Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	annotation_errors_WU
AGGF1	55109	genome.wustl.edu	37	5	76348570	76348570	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	76348570	76348570	T	A	SNP	AGGF1	NM_018046	human	genbank	57_37b	+1	validated	missense	c.1405	p.Y469N	1.000	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
ANKRD28	23243	genome.wustl.edu	37	3	15753674	15753674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	15753674	15753674	C	T	SNP	ANKRD28	NM_015199	human	genbank	57_37b	-1	provisional	missense	c.1156	p.D386N	1.000	superfamily_Ankyrin repeat,HMMSmart_SM00248,HMMPfam_Ank	HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_Ank	-	no_errors
ANO5	203859	genome.wustl.edu	37	11	22215054	22215054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	22215054	22215054	C	T	SNP	ANO5	NM_213599	human	genbank	57_37b	+1	reviewed	missense	c.16	p.L6F	0.439	NULL	HMMPfam_DUF590	-	no_errors
ATP7B	540	genome.wustl.edu	37	13	52520471	52520471	+	Silent	SNP	C	C	T	rs1801247	byCluster;byFrequency;by1000genomes	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	13	52520471	52520471	C	T	SNP	ATP7B	NM_000053	human	genbank	57_37b	-1	reviewed	silent	c.3009	p.A1003	0.072	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M	superfamily_HMA heavy metal-associated domain,HMMPfam_HMA,PatternScan_HMA_1,HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M,superfamily_Calcium ATPase transduction domain A,superfamily_HAD-like,HMMPfam_Hydrolase,PatternScan_ATPASE_E1_E2,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	
BEND6	221336	genome.wustl.edu	37	6	56879947	56879947	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	56879947	56879947	C	T	SNP	BEND6	ENST00000370745	human	ensembl	57_37b	+1	known	missense	c.379	p.H127Y	0.964	NULL	NULL	-	no_errors
BFSP1	631	genome.wustl.edu	37	20	17475142	17475142	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	20	17475142	17475142	C	A	SNP	BFSP1	NM_001195	human	genbank	57_37b	-1	reviewed	missense	c.1575	p.Q525H	0.002	NULL	superfamily_Prefoldin	-	no_errors
C14orf39	317761	genome.wustl.edu	37	14	60938269	60938269	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	60938269	60938269	C	T	SNP	C14orf39	NM_174978	human	genbank	57_37b	-1	validated	splice_site	c.511+1	e5+1	1.000	-	-	-	no_errors
CEACAM5	1048	genome.wustl.edu	37	19	42213623	42213623	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	42213623	42213623	C	T	SNP	CEACAM5	NM_004363	human	genbank	57_37b	+1	validated	missense	c.89	p.P30L	0.004	HMMPfam_V-set	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
CPS1	1373	genome.wustl.edu	37	2	211471494	211471494	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2	211471494	211471494	A	T	SNP	CPS1	NM_001122633	human	genbank	57_37b	+1	reviewed	missense	c.2039	p.N680I	1.000	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like	superfamily_Carbamoyl phosphate synthetase small subunit N-terminal domain,HMMPfam_CPSase_sm_chain,superfamily_Class I glutamine amidotransferase-like,HMMPfam_GATase,superfamily_PreATP-grasp domain,HMMPfam_CPSase_L_chain,HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like,PatternScan_CPSASE_1,PatternScan_CPSASE_2,superfamily_Carbamoyl phosphate synthetase large subunit connection domain,HMMPfam_CPSase_L_D3,superfamily_Methylglyoxal synthase-like,HMMPfam_MGS	-	no_errors
CSMD2	114784	genome.wustl.edu	37	1	34046410	34046410	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	34046410	34046410	G	A	SNP	CSMD2	NM_052896	human	genbank	57_37b	-1	validated	silent	c.7336	p.L2446	1.000	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042	superfamily_Spermadhesin CUB domain,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Complement control module/SCR domain,HMMPfam_Sushi,HMMSmart_SM00032,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2407	2407	+	RNA	SNP	T	C	C	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	MT	2407	2407	T	C	SNP	ENSG00000210082	ENST00000387347	human	ensembl	57_37b	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000244801	0	genome.wustl.edu	37	5	79286568	79286568	+	RNA	SNP	C	C	T	rs76766140	byCluster;byFrequency;by1000genomes	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	79286568	79286568	C	T	SNP	ENSG00000244801	ENST00000499230	human	ensembl	57_37b	+1	novel	rna	NULL	NULL	0.000	-	-	-	
ETNK1	55500	genome.wustl.edu	37	12	22797164	22797164	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	12	22797164	22797164	T	A	SNP	ETNK1	NM_001039481	human	genbank	57_37b	+1	reviewed	missense	c.703	p.C235S	0.052	superfamily_Protein kinase-like (PK-like)	superfamily_Protein kinase-like (PK-like),HMMPfam_Choline_kinase	-	no_errors
FTSJ3	117246	genome.wustl.edu	37	17	61897442	61897442	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	61897442	61897442	C	T	SNP	FTSJ3	NM_017647	human	genbank	57_37b	-1	reviewed	missense	c.2348	p.R783Q	1.000	HMMPfam_Spb1_C	superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_FtsJ,HMMPfam_Spb1_C	-	no_errors
GMPR2	51292	genome.wustl.edu	37	14	24702445	24702445	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	24702445	24702445	C	T	SNP	GMPR2	NM_016576	human	genbank	57_37b	+1	validated	missense	c.40	p.P14S	0.000	NULL	superfamily_Inosine monophosphate dehydrogenase (IMPDH),HMMPfam_IMPDH,PatternScan_IMP_DH_GMP_RED	-	no_errors
GRLF1	2909	genome.wustl.edu	37	19	47423638	47423666	+	Frame_Shift_Del	DEL	AGATTGAGCACTTGATTAGTTCTCGGTTT	AGATTGAGCACTTGATTAGTTCTCGGTTT	-	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	AGATTGAGCACTTGATTAGTTCTCGGTTT	AGATTGAGCACTTGATTAGTTCTCGGTTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	47423638	47423666	AGATTGAGCACTTGATTAGTTCTCGGTTT	-	DEL	GRLF1	NM_004491	human	genbank	57_37b	+1	reviewed	frame_shift_del	c.1706_1734	p.K569fs	1.000:1.000:1.000:1.000:0.973:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:0.970:0.912:0.950:0.804:0.917:0.985:0.984:0.998:0.998:0.182:0.448:0.973:0.934:0.991:0.989:0.957	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_Ras,HMMSmart_SM00441,HMMPfam_FF,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP	(deletion:cds_exon[47421933,47425613])	no_errors
ILF3	3609	genome.wustl.edu	37	19	10781784	10781784	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	10781784	10781784	C	T	SNP	ILF3	NM_017620	human	genbank	57_37b	+1	reviewed	silent	c.138	p.S46	0.060	NULL	HMMSmart_SM00572,HMMPfam_DZF,superfamily_dsRNA-binding domain-like,HMMPfam_dsrm,HMMSmart_SM00358	-	no_errors
ITSN1	6453	genome.wustl.edu	37	21	35255938	35255938	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	35255938	35255938	C	T	SNP	ITSN1	NM_003024	human	genbank	57_37b	+1	reviewed	missense	c.4639	p.R1547C	1.000	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	HMMSmart_SM00027,superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_DBL homology domain (DH-domain),HMMPfam_RhoGEF,HMMSmart_SM00325,PatternScan_DH_1,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
KRTAP13-3	337960	genome.wustl.edu	37	21	31798069	31798069	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	21	31798069	31798069	C	T	SNP	KRTAP13-3	NM_181622	human	genbank	57_37b	-1	provisional	silent	c.162	p.R54	0.000	HMMPfam_PMG	HMMPfam_PMG	-	no_errors
LOC646804	646804	genome.wustl.edu	37	1	171052735	171052735	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	171052735	171052735	G	A	SNP	LOC646804	XM_929761	human	genbank	57_37b	+1	model	missense	c.103	p.G35S	0.859	NULL	PatternScan_RIBOSOMAL_L23	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9090876	9090876	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9090876	9090876	C	A	SNP	MUC16	NM_024690	human	genbank	57_37b	-1	validated	silent	c.939	p.G313	0.000	NULL	PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain,HMMSmart_SM00200,HMMPfam_SEA	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1271132	1271132	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	11	1271132	1271132	C	T	SNP	MUC5B	NM_002458	human	genbank	57_37b	+1	validated	missense	c.13031	p.T4344I	0.001	NULL	HMMSmart_SM00216,HMMPfam_VWD,HMMPfam_C8,superfamily_Serine proterase inhibitors,HMMPfam_TIL,HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors,PatternScan_VWFC_1,HMMPfam_VWC,HMMSmart_SM00041,HMMPfam_Cys_knot,PatternScan_CTCK_1	-	no_errors
NID1	4811	genome.wustl.edu	37	1	236189206	236189206	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	236189206	236189206	C	T	SNP	NID1	NM_002508	human	genbank	57_37b	-1	reviewed	silent	c.1974	p.G658	0.965	HMMSmart_SM00682,superfamily_GFP-like	HMMSmart_SM00539,HMMPfam_NIDO,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,PatternScan_EGF_2,HMMSmart_SM00682,HMMPfam_G2F,superfamily_GFP-like,PatternScan_EGF_CA,HMMPfam_EGF_CA,superfamily_Thyroglobulin type-1 domain,HMMPfam_Thyroglobulin_1,PatternScan_THYROGLOBULIN_1_1,HMMSmart_SM00211,superfamily_YWTD domain,HMMSmart_SM00135,HMMPfam_Ldl_recept_b,PatternScan_EGF_1	-	no_errors
NOL8	55035	genome.wustl.edu	37	9	95077771	95077771	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9	95077771	95077771	C	T	SNP	NOL8	NM_017948	human	genbank	57_37b	-1	validated	missense	c.1136	p.G379E	0.996	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
OR2T34	127068	genome.wustl.edu	37	1	248737984	248737984	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	248737984	248737984	C	T	SNP	OR2T34	NM_001001821	human	genbank	57_37b	-1	provisional	silent	c.75	p.E25	0.001	superfamily_SSF81321	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
OTOP3	347741	genome.wustl.edu	37	17	72937790	72937790	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	72937790	72937790	G	A	SNP	OTOP3	NM_178233	human	genbank	57_37b	+1	provisional	missense	c.376	p.A126T	0.993	NULL	HMMPfam_DUF270	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	superfamily_Kinase_like,HMMSmart_PI3Kc	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_SSF54236,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMSmart_PI3K_C2,superfamily_C2_CaLB,HMMSmart_C2,HMMPfam_PI3K_C2,superfamily_ARM-type_fold,HMMSmart_PI3Ka,HMMPfam_PI3Ka,superfamily_Kinase_like,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2	-	no_errors
PIK3R1	5295	genome.wustl.edu	37	5	67589269	67589269	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5	67589269	67589269	A	G	SNP	PIK3R1	NM_181523	human	genbank	57_37b	+1	reviewed	silent	c.1257	p.K419	0.839	superfamily_SH2 domain	superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_GTPase activation domain GAP,HMMSmart_SM00324,HMMPfam_RhoGAP,superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2	-	no_errors
RFC4	5984	genome.wustl.edu	37	3	186507944	186507944	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186507944	186507944	G	-	DEL	RFC4	NM_002916	human	genbank	57_37b	-1	reviewed	frame_shift_del	c.983	p.T328fs	1.000	HMMPfam_Rep_fac_C,superfamily_Pol_clamp_load_C	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_Rep_fac_C,superfamily_Pol_clamp_load_C	(deletion:cds_exon[186507931,186508044])	no_errors
RFC4	5984	genome.wustl.edu	37	3	186507946	186507954	+	In_Frame_Del	DEL	GATAATAGA	GATAATAGA	-	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	GATAATAGA	GATAATAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	186507946	186507954	GATAATAGA	-	DEL	RFC4	NM_002916	human	genbank	57_37b	-1	reviewed	in_frame_del	c.981_973	p.SII325in_frame_del	0.965:0.995:0.993:0.181:0.306:0.188:0.180:0.997:1.000	superfamily_Pol_clamp_load_C,HMMPfam_Rep_fac_C	HMMSmart_AAA,HMMPfam_AAA,superfamily_Pol_clamp_load_C,HMMPfam_Rep_fac_C,superfamily_SSF52540	(deletion:cds_exon[186507931,186508044])	no_errors
RPS6KL1	83694	genome.wustl.edu	37	14	75377983	75377984	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	14	75377983	75377984	-	G	INS	RPS6KL1	NM_031464	human	genbank	57_37b	-1	validated	frame_shift_ins	c.539_538	p.D180fs	1.000:1.000	superfamily_Kinase_like	HMMSmart_MIT,HMMPfam_MIT,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
SLC12A6	9990	genome.wustl.edu	37	15	34628702	34628702	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	15	34628702	34628702	C	T	SNP	SLC12A6	NM_133647	human	genbank	57_37b	-1	reviewed	missense	c.180	p.M60I	0.393	NULL	HMMPfam_AA_permease,HMMPfam_KCl_Cotrans_1	-	no_errors
STAC2	342667	genome.wustl.edu	37	17	37369272	37369272	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	17	37369272	37369272	A	C	SNP	STAC2	NM_198993	human	genbank	57_37b	-1	validated	silent	c.1107	p.G369	0.770	superfamily_SH3-domain,HMMPfam_SH3_2	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
TARS2	80222	genome.wustl.edu	37	1	150470165	150470165	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	150470165	150470165	T	C	SNP	TARS2	NM_025150	human	genbank	57_37b	+1	provisional	missense	c.1180	p.S394P	0.000	superfamily_SSF55681,HMMPfam_tRNA-synt_2b	HMMPfam_TGS,superfamily_TGS-like,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,superfamily_SSF55681,HMMPfam_tRNA-synt_2b,superfamily_Anticodon_bd,HMMPfam_HGTP_anticodon	-	no_errors
TROVE2	6738	genome.wustl.edu	37	1	193051360	193051360	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	1	193051360	193051360	C	T	SNP	TROVE2	NM_004600	human	genbank	57_37b	+1	validated	silent	c.1248	p.S416	0.164	NULL	HMMPfam_TROVE	-	no_errors
TSPAN33	340348	genome.wustl.edu	37	7	128807705	128807706	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7	128807705	128807706	CA	-	DEL	TSPAN33	NM_178562	human	genbank	57_37b	+1	validated	frame_shift_del	c.842_843	p.P281fs	0.994:0.443	NULL	HMMPfam_Tetraspannin,superfamily_Tetraspanin	(deletion:cds_exon[128807614,128807715])	no_errors
UBR5	51366	genome.wustl.edu	37	8	103309809	103309809	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8	103309809	103309809	C	T	SNP	UBR5	NM_015902	human	genbank	57_37b	-1	reviewed	silent	c.3450	p.E1150	0.944	NULL	HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1,superfamily_HECT,superfamily_PABP_HYD,HMMPfam_PABP,HMMSmart_PolyA,HMMSmart_HECTc,HMMPfam_HECT	-	no_errors
USP45	85015	genome.wustl.edu	37	6	99887726	99887726	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	6	99887726	99887726	G	C	SNP	USP45	NM_001080481	human	genbank	57_37b	-1	provisional	silent	c.2079	p.G693	0.988	superfamily_Cysteine proteinases,HMMPfam_UCH	HMMPfam_zf-UBP,superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
ZDHHC19	131540	genome.wustl.edu	37	3	195937533	195937533	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3	195937533	195937533	G	A	SNP	ZDHHC19	NM_001039617	human	genbank	57_37b	-1	validated	silent	c.222	p.F74	1.000	NULL	HMMPfam_zf-DHHC	-	no_errors
ZNF536	9745	genome.wustl.edu	37	19	31040294	31040294	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	31040294	31040294	G	T	SNP	ZNF536	NM_014717	human	genbank	57_37b	+1	provisional	missense	c.3768	p.Q1256H	1.000	NULL	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF561	93134	genome.wustl.edu	37	19	9721093	9721093	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	9721093	9721093	T	G	SNP	ZNF561	NM_152289	human	genbank	57_37b	-1	validated	missense	c.1244	p.H415P	0.999	superfamily_SSF57667,HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	superfamily_Krueppel-associated_box,HMMPfam_KRAB,HMMSmart_KRAB,HMMSmart_ZnF_C2H2,superfamily_SSF57667,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZNF576	79177	genome.wustl.edu	37	19	44103077	44103077	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A8-A09D-01A-11W-A019-09	TCGA-A8-A09D-10A-01W-A021-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	19	44103077	44103077	C	G	SNP	ZNF576	NM_001145347	human	genbank	57_37b	+1	validated	missense	c.180	p.D60E	1.000	NULL	HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_zf-C2H2	-	no_errors
