMPfam_IRF,HMMSmart_IRF,superfamily_SSF46785
OR2F1	26211	genome.wustl.edu	37	7	143657291	143657291	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012369.2	+1	provisional	p.S76	0.001	593	0%	530	23%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR2A5	393046	genome.wustl.edu	37	7	143747686	143747686	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012365.1	+1	provisional	p.H64	0.955	344	0%	377	20.7%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF786	136051	genome.wustl.edu	37	7	148768291	148768291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152411.3	-1	validated	p.R525C	0.001	21	0%	16	31.2%	-	-	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SGK223	157285	genome.wustl.edu	37	8	8185588	8185588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080826.1	-1	validated	p.G902S	0.000	108	0%	59	18.6%	-	-	probably_damaging(0.975)	tolerated(0.29)	neutral(0.446)	NULL
RP1L1	94137	genome.wustl.edu	37	8	10468375	10468375	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178857.5	-1	validated	p.R1078Q	0.001	17	0%	18	38.9%	-	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	NULL
SLC7A2	6542	genome.wustl.edu	37	8	17401002	17401002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003046.5	+1	validated	p.V92F	1.000	60	0%	85	27.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BMP1	649	genome.wustl.edu	37	8	22037927	22037927	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006129.4	+1	reviewed	p.P336	0.004	278	0.4%	231	15.2%	-	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KIAA1967	57805	genome.wustl.edu	37	8	22473255	22473255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_021174.4	+1	validated	p.R480W	0.986	41	0%	61	21.3%	-	-	benign(0.346)	tolerated(0.18)	neutral(0.166)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77768157	77768157	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.G2955	0.965	122	0%	145	19.3%	-	-	-	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77776582	77776582	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024721.4	+1	validated	p.S3499	1.000	195	0%	230	18.7%	-	-	-	-	-	NULL
MMP16	4325	genome.wustl.edu	37	8	89068387	89068387	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005941.4	-1	reviewed	p.V448I	1.000	158	0%	195	19.5%	-	-	possibly_damaging(0.762)	tolerated(0.08)	deleterious(0.583)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
OSR2	116039	genome.wustl.edu	37	8	99961711	99961711	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142462.1	+1	validated	p.C177	1.000	262	0.4%	244	18.4%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CSMD3	114788	genome.wustl.edu	37	8	113504823	113504823	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198123.1	-1	validated	p.Y1725H	1.000	213	0%	260	18.8%	-	-	probably_damaging(0.962)	tolerated(0.06)	deleterious(0.728)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
ASAP1	50807	genome.wustl.edu	37	8	131149208	131149208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_018482.2	-1	validated	p.D386G	1.000	143	0%	294	16%	-	-	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
LRRC6	23639	genome.wustl.edu	37	8	133637545	133637545	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012472.3	-1	provisional	p.K270R	1.000	281	0%	312	19.6%	-	-	benign(0.122)	tolerated(0.61)	neutral(0.014)	NULL
TG	7038	genome.wustl.edu	37	8	133885382	133885382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.A185V	0.004	57	0%	75	25.3%	-	-	benign(0.15)	deleterious(0.04)	neutral(0.362)	superfamily_Thyroglobulin type-1 domain
TG	7038	genome.wustl.edu	37	8	133899033	133899033	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003235.4	+1	reviewed	p.F472	1.000	202	0%	228	21.5%	-	-	-	-	-	NULL
ST3GAL1	6482	genome.wustl.edu	37	8	134474160	134474160	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003033.3	-1	reviewed	p.T269	0.889	78	0%	101	14.9%	-	-	-	-	-	HMMPfam_Glyco_transf_29
FAM135B	51059	genome.wustl.edu	37	8	139163912	139163912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015912.3	-1	validated	p.E936K	0.833	279	0%	355	17.5%	-	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	NULL
GLI4	2738	genome.wustl.edu	37	8	144351572	144351572	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_138465.3	+1	validated	p.A2	0.376	62	0%	43	14%	-	-	-	-	-	NULL
SNAPC3	6619	genome.wustl.edu	37	9	15453143	15453143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039697.1	+1	validated	p.F307Y	1.000	197	0%	197	24.4%	-	-	benign(0.015)	tolerated(1)	neutral(0.001)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20912872	20912872	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017794.3	+1	validated	p.L909P	0.984	136	0%	142	21.8%	-	-	benign(0.011)	tolerated(0.12)	neutral(0.261)	superfamily_ARM-type_fold
LOC730110	730110	genome.wustl.edu	37	9	35148362	35148362	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002342891.1	-1	model	p.T274S	0.001	117	0%	174	24.1%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC35D2	11046	genome.wustl.edu	37	9	99086398	99086398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007001.2	-1	validated	p.T269M	0.994	142	0%	169	23.1%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_TPT
SVEP1	79987	genome.wustl.edu	37	9	113170657	113170657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_153366.3	-1	validated	p.C2408Y	1.000	77	0%	98	37.8%	-	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
PSMD5	5711	genome.wustl.edu	37	9	123580190	123580190	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005047.2	-1	reviewed	p.A503	0.590	173	0%	218	19.7%	-	-	-	-	-	HMMPfam_Proteasom_PSMB
STXBP1	6812	genome.wustl.edu	37	9	130444789	130444789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003165.3	+1	reviewed	p.R551H	1.000	50	0%	36	22.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sec1,superfamily_Sec1/munc18-like (SM) proteins
DBH	1621	genome.wustl.edu	37	9	136508677	136508677	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000787.3	+1	reviewed	p.R296H	1.000	37	0%	26	26.9%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Cu2_monooxygen,superfamily_PHM_PNGase_F
PPP1R26	9858	genome.wustl.edu	37	9	138377292	138377292	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014811.3	+1	validated	p.T312	0.001	51	0%	28	25%	-	-	-	-	-	NULL
CREM	1390	genome.wustl.edu	37	10	35500202	35500202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_183011.1	+1	reviewed	p.R259H	1.000	74	0%	88	25%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
RET	5979	genome.wustl.edu	37	10	43597795	43597795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020975.4	+1	reviewed	p.G115S	0.967	56	0%	58	22.4%	-	-	benign(0.043)	tolerated(0.55)	neutral(0.009)	NULL
MARCH8	220972	genome.wustl.edu	37	10	45959741	45959741	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002265.1	-1	validated	p.P63L	1.000	106	0%	115	27.8%	-	-	benign(0.007)	tolerated(0.19)	neutral(0.050)	superfamily_SSF57850
PCDH15	65217	genome.wustl.edu	37	10	55566836	55566836	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142771.1	-1	reviewed	p.S1518P	1.000	109	0%	135	24.4%	-	-	possibly_damaging(0.846)	deleterious(0)	deleterious(0.770)	NULL
PCDH15	65217	genome.wustl.edu	37	10	55973760	55973760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001142763.1	-1	reviewed	p.A350V	1.000	129	0%	133	25.6%	-	-	probably_damaging(0.998)	tolerated(0.14)	deleterious(0.724)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ARID5B	84159	genome.wustl.edu	37	10	63850751	63850761	+	Frame_Shift_Del	DEL	CCAGAGTAGAC	CCAGAGTAGAC	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	CCAGAGTAGAC	CCAGAGTAGAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032199.2	+1	validated	p.V512fs	0.022:0.001:0.004:0.535:0.612:0.650:0.987:0.989:0.999:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ZNF365	22891	genome.wustl.edu	37	10	64136198	64136198	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_199451.2	+1	reviewed	p.P82	0.996	56	0%	60	33.3%	-	-	-	-	-	NULL
SLC25A16	8034	genome.wustl.edu	37	10	70263436	70263436	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152707.2	-1	reviewed	p.L125P	1.000	87	0%	120	28.3%	-	-	possibly_damaging(0.673)	deleterious(0.02)	deleterious(0.622)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
NDST2	8509	genome.wustl.edu	37	10	75567737	75567737	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003635.3	-1	reviewed	p.L137S	1.000	163	0%	103	26.2%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MAT1A	4143	genome.wustl.edu	37	10	82043688	82043688	+	Silent	SNP	G	G	A	rs184358377	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000429.2	-1	reviewed	p.Y92	0.067	70	0%	51	23.5%	-	-	-	-	-	HMMPfam_S-AdoMet_synt_N,superfamily_S-AdoMet_synt
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	A	rs121913292		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.R130Q	1.000	258	0%	318	24.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89717729	89717729	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000371953	+1	known	p.D252Y	1.000	340	0%	306	21.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ANKRD22	118932	genome.wustl.edu	37	10	90591777	90591777	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144590.2	-1	validated	p.C10R	1.000	386	0%	370	15.4%	-	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_Ankyrin repeat
CNNM2	54805	genome.wustl.edu	37	10	104809596	104809596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017649.3	+1	validated	p.T585I	1.000	133	0%	105	21%	-	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
SH3PXD2A	9644	genome.wustl.edu	37	10	105363177	105363177	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014631.2	-1	validated	p.R572W	1.000	107	0%	77	23.4%	-	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
RAB11FIP2	22841	genome.wustl.edu	37	10	119799986	119799986	+	Silent	SNP	G	G	A	rs188765663	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014904.2	-1	validated	p.T148	0.997	104	0%	122	29.5%	-	-	-	-	-	NULL
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022970.3	-1	reviewed	p.S252W	1.000	65	0%	81	28.4%	-	-	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
ZNF195	7748	genome.wustl.edu	37	11	3392255	3392255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001130520.1	-1	validated	p.R59Q	0.000	364	0%	321	12.5%	-	-	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
FAM160A2	84067	genome.wustl.edu	37	11	6233053	6233053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032127.3	-1	validated	p.A882T	0.998	236	0%	226	22.6%	-	-	benign(0.004)	tolerated(0.47)	neutral(0.011)	NULL
DCHS1	8642	genome.wustl.edu	37	11	6662451	6662451	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003737.2	-1	reviewed	p.R132*	0.994	44	0%	39	23.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DENND5A	23258	genome.wustl.edu	37	11	9165706	9165706	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015213.2	-1	validated	p.P1081L	0.998	101	0%	74	25.7%	-	-	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	NULL
DCDC5	100506627	genome.wustl.edu	37	11	30902833	30902833	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343054.1	-1	model	p.R936H	0.659	115	0%	120	23.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DCX,HMMSmart_SM00537,superfamily_Doublecortin (DC)
ENSG00000186082	0	genome.wustl.edu	37	11	35882686	35882686	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000333983	-1	known	p.E123K	1.000	110	0%	116	23.3%	-	-	-	-	-	HMMPfam_Filament
OSBP	5007	genome.wustl.edu	37	11	59344146	59344146	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002556.2	-1	reviewed	p.K776N	1.000	436	0%	506	21.1%	-	-	benign(0.051)	tolerated(0.27)	neutral(0.037)	HMMPfam_Oxysterol_BP
AHNAK	79026	genome.wustl.edu	37	11	62289296	62289296	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.M4198T	1.000	645	0.2%	428	23.8%	-	-	possibly_damaging(0.945)	deleterious(0.04)	deleterious(0.738)	NULL
AHNAK	79026	genome.wustl.edu	37	11	62301509	62301509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001620.1	-1	validated	p.T127M	0.999	39	0%	25	20%	-	-	probably_damaging(0.969)	deleterious(0.03)	deleterious(0.776)	NULL
EML3	256364	genome.wustl.edu	37	11	62370707	62370707	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394776	-1	known	p.W751*	0.971	38	0%	32	21.9%	-	-	benign(0.017)	tolerated(0.62)	neutral(0.005)	NULL
FRMD8	83786	genome.wustl.edu	37	11	65168208	65168208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_031904.3	+1	validated	p.G314D	1.000	11	0%	21	33.3%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
DPP3	10072	genome.wustl.edu	37	11	66262679	66262679	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005700.3	+1	reviewed	p.D464	1.000	52	0%	46	26.1%	-	-	-	-	-	HMMPfam_Peptidase_M49
IGHMBP2	3508	genome.wustl.edu	37	11	68704310	68704310	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002180.2	+1	reviewed	p.R788*	0.000	24	0%	19	31.6%	-	-	-	-	-	NULL
GAB2	9846	genome.wustl.edu	37	11	77932791	77932791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080491.2	-1	reviewed	p.R565C	1.000	114	0%	53	22.6%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
ODZ4	26011	genome.wustl.edu	37	11	78380542	78380542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001098816.2	-1	validated	p.R2283Q	1.000	194	0%	85	27.1%	-	-	benign(0.047)	deleterious(0.01)	neutral(0.409)	HMMPfam_RHS_repeat
ANKRD42	338699	genome.wustl.edu	37	11	82959023	82959023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_182603.2	+1	validated	p.D384Y	1.000	106	0%	93	23.7%	-	-	possibly_damaging(0.92)	deleterious(0.03)	deleterious(0.736)	NULL
PICALM	8301	genome.wustl.edu	37	11	85733485	85733485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007166.2	-1	validated	p.R126Q	1.000	253	0%	248	20.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ENTH/VHS domain,HMMPfam_ANTH,HMMSmart_SM00273
FAT3	120114	genome.wustl.edu	37	11	92577532	92577532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001008781.2	+1	validated	p.H3667Y	1.000	67	0%	63	30.2%	-	-	possibly_damaging(0.925)	deleterious(0)	deleterious(0.818)	superfamily_Concanavalin A-like lectins/glucanases
BIRC2	329	genome.wustl.edu	37	11	102221477	102221477	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001166.3	+1	reviewed	p.V298M	1.000	381	0%	276	19.9%	-	-	benign(0.023)	tolerated(0.11)	neutral(0.273)	HMMPfam_BIR,HMMSmart_BIR,PatternScan_BIR_REPEAT_1,superfamily_SSF57924
MLL	4297	genome.wustl.edu	37	11	118371776	118371776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005933.2	+1	validated	p.R2075H	1.000	127	0%	145	29%	-	-	probably_damaging(0.999)	-	-	NULL
OR10G8	219869	genome.wustl.edu	37	11	123901198	123901198	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001004464.1	+1	provisional	p.R290M	1.000	283	0%	290	22.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
KIRREL3	84623	genome.wustl.edu	37	11	126314880	126314880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032531.3	-1	reviewed	p.V416I	1.000	49	0%	44	22.7%	-	-	possibly_damaging(0.751)	tolerated(0.08)	deleterious(0.576)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
VPS26B	112936	genome.wustl.edu	37	11	134110010	134110010	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052875.3	+1	validated	p.E169G	1.000	205	0%	202	29.2%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Vps26
PTMS	5763	genome.wustl.edu	37	12	6879359	6879359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002824.4	+1	validated	p.A78V	1.000	119	0%	59	22%	-	-	unknown(0)	-	-	HMMPfam_Prothymosin
SLC38A4	55089	genome.wustl.edu	37	12	47172402	47172402	+	Missense_Mutation	SNP	C	C	T	rs189669525	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001143824.1	-1	validated	p.R292H	0.000	180	0%	129	19.4%	-	-	benign(0)	tolerated(0.12)	neutral(0.261)	HMMPfam_Aa_trans
MLL2	8085	genome.wustl.edu	37	12	49421001	49421001	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003482.3	-1	validated	p.P4916	0.780	63	0%	43	32.6%	-	-	-	-	-	NULL
KCNH3	23416	genome.wustl.edu	37	12	49935492	49935492	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012284.1	+1	validated	p.H130	1.000	124	0%	50	34%	-	-	-	-	-	HMMSmart_PAC,HMMPfam_PAS,superfamily_SSF55785
XPOT	11260	genome.wustl.edu	37	12	64827364	64827364	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007235.3	+1	reviewed	p.S811	0.809	182	0%	202	21.3%	-	-	-	-	-	superfamily_ARM-type_fold
MDM1	56890	genome.wustl.edu	37	12	68715185	68715185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017440.4	-1	reviewed	p.A316V	1.000	111	0%	116	10.3%	-	-	possibly_damaging(0.767)	tolerated(0.07)	deleterious(0.603)	NULL
OTOGL	283310	genome.wustl.edu	37	12	80613571	80613573	+	In_Frame_Del	DEL	TTT	TTT	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343203.1	+1	model	p.F16in_frame_del	0.783:0.235:0.100	-	-	-	-	-	-	-	-	-	NULL
MYBPC1	4604	genome.wustl.edu	37	12	101988851	101988851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.M1I	1.000	71	0%	67	25.4%	-	-	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
MYBPC1	4604	genome.wustl.edu	37	12	102067349	102067349	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002465.2	+1	validated	p.V920I	1.000	243	0%	253	23.7%	-	-	benign(0.292)	tolerated(0.07)	neutral(0.409)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
PWP1	11137	genome.wustl.edu	37	12	108093183	108093183	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007062.1	+1	provisional	p.L260I	1.000	214	0%	220	22.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
OAS1	4938	genome.wustl.edu	37	12	113354429	113354429	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032409.1	+1	reviewed	p.T257M	0.000	264	0%	297	23.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain
BRCA2	675	genome.wustl.edu	37	13	32972645	32972645	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000059.3	+1	reviewed	p.S3332Y	0.000	213	0%	131	31.3%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PDS5B	23047	genome.wustl.edu	37	13	33268398	33268398	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015032.3	+1	reviewed	p.R503Q	1.000	217	0%	236	28%	-	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	superfamily_ARM repeat
FOXO1	2308	genome.wustl.edu	37	13	41133865	41133865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002015.3	-1	reviewed	p.G588D	1.000	153	0.7%	139	27.3%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	NULL
ENOX1	55068	genome.wustl.edu	37	13	43900589	43900589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001127615.1	-1	validated	p.R370H	1.000	124	0%	162	17.9%	-	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
WDFY2	115825	genome.wustl.edu	37	13	52325482	52325482	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052950.3	+1	reviewed	p.T254	0.013	73	0%	87	19.5%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
CLN5	1203	genome.wustl.edu	37	13	77574678	77574678	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006493.2	+1	reviewed	p.S266	1.000	107	0%	131	29%	-	-	-	-	-	NULL
MIR622	693207	genome.wustl.edu	37	13	90883508	90883508	+	RNA	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000385123	+1	known	NULL	0.068	55	0%	69	29%	-	-	-	-	-	-
STK24	8428	genome.wustl.edu	37	13	99114047	99114047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003576.3	-1	validated	p.S357L	0.028	170	0%	208	24.5%	-	-	benign(0)	tolerated(0.19)	neutral(0.050)	NULL
TEP1	7011	genome.wustl.edu	37	14	20841456	20841456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_007110.4	-1	reviewed	p.R2263W	0.019	115	0%	114	24.6%	-	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
OSGEP	55644	genome.wustl.edu	37	14	20917379	20917379	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017807.2	-1	validated	p.I153T	1.000	213	0.5%	252	23.8%	-	-	possibly_damaging(0.904)	deleterious(0)	deleterious(0.803)	HMMPfam_Peptidase_M22,superfamily_SSF53067
LOC100288922	100288922	genome.wustl.edu	37	14	23886164	23886164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_002343268.1	+1	model	p.A178T	0.000	133	0%	113	19.5%	-	-	-	-	-	NULL
CLEC14A	161198	genome.wustl.edu	37	14	38724727	38724727	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_175060.1	-1	provisional	p.N167	0.152	54	0%	28	25%	-	-	-	-	-	HMMSmart_CLECT,superfamily_C-type_lectin_fold
FANCM	57697	genome.wustl.edu	37	14	45667941	45667941	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020937.2	+1	reviewed	p.C1937	1.000	226	0%	223	23.3%	-	-	possibly_damaging(0.482)	tolerated(0.24)	neutral(0.198)	superfamily_Restriction endonuclease-like
ARG2	384	genome.wustl.edu	37	14	68112429	68112429	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001172.3	+1	reviewed	p.A144	0.990	100	0%	95	28.4%	-	-	-	-	-	HMMPfam_Arginase,PatternScan_ARGINASE_2,superfamily_Arginase/deacetylase
ZFYVE26	23503	genome.wustl.edu	37	14	68249647	68249647	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015346.3	-1	reviewed	p.I1408V	0.000	198	0%	178	26.4%	-	-	benign(0)	tolerated(1)	-	NULL
PNMA1	9240	genome.wustl.edu	37	14	74180253	74180253	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006029.4	-1	validated	p.C30	1.000	115	0%	128	24.2%	-	-	-	-	-	NULL
DLK1	8788	genome.wustl.edu	37	14	101201015	101201015	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003836.5	+1	reviewed	p.V312M	0.925	92	0%	90	21.1%	-	-	possibly_damaging(0.929)	deleterious(0.01)	deleterious(0.782)	NULL
MARK3	4140	genome.wustl.edu	37	14	103932314	103932315	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001128918.1	+1	validated	p.R264fs	0.999:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OCA2	4948	genome.wustl.edu	37	15	28202862	28202862	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000275.2	-1	reviewed	p.H552	0.319	44	0%	59	23.7%	-	-	-	-	-	HMMPfam_CitMHS
HERC2	8924	genome.wustl.edu	37	15	28389028	28389028	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004667.4	-1	reviewed	p.T3803	0.022	208	0%	227	22.9%	-	-	-	-	-	NULL
TMOD3	29766	genome.wustl.edu	37	15	52192449	52192449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014547.4	+1	validated	p.A278V	1.000	95	0%	92	33.7%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tropomodulin,superfamily_SSF52047
SIN3A	25942	genome.wustl.edu	37	15	75684761	75684763	+	In_Frame_Del	DEL	GTT	GTT	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	GTT	GTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.N891in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SIN3A	25942	genome.wustl.edu	37	15	75706615	75706615	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001145357.1	-1	reviewed	p.L135P	1.000	77	0%	94	25.5%	-	-	probably_damaging(0.991)	deleterious(0.05)	deleterious(0.789)	superfamily_PAH
SV2B	9899	genome.wustl.edu	37	15	91769694	91769694	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014848.4	+1	validated	p.A67	0.000	109	0%	70	34.3%	-	-	-	-	-	NULL
LRRK1	79705	genome.wustl.edu	37	15	101549158	101549158	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024652.3	+1	validated	p.L293	0.298	68	0%	49	24.5%	-	-	-	-	-	HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like
WDR90	197335	genome.wustl.edu	37	16	709252	709252	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_145294.4	+1	provisional	p.A1021fs	0.000	-	-	-	-	-	-	-	-	-	NULL
MEFV	4210	genome.wustl.edu	37	16	3293384	3293384	+	Silent	SNP	C	C	T	rs104895095		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000243.2	-1	reviewed	p.A701	0.000	56	0%	106	26.4%	-	-	-	-	-	HMMPfam_SPRY,HMMSmart_SM00449
RSPRY1	89970	genome.wustl.edu	37	16	57246987	57246987	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133368.1	+1	provisional	p.G207D	1.000	170	0%	158	26.6%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
GPR97	222487	genome.wustl.edu	37	16	57713197	57713197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_170776.4	+1	validated	p.V201I	1.000	131	0%	139	28.1%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
MMP15	4324	genome.wustl.edu	37	16	58073998	58073998	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002428.2	+1	reviewed	p.A220	0.902	22	0%	17	29.4%	-	-	-	-	-	HMMPfam_Peptidase_M10,HMMSmart_ZnMc,superfamily_SSF55486
CTCF	10664	genome.wustl.edu	37	16	67646013	67646014	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006565.2	+1	reviewed	p.T317fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
RANBP10	57610	genome.wustl.edu	37	16	67763215	67763215	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020850.1	-1	provisional	p.Q440H	1.000	40	0%	45	13.3%	-	-	possibly_damaging(0.861)	tolerated(0.34)	neutral(0.356)	NULL
LCAT	3931	genome.wustl.edu	37	16	67974002	67974002	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000229.1	-1	reviewed	p.S376	0.986	19	0%	28	53.6%	-	-	-	-	-	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases
CFDP1	10428	genome.wustl.edu	37	16	75339062	75339062	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006324.2	-1	validated	p.G223	1.000	277	0%	307	21.5%	-	-	-	-	-	HMMPfam_BCNT
MNT	4335	genome.wustl.edu	37	17	2290573	2290573	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020310.2	-1	reviewed	p.H457	0.812	30	0%	26	30.8%	-	-	-	-	-	NULL
ZNF594	84622	genome.wustl.edu	37	17	5086202	5086202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032530.1	-1	validated	p.H450Q	0.046	274	0%	367	23.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
DHX33	56919	genome.wustl.edu	37	17	5347717	5347717	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020162.2	-1	reviewed	p.T644	0.991	25	0%	43	27.9%	-	-	-	-	-	HMMPfam_DUF1605
NEURL4	84461	genome.wustl.edu	37	17	7222518	7222518	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032442.2	-1	validated	p.D1179Y	1.000	57	0%	42	11.9%	-	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	HMMPfam_Neuralized,HMMSmart_SM00588
TP53	7157	genome.wustl.edu	37	17	7577586	7577586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000546.4	-1	reviewed	p.I232T	1.000	84	0%	119	21%	-	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	superfamily_p53-like transcription factors,HMMPfam_P53
PFAS	5198	genome.wustl.edu	37	17	8170105	8170105	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012393.2	+1	reviewed	p.L952	1.000	35	0%	26	19.2%	-	-	-	-	-	HMMPfam_AIRS_C,superfamily_PurM C-terminal domain-like
SLC5A10	125206	genome.wustl.edu	37	17	18918442	18918442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152351.3	+1	validated	p.L407I	0.995	59	0%	54	20.4%	-	-	possibly_damaging(0.927)	tolerated(0.56)	neutral(0.382)	HMMPfam_SSF
KSR1	8844	genome.wustl.edu	37	17	25877651	25877651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000268763	+1	known	p.G20S	0.008	267	0.4%	161	20.5%	-	-	benign(0)	tolerated(0.36)	neutral(0.020)	NULL
ALDOC	230	genome.wustl.edu	37	17	26900565	26900565	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_005165.2	-1	reviewed	p.Y358	0.986	91	0%	80	28.7%	-	-	-	-	-	HMMPfam_Glycolytic,superfamily_Aldolase
FLOT2	2319	genome.wustl.edu	37	17	27208928	27208928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004475.2	-1	reviewed	p.Q273R	1.000	38	0%	42	23.8%	-	-	benign(0.001)	tolerated(0.05)	neutral(0.345)	NULL
GGNBP2	79893	genome.wustl.edu	37	17	34934502	34934502	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024835.2	+1	validated	p.A244V	1.000	160	0%	215	20.9%	-	-	probably_damaging(0.963)	deleterious(0.03)	deleterious(0.770)	NULL
KRTAP4-1	85285	genome.wustl.edu	37	17	39340854	39340854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000398472	-1	known	p.R85C	0.964	51	0%	50	28%	-	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Keratin_B2
HAP1	9001	genome.wustl.edu	37	17	39881134	39881134	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_177977.2	-1	reviewed	p.L560P	1.000	147	0%	177	24.9%	-	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42580729	42580729	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001002909.1	-1	validated	p.R4C	1.000	15	0%	18	33.3%	-	-	unknown(0)	deleterious(0)	-	NULL
GFAP	2670	genome.wustl.edu	37	17	42990697	42990697	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_002055.3	-1	reviewed	p.T240	0.006	112	0%	105	21.9%	-	-	-	-	-	HMMPfam_Filament
NFE2L1	4779	genome.wustl.edu	37	17	46136840	46136842	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003204.2	+1	validated	p.E720in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CCDC40	55036	genome.wustl.edu	37	17	78021186	78021186	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_017950.2	+1	validated	p.V221L	0.000	10	0%	14	35.7%	-	-	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
CLUL1	27098	genome.wustl.edu	37	18	618041	618041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_014410.4	+1	validated	p.W14L	0.526	70	0%	69	21.7%	-	-	possibly_damaging(0.807)	tolerated(0.43)	neutral(0.318)	HMMPfam_Clusterin
SOGA2	23255	genome.wustl.edu	37	18	8783858	8783858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015210.3	+1	predicted	p.G250S	1.000	51	0%	65	27.7%	-	-	benign(0.097)	tolerated(0.32)	neutral(0.032)	NULL
POTEC	388468	genome.wustl.edu	37	18	14524957	14524957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001137671.1	-1	validated	p.E384D	0.163	164	0%	119	21.8%	-	-	probably_damaging(0.99)	tolerated(0.24)	deleterious(0.479)	NULL
ASXL3	80816	genome.wustl.edu	37	18	31324508	31324508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_030632.1	+1	provisional	p.P1566S	0.437	22	0%	35	37.1%	-	-	benign(0.029)	deleterious(0)	neutral(0.446)	NULL
MYO5B	4645	genome.wustl.edu	37	18	47500857	47500857	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001080467.2	-1	reviewed	p.Q395	1.000	291	0%	284	26.1%	-	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MBD1	4152	genome.wustl.edu	37	18	47803504	47803504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015846.3	-1	reviewed	p.L61I	1.000	107	0%	66	21.2%	-	-	probably_damaging(0.983)	deleterious(0.02)	deleterious(0.812)	HMMPfam_MBD,HMMSmart_SM00391,superfamily_DNA-binding domain
ZNF557	79230	genome.wustl.edu	37	19	7083282	7083282	+	Missense_Mutation	SNP	C	C	T	rs190142455	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001044387.1	+1	validated	p.R274C	0.065	145	0%	141	22.7%	-	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MUC16	94025	genome.wustl.edu	37	19	9004910	9004910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.P13303L	0.000	58	0%	75	25.3%	-	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
MUC16	94025	genome.wustl.edu	37	19	9068790	9068790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024690.2	-1	validated	p.N6219I	0.001	283	0%	530	24.3%	-	-	unknown(0)	-	-	NULL
OR7G1	125962	genome.wustl.edu	37	19	9225896	9225896	+	Missense_Mutation	SNP	C	C	T	rs147939135	by1000genomes	TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001005192.1	-1	provisional	p.V182I	0.000	257	0%	400	26%	-	-	benign(0.004)	tolerated(0.25)	neutral(0.037)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ZNF699	374879	genome.wustl.edu	37	19	9406689	9406689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198535.1	-1	provisional	p.A464V	0.000	124	0%	204	20.6%	-	-	probably_damaging(0.993)	tolerated(0.36)	deleterious(0.470)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CLEC17A	388512	genome.wustl.edu	37	19	14694191	14694191	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_207390.2	+1	validated	p.E22D	0.000	62	0%	88	12.5%	-	-	unknown(0)	deleterious(0)	-	NULL
MYO9B	4650	genome.wustl.edu	37	19	17270248	17270248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004145.3	+1	reviewed	p.T458M	1.000	31	0%	20	20%	-	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
RHPN2	85415	genome.wustl.edu	37	19	33471155	33471157	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	TTA	TTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.N602in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_PDZ
RHPN2	85415	genome.wustl.edu	37	19	33535170	33535170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033103.4	-1	reviewed	p.A57V	1.000	111	0%	150	26%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HR1,HMMSmart_Hr1,superfamily_PKN_effector
CEBPG	1054	genome.wustl.edu	37	19	33870519	33870519	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001806.2	+1	reviewed	p.H125R	1.000	45	0%	49	32.7%	-	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
ZFP82	284406	genome.wustl.edu	37	19	36883961	36883961	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_133466.2	-1	provisional	p.C427	0.998	328	0%	459	35.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C19orf47	126526	genome.wustl.edu	37	19	40829936	40829936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178830.2	-1	predicted	p.A184S	1.000	147	0%	170	24.1%	-	-	possibly_damaging(0.903)	tolerated(0.76)	neutral(0.359)	NULL
CCDC97	90324	genome.wustl.edu	37	19	41825633	41825633	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_052848.1	+1	provisional	p.P219	0.768	119	0%	121	34.7%	-	-	-	-	-	HMMPfam_DUF2052
CKM	1158	genome.wustl.edu	37	19	45810871	45810871	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001824.2	-1	reviewed	p.M272T	1.000	49	0%	31	29%	-	-	benign(0.17)	tolerated(0.05)	neutral(0.361)	HMMPfam_ATP-gua_Ptrans,superfamily_SSF55931
CPT1C	126129	genome.wustl.edu	37	19	50210791	50210791	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_152359.1	+1	provisional	p.F454L	1.000	40	0%	37	27%	-	-	benign(0.078)	deleterious(0.04)	neutral(0.354)	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases
NLRP12	91662	genome.wustl.edu	37	19	54314085	54314085	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144687.2	-1	reviewed	p.S276	0.000	55	0%	42	35.7%	-	-	-	-	-	HMMPfam_NACHT
MBOAT7	79143	genome.wustl.edu	37	19	54691157	54691157	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024298.3	-1	reviewed	p.A73	0.995	11	0%	11	36.4%	-	-	-	-	-	NULL
TBC1D20	128637	genome.wustl.edu	37	20	420954	420954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_144628.2	-1	validated	p.V236M	0.996	36	0%	36	30.6%	-	-	possibly_damaging(0.867)	deleterious(0)	deleterious(0.781)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
C20orf141	128653	genome.wustl.edu	37	20	2796055	2796055	+	Silent	SNP	T	T	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080739.2	+1	validated	p.L75	0.016	81	0%	98	18.4%	-	-	-	-	-	NULL
C20orf141	128653	genome.wustl.edu	37	20	2796056	2796056	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_080739.2	+1	validated	p.L76V	0.026	81	0%	98	17.3%	-	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	NULL
KIF16B	55614	genome.wustl.edu	37	20	16360433	16360433	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000450176	-1	known	p.M173T	0.936	333	0%	581	25.6%	-	-	-	-	-	NULL
C20orf26	26074	genome.wustl.edu	37	20	20257854	20257854	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015585.3	+1	validated	p.V850M	0.213	75	0%	49	38.8%	-	-	probably_damaging(0.964)	deleterious(0.01)	deleterious(0.812)	superfamily_FAD/NAD(P)-binding domain
GZF1	64412	genome.wustl.edu	37	20	23350333	23350333	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022482.3	+1	validated	p.C580	0.734	186	0%	120	23.3%	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
EPB41L1	2036	genome.wustl.edu	37	20	34763489	34763491	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_012156.2	+1	reviewed	p.K66in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TTPAL	79183	genome.wustl.edu	37	20	43108645	43108645	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039199.1	+1	validated	p.S2	0.989	104	0%	125	26.4%	-	-	-	-	-	NULL
SALL4	57167	genome.wustl.edu	37	20	50407891	50407891	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020436.3	-1	reviewed	p.A377	0.003	74	1.4%	88	21.6%	-	-	-	-	-	NULL
DIDO1	11083	genome.wustl.edu	37	20	61512975	61512975	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_033081.1	-1	reviewed	p.P1445S	1.000	14	0%	25	20%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
C21orf59	56683	genome.wustl.edu	37	21	33976522	33976522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000300260	-1	known	p.G127C	0.002	117	0%	63	27%	-	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
DSCAM	1826	genome.wustl.edu	37	21	42064794	42064794	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001389.3	-1	validated	p.S150	0.994	157	0%	126	19.8%	-	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
LOC100128009	100128009	genome.wustl.edu	37	22	17414574	17414574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	XM_001726296.1	-1	model	p.P211H	1.000	249	0%	246	28.9%	-	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
TXNRD2	10587	genome.wustl.edu	37	22	19918613	19918613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000334363	-1	known	p.R38W	0.000	110	0%	87	27.6%	-	-	benign(0.009)	deleterious(0.04)	neutral(0.349)	NULL
HPS4	89781	genome.wustl.edu	37	22	26860141	26860141	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_022081.4	-1	reviewed	p.T485	0.000	235	0%	145	22.8%	-	-	-	-	-	NULL
PNPLA3	80339	genome.wustl.edu	37	22	44340602	44340602	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_025225.2	+1	reviewed	p.D382N	0.004	99	0%	92	21.7%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
SHOX	6473	genome.wustl.edu	37	X	591764	591764	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000451.3	+1	reviewed	p.A44	0.998	13	0%	13	61.5%	-	-	-	-	-	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11206862	11206862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_013427.2	-1	reviewed	p.R355W	0.987	246	0%	255	26.7%	-	-	probably_damaging(0.954)	deleterious(0)	deleterious(0.842)	NULL
EGFL6	25975	genome.wustl.edu	37	X	13651119	13651119	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_015507.3	+1	reviewed	p.E523*	1.000	245	0%	252	23.4%	-	-	-	-	-	HMMPfam_MAM,HMMSmart_SM00137
PHEX	5251	genome.wustl.edu	37	X	22095598	22095598	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_000444.4	+1	reviewed	p.A147	0.085	493	0%	575	20%	-	-	-	-	-	HMMPfam_Peptidase_M13_N,superfamily_SSF55486
ZFX	7543	genome.wustl.edu	37	X	24228853	24228853	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_003410.3	+1	reviewed	p.T593M	1.000	401	0%	329	24.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DCAF8L2	347442	genome.wustl.edu	37	X	27765127	27765127	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001136533.1	+1	provisional	p.I39V	0.000	13	0%	34	20.6%	-	-	-	-	-	NULL
FAM47C	442444	genome.wustl.edu	37	X	37027101	37027101	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001013736.2	+1	validated	p.P206	0.003	187	0.5%	121	33.1%	-	-	-	-	-	NULL
USP9X	8239	genome.wustl.edu	37	X	41060457	41060457	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001039590.2	+1	reviewed	p.N1583S	1.000	198	0%	211	16.6%	-	-	benign(0.005)	tolerated(0.55)	neutral(0.007)	HMMPfam_UCH,superfamily_Cysteine proteinases
PQBP1	10084	genome.wustl.edu	37	X	48759749	48759749	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001032381.1	+1	reviewed	p.H178Y	0.978	28	0%	19	42.1%	-	-	benign(0)	tolerated(1)	-	NULL
KDM5C	8242	genome.wustl.edu	37	X	53223716	53223717	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_004187.3	-1	reviewed	p.V1216fs	0.998:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
FOXR2	139628	genome.wustl.edu	37	X	55650270	55650270	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_198451.3	+1	validated	p.A42	0.373	184	0%	156	28.2%	-	-	-	-	-	NULL
KLHL4	56062	genome.wustl.edu	37	X	86924385	86924385	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_057162.2	+1	reviewed	p.L718	0.001	195	0%	203	23.2%	-	-	-	-	-	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91090945	91090945	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_032968.3	+1	reviewed	p.I148V	1.000	155	0%	192	21.4%	-	-	probably_damaging(0.993)	tolerated(0.3)	deleterious(0.479)	HMMPfam_Cadherin,superfamily_Cadherin-like
PCDH19	57526	genome.wustl.edu	37	X	99662948	99662948	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001105243.1	-1	reviewed	p.P216	0.740	54	0%	39	15.4%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
ALG13	79868	genome.wustl.edu	37	X	110951600	110951600	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ENST00000394780	+1	known	p.L243	1.000	317	0%	399	26.6%	-	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
LRCH2	57631	genome.wustl.edu	37	X	114468285	114468285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_020871.3	-1	validated	p.G107D	0.909	4	0.000	10	0.400	-	-	possibly_damaging(0.527)	tolerated(0.23)	neutral(0.220)	superfamily_SSF52058
RNF113A	7737	genome.wustl.edu	37	X	119005322	119005322	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_006978.2	-1	reviewed	p.S85	0.999	203	0%	259	23.2%	-	-	-	-	-	NULL
AKAP14	158798	genome.wustl.edu	37	X	119037261	119037261	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_178813.5	+1	reviewed	p.P25	0.000	187	0%	187	25.1%	-	-	-	-	-	NULL
NKAP	79576	genome.wustl.edu	37	X	119066144	119066144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.R258K	0.467	221	0%	240	26.7%	-	-	unknown(0)	tolerated(1)	-	NULL
NKAP	79576	genome.wustl.edu	37	X	119068461	119068461	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_024528.3	-1	reviewed	p.R245G	0.591	141	0%	121	28.9%	-	-	unknown(0)	tolerated(0.09)	-	NULL
DNASE1L1	1774	genome.wustl.edu	37	X	153633811	153633812	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0GW-01A-11W-A062-09	TCGA-A5-A0GW-10A-01W-A062-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	NM_001009932.1	-1	reviewed	p.V34fs	0.976:0.990	-	-	-	-	-	-	-	-	-	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos,HMMSmart_DNaseIc
