Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ACAN	176	genome.wustl.edu	37	15	89417113	89417113	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	89417113	89417113	C	T	SNP	ACAN	NM_013227	human	genbank	57_37b	+1	reviewed	silent	c.7029	p.T2343	0.997	superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00406,PatternScan_IG_MHC,HMMSmart_SM00445,HMMPfam_Xlink,superfamily_C-type lectin-like,PatternScan_LINK_1,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032	-	no_errors
ACER2	340485	genome.wustl.edu	37	9	19423945	19423945	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	19423945	19423945	A	G	SNP	ACER2	NM_001010887	human	genbank	57_37b	+1	validated	missense	c.194	p.Y65C	1.000	HMMPfam_aPHC	HMMPfam_aPHC	-	no_errors
ARHGEF11	9826	genome.wustl.edu	37	1	156910022	156910022	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	156910022	156910022	A	T	SNP	ARHGEF11	NM_198236	human	genbank	57_37b	-1	reviewed	missense	c.3710	p.L1237H	0.841	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_RGS-like,superfamily_Regulat_G_prot_signal_superfam,HMMSmart_RGS,superfamily_DH-domain,HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_SSF50729,HMMSmart_PH	-	no_errors
ARID5A	10865	genome.wustl.edu	37	2	97217854	97217854	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	97217854	97217854	T	A	SNP	ARID5A	NM_212481	human	genbank	57_37b	+1	validated	missense	c.1589	p.V530D	1.000	NULL	HMMPfam_ARID,superfamily_ARID-like,HMMSmart_SM00501	-	no_errors
ATG4B	23192	genome.wustl.edu	37	2	242610773	242610773	+	Missense_Mutation	SNP	T	T	A	rs7601000	byCluster;byFrequency	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	242610773	242610773	T	A	SNP	ATG4B	NM_013325	human	genbank	57_37b	+1	reviewed	missense	c.1061	p.L354Q	0.976	NULL	HMMPfam_Peptidase_C54	-	
BCORL1	63035	genome.wustl.edu	37	X	129148840	129148840	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	129148840	129148840	G	T	SNP	BCORL1	NM_021946	human	genbank	57_37b	+1	validated	missense	c.2092	p.D698Y	1.000	NULL	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	-	no_errors
BPI	671	genome.wustl.edu	37	20	36939032	36939036	+	Frame_Shift_Del	DEL	CACAT	CACAT	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	CACAT	CACAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36939032	36939036	CACAT	-	DEL	BPI	NM_001725	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.526_530	p.H176fs	0.000:0.000:0.000:0.005:0.270	superfamily_Bactericidal_perm-incr_a/b_dom,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP	superfamily_Bactericidal_perm-incr_a/b_dom,PatternScan_LBP_BPI_CETP,HMMSmart_BPI1,HMMPfam_LBP_BPI_CETP,HMMPfam_LBP_BPI_CETP_C,HMMSmart_BPI2	(deletion:cds_exon[36938893,36939054])	no_errors
BRCA2	675	genome.wustl.edu	37	13	32905149	32905150	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	32905149	32905150	AG	-	DEL	BRCA2	NM_000059	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.775_776	p.E260fs	0.015:0.026	NULL	HMMPfam_BRCA2,superfamily_BRCA2_helical,HMMPfam_BRCA-2_helical,superfamily_Nucleic_acid_OB,HMMPfam_BRCA-2_OB1,HMMPfam_Tower,superfamily_SSF81878,HMMPfam_BRCA-2_OB3	(deletion:cds_exon[32905056,32905167])	no_errors
C10orf82	143379	genome.wustl.edu	37	10	118424328	118424328	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	118424328	118424328	C	T	SNP	C10orf82	NM_144661	human	genbank	57_37b	-1	predicted	silent	c.405	p.K135	0.652	NULL	NULL	-	no_errors
C14orf177	283598	genome.wustl.edu	37	14	99182541	99182541	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	99182541	99182541	G	C	SNP	C14orf177	NM_182560	human	genbank	57_37b	+1	provisional	missense	c.13	p.E5Q	0.001	NULL	NULL	-	no_errors
C19orf62	29086	genome.wustl.edu	37	19	17389704	17389704	+	Missense_Mutation	SNP	G	A	A	rs8170	byCluster;byFrequency;bySubmitter;by1000genomes	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	17389704	17389704	G	A	SNP	C19orf62	ENST00000300965	human	ensembl	57_37b	+1	known	missense	c.842	p.S281N	1.000	NULL	NULL	-	
CAMSAP1L1	23271	genome.wustl.edu	37	1	200818319	200818319	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	200818319	200818319	G	T	SNP	CAMSAP1L1	NM_203459	human	genbank	57_37b	+1	validated	missense	c.2422	p.A808S	0.969	NULL	superfamily_Calponin-homology domain CH-domain,superfamily_PRC-barrel domain,HMMPfam_DUF1781	-	no_errors
CCNC	892	genome.wustl.edu	37	6	99993065	99993065	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	99993065	99993065	C	G	SNP	CCNC	NM_005190	human	genbank	57_37b	-1	reviewed	missense	c.720	p.Q240H	1.000	superfamily_Cyclin-like	superfamily_Cyclin-like,HMMSmart_SM00385,HMMPfam_Cyclin_N	-	no_errors
CDK14	0	genome.wustl.edu	37	7	90377007	90377007	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	90377007	90377007	C	T	SNP	CDK14	NM_012395	human	genbank	57_37b	+1	validated	silent	c.327	p.P109	1.000	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_CYTOCHROME_B5_1,PatternScan_PROTEIN_KINASE_ST	-	no_errors
CHERP	10523	genome.wustl.edu	37	19	16652820	16652820	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	16652820	16652820	G	A	SNP	CHERP	NM_006387	human	genbank	57_37b	-1	validated	silent	c.60	p.A20	0.999	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp	superfamily_Surp module (SWAP domain Pfam 01805),HMMSmart_SM00648,HMMPfam_Surp,superfamily_ENTH/VHS domain,HMMPfam_DUF618,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
COL4A4	1286	genome.wustl.edu	37	2	227872737	227872737	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	227872737	227872737	C	T	SNP	COL4A4	NM_000092	human	genbank	57_37b	-1	reviewed	silent	c.4806	p.L1602	0.966	superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
DDX11	1663	genome.wustl.edu	37	12	31242378	31242381	+	Frame_Shift_Del	DEL	GCAG	GCAG	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	GCAG	GCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	31242378	31242381	GCAG	-	DEL	DDX11	NM_152438	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.834_837	p.Q279fs	1.000:1.000:1.000:0.979	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00488,HMMPfam_DEAD_2,HMMSmart_SM00491	(deletion:cds_exon[31242337,31242424])	no_errors
EIF5B	9669	genome.wustl.edu	37	2	99999274	99999274	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	99999274	99999274	G	C	SNP	EIF5B	NM_015904	human	genbank	57_37b	+1	reviewed	missense	c.2161	p.D721H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_GTP_EFTU,HMMPfam_GTP_EFTU_D2,superfamily_Initiation factor IF2/eIF5b domain 3,superfamily_Translation proteins	-	no_errors
ELOVL5	60481	genome.wustl.edu	37	6	53134010	53134010	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	53134010	53134010	C	G	SNP	ELOVL5	NM_021814	human	genbank	57_37b	-1	provisional	missense	c.815	p.G272A	0.999	NULL	PatternScan_ELO,HMMPfam_ELO	-	no_errors
EML4	27436	genome.wustl.edu	37	2	42557268	42557268	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	42557268	42557268	A	T	SNP	EML4	NM_019063	human	genbank	57_37b	+1	validated	missense	c.2867	p.E956V	0.997	NULL	HMMPfam_HELP,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_EF_HAND_1,PatternScan_TRYPSIN_SER,PatternScan_WD_REPEATS_1,PatternScan_HIS_ACID_PHOSPHAT_2	-	no_errors
ENSG00000215976	0	genome.wustl.edu	37	12	104378945	104378964	+	RNA	DEL	ACACACACACACACACACAC	ACACACACACACACACACAC	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	ACACACACACACACACACAC	ACACACACACACACACACAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	104378945	104378964	ACACACACACACACACACAC	-	DEL	ENSG00000215976	ENST00000401157	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.022:0.023:0.025:0.026:0.026:0.026:0.026:0.025:0.024:0.023:0.022:0.020:0.017:0.014:0.016:0.017:0.017:0.017:0.017:0.015	-	-	(deletion:rna[104378889,104378982])	no_errors
ENSG00000245432	0	genome.wustl.edu	37	19	8642160	8642160	+	RNA	SNP	T	T	C	rs4542783	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	8642160	8642160	T	C	SNP	ENSG00000245432	ENST00000501512	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.001	-	-	-	
ENSG00000245549	0	genome.wustl.edu	37	1	16947064	16947064	+	RNA	SNP	G	G	C	rs12041479	by2Hit2Allele	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	16947064	16947064	G	C	SNP	ENSG00000245549	ENST00000501442	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.011	-	-	-	
ENSG00000246153	0	genome.wustl.edu	37	12	15097402	15097402	+	RNA	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	15097402	15097402	G	C	SNP	ENSG00000246153	ENST00000501429	human	ensembl	57_37b	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
FAM171B	165215	genome.wustl.edu	37	2	187616031	187616031	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	187616031	187616031	G	A	SNP	FAM171B	NM_177454	human	genbank	57_37b	+1	validated	missense	c.895	p.G299S	1.000	HMMPfam_UPF0560	HMMPfam_UPF0560	-	no_errors
FGFR4	2264	genome.wustl.edu	37	5	176520707	176520707	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	176520707	176520707	G	A	SNP	FGFR4	NM_002011	human	genbank	57_37b	+1	reviewed	missense	c.1450	p.A484T	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig,HMMPfam_I-set,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
FN1	2335	genome.wustl.edu	37	2	216264037	216264037	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	216264037	216264037	C	G	SNP	FN1	NM_212482	human	genbank	57_37b	-1	reviewed	missense	c.3291	p.E1097D	1.000	HMMSmart_SM00060,HMMPfam_fn3	superfamily_Fibronectin type I module,HMMPfam_fn1,PatternScan_FN1_1,HMMSmart_SM00058,PatternScan_EGF_1,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
FREM1	158326	genome.wustl.edu	37	9	14801748	14801748	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	14801748	14801748	C	T	SNP	FREM1	NM_144966	human	genbank	57_37b	-1	validated	missense	c.3596	p.R1199K	0.001	NULL	superfamily_Cadherin-like,PatternScan_SPASE_I_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	-	no_errors
GAS2L3	283431	genome.wustl.edu	37	12	101017635	101017635	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	101017635	101017635	G	C	SNP	GAS2L3	NM_174942	human	genbank	57_37b	+1	provisional	missense	c.1052	p.G351A	0.000	NULL	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_GAS2,HMMSmart_SM00243	-	no_errors
GRIN2D	2906	genome.wustl.edu	37	19	48917733	48917733	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	48917733	48917733	C	A	SNP	GRIN2D	NM_000836	human	genbank	57_37b	+1	reviewed	missense	c.1304	p.A435D	1.000	superfamily_SSF53822,superfamily_SSF53850,HMMSmart_PBPe	superfamily_SSF53822,HMMPfam_ANF_receptor,superfamily_SSF53850,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,HMMPfam_Lig_chan	-	no_errors
HEATR1	55127	genome.wustl.edu	37	1	236749563	236749563	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236749563	236749563	A	C	SNP	HEATR1	NM_018072	human	genbank	57_37b	-1	validated	silent	c.1905	p.P635	0.553	NULL	superfamily_ARM-type_fold,HMMPfam_HEAT,HMMPfam_BP28CT	-	no_errors
HMMR	3161	genome.wustl.edu	37	5	162905690	162905690	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	162905690	162905690	G	T	SNP	HMMR	NM_001142556	human	genbank	57_37b	+1	reviewed	silent	c.1269	p.G423	1.000	NULL	NULL	-	no_errors
KCNQ5	56479	genome.wustl.edu	37	6	73879506	73879506	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	73879506	73879506	A	C	SNP	KCNQ5	NM_019842	human	genbank	57_37b	+1	reviewed	missense	c.1506	p.E502D	0.980	HMMPfam_KCNQ_channel	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,HMMPfam_KCNQ_channel	-	no_errors
KIAA1755	85449	genome.wustl.edu	37	20	36869429	36869429	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	36869429	36869429	C	A	SNP	KIAA1755	NM_001029864	human	genbank	57_37b	-1	predicted	silent	c.1104	p.P368	0.000	NULL	superfamily_Spectrin repeat	-	no_errors
KIF4B	285643	genome.wustl.edu	37	5	154393807	154393807	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	154393807	154393807	A	G	SNP	KIF4B	NM_001099293	human	genbank	57_37b	+1	provisional	missense	c.388	p.S130G	0.908	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin	HMMSmart_KISc,superfamily_SSF52540,HMMPfam_Kinesin,PatternScan_KINESIN_MOTOR_DOMAIN1	-	no_errors
KSR1	8844	genome.wustl.edu	37	17	25909747	25909747	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	25909747	25909747	A	G	SNP	KSR1	NM_014238	human	genbank	57_37b	+1	validated	missense	c.185	p.D62G	0.802	NULL	superfamily_SSF57889,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LIG3	3980	genome.wustl.edu	37	17	33323606	33323606	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	33323606	33323606	A	G	SNP	LIG3	NM_013975	human	genbank	57_37b	+1	reviewed	missense	c.1757	p.Q586R	0.995	superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_DNA_ligase_A_M	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-PARP,PatternScan_PARP_ZN_FINGER_1,HMMPfam_DNA_ligase_A_N,superfamily_DNA ligase/mRNA capping enzyme catalytic domain,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A1,PatternScan_DNA_LIGASE_A2,HMMPfam_DNA_ligase_A_C,superfamily_BRCT domain,HMMSmart_SM00292	-	no_errors
LOC100128816	0	genome.wustl.edu	37	12	3720945	3720945	+	Nonsense_Mutation	SNP	A	T	T	rs10848892	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	3720945	3720945	A	T	SNP	LOC100128816	XM_001719755	human	genbank	57_37b	-1	model	nonsense	c.212	p.L71*	0.128	NULL	NULL	-	
LOC100287520	0	genome.wustl.edu	37	11	58854594	58854594	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	58854594	58854594	G	C	SNP	LOC100287520	XM_002343089	human	genbank	57_37b	+1	model	missense	c.247	p.V83L	0.896	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat)	HMMPfam_Gly_acyl_tr_N,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Gly_acyl_tr_C	-	no_errors
LOC100288624	0	genome.wustl.edu	37	3	124223779	124223779	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	124223779	124223779	C	A	SNP	LOC100288624	XM_002342367	human	genbank	57_37b	-1	model	nonsense	c.217	p.G73*	0.679	NULL	NULL	-	no_errors
LOC646864	646864	genome.wustl.edu	37	19	23031166	23031166	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	23031166	23031166	A	C	SNP	LOC646864	XM_001726885	human	genbank	57_37b	+1	model	missense	c.194	p.N65T	0.993	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
MADD	8567	genome.wustl.edu	37	11	47336775	47336775	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	47336775	47336775	G	T	SNP	MADD	NM_003682	human	genbank	57_37b	+1	reviewed	missense	c.4274	p.G1425V	1.000	NULL	HMMPfam_uDENN,HMMSmart_SM00800,HMMPfam_DENN,HMMSmart_SM00799,HMMSmart_SM00801,HMMPfam_dDENN	-	no_errors
MAP1A	4130	genome.wustl.edu	37	15	43814046	43814046	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	43814046	43814046	G	C	SNP	MAP1A	NM_002373	human	genbank	57_37b	+1	reviewed	missense	c.375	p.K125N	1.000	NULL	superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
MAP6	4135	genome.wustl.edu	37	11	75298782	75298782	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	75298782	75298782	G	C	SNP	MAP6	NM_033063	human	genbank	57_37b	-1	reviewed	silent	c.1764	p.V588	0.000	NULL	HMMPfam_STOP	-	no_errors
MMP25	64386	genome.wustl.edu	37	16	3107152	3107152	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	3107152	3107152	C	A	SNP	MMP25	NM_022468	human	genbank	57_37b	+1	reviewed	silent	c.780	p.G260	0.448	superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10	PatternScan_CYSTEINE_SWITCH,PatternScan_HEMOPEXIN,HMMPfam_PG_binding_1,superfamily_PGBD_like,superfamily_SSF55486,HMMSmart_ZnMc,HMMPfam_Peptidase_M10,PatternScan_ZINC_PROTEASE,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX	-	no_errors
MYCBP2	23077	genome.wustl.edu	37	13	77862348	77862348	+	Nonsense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	77862348	77862348	G	C	SNP	MYCBP2	NM_015057	human	genbank	57_37b	-1	validated	nonsense	c.428	p.S143*	1.000	NULL	superfamily_RCC1/BLIP-II,PatternScan_RCC1_2,HMMPfam_RCC1,HMMPfam_PHR,superfamily_E set domains,superfamily_Galactose-binding domain-like,superfamily_RING/U-box,HMMSmart_SM00184	-	no_errors
MYH7	4625	genome.wustl.edu	37	14	23884326	23884326	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	23884326	23884326	G	A	SNP	MYH7	NM_000257	human	genbank	57_37b	-1	reviewed	nonsense	c.5437	p.Q1813*	1.000	HMMPfam_Myosin_tail_1	HMMPfam_Myosin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00242,HMMPfam_Myosin_head,HMMSmart_SM00015,HMMPfam_IQ,superfamily_Prefoldin,HMMPfam_Myosin_tail_1	-	no_errors
MYO1E	4643	genome.wustl.edu	37	15	59470680	59470680	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	59470680	59470680	C	A	SNP	MYO1E	NM_004998	human	genbank	57_37b	-1	validated	missense	c.1961	p.G654V	1.000	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Myosin_head,HMMPfam_Myosin_TH1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
NAT6	24142	genome.wustl.edu	37	3	50334919	50334919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	50334919	50334919	G	A	SNP	NAT6	NM_012191	human	genbank	57_37b	-1	provisional	silent	c.42	p.T14	0.005	NULL	HMMPfam_Acetyltransf_1,superfamily_Acyl_CoA_acyltransferase	-	no_errors
OR13C2	392376	genome.wustl.edu	37	9	107367295	107367295	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	107367295	107367295	A	C	SNP	OR13C2	NM_001004481	human	genbank	57_37b	-1	provisional	missense	c.614	p.L205W	0.020	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OR6N1	128372	genome.wustl.edu	37	1	158735696	158735696	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158735696	158735696	A	T	SNP	OR6N1	NM_001005185	human	genbank	57_37b	-1	provisional	nonsense	c.777	p.Y259*	0.985	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
PABPC4	8761	genome.wustl.edu	37	1	40028055	40028055	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	40028055	40028055	C	G	SNP	PABPC4	NM_001135653	human	genbank	57_37b	-1	reviewed	missense	c.1702	p.E568Q	1.000	superfamily_PABP_HYD,HMMPfam_PABP	superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA	-	no_errors
PANX3	116337	genome.wustl.edu	37	11	124489690	124489690	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	124489690	124489690	G	A	SNP	PANX3	NM_052959	human	genbank	57_37b	+1	reviewed	silent	c.1038	p.L346	1.000	NULL	NULL	-	no_errors
PIWIL2	55124	genome.wustl.edu	37	8	22173773	22173788	+	Frame_Shift_Del	DEL	ATCGGGATGGATGTTT	ATCGGGATGGATGTTT	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	ATCGGGATGGATGTTT	ATCGGGATGGATGTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	22173773	22173788	ATCGGGATGGATGTTT	-	DEL	PIWIL2	NM_001135721	human	genbank	57_37b	+1	validated	frame_shift_del	c.2224_2239	p.I742fs	1.000:1.000:0.995:1.000:1.000:0.991:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.994:1.000	superfamily_Ribonuclease H-like,HMMPfam_Piwi	superfamily_PAZ domain,HMMPfam_PAZ,superfamily_Ribonuclease H-like,HMMPfam_Piwi	(deletion:cds_exon[22173758,22173846])	no_errors
PKHD1L1	93035	genome.wustl.edu	37	8	110503282	110503282	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	110503282	110503282	G	C	SNP	PKHD1L1	NM_177531	human	genbank	57_37b	+1	validated	missense	c.10066	p.D3356H	1.000	superfamily_Pectin lyase-like,HMMSmart_SM00710	superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMSmart_SM00758,superfamily_Anthrax protective antigen,HMMSmart_SM00710,superfamily_Cupredoxins,HMMPfam_G8,superfamily_Pectin lyase-like	-	no_errors
PRAMEF2	65122	genome.wustl.edu	37	1	12920065	12920065	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	12920065	12920065	C	T	SNP	PRAMEF2	NM_023014	human	genbank	57_37b	+1	provisional	missense	c.805	p.L269F	0.011	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRUNE2	158471	genome.wustl.edu	37	9	79324701	79324701	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	79324701	79324701	T	A	SNP	PRUNE2	NM_015225	human	genbank	57_37b	-1	validated	missense	c.2489	p.D830V	0.957	NULL	superfamily_SSF64182,superfamily_Ferritin/RR_like,superfamily_CRAL_TRIO_C,HMMSmart_SEC14	-	no_errors
PTPN22	26191	genome.wustl.edu	37	1	114372636	114372636	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	114372636	114372636	C	A	SNP	PTPN22	NM_015967	human	genbank	57_37b	-1	reviewed	missense	c.2069	p.R690L	0.574	NULL	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
PTPRF	5792	genome.wustl.edu	37	1	44085063	44085063	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	44085063	44085063	G	A	SNP	PTPRF	NM_002840	human	genbank	57_37b	+1	reviewed	missense	c.4751	p.R1584Q	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
SALL4	57167	genome.wustl.edu	37	20	50407393	50407393	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	50407393	50407393	C	T	SNP	SALL4	NM_020436	human	genbank	57_37b	-1	reviewed	silent	c.1629	p.E543	1.000	NULL	HMMSmart_ZnF_C2H2,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_SSF57667	-	no_errors
SCYL2	55681	genome.wustl.edu	37	12	100720449	100720449	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	100720449	100720449	A	G	SNP	SCYL2	NM_017988	human	genbank	57_37b	+1	provisional	missense	c.1559	p.D520G	1.000	superfamily_ARM repeat	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00220,HMMPfam_Pkinase,superfamily_ARM repeat	-	no_errors
SGCA	6442	genome.wustl.edu	37	17	48252661	48252661	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	48252661	48252661	G	T	SNP	SGCA	NM_000023	human	genbank	57_37b	+1	reviewed	nonsense	c.1027	p.E343*	1.000	HMMPfam_Sarcoglycan_2	HMMPfam_Sarcoglycan_2,HMMSmart_SM00736,superfamily_Cadherin-like	-	no_errors
SMR3B	10879	genome.wustl.edu	37	4	71255687	71255687	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	71255687	71255687	C	G	SNP	SMR3B	ENST00000381030	human	ensembl	57_37b	+1	known	silent	c.195	p.S65	0.001	NULL	NULL	-	no_errors
SNAI2	6591	genome.wustl.edu	37	8	49832526	49832542	+	Frame_Shift_Del	DEL	CAAGGTAATGTGTGGGT	CAAGGTAATGTGTGGGT	-	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	CAAGGTAATGTGTGGGT	CAAGGTAATGTGTGGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	49832526	49832542	CAAGGTAATGTGTGGGT	-	DEL	SNAI2	NM_003068	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.554_538	p.T180fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.961:0.945:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	(deletion:cds_exon[49832455,49833000])	no_errors
SPTBN2	6712	genome.wustl.edu	37	11	66455032	66455032	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	66455032	66455032	C	G	SNP	SPTBN2	NM_006946	human	genbank	57_37b	-1	reviewed	missense	c.6588	p.Q2196H	1.000	HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
TAF5L	27097	genome.wustl.edu	37	1	229750159	229750159	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	229750159	229750159	T	G	SNP	TAF5L	NM_014409	human	genbank	57_37b	-1	reviewed	missense	c.71	p.D24A	1.000	NULL	HMMPfam_TFIID_90kDa,superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1	-	no_errors
TARS	6897	genome.wustl.edu	37	5	33455166	33455166	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	33455166	33455166	A	C	SNP	TARS	NM_152295	human	genbank	57_37b	+1	reviewed	missense	c.570	p.E190D	0.620	superfamily_ThrRS/AlaRS common domain	HMMPfam_TGS,superfamily_TGS-like,superfamily_ThrRS/AlaRS common domain,HMMPfam_tRNA_SAD,superfamily_Class II aaRS and biotin synthetases,HMMPfam_tRNA-synt_2b,superfamily_Anticodon-binding domain of Class II aaRS,HMMPfam_HGTP_anticodon	-	no_errors
TBPL2	387332	genome.wustl.edu	37	14	55907172	55907172	+	Missense_Mutation	SNP	C	C	G	rs8019270	byCluster;byFrequency;by2Hit2Allele;byHapMap;by1000genomes	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	55907172	55907172	C	G	SNP	TBPL2	NM_199047	human	genbank	57_37b	-1	validated	missense	c.92	p.R31P	0.000	NULL	superfamily_TFIID_C/glycos_N,HMMPfam_TBP,PatternScan_TFIID	-	
TEP1	7011	genome.wustl.edu	37	14	20872808	20872808	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	20872808	20872808	G	C	SNP	TEP1	NM_007110	human	genbank	57_37b	-1	reviewed	missense	c.994	p.L332V	1.000	HMMPfam_TROVE	HMMPfam_TEP1_N,HMMPfam_TROVE,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_NACHT,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TET2	54790	genome.wustl.edu	37	4	106155363	106155363	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	106155363	106155363	T	C	SNP	TET2	NM_001127208	human	genbank	57_37b	+1	validated	silent	c.264	p.C88	0.017	NULL	NULL	-	no_errors
TKTL1	8277	genome.wustl.edu	37	X	153524215	153524215	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153524215	153524215	G	T	SNP	TKTL1	NM_012253	human	genbank	57_37b	+1	validated	missense	c.3	p.M1I	0.295	NULL	superfamily_Thiamin diphosphate-binding fold (THDP-binding),HMMPfam_Transketolase_N,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,superfamily_TK C-terminal domain-like,HMMPfam_Transketolase_C	-	no_errors
TNPO1	3842	genome.wustl.edu	37	5	72196887	72196887	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	72196887	72196887	G	C	SNP	TNPO1	NM_002270	human	genbank	57_37b	+1	reviewed	missense	c.2501	p.S834T	1.000	superfamily_ARM repeat	superfamily_ARM repeat,HMMPfam_IBN_N,HMMPfam_HEAT	-	no_errors
TNS1	7145	genome.wustl.edu	37	2	218669195	218669195	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	218669195	218669195	C	A	SNP	TNS1	NM_022648	human	genbank	57_37b	-1	reviewed	missense	c.5195	p.G1732V	1.000	superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	superfamily_SSF52799,HMMPfam_PTEN_C2,superfamily_C2_CaLB,superfamily_SSF55550,HMMSmart_SH2,HMMPfam_SH2,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PTB	-	no_errors
TRAPPC10	7109	genome.wustl.edu	37	21	45483643	45483643	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	45483643	45483643	G	A	SNP	TRAPPC10	NM_003274	human	genbank	57_37b	+1	reviewed	missense	c.1015	p.V339M	1.000	NULL	PatternScan_AA_TRNA_LIGASE_I	-	no_errors
TRPM5	29850	genome.wustl.edu	37	11	2433403	2433403	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	2433403	2433403	C	G	SNP	TRPM5	NM_014555	human	genbank	57_37b	-1	validated	missense	c.2436	p.M812I	1.000	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19497282	19497282	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	19497282	19497282	G	C	SNP	UBR4	NM_020765	human	genbank	57_37b	-1	validated	missense	c.3617	p.S1206C	1.000	NULL	superfamily_ARM repeat,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-UBR,HMMSmart_SM00396,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
USH2A	7399	genome.wustl.edu	37	1	215916652	215916652	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	215916652	215916652	C	T	SNP	USH2A	NM_206933	human	genbank	57_37b	-1	reviewed	silent	c.11415	p.V3805	1.000	HMMSmart_SM00060,HMMPfam_fn3,superfamily_Fibronectin type III	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
USP33	23032	genome.wustl.edu	37	1	78187538	78187538	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	78187538	78187538	G	C	SNP	USP33	NM_015017	human	genbank	57_37b	-1	validated	missense	c.1728	p.F576L	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMSmart_SM00290,HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,HMMSmart_SM00695	-	no_errors
USP7	7874	genome.wustl.edu	37	16	8988986	8988986	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	8988986	8988986	C	G	SNP	USP7	NM_003470	human	genbank	57_37b	-1	validated	missense	c.2941	p.D981H	1.000	NULL	superfamily_Traf_like,HMMSmart_MATH,HMMPfam_MATH,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ZNF385D	79750	genome.wustl.edu	37	3	21462907	21462907	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A085-01A-11W-A019-09	TCGA-A8-A085-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	21462907	21462907	C	T	SNP	ZNF385D	NM_024697	human	genbank	57_37b	-1	validated	silent	c.987	p.K329	1.000	NULL	HMMSmart_ZnF_U1,HMMSmart_ZnF_C2H2	-	no_errors
