Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
ALPK1	80216	genome.wustl.edu	37	4	113303616	113303616	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	113303616	113303616	G	A	SNP	ALPK1	NM_001102406	human	genbank	57_37b	+1	validated	missense	c.184	p.V62M	1.000	NULL	superfamily_Protein kinase-like (PK-like),HMMSmart_SM00811,HMMPfam_Alpha_kinase	-	no_errors
C16orf62	57020	genome.wustl.edu	37	16	19702725	19702727	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	16	19702725	19702727	AAC	-	DEL	C16orf62	NM_020314	human	genbank	57_37b	+1	predicted	in_frame_del	c.2578_2580	p.N861in_frame_del	1.000:1.000:1.000	NULL	NULL	(deletion:cds_exon[19702675,19702793])	no_errors
CD1E	913	genome.wustl.edu	37	1	158326619	158326619	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	158326619	158326619	C	T	SNP	CD1E	NM_030893	human	genbank	57_37b	+1	reviewed	missense	c.1100	p.A367V	0.002	NULL	superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin,HMMPfam_C1-set,HMMSmart_SM00407	-	no_errors
CELA2B	51032	genome.wustl.edu	37	1	15802970	15802970	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	15802970	15802970	C	T	SNP	CELA2B	NM_015849	human	genbank	57_37b	+1	reviewed	missense	c.59	p.S20F	0.970	superfamily_Pept_Ser_Cys	superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CLCA2	9635	genome.wustl.edu	37	1	86894174	86894174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	86894174	86894174	G	A	SNP	CLCA2	NM_006536	human	genbank	57_37b	+1	reviewed	missense	c.398	p.G133E	1.000	HMMPfam_CLCA_N	HMMPfam_CLCA_N,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_DUF1973	-	no_errors
COL27A1	85301	genome.wustl.edu	37	9	116930357	116930357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	116930357	116930357	C	T	SNP	COL27A1	NM_032888	human	genbank	57_37b	+1	provisional	silent	c.522	p.C174	0.992	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Collagen,HMMSmart_SM00038,HMMPfam_COLFI	-	no_errors
DAB2IP	153090	genome.wustl.edu	37	9	124519319	124519319	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	124519319	124519319	G	A	SNP	DAB2IP	NM_032552	human	genbank	57_37b	+1	validated	silent	c.306	p.E102	1.000	HMMSmart_SM00233	HMMSmart_SM00233,superfamily_PH domain-like,HMMPfam_PH,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMSmart_SM00323,superfamily_GTPase activation domain GAP,HMMPfam_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1	-	no_errors
EIF4A2	1974	genome.wustl.edu	37	3	186503952	186503952	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186503952	186503952	G	A	SNP	EIF4A2	NM_001967	human	genbank	57_37b	+1	validated	splice_site	c.518-1	e6-1	1.000	-	-	-	no_errors
ENSG00000246805	0	genome.wustl.edu	37	7	27237586	27237586	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	27237586	27237586	C	T	SNP	ENSG00000246805	ENST00000500164	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.979	-	-	-	no_errors
ERBB2	2064	genome.wustl.edu	37	17	37881332	37881332	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37881332	37881332	G	A	SNP	ERBB2	NM_004448	human	genbank	57_37b	+1	reviewed	missense	c.2524	p.V842I	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR	superfamily_L domain-like,HMMPfam_Recep_L_domain,superfamily_Growth factor receptor domain,HMMPfam_Furin-like,HMMSmart_SM00261,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,PatternScan_EF_HAND_1,HMMPfam_YLP	-	no_errors
FAT3	120114	genome.wustl.edu	37	11	92087511	92087511	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	92087511	92087511	A	T	SNP	FAT3	NM_001008781	human	genbank	57_37b	+1	validated	missense	c.2233	p.I745F	1.000	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin,HMMSmart_SM00181,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00179,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2	-	no_errors
FLI1	2313	genome.wustl.edu	37	11	128680832	128680832	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	128680832	128680832	C	T	SNP	FLI1	NM_002017	human	genbank	57_37b	+1	validated	silent	c.1308	p.V436	0.765	NULL	"superfamily_SAM/Pointed domain,HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2"	-	no_errors
FLJ40330	645784	genome.wustl.edu	37	2	89104384	89104384	+	RNA	SNP	G	G	A	rs71235233	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	89104384	89104384	G	A	SNP	FLJ40330	NR_015424	human	genbank	57_37b	+1	predicted	rna	NULL	NULL	0.004	-	-	-	
HCFC1	3054	genome.wustl.edu	37	X	153224817	153224817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	153224817	153224817	G	A	SNP	HCFC1	NM_005334	human	genbank	57_37b	-1	reviewed	missense	c.1570	p.R524W	0.999	HMMSmart_SM00060	superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMPfam_Kelch_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
HDAC11	79885	genome.wustl.edu	37	3	13545697	13545697	+	Missense_Mutation	SNP	C	T	T	rs17038240	byCluster;byFrequency;by1000genomes	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	13545697	13545697	C	T	SNP	HDAC11	ENST00000383796	human	ensembl	57_37b	+1	known	missense	c.626	p.P209L	0.066	NULL	HMMPfam_Hist_deacetyl,superfamily_SSF52768	-	
KIAA1804	84451	genome.wustl.edu	37	1	233518401	233518401	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	233518401	233518401	A	G	SNP	KIAA1804	NM_032435	human	genbank	57_37b	+1	validated	missense	c.3055	p.R1019G	1.000	NULL	superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMPfam_Pkinase,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
LHX9	56956	genome.wustl.edu	37	1	197889140	197889140	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	197889140	197889140	C	T	SNP	LHX9	NM_020204	human	genbank	57_37b	+1	reviewed	silent	c.213	p.C71	1.000	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LIPN	643418	genome.wustl.edu	37	10	90522041	90522041	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	90522041	90522041	C	T	SNP	LIPN	NM_001102469	human	genbank	57_37b	+1	validated	nonsense	c.205	p.R69*	0.006	HMMPfam_Abhydro_lipase,superfamily_SSF53474	HMMPfam_Abhydro_lipase,superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_LIPASE_SER	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56177537	56177538	+	Frame_Shift_Del	DEL	TG	TG	-	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56177537	56177538	TG	-	DEL	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	frame_shift_del	c.2510_2511	p.L838fs	1.000:0.998	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	(deletion:cds_exon[56177397,56178693])	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56178169	56178169	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	56178169	56178169	C	T	SNP	MAP3K1	NM_005921	human	genbank	57_37b	+1	validated	nonsense	c.3142	p.Q1048*	1.000	NULL	PatternScan_ZF_RING_1,HMMPfam_SWIM,superfamily_SSF57850,HMMSmart_RING,superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
NR1H2	7376	genome.wustl.edu	37	19	50882307	50882307	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	50882307	50882307	C	T	SNP	NR1H2	NM_007121	human	genbank	57_37b	+1	validated	missense	c.796	p.R266C	1.000	superfamily_Nuclear receptor ligand-binding domain	HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMPfam_zf-C4,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,HMMSmart_SM00430,HMMPfam_Hormone_recep	-	no_errors
PCDHGA5	56110	genome.wustl.edu	37	5	140744719	140744719	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	140744719	140744719	C	T	SNP	PCDHGA5	NM_018918	human	genbank	57_37b	+1	reviewed	silent	c.822	p.N274	0.266	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	HMMPfam_Cadherin_2,superfamily_Cadherin-like,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
PDE6C	5146	genome.wustl.edu	37	10	95380689	95380689	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	10	95380689	95380689	G	T	SNP	PDE6C	NM_006204	human	genbank	57_37b	+1	validated	missense	c.675	p.R225S	0.976	superfamily_SSF55781,HMMSmart_GAF	superfamily_SSF55781,HMMPfam_GAF,HMMSmart_GAF,superfamily_SSF109604,HMMSmart_HDc,HMMPfam_PDEase_I,PatternScan_PDEASE_I	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
RAD17	5884	genome.wustl.edu	37	5	68684870	68684870	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	68684870	68684870	A	G	SNP	RAD17	NM_133339	human	genbank	57_37b	+1	reviewed	missense	c.937	p.K313E	1.000	HMMPfam_Rad17,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Rad17,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RFC1	5981	genome.wustl.edu	37	4	39308302	39308302	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	4	39308302	39308302	G	A	SNP	RFC1	NM_002913	human	genbank	57_37b	-1	reviewed	silent	c.1905	p.S635	0.022	superfamily_SSF52540	superfamily_BRCT,HMMPfam_BRCT,HMMSmart_BRCT,superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_RFC1	-	no_errors
RS1	6247	genome.wustl.edu	37	X	18662718	18662718	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	X	18662718	18662718	G	C	SNP	RS1	NM_000330	human	genbank	57_37b	-1	reviewed	missense	c.354	p.D118E	1.000	HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1	PatternScan_FA58C_2,HMMSmart_FA58C,superfamily_Gal_bind_like,HMMPfam_F5_F8_type_C,PatternScan_FA58C_1	-	no_errors
RTN4RL2	349667	genome.wustl.edu	37	11	57235333	57235333	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	57235333	57235333	T	A	SNP	RTN4RL2	NM_178570	human	genbank	57_37b	+1	provisional	missense	c.283	p.S95T	1.000	superfamily_SSF52058	superfamily_SSF52058,HMMSmart_LRRNT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,HMMSmart_LRRCT	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36252856	36252857	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	36252856	36252857	-	T	INS	RUNX1	NM_001754	human	genbank	57_37b	-1	reviewed	frame_shift_ins	c.506_505	p.R169fs	1.000:0.998	HMMPfam_Runt,superfamily_p53-like transcription factors	HMMPfam_Runt,superfamily_p53-like transcription factors,HMMPfam_RunxI	-	no_errors
TBL1XR1	79718	genome.wustl.edu	37	3	176771560	176771560	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	176771560	176771560	C	G	SNP	TBL1XR1	NM_024665	human	genbank	57_37b	-1	reviewed	splice_site	c.204+1	e2+1	1.000	-	-	-	no_errors
TPM1	7168	genome.wustl.edu	37	15	63353074	63353074	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	63353074	63353074	C	G	SNP	TPM1	NM_000366	human	genbank	57_37b	+1	reviewed	missense	c.499	p.R167G	1.000	HMMPfam_Tropomyosin	HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN	-	no_errors
USP13	8975	genome.wustl.edu	37	3	179478911	179478911	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	179478911	179478911	G	C	SNP	USP13	NM_003940	human	genbank	57_37b	+1	validated	missense	c.1960	p.D654H	1.000	superfamily_SSF54001,HMMPfam_UCH,HMMPfam_UBA,HMMSmart_UBA	HMMSmart_ZnF_UBP,HMMPfam_zf-UBP,superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,HMMPfam_UBA,HMMSmart_UBA,superfamily_UBA_like,PatternScan_UCH_2_2	-	no_errors
USP29	57663	genome.wustl.edu	37	19	57640254	57640254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	57640254	57640254	C	T	SNP	USP29	NM_020903	human	genbank	57_37b	+1	validated	missense	c.211	p.H71Y	0.000	NULL	superfamily_SSF54001,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
WDR67	93594	genome.wustl.edu	37	8	124132397	124132397	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A08Z-01A-21W-A019-09	TCGA-A8-A08Z-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	124132397	124132397	C	T	SNP	WDR67	NM_145647	human	genbank	57_37b	+1	validated	silent	c.1539	p.L513	1.000	NULL	superfamily_WD40 repeat-like,HMMSmart_SM00320,HMMPfam_WD40,PatternScan_WD_REPEATS_1,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
