Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ITGA8	8516	broad.mit.edu	36	10	15698561	15698561	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003638	exon14	c.1403delT	p.L468X	.	.	.
ADK	132	broad.mit.edu	36	10	75955023	75955023	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123	exon7	c.508delT	p.F170fs	.	.	.
HPSE2	60495	broad.mit.edu	36	10	100471561	100471561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166244	exon4	c.C625T	p.R209W	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101080297	101080297	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020348	exon1	c.T1163C	p.I388T	.	.	.
GOT1	2805	broad.mit.edu	36	10	101147376	101147376	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002079	exon9	c.G1160A	p.R387Q	.	.	.
GOT1	2805	broad.mit.edu	36	10	101155886	101155886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002079	exon4	c.G535A	p.E179K	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101557179	101557179	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon12	c.A1579C	p.N527H	.	.	.
ABCC2	1244	broad.mit.edu	36	10	101580542	101580542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000392	exon21	c.G2827A	p.E943K	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101633926	101633926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015221	exon15	c.C3829T	p.R1277W	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101706901	101706901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015221	exon4	c.G320A	p.R107Q	.	.	.
CHUK	1147	broad.mit.edu	36	10	101949760	101949760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001278	exon16	c.C1687T	p.R563C	.	.	.
CHUK	1147	broad.mit.edu	36	10	101968805	101968805	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001278	exon7	c.A639C	p.E213D	.	.	.
CWF19L1	55280	broad.mit.edu	36	10	101987800	101987800	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018294	exon11	c.G1223T	p.R408I	.	.	.
PKD2L1	9033	broad.mit.edu	36	10	102041161	102041161	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016112	exon12	c.G1894A	p.E632K	.	.	.
PAX2	5076	broad.mit.edu	36	10	102499536	102499536	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003988	exon2	c.C87T	p.N29N	.	.	.
FAM178A	55719	broad.mit.edu	36	10	102667012	102667012	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018121	exon3	c.G880T	p.D294Y	.	.	.
FAM178A	55719	broad.mit.edu	36	10	102674227	102674227	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018121	exon5	c.T1479G	p.N493K	.	.	.
SEMA4G	57715	broad.mit.edu	36	10	102728855	102728855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017893	exon8	c.C820A	p.L274M	.	.	.
SEMA4G	57715	broad.mit.edu	36	10	102730954	102730954	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017893	exon13	c.C1683A	p.G561G	.	.	.
C10orf2	56652	broad.mit.edu	36	10	102739479	102739479	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021830	exon2	c.C1332T	p.F444F	.	.	.
PDZD7	79955	broad.mit.edu	36	10	102767915	102767915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195263	exon9	c.C1453T	p.R485C	.	.	.
POLL	27343	broad.mit.edu	36	10	103332579	103332579	+	Silent	SNP	G	A	A	rs41291484	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174085	exon7	c.C849T	p.I283I	.	.	.
NPM3	10360	broad.mit.edu	36	10	103533024	103533024	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006993	exon1	c.C114A	p.F38L	.	.	.
KCNIP2	30819	broad.mit.edu	36	10	103577691	103577691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173194	exon6	c.C512T	p.T171M	.	.	.
C10orf76	79591	broad.mit.edu	36	10	103597290	103597290	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024541	exon26	c.C2055A	p.F685L	.	.	.
C10orf76	79591	broad.mit.edu	36	10	103751779	103751779	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024541	exon15	c.G1089A	p.Q363Q	.	.	.
PPRC1	23082	broad.mit.edu	36	10	103888401	103888401	+	Silent	SNP	G	A	A	rs9971147	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015062	exon3	c.G378A	p.S126S	.	.	.
PPRC1	23082	broad.mit.edu	36	10	103890543	103890543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015062	exon5	c.G2288A	p.R763H	.	.	.
NFKB2	4791	broad.mit.edu	36	10	104146046	104146046	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077494	exon3	c.C68A	p.S23Y	.	.	.
CYP17A1	1586	broad.mit.edu	36	10	104587069	104587069	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000102	exon1	c.T40C	p.Y14H	.	.	.
C10orf32	119032	broad.mit.edu	36	10	104610139	104610139	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144591	exon2	c.G202T	p.D68Y	.	.	.
NT5C2	22978	broad.mit.edu	36	10	104851033	104851033	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134373	exon6	c.C430T	p.R144X	.	.	.
GTPBP4	23560	broad.mit.edu	36	10	1050223	1050223	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012341	exon15	c.C1579A	p.L527I	.	.	.
PDCD11	22984	broad.mit.edu	36	10	105163739	105163739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014976	exon10	c.C1212A	p.N404K	.	.	.
NEURL	9148	broad.mit.edu	36	10	105340109	105340109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004210	exon6	c.G1715A	p.R572H	.	.	.
SH3PXD2A	9644	broad.mit.edu	36	10	105351575	105351575	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014631	exon14	c.G3306A	p.E1102E	.	.	.
SLK	9748	broad.mit.edu	36	10	105752212	105752212	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014720	exon9	c.A1286C	p.K429T	.	.	.
SLK	9748	broad.mit.edu	36	10	105771440	105771440	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014720	exon18	c.G3520A	p.E1174K	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105799217	105799217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000494	exon29	c.G2167A	p.E723K	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105928805	105928805	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025145	exon19	c.A2432C	p.K811T	.	.	.
ITPRIP	85450	broad.mit.edu	36	10	106065167	106065167	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033397	exon3	c.C633T	p.F211F	.	.	.
CCDC147	159686	broad.mit.edu	36	10	106199939	106199939	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008723	exon17	c.G2497T	p.E833X	.	.	.
SORCS3	22986	broad.mit.edu	36	10	106972982	106972982	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014978	exon20	c.C2853T	p.F951F	.	.	.
SORCS3	22986	broad.mit.edu	36	10	107012133	107012133	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014978	exon26	c.G3498T	p.E1166D	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108459029	108459029	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052918	exon7	c.T1085G	p.F362C	.	.	.
SMC3	9126	broad.mit.edu	36	10	112349520	112349520	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005445	exon21	c.G2387T	p.R796I	.	.	.
SHOC2	8036	broad.mit.edu	36	10	112757365	112757365	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007373	exon6	c.G1248T	p.K416N	.	.	.
GPAM	57678	broad.mit.edu	36	10	113918234	113918234	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020918	exon11	c.G933T	p.E311D	.	.	.
GPAM	57678	broad.mit.edu	36	10	113918630	113918630	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020918	exon10	c.G865T	p.D289Y	.	.	.
TECTB	6975	broad.mit.edu	36	10	114034291	114034291	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058222	exon2	c.C85A	p.L29I	.	.	.
TCF7L2	6934	broad.mit.edu	36	10	114915308	114915308	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146284	exon13	c.A1293C	p.E431D	.	.	.
HABP2	3026	broad.mit.edu	36	10	115327792	115327792	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177660	exon6	c.C388T	p.P130S	.	.	.
TDRD1	56165	broad.mit.edu	36	10	115976972	115976972	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198795	exon23	c.C3327T	p.V1109V	.	.	.
VWA2	340706	broad.mit.edu	36	10	116004774	116004774	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198496	exon4	c.G238A	p.G80S	.	.	.
FAM160B1	57700	broad.mit.edu	36	10	116580672	116580672	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020940	exon2	c.G117T	p.E39D	.	.	.
PNLIP	5406	broad.mit.edu	36	10	118295622	118295622	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000936	exon2	c.C28A	p.L10M	.	.	.
PNLIPRP1	5407	broad.mit.edu	36	10	118341958	118341958	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006229	exon4	c.A245T	p.N82I	.	.	.
PNLIPRP1	5407	broad.mit.edu	36	10	118350669	118350669	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006229	exon10	c.C1029A	p.F343L	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118959400	118959400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181840	exon3	c.C755T	p.S252L	.	.	.
EMX2	2018	broad.mit.edu	36	10	119295199	119295199	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004098	exon2	c.G473A	p.R158Q	.	.	.
RAB11FIP2	22841	broad.mit.edu	36	10	119795338	119795338	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014904	exon1	c.T327G	p.F109L	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120785648	120785648	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003750	exon22	c.G4042T	p.E1348X	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120791642	120791642	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003750	exon19	c.G3380T	p.R1127I	.	.	.
BAG3	9531	broad.mit.edu	36	10	121426424	121426424	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004281	exon4	c.G1368A	p.E456E	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121531168	121531168	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014937	exon3	c.G210T	p.Q70H	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121541482	121541482	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014937	exon5	c.A556T	p.N186Y	.	.	.
INPP5F	22876	broad.mit.edu	36	10	121561318	121561318	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014937	exon15	c.G1747T	p.E583X	.	.	.
C10orf119	79892	broad.mit.edu	36	10	121606842	121606842	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024834	exon5	c.G427T	p.E143X	.	.	.
C10orf119	79892	broad.mit.edu	36	10	121608668	121608668	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024834	exon3	c.G160A	p.E54K	.	.	.
SEC23IP	11196	broad.mit.edu	36	10	121648196	121648196	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007190	exon2	c.C431T	p.A144V	.	.	.
DHTKD1	55526	broad.mit.edu	36	10	12166664	12166664	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018706	exon3	c.G430T	p.D144Y	.	.	.
WDR11	55717	broad.mit.edu	36	10	122633369	122633369	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018117	exon14	c.C1827T	p.N609N	.	.	.
WDR11	55717	broad.mit.edu	36	10	122640304	122640304	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018117	exon19	c.C2430A	p.I810I	.	.	.
ATE1	11101	broad.mit.edu	36	10	123649457	123649457	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001976	exon7	c.G856T	p.A286S	.	.	.
TACC2	10579	broad.mit.edu	36	10	123832186	123832186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206862	exon4	c.G181A	p.A61T	.	.	.
HTRA1	5654	broad.mit.edu	36	10	124238953	124238953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002775	exon3	c.C598T	p.P200S	.	.	.
HTRA1	5654	broad.mit.edu	36	10	124258205	124258205	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002775	exon6	c.G1049T	p.G350V	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124329162	124329162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007329	exon10	c.G758A	p.G253D	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124329258	124329258	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007329	exon10	c.G854A	p.G285E	.	.	.
CHST15	51363	broad.mit.edu	36	10	125794360	125794360	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon3	c.C612A	p.F204L	.	.	.
METTL10	399818	broad.mit.edu	36	10	126444109	126444109	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212554	exon5	c.A458C	p.K153T	.	.	.
FAM175B	23172	broad.mit.edu	36	10	126507427	126507427	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032182	exon6	c.G571T	p.E191X	.	.	.
CTBP2	1488	broad.mit.edu	36	10	126706294	126706294	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022802	exon1	c.A25C	p.N9H	.	.	.
ADAM12	8038	broad.mit.edu	36	10	127957502	127957502	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003474	exon3	c.G232T	p.E78X	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128104604	128104604	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon8	c.A2007C	p.Q669H	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128108360	128108360	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon7	c.T1947C	p.H649H	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183024	128183024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon3	c.G735A	p.P245P	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183303	128183303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon3	c.C456T	p.R152R	.	.	.
DOCK1	1793	broad.mit.edu	36	10	128688483	128688483	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001380	exon10	c.C907T	p.R303C	.	.	.
PTPRE	5791	broad.mit.edu	36	10	129771100	129771100	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006504	exon21	c.C2043A	p.F681L	.	.	.
MKI67	4288	broad.mit.edu	36	10	129792730	129792730	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.C6284A	p.T2095N	.	.	.
MKI67	4288	broad.mit.edu	36	10	129795795	129795795	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.G3219A	p.A1073A	.	.	.
GLRX3	10539	broad.mit.edu	36	10	131867635	131867635	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199868	exon11	c.G997A	p.G333R	.	.	.
OPTN	10133	broad.mit.edu	36	10	13207536	13207536	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008212	exon10	c.G1111A	p.E371K	.	.	.
MCM10	55388	broad.mit.edu	36	10	13254449	13254449	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018518	exon4	c.A417G	p.K139K	.	.	.
MCM10	55388	broad.mit.edu	36	10	13277249	13277249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018518	exon14	c.C1948A	p.L650M	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132834821	132834821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174937	exon7	c.G1127A	p.R376H	.	.	.
UCMA	221044	broad.mit.edu	36	10	13311636	13311636	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145314	exon4	c.C300T	p.F100F	.	.	.
PPP2R2D	55844	broad.mit.edu	36	10	133611210	133611210	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018461	exon6	c.G909A	p.A303A	.	.	.
INPP5A	3632	broad.mit.edu	36	10	134313913	134313913	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005539	exon4	c.G220T	p.E74X	.	.	.
ECHS1	1892	broad.mit.edu	36	10	135028214	135028214	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004092	exon7	c.G745T	p.E249X	.	.	.
CYP2E1	1571	broad.mit.edu	36	10	135195714	135195714	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000773	exon4	c.A584C	p.K195T	.	.	.
BEND7	222389	broad.mit.edu	36	10	13582070	13582070	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152751	exon3	c.A6C	p.E2D	.	.	.
PRPF18	8559	broad.mit.edu	36	10	13682308	13682308	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003675	exon3	c.T203G	p.L68R	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13776003	13776003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018027	exon15	c.G1018A	p.D340N	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13843663	13843663	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018027	exon8	c.G454T	p.D152Y	.	.	.
FAM188A	80013	broad.mit.edu	36	10	15864212	15864212	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024948	exon14	c.C1136A	p.S379Y	.	.	.
CUBN	8029	broad.mit.edu	36	10	16951658	16951658	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon59	c.C9437A	p.S3146Y	.	.	.
CUBN	8029	broad.mit.edu	36	10	16988263	16988263	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon50	c.T7857G	p.D2619E	.	.	.
CUBN	8029	broad.mit.edu	36	10	17036548	17036548	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon32	c.C4701T	p.Y1567Y	.	.	.
CUBN	8029	broad.mit.edu	36	10	17166457	17166457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon17	c.G2120A	p.R707H	.	.	.
TRDMT1	1787	broad.mit.edu	36	10	17250881	17250881	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004412	exon3	c.G216T	p.M72I	.	.	.
ST8SIA6	338596	broad.mit.edu	36	10	17403219	17403219	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004470	exon8	c.C861T	p.L287L	.	.	.
ST8SIA6	338596	broad.mit.edu	36	10	17409076	17409076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004470	exon6	c.G578A	p.G193E	.	.	.
SLC39A12	221074	broad.mit.edu	36	10	18310291	18310291	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145195	exon6	c.G969T	p.K323N	.	.	.
NSUN6	221078	broad.mit.edu	36	10	18943480	18943480	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182543	exon5	c.G490T	p.E164X	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20546376	20546376	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032812	exon11	c.T1138C	p.C380R	.	.	.
C10orf140	387640	broad.mit.edu	36	10	21844857	21844857	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207371	exon4	c.A1901G	p.K634R	.	.	.
MLLT10	8028	broad.mit.edu	36	10	21999479	21999479	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195626	exon9	c.C891A	p.V297V	.	.	.
MLLT10	8028	broad.mit.edu	36	10	22002641	22002641	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195626	exon10	c.G1408T	p.G470X	.	.	.
SPAG6	9576	broad.mit.edu	36	10	22697431	22697431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172242	exon4	c.G290A	p.R97H	.	.	.
SPAG6	9576	broad.mit.edu	36	10	22739990	22739990	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012443	exon10	c.C1339T	p.R447X	.	.	.
PIP4K2A	5305	broad.mit.edu	36	10	23043187	23043187	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005028	exon1	c.G75A	p.A25A	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23366250	23366250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173081	exon19	c.G2455A	p.E819K	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24924721	24924721	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020824	exon19	c.G3643T	p.D1215Y	.	.	.
ENKUR	219670	broad.mit.edu	36	10	25313717	25313717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145010	exon5	c.G718A	p.D240N	.	.	.
THNSL1	79896	broad.mit.edu	36	10	25352255	25352255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024838	exon3	c.C97A	p.L33I	.	.	.
THNSL1	79896	broad.mit.edu	36	10	25352706	25352706	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024838	exon3	c.A548C	p.K183T	.	.	.
GPR158	57512	broad.mit.edu	36	10	25741369	25741369	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon4	c.C1296T	p.F432F	.	.	.
GPR158	57512	broad.mit.edu	36	10	25901765	25901765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon7	c.G1696A	p.D566N	.	.	.
GPR158	57512	broad.mit.edu	36	10	25926868	25926868	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020752	exon11	c.C2307T	p.C769C	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26425328	26425328	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon16	c.T1575G	p.N525K	 MYO3A,ovary,NS,Substitution - Missense,0 	.	.
MYO3A	53904	broad.mit.edu	36	10	26503137	26503137	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon30	c.G3938A	p.R1313H	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27363993	27363993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014915	exon24	c.C3392T	p.S1131F	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27364216	27364216	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014915	exon24	c.G3169T	p.D1057Y	.	.	.
MASTL	84930	broad.mit.edu	36	10	27490088	27490088	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172303	exon4	c.T524G	p.F175C	.	.	.
PTCHD3	374308	broad.mit.edu	36	10	27727472	27727472	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034842	exon4	c.C2061A	p.V687V	.	.	.
ZMYND11	10771	broad.mit.edu	36	10	278048	278048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212479	exon10	c.G916A	p.D306N	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28324014	28324014	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon2	c.G64A	p.E22K	.	.	.
WAC	51322	broad.mit.edu	36	10	28940731	28940731	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_100486	exon9	c.G1002A	p.P334P	.	.	.
SVIL	6840	broad.mit.edu	36	10	29822178	29822178	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon19	c.C2712T	p.F904F	.	.	.
ZEB1	6935	broad.mit.edu	36	10	31831298	31831298	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030751	exon4	c.C336T	p.C112C	.	.	.
EPC1	80314	broad.mit.edu	36	10	32621524	32621524	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025209	exon5	c.C721A	p.L241I	.	.	.
CCDC7	221016	broad.mit.edu	36	10	32894520	32894520	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145023	exon15	c.A1163C	p.K388T	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33230522	33230522	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133376	exon16	c.G2379A	p.P793P	.	.	.
ITGB1	3688	broad.mit.edu	36	10	33237323	33237323	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133376	exon15	c.A2310C	p.K770N	.	.	.
PARD3	56288	broad.mit.edu	36	10	34440373	34440373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184791	exon21	c.C3465T	p.N1155N	.	.	.
CUL2	8453	broad.mit.edu	36	10	35367986	35367986	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198779	exon9	c.C784T	p.R262X	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37459191	37459191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052997	exon3	c.C221T	p.A74V	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37476306	37476306	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052997	exon9	c.T1290C	p.S430S	.	.	.
ANKRD30A	91074	broad.mit.edu	36	10	37548144	37548144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052997	exon34	c.G3330A	p.G1110G	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38346272	38346272	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006954	exon4	c.G202T	p.E68X	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38384419	38384419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006954	exon5	c.C1361T	p.S454L	.	.	.
ZNF33A	7581	broad.mit.edu	36	10	38384648	38384648	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006954	exon5	c.T1590C	p.C530C	.	.	.
ZNF37A	7587	broad.mit.edu	36	10	38447739	38447739	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007094	exon8	c.A1654C	p.N552H	.	.	.
ZNF33B	7582	broad.mit.edu	36	10	42410009	42410009	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006955	exon5	c.C395A	p.S132Y	.	.	.
BMS1	9790	broad.mit.edu	36	10	42599904	42599904	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon2	c.C56G	p.A19G	.	.	.
RET	5979	broad.mit.edu	36	10	42932168	42932168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020630	exon12	c.C2267T	p.A756V	.	.	.
ZNF239	8187	broad.mit.edu	36	10	43372543	43372543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005674	exon2	c.C991T	p.R331C	.	.	.
ZNF239	8187	broad.mit.edu	36	10	43372864	43372864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005674	exon2	c.C670T	p.L224F	.	.	.
ZNF32	7580	broad.mit.edu	36	10	43459893	43459893	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006973	exon3	c.C433T	p.R145X	.	.	.
OR13A1	79290	broad.mit.edu	36	10	45119160	45119160	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004297	exon4	c.C717T	p.I239I	.	.	.
ALOX5	240	broad.mit.edu	36	10	45227682	45227682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000698	exon4	c.G469A	p.D157N	.	.	.
MARCH8	220972	broad.mit.edu	36	10	45273765	45273765	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002266	exon7	c.C804A	p.I268I	.	.	.
MARCH8	220972	broad.mit.edu	36	10	45276738	45276738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002266	exon5	c.G370A	p.E124K	.	.	.
ANUBL1	93550	broad.mit.edu	36	10	45463755	45463755	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128324	exon5	c.C562T	p.R188C	.	.	.
FAM21C	253725	broad.mit.edu	36	10	45568110	45568110	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169106	exon12	c.G1072T	p.G358C	.	.	.
FAM21C	253725	broad.mit.edu	36	10	45570419	45570419	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169106	exon15	c.G1270A	p.V424I	.	.	.
FAM21C	253725	broad.mit.edu	36	10	45570538	45570538	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169106	exon15	c.C1389A	p.F463L	.	.	.
FAM21C	253725	broad.mit.edu	36	10	45585063	45585063	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169106	exon20	c.C2030T	p.A677V	.	.	.
GDF10	2662	broad.mit.edu	36	10	48046764	48046764	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004962	exon3	c.G1249A	p.V417I	.	.	.
GDF10	2662	broad.mit.edu	36	10	48048836	48048836	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004962	exon2	c.G1056A	p.S352S	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49063638	49063638	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018071	exon18	c.C2323T	p.R775C	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50351632	50351632	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000124	exon14	c.A2606G	p.D869G	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50394332	50394332	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170753	exon2	c.C835T	p.R279C	.	.	.
ERCC6	2074	broad.mit.edu	36	10	50402137	50402137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000124	exon5	c.G1345A	p.V449M	.	.	.
SLC18A3	6572	broad.mit.edu	36	10	50489677	50489677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003055	exon1	c.C885T	p.A295A	.	.	.
SLC18A3	6572	broad.mit.edu	36	10	50489932	50489932	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003055	exon1	c.C1140T	p.F380F	.	.	.
CHAT	1103	broad.mit.edu	36	10	50497883	50497883	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142929	exon3	c.T140G	p.I47S	.	.	.
PARG	8505	broad.mit.edu	36	10	51262617	51262617	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006327	exon7	c.C523T	p.R175X	.	.	.
SGMS1	259230	broad.mit.edu	36	10	51741137	51741137	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147156	exon9	c.C786A	p.L262L	.	.	.
SGMS1	259230	broad.mit.edu	36	10	51757067	51757067	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147156	exon8	c.T645G	p.F215L	.	.	.
AKR1C4	1109	broad.mit.edu	36	10	5237767	5237767	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001818	exon4	c.C417T	p.F139F	.	.	.
TUBAL3	79861	broad.mit.edu	36	10	5426206	5426206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171864	exon4	c.G495A	p.T165T	.	.	.
TUBAL3	79861	broad.mit.edu	36	10	5426333	5426333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171864	exon4	c.G368A	p.R123K	.	.	.
NET1	10276	broad.mit.edu	36	10	5478793	5478793	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005863	exon1	c.T65C	p.V22A	.	.	.
Unknown	0	broad.mit.edu	36	10	55236580	55236580	+	IGR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142771	exon35	c.A4814C	p.K1605T	.	.	.
Unknown	0	broad.mit.edu	36	10	55238843	55238843	+	IGR	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142769	exon36	c.A4988G	p.N1663S	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55251713	55251713	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033056	exon33	c.G5779T	p.E1927X	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252418	55252418	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033056	exon33	c.T5074A	p.S1692T	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55582995	55582995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142769	exon16	c.C1691A	p.A564D	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55666672	55666672	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142769	exon10	c.C917T	p.T306M	.	.	.
C10orf18	54906	broad.mit.edu	36	10	5843323	5843323	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017782	exon19	c.G7057A	p.E2353K	.	.	.
FBXO18	84893	broad.mit.edu	36	10	5992932	5992932	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178150	exon6	c.C1046T	p.A349V	.	.	.
FBXO18	84893	broad.mit.edu	36	10	6009479	6009479	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178150	exon19	c.A2798C	p.K933T	.	.	.
IL2RA	3559	broad.mit.edu	36	10	6101884	6101884	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000417	exon5	c.G610A	p.E204K	.	.	.
ANK3	288	broad.mit.edu	36	10	61485489	61485489	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon42	c.C12998A	p.S4333Y	.	.	.
ANK3	288	broad.mit.edu	36	10	61499106	61499106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020987	exon37	c.C11539A	p.L3847I	.	.	.
RHOBTB1	9886	broad.mit.edu	36	10	62304776	62304776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014836	exon9	c.C1757T	p.A586V	.	.	.
TMEM26	219623	broad.mit.edu	36	10	62858741	62858741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178505	exon4	c.C554T	p.A185V	.	.	.
ARID5B	84159	broad.mit.edu	36	10	63522313	63522313	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032199	exon10	c.C3085T	p.R1029W	.	.	.
EGR2	1959	broad.mit.edu	36	10	64243274	64243274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136179	exon3	c.G980A	p.R327H	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64607585	64607585	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004241	exon20	c.C6411G	p.D2137E	.	.	.
LRRTM3	347731	broad.mit.edu	36	10	68357140	68357140	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178011	exon2	c.C460T	p.R154W	.	.	.
HERC4	26091	broad.mit.edu	36	10	69443918	69443918	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022079	exon9	c.G940T	p.G314X	.	.	.
DNA2	1763	broad.mit.edu	36	10	69862018	69862018	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080449	exon12	c.T2082G	p.S694R	.	.	.
DNA2	1763	broad.mit.edu	36	10	69888919	69888919	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080449	exon5	c.G925T	p.D309Y	.	.	.
TET1	80312	broad.mit.edu	36	10	70002962	70002962	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon2	c.G861A	p.L287L	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70695456	70695456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025130	exon17	c.C2482T	p.R828W	.	.	.
COL13A1	1305	broad.mit.edu	36	10	71324463	71324463	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080800	exon11	c.G630T	p.K210N	.	.	.
KIAA1274	27143	broad.mit.edu	36	10	71977160	71977160	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014431	exon18	c.G2214A	p.T738T	.	.	.
C10orf27	219793	broad.mit.edu	36	10	72202307	72202307	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152710	exon10	c.G939T	p.K313N	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72716466	72716466	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170744	exon5	c.G567T	p.K189N	.	.	.
SLC29A3	55315	broad.mit.edu	36	10	72786003	72786003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174098	exon5	c.C770T	p.A257V	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7284453	7284453	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon13	c.G1482T	p.E494D	.	.	.
CDH23	64072	broad.mit.edu	36	10	73076262	73076262	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171930	exon13	c.C1331T	p.A444V	.	.	.
CDH23	64072	broad.mit.edu	36	10	73237390	73237390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171933	exon12	c.G1700T	p.S567I	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7325554	7325554	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon9	c.A1092C	p.K364N	.	.	.
OIT3	170392	broad.mit.edu	36	10	74328677	74328677	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152635	exon2	c.C311A	p.A104D	.	.	.
OIT3	170392	broad.mit.edu	36	10	74354196	74354196	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152635	exon7	c.G1155T	p.G385G	.	.	.
NUDT13	25961	broad.mit.edu	36	10	74556461	74556461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015901	exon8	c.G728A	p.R243H	.	.	.
ECD	11319	broad.mit.edu	36	10	74566590	74566590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135753	exon12	c.G1453A	p.E485K	.	.	.
ANXA7	310	broad.mit.edu	36	10	74809959	74809959	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001156	exon10	c.C925T	p.R309C	.	.	.
ZMYND17	118490	broad.mit.edu	36	10	74854347	74854347	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024593	exon7	c.A1353C	p.Q451H	.	.	.
ZMYND17	118490	broad.mit.edu	36	10	74857886	74857886	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024593	exon2	c.C163A	p.P55T	.	.	.
USP54	159195	broad.mit.edu	36	10	74966126	74966126	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152586	exon9	c.G1051T	p.D351Y	.	.	.
SYNPO2L	79933	broad.mit.edu	36	10	75076888	75076888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024875	exon2	c.G1856A	p.G619D	.	.	.
SYNPO2L	79933	broad.mit.edu	36	10	75077662	75077662	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024875	exon2	c.C1082A	p.S361Y	.	.	.
AP3M1	26985	broad.mit.edu	36	10	75556063	75556063	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012095	exon7	c.C860A	p.S287Y	.	.	.
DUSP13	51207	broad.mit.edu	36	10	76524566	76524566	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007273	exon6	c.G750T	p.E250D	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78317035	78317035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161353	exon28	c.C3655T	p.L1219F	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78383577	78383577	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014797	exon21	c.G2310T	p.E770D	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79423107	79423107	+	Missense_Mutation	SNP	C	A	A	rs57636571	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007055	exon20	c.G2641T	p.D881Y	.	.	.
POLR3A	11128	broad.mit.edu	36	10	79434543	79434543	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007055	exon16	c.C2184T	p.I728I	.	.	.
TAF3	83860	broad.mit.edu	36	10	8046653	8046653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031923	exon3	c.G1174A	p.D392N	.	.	.
GATA3	2625	broad.mit.edu	36	10	8140476	8140476	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002051	exon3	c.G444A	p.P148P	.	.	.
SFTPD	6441	broad.mit.edu	36	10	81687840	81687840	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003019	exon8	c.C876T	p.R292R	.	.	.
ANXA11	311	broad.mit.edu	36	10	81913864	81913864	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145869	exon10	c.G874T	p.E292X	.	.	.
MAT1A	4143	broad.mit.edu	36	10	82033664	82033664	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000429	exon3	c.G280T	p.D94Y	.	.	.
TUBB8	347688	broad.mit.edu	36	10	83719	83719	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177987	exon4	c.G613A	p.E205K	.	.	.
NRG3	10718	broad.mit.edu	36	10	84108502	84108502	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165973	exon3	c.C188A	p.S63Y	.	.	.
NRG3	10718	broad.mit.edu	36	10	84734985	84734985	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165973	exon11	c.T1144G	p.S382A	.	.	.
LRIT1	26103	broad.mit.edu	36	10	85981917	85981917	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015613	exon4	c.G1618T	p.A540S	.	.	.
GRID1	2894	broad.mit.edu	36	10	87397093	87397093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon13	c.G2039A	p.G680D	.	.	.
GRID1	2894	broad.mit.edu	36	10	87472846	87472846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon12	c.C1891T	p.R631C	.	.	.
GRID1	2894	broad.mit.edu	36	10	87474260	87474260	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon11	c.T1687G	p.F563V	.	.	.
GRID1	2894	broad.mit.edu	36	10	87605879	87605879	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon7	c.T1000A	p.F334I	.	.	.
GRID1	2894	broad.mit.edu	36	10	87665968	87665968	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017551	exon5	c.G735T	p.E245D	.	.	.
GRID1	2894	broad.mit.edu	36	10	87888559	87888559	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon4	c.C723T	p.N241N	.	.	.
LDB3	11155	broad.mit.edu	36	10	88429216	88429216	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080115	exon2	c.T206G	p.I69S	.	.	.
MMRN2	79812	broad.mit.edu	36	10	88693251	88693251	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024756	exon6	c.G1270A	p.D424N	.	.	.
PAPSS2	9060	broad.mit.edu	36	10	89477059	89477059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004670	exon8	c.G904A	p.V302I	.	.	.
PTEN	5728	broad.mit.edu	36	10	89614247	89614247	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon1	c.G41T	p.R14M	 PTEN,vulva,NS,Substitution - Missense,+1 	.	.
PTEN	5728	broad.mit.edu	36	10	89682885	89682885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000314	exon5	c.G389A	p.R130Q	 PTEN,central_nervous_system,brain,Substitution - Nonsense,+1 	.	.
LIPJ	142910	broad.mit.edu	36	10	90343870	90343870	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010939	exon5	c.C318A	p.F106L	.	.	.
LIPF	8513	broad.mit.edu	36	10	90421605	90421605	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004190	exon6	c.G572T	p.R191I	.	.	.
LIPN	643418	broad.mit.edu	36	10	90514278	90514278	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102469	exon3	c.C358T	p.R120W	.	.	.
LIPN	643418	broad.mit.edu	36	10	90527866	90527866	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102469	exon9	c.C1084A	p.L362I	.	.	.
IFIT3	3437	broad.mit.edu	36	10	91089749	91089749	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001549	exon2	c.A1357G	p.I453V	.	.	.
IFIT1	3434	broad.mit.edu	36	10	91152329	91152329	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001548	exon2	c.A317G	p.Y106C	.	.	.
SLC16A12	387700	broad.mit.edu	36	10	91185992	91185992	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213606	exon7	c.C1093A	p.L365I	.	.	.
SLC16A12	387700	broad.mit.edu	36	10	91190985	91190985	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213606	exon5	c.C308A	p.P103Q	.	.	.
PANK1	53354	broad.mit.edu	36	10	91338481	91338481	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_148978	exon6	c.C970A	p.L324I	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91487549	91487549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016195	exon20	c.G2851A	p.E951K	.	.	.
HTR7	3363	broad.mit.edu	36	10	92493378	92493378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019859	exon3	c.G1345A	p.V449I	.	.	.
ANKRD1	27063	broad.mit.edu	36	10	92665913	92665913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014391	exon6	c.G646T	p.D216Y	.	.	.
ANKRD1	27063	broad.mit.edu	36	10	92670017	92670017	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014391	exon2	c.G96T	p.E32D	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93248654	93248654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182765	exon17	c.C1801T	p.P601S	.	.	.
PPP1R3C	5507	broad.mit.edu	36	10	93380257	93380257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005398	exon2	c.G361A	p.D121N	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93562928	93562928	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025235	exon2	c.G408T	p.K136N	.	.	.
TNKS2	80351	broad.mit.edu	36	10	93569245	93569245	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025235	exon5	c.C584T	p.A195V	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93692204	93692204	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003972	exon4	c.G299A	p.R100Q	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93709565	93709565	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003972	exon10	c.G1034T	p.R345I	.	.	.
CPEB3	22849	broad.mit.edu	36	10	93841585	93841585	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178137	exon8	c.C1627A	p.P543T	.	.	.
IDE	3416	broad.mit.edu	36	10	94257862	94257862	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004969	exon8	c.G1141A	p.E381K	.	.	.
KIF11	3832	broad.mit.edu	36	10	94383465	94383465	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004523	exon14	c.T1808G	p.I603S	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94678153	94678153	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013848	exon9	c.G951A	p.S317S	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94723937	94723937	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013848	exon18	c.A1906G	p.R636G	.	.	.
EXOC6	54536	broad.mit.edu	36	10	94808033	94808033	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013848	exon22	c.A2331G	p.K777K	.	.	.
CYP26A1	1592	broad.mit.edu	36	10	94824700	94824700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057157	exon3	c.G382A	p.E128K	.	.	.
CYP26A1	1592	broad.mit.edu	36	10	94825622	94825622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057157	exon5	c.C707T	p.T236M	.	.	.
MYOF	26509	broad.mit.edu	36	10	95079550	95079550	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133337	exon43	c.G4804T	p.E1602X	.	.	.
MYOF	26509	broad.mit.edu	36	10	95231934	95231934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133337	exon1	c.G8A	p.R3Q	.	.	.
CEP55	55165	broad.mit.edu	36	10	95266918	95266918	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018131	exon6	c.A916C	p.K306Q	.	.	.
PDE6C	5146	broad.mit.edu	36	10	95390681	95390681	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006204	exon14	c.G1752T	p.K584N	.	.	.
LGI1	9211	broad.mit.edu	36	10	95547077	95547077	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005097	exon8	c.C1201A	p.L401M	.	.	.
PLCE1	51196	broad.mit.edu	36	10	96063121	96063121	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016341	exon28	c.C6124A	p.L2042M	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96090069	96090069	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022451	exon16	c.G1734T	p.L578F	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96094675	96094675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022451	exon12	c.G1395T	p.K465N	.	.	.
NOC3L	64318	broad.mit.edu	36	10	96099096	96099096	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022451	exon10	c.G1158T	p.K386N	.	.	.
HELLS	3070	broad.mit.edu	36	10	96344515	96344515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018063	exon19	c.G2162A	p.R721H	.	.	.
PDLIM1	9124	broad.mit.edu	36	10	96997053	96997053	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020992	exon5	c.G594T	p.K198N	.	.	.
PDLIM1	9124	broad.mit.edu	36	10	97021486	97021486	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020992	exon2	c.G142T	p.D48Y	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97125747	97125747	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034955	exon17	c.C1776A	p.F592L	.	.	.
SORBS1	10580	broad.mit.edu	36	10	97134018	97134018	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034957	exon9	c.C745A	p.L249M	.	.	.
ALDH18A1	5832	broad.mit.edu	36	10	97356550	97356550	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017423	exon18	c.C2341A	p.L781I	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97908300	97908300	+	Missense_Mutation	SNP	C	T	T	rs61731062	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014803	exon6	c.C2231T	p.A744V	.	.	.
ZNF518A	9849	broad.mit.edu	36	10	97909066	97909066	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014803	exon6	c.A2997G	p.P999P	.	.	.
DNTT	1791	broad.mit.edu	36	10	98078574	98078574	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004088	exon8	c.G1110T	p.K370N	.	.	.
TM9SF3	56889	broad.mit.edu	36	10	98301084	98301084	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020123	exon7	c.G867T	p.L289L	.	.	.
TM9SF3	56889	broad.mit.edu	36	10	98302716	98302716	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020123	exon6	c.G751T	p.D251Y	.	.	.
TM9SF3	56889	broad.mit.edu	36	10	98326502	98326502	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020123	exon2	c.G177T	p.K59N	.	.	.
PIK3AP1	118788	broad.mit.edu	36	10	98345375	98345375	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152309	exon17	c.G2367A	p.P789P	.	.	.
PIK3AP1	118788	broad.mit.edu	36	10	98459543	98459543	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152309	exon2	c.C201T	p.V67V	.	.	.
SLIT1	6585	broad.mit.edu	36	10	98793143	98793143	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003061	exon19	c.C1971T	p.F657F	.	.	.
ARHGAP19	84986	broad.mit.edu	36	10	99009324	99009324	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032900	exon5	c.A665G	p.D222G	.	.	.
PGAM1	5223	broad.mit.edu	36	10	99182225	99182225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002629	exon4	c.G719A	p.R240H	.	.	.
CRTAC1	55118	broad.mit.edu	36	10	99651359	99651359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018058	exon8	c.C1024T	p.P342S	.	.	.
PPRC1	23082	broad.mit.edu	36	10	103892854	103892854	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
INA	9118	broad.mit.edu	36	10	105038419	105038419	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IDI1	3422	broad.mit.edu	36	10	1080115	1080115	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SORCS1	114815	broad.mit.edu	36	10	108579314	108579314	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NRAP	4892	broad.mit.edu	36	10	115339547	115339547	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PNLIPRP2	5408	broad.mit.edu	36	10	118379572	118379572	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KCNK18	338567	broad.mit.edu	36	10	118950650	118950650	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UPF2	26019	broad.mit.edu	36	10	12117054	12117054	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BUB3	9184	broad.mit.edu	36	10	124904416	124904416	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM175B	23172	broad.mit.edu	36	10	126485490	126485490	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TCERG1L	256536	broad.mit.edu	36	10	132996645	132996645	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GPR123	84435	broad.mit.edu	36	10	134748504	134748504	+	5'Flank	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DUX4L2	728410	broad.mit.edu	36	10	135341072	135341072	+	Intron	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRPF18	8559	broad.mit.edu	36	10	13712350	13712350	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FRMD4A	55691	broad.mit.edu	36	10	13789131	13789131	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADARB2	105	broad.mit.edu	36	10	1411359	1411359	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRDMT1	1787	broad.mit.edu	36	10	17244162	17244162	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PLXDC2	84898	broad.mit.edu	36	10	20375796	20375796	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ARMC3	219681	broad.mit.edu	36	10	23260921	23260921	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANKRD26	22852	broad.mit.edu	36	10	27375280	27375280	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C10orf68	79741	broad.mit.edu	36	10	33177658	33177658	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM21B	55747	broad.mit.edu	36	10	47465951	47465951	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RBP3	5949	broad.mit.edu	36	10	48006044	48006044	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TUBAL3	79861	broad.mit.edu	36	10	5432798	5432798	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55253188	55253188	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FBXO18	84893	broad.mit.edu	36	10	6006272	6006272	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68610080	68610080	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TET1	80312	broad.mit.edu	36	10	70121581	70121581	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DDX50	79009	broad.mit.edu	36	10	70364690	70364690	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7282381	7282381	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7302374	7302374	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TTC18	118491	broad.mit.edu	36	10	74721209	74721209	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TTC18	118491	broad.mit.edu	36	10	74726794	74726794	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USP54	159195	broad.mit.edu	36	10	74959437	74959437	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYST4	23522	broad.mit.edu	36	10	76273249	76273249	+	Intron	SNP	G	A	A	rs35861648	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYST4	23522	broad.mit.edu	36	10	76458241	76458241	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ITIH2	3698	broad.mit.edu	36	10	7802938	7802938	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KCNMA1	3778	broad.mit.edu	36	10	78378895	78378895	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANXA11	311	broad.mit.edu	36	10	81922603	81922603	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CDHR1	92211	broad.mit.edu	36	10	85960911	85960911	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM190B	54462	broad.mit.edu	36	10	86263177	86263177	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LDB3	11155	broad.mit.edu	36	10	88468588	88468588	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM35A	54537	broad.mit.edu	36	10	88920214	88920214	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM35A	54537	broad.mit.edu	36	10	88929804	88929804	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM22D	728130	broad.mit.edu	36	10	89108171	89108171	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MINPP1	9562	broad.mit.edu	36	10	89258064	89258064	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LIPN	643418	broad.mit.edu	36	10	90515996	90515996	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HECTD2	143279	broad.mit.edu	36	10	93247835	93247835	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYOF	26509	broad.mit.edu	36	10	95201787	95201787	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96688420	96688420	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HPS1	3257	broad.mit.edu	36	10	100169781	100169781	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
DYNC2H1	79659	broad.mit.edu	36	11	102697133	102697133	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001377	exon81	c.11891delT	p.I3964fs	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105294682	105294682	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077243	exon11	c.1304delA	p.E435fs	.	.	.
RSF1	51773	broad.mit.edu	36	11	77153303	77153303	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016578	exon2	c.267delA	p.K89fs	.	.	.
PGR	5241	broad.mit.edu	36	11	100427486	100427486	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000926	exon5	c.G2236T	p.D746Y	.	.	.
TRPC6	7225	broad.mit.edu	36	11	100858962	100858962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004621	exon5	c.G1438A	p.A480T	.	.	.
YAP1	10413	broad.mit.edu	36	11	101581986	101581986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006106	exon4	c.C841T	p.R281W	.	.	.
BIRC3	330	broad.mit.edu	36	11	101701282	101701282	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182962	exon3	c.A832C	p.S278R	.	.	.
MMP8	4317	broad.mit.edu	36	11	102094474	102094474	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002424	exon5	c.C665A	p.S222Y	.	.	.
MMP8	4317	broad.mit.edu	36	11	102098515	102098515	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002424	exon2	c.C202T	p.R68X	.	.	.
MMP10	4319	broad.mit.edu	36	11	102155533	102155533	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002425	exon2	c.C259T	p.R87C	.	.	.
MMP13	4322	broad.mit.edu	36	11	102328078	102328078	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002427	exon5	c.C672T	p.F224F	.	.	.
MMP13	4322	broad.mit.edu	36	11	102331390	102331390	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002427	exon2	c.A163C	p.I55L	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102510301	102510301	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon15	c.G2148T	p.Q716H	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102534733	102534733	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon27	c.A4245C	p.L1415F	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102546080	102546080	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon33	c.A5002C	p.T1668P	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102553702	102553702	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon38	c.G6082T	p.E2028X	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102562439	102562439	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001377	exon42	c.G6892T	p.G2298W	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102607272	102607272	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon60	c.G9427T	p.E3143X	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102610074	102610074	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon61	c.G9542T	p.R3181I	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102635890	102635890	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon70	c.G10669T	p.E3557X	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102663489	102663489	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001377	exon75	c.G11040A	p.A3680A	.	.	.
DDI1	414301	broad.mit.edu	36	11	103412926	103412926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001711	exon1	c.G166A	p.E56K	.	.	.
CARD17	440068	broad.mit.edu	36	11	104476669	104476669	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007232	exon2	c.G55A	p.E19K	.	.	.
GRIA4	2893	broad.mit.edu	36	11	104988228	104988228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077243	exon3	c.G104A	p.R35Q	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105274228	105274228	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077243	exon7	c.G750T	p.E250D	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105274318	105274318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077243	exon7	c.G840A	p.K280K	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105300561	105300561	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077243	exon12	c.T1703G	p.F568C	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105350345	105350345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077243	exon16	c.C2508A	p.F836L	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106063545	106063545	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon8	c.G2139A	p.S713S	.	.	.
GUCY1A2	2977	broad.mit.edu	36	11	106084600	106084600	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000855	exon7	c.G1839T	p.M613I	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106794181	106794181	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152434	exon9	c.G1476T	p.E492D	.	.	.
CWF19L2	143884	broad.mit.edu	36	11	106805094	106805094	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152434	exon8	c.G1074T	p.E358D	.	.	.
ELMOD1	55531	broad.mit.edu	36	11	107006455	107006455	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130037	exon3	c.C120A	p.I40I	.	.	.
CTR9	9646	broad.mit.edu	36	11	10730886	10730886	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014633	exon2	c.C137A	p.A46D	.	.	.
CUL5	8065	broad.mit.edu	36	11	107430690	107430690	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003478	exon6	c.G660A	p.S220S	.	.	.
ATM	472	broad.mit.edu	36	11	107620810	107620810	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon7	c.C748T	p.R250X	.	.	.
ATM	472	broad.mit.edu	36	11	107673310	107673310	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon33	c.G4996T	p.E1666X	.	.	.
ATM	472	broad.mit.edu	36	11	107695961	107695961	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon44	c.T6418G	p.F2140V	.	.	.
ATM	472	broad.mit.edu	36	11	107703663	107703663	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon48	c.C7057A	p.P2353T	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10777848	10777848	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001418	exon19	c.G2151T	p.E717D	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10784091	10784091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001418	exon4	c.G187A	p.A63T	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109512608	109512608	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033390	exon2	c.T32G	p.V11G	.	.	.
ARHGAP20	57569	broad.mit.edu	36	11	109958340	109958340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020809	exon15	c.G1635T	p.E545D	.	.	.
LAYN	143903	broad.mit.edu	36	11	110925592	110925592	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178834	exon3	c.C423A	p.V141V	.	.	.
PPP2R1B	5519	broad.mit.edu	36	11	111123917	111123917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181700	exon9	c.C1178T	p.S393F	.	.	.
FDXACB1	91893	broad.mit.edu	36	11	111251444	111251444	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138378	exon5	c.G1287T	p.E429D	.	.	.
C11orf57	55216	broad.mit.edu	36	11	111451555	111451555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082969	exon2	c.G47A	p.R16Q	.	.	.
SDHD	6392	broad.mit.edu	36	11	111470774	111470774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003002	exon4	c.G350T	p.G117V	.	.	.
PTS	5805	broad.mit.edu	36	11	111609368	111609368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000317	exon6	c.G318A	p.T106T	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112611065	112611065	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000615	exon13	c.C1765T	p.R589C	.	.	.
NCAM1	4684	broad.mit.edu	36	11	112631831	112631831	+	5'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000615	exon14	c.C1822T	p.R608X	.	.	.
TTC12	54970	broad.mit.edu	36	11	112728132	112728132	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017868	exon16	c.G1439T	p.S480I	.	.	.
USP28	57646	broad.mit.edu	36	11	113206849	113206849	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020886	exon9	c.C860T	p.P287L	.	.	.
HTR3B	9177	broad.mit.edu	36	11	113307780	113307780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006028	exon4	c.G349A	p.D117N	.	.	.
HTR3A	3359	broad.mit.edu	36	11	113359053	113359053	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161772	exon5	c.G331A	p.V111M	.	.	.
NNMT	4837	broad.mit.edu	36	11	113688310	113688310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006169	exon3	c.C696T	p.I232I	.	.	.
C11orf71	54494	broad.mit.edu	36	11	113776013	113776013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019021	exon1	c.G251A	p.S84N	.	.	.
FAM55A	120400	broad.mit.edu	36	11	113898948	113898948	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152315	exon5	c.A545C	p.K182T	.	.	.
FAM55A	120400	broad.mit.edu	36	11	113906478	113906478	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152315	exon3	c.A36C	p.G12G	.	.	.
CADM1	23705	broad.mit.edu	36	11	114605195	114605195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014333	exon5	c.C569T	p.S190L	.	.	.
BUD13	84811	broad.mit.edu	36	11	116138624	116138624	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032725	exon4	c.G891T	p.K297N	.	.	.
SIK3	23387	broad.mit.edu	36	11	116252224	116252224	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025164	exon8	c.C876A	p.L292L	.	.	.
RNF214	257160	broad.mit.edu	36	11	116655879	116655879	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077239	exon7	c.C1005T	p.G335G	.	.	.
CEP164	22897	broad.mit.edu	36	11	116747319	116747319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014956	exon9	c.G1079A	p.R360K	.	.	.
CEP164	22897	broad.mit.edu	36	11	116771554	116771554	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014956	exon24	c.G2995T	p.E999X	.	.	.
CEP164	22897	broad.mit.edu	36	11	116772004	116772004	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	G	G	G	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014956	exon25	c.G3114T	p.K1038N	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116834720	116834720	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon19	c.C3708T	p.G1236G	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116908336	116908336	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon4	c.C803T	p.T268I	.	.	.
SCN4B	6330	broad.mit.edu	36	11	117521136	117521136	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174934	exon2	c.T80C	p.V27A	.	.	.
UBE4A	9354	broad.mit.edu	36	11	117768780	117768780	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004788	exon19	c.G3055T	p.V1019F	.	.	.
MLL	4297	broad.mit.edu	36	11	117848685	117848685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon3	c.C1601T	p.S534L	.	.	.
MLL	4297	broad.mit.edu	36	11	117852753	117852753	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon4	c.G3180T	p.E1060D	.	.	.
MLL	4297	broad.mit.edu	36	11	117874428	117874428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon22	c.G5936A	p.R1979Q	.	.	.
MLL	4297	broad.mit.edu	36	11	117878870	117878870	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon27	c.C7053T	p.I2351I	.	.	.
MLL	4297	broad.mit.edu	36	11	117879815	117879815	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon27	c.A7998G	p.G2666G	.	.	.
MLL	4297	broad.mit.edu	36	11	117882168	117882168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon27	c.G10351A	p.E3451K	.	.	.
MLL	4297	broad.mit.edu	36	11	117882553	117882553	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197104	exon27	c.C10736T	p.S3579F	.	.	.
TREH	11181	broad.mit.edu	36	11	118037094	118037094	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007180	exon8	c.C842A	p.P281H	.	.	.
CXCR5	643	broad.mit.edu	36	11	118269548	118269548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001716	exon2	c.G85A	p.D29N	.	.	.
VPS11	55823	broad.mit.edu	36	11	118449734	118449734	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021729	exon7	c.G1100T	p.R367I	.	.	.
DPAGT1	1798	broad.mit.edu	36	11	118476710	118476710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001382	exon3	c.C336T	p.G112G	.	.	.
CBL	867	broad.mit.edu	36	11	118654501	118654501	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005188	exon9	c.G1299A	p.P433P	.	.	.
CBL	867	broad.mit.edu	36	11	118661221	118661221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005188	exon11	c.G1676A	p.R559Q	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119822962	119822962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon17	c.G1490A	p.R497Q	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119825039	119825039	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon20	c.G1692T	p.K564N	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119833153	119833153	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon22	c.G2116T	p.E706X	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119852621	119852621	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198665	exon33	c.G3262A	p.A1088T	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120336925	120336925	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon15	c.G1972T	p.D658Y	.	.	.
TECTA	7007	broad.mit.edu	36	11	120501547	120501547	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon7	c.C1530T	p.C510C	.	.	.
TECTA	7007	broad.mit.edu	36	11	120565004	120565004	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon21	c.C6168T	p.C2056C	.	.	.
BLID	414899	broad.mit.edu	36	11	121491578	121491578	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001786	exon1	c.G263T	p.R88I	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1225530	1225530	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002458	exon31	c.T10844C	p.L3615P	.	.	.
OR6T1	219874	broad.mit.edu	36	11	123319336	123319336	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005187	exon1	c.C420A	p.V140V	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123353029	123353029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004474	exon1	c.G580A	p.D194N	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123392034	123392034	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004462	exon1	c.G543A	p.P181P	 OR10G4,central_nervous_system,brain,Substitution - coding silent,0 	.	.
VWA5A	4013	broad.mit.edu	36	11	123510886	123510886	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014622	exon11	c.G1294T	p.G432C	.	.	.
OR8G2	26492	broad.mit.edu	36	11	123600919	123600919	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007249	exon1	c.C312A	p.I104I	.	.	.
OR8B4	283162	broad.mit.edu	36	11	123799721	123799721	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005196	exon1	c.T257C	p.V86A	.	.	.
OR8B8	26493	broad.mit.edu	36	11	123816108	123816108	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012378	exon1	c.C84T	p.F28F	.	.	.
VSIG2	23584	broad.mit.edu	36	11	124123568	124123568	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014312	exon6	c.C779T	p.A260V	.	.	.
C11orf61	79684	broad.mit.edu	36	11	124143093	124143093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024631	exon4	c.C713T	p.S238L	.	.	.
ROBO3	64221	broad.mit.edu	36	11	124250354	124250354	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022370	exon14	c.G2211A	p.G737G	.	.	.
ROBO3	64221	broad.mit.edu	36	11	124251080	124251080	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022370	exon16	c.G2442T	p.E814D	.	.	.
HEPACAM	220296	broad.mit.edu	36	11	124299107	124299107	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152722	exon3	c.C437T	p.S146L	.	.	.
CCDC15	80071	broad.mit.edu	36	11	124380304	124380304	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025004	exon13	c.G2397T	p.K799N	.	.	.
ACRV1	56	broad.mit.edu	36	11	125047726	125047726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020115	exon3	c.G218A	p.R73Q	.	.	.
PUS3	83480	broad.mit.edu	36	11	125269110	125269110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031307	exon4	c.G1226A	p.R409H	.	.	.
HYLS1	219844	broad.mit.edu	36	11	125274768	125274768	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145014	exon4	c.C295A	p.L99M	.	.	.
HYLS1	219844	broad.mit.edu	36	11	125275062	125275062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145014	exon4	c.C589T	p.L197F	.	.	.
DDX25	29118	broad.mit.edu	36	11	125297974	125297974	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013264	exon12	c.G1440T	p.K480N	.	.	.
CDON	50937	broad.mit.edu	36	11	125390544	125390544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon7	c.G1000A	p.D334N	.	.	.
FOXRED1	55572	broad.mit.edu	36	11	125646584	125646584	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017547	exon2	c.C128T	p.S43L	.	.	.
ETS1	2113	broad.mit.edu	36	11	127837574	127837574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005238	exon8	c.G1218A	p.A406A	.	.	.
KCNJ1	3758	broad.mit.edu	36	11	128214435	128214435	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153767	exon4	c.G914A	p.R305H	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128441894	128441894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142685	exon6	c.G569A	p.R190Q	.	.	.
BARX2	8538	broad.mit.edu	36	11	128751242	128751242	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003658	exon1	c.G102T	p.E34D	.	.	.
TEAD1	7003	broad.mit.edu	36	11	12880158	12880158	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021961	exon10	c.A795C	p.K265N	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129317707	129317707	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020228	exon7	c.G790T	p.E264X	.	.	.
APLP2	334	broad.mit.edu	36	11	129485668	129485668	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142276	exon3	c.A305G	p.N102S	.	.	.
APLP2	334	broad.mit.edu	36	11	129505195	129505195	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142276	exon11	c.A1508C	p.D503A	.	.	.
SNX19	399979	broad.mit.edu	36	11	130278385	130278385	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014758	exon8	c.C2548A	p.L850I	.	.	.
SNX19	399979	broad.mit.edu	36	11	130290819	130290819	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014758	exon1	c.C226T	p.R76X	.	.	.
OPCML	4978	broad.mit.edu	36	11	131795344	131795344	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002545	exon7	c.C991A	p.L331I	.	.	.
SPATA19	219938	broad.mit.edu	36	11	133217593	133217593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174927	exon5	c.G434A	p.R145Q	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133296477	133296477	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon18	c.G2353A	p.E785K	.	.	.
ARNTL	406	broad.mit.edu	36	11	13347811	13347811	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030273	exon12	c.C612A	p.F204L	.	.	.
ARNTL	406	broad.mit.edu	36	11	13347883	13347883	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030273	exon12	c.G684T	p.K228N	.	.	.
JAM3	83700	broad.mit.edu	36	11	133519483	133519483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032801	exon4	c.G529A	p.E177K	.	.	.
GLB1L2	89944	broad.mit.edu	36	11	133748887	133748887	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138342	exon16	c.G1570A	p.D524N	.	.	.
COPB1	1315	broad.mit.edu	36	11	14471891	14471891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016451	exon4	c.C364T	p.R122C	.	.	.
PSMA1	5682	broad.mit.edu	36	11	14492571	14492571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148976	exon6	c.C315T	p.F105F	.	.	.
CYP2R1	120227	broad.mit.edu	36	11	14858546	14858546	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024514	exon3	c.C712A	p.L238M	.	.	.
SOX6	55553	broad.mit.edu	36	11	15964393	15964393	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033326	exon15	c.C2056T	p.R686W	.	.	.
KRTAP5-6	440023	broad.mit.edu	36	11	1675176	1675176	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012416	exon1	c.T125C	p.V42A	.	.	.
NUCB2	4925	broad.mit.edu	36	11	17288972	17288972	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005013	exon7	c.G508T	p.D170Y	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17382742	17382742	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon28	c.C3450A	p.V1150V	.	.	.
USH1C	10083	broad.mit.edu	36	11	17494379	17494379	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153676	exon15	c.C1245T	p.F415F	.	.	.
TPH1	7166	broad.mit.edu	36	11	18018876	18018876	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004179	exon1	c.G10T	p.D4Y	.	.	.
SAAL1	113174	broad.mit.edu	36	11	18061687	18061687	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138421	exon10	c.C1210A	p.L404I	.	.	.
SAAL1	113174	broad.mit.edu	36	11	18067597	18067597	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138421	exon7	c.A626C	p.K209T	.	.	.
SAA4	6291	broad.mit.edu	36	11	18209712	18209712	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006512	exon4	c.G306A	p.S102S	.	.	.
SAA1	6288	broad.mit.edu	36	11	18247867	18247867	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000331	exon4	c.C258A	p.F86L	.	.	.
HPS5	11234	broad.mit.edu	36	11	18260299	18260299	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181507	exon22	c.C3103A	p.L1035I	.	.	.
SPTY2D1	144108	broad.mit.edu	36	11	18588016	18588016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194285	exon6	c.C2026T	p.R676C	.	.	.
IGSF22	283284	broad.mit.edu	36	11	18693783	18693783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173588	exon11	c.C1303T	p.R435C	.	.	.
E2F8	79733	broad.mit.edu	36	11	19212874	19212874	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024680	exon5	c.T759G	p.F253L	.	.	.
NAV2	89797	broad.mit.edu	36	11	20061210	20061210	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001111018	exon26	c.A5215G	p.T1739A	.	.	.
HTATIP2	10553	broad.mit.edu	36	11	20361254	20361254	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098522	exon5	c.A656G	p.D219G	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20595889	20595889	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004211	exon7	c.G1143T	p.K381N	.	.	.
NELL1	4745	broad.mit.edu	36	11	20905444	20905444	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006157	exon8	c.G774T	p.E258D	.	.	.
ANO5	203859	broad.mit.edu	36	11	22181960	22181960	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142649	exon2	c.C75A	p.F25L	.	.	.
ANO5	203859	broad.mit.edu	36	11	22228872	22228872	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142649	exon11	c.C1020A	p.I340I	.	.	.
ANO5	203859	broad.mit.edu	36	11	22235804	22235804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142649	exon14	c.G1332T	p.E444D	.	.	.
ANO5	203859	broad.mit.edu	36	11	22251076	22251076	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142649	exon19	c.C2197A	p.L733I	.	.	.
ANO5	203859	broad.mit.edu	36	11	22257736	22257736	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142649	exon22	c.G2588T	p.R863I	.	.	.
GAS2	2620	broad.mit.edu	36	11	22734060	22734060	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005256	exon6	c.G708T	p.K236N	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24707330	24707330	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009909	exon2	c.C102A	p.V34V	.	.	.
ANO3	63982	broad.mit.edu	36	11	26620030	26620030	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031418	exon22	c.A2153G	p.N718S	.	.	.
SLC5A12	159963	broad.mit.edu	36	11	26699826	26699826	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178498	exon1	c.G12A	p.K4K	.	.	.
BBOX1	8424	broad.mit.edu	36	11	27071482	27071482	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003986	exon5	c.T526G	p.F176V	.	.	.
NLRP6	171389	broad.mit.edu	36	11	271136	271136	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138329	exon4	c.C1402A	p.L468M	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28062812	28062812	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031217	exon7	c.C1017T	p.Y339Y	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28076022	28076022	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031217	exon2	c.C49T	p.R17C	.	.	.
CARS	833	broad.mit.edu	36	11	2979846	2979846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014437	exon22	c.C2291T	p.A764V	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990667	29990667	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002233	exon2	c.A135T	p.A45A	.	.	.
MPPED2	744	broad.mit.edu	36	11	30389682	30389682	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001584	exon6	c.C794A	p.T265K	.	.	.
Unknown	0	broad.mit.edu	36	11	30899010	30899010	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020869	exon6	c.C776A	p.A259D	.	.	.
RCN1	5954	broad.mit.edu	36	11	32075285	32075285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002901	exon2	c.G274A	p.D92N	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32613874	32613874	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008391	exon14	c.G1129T	p.E377X	.	.	.
DEPDC7	91614	broad.mit.edu	36	11	33009603	33009603	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139160	exon5	c.G859T	p.D287Y	.	.	.
CSTF3	1479	broad.mit.edu	36	11	33080330	33080330	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001326	exon10	c.T795C	p.R265R	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33326016	33326016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005734	exon11	c.G2187A	p.P729P	.	.	.
PDHX	8050	broad.mit.edu	36	11	34938566	34938566	+	Missense_Mutation	SNP	G	A	A	rs61752925	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003477	exon5	c.G566A	p.R189H	.	.	.
PDHX	8050	broad.mit.edu	36	11	34973068	34973068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166158	exon6	c.G598A	p.E200K	.	.	.
ART1	417	broad.mit.edu	36	11	3637433	3637433	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004314	exon3	c.G108T	p.E36D	.	.	.
TRAF6	7189	broad.mit.edu	36	11	36468530	36468530	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145803	exon8	c.C1003T	p.R335X	.	.	.
TRAF6	7189	broad.mit.edu	36	11	36476664	36476664	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145803	exon4	c.A399G	p.K133K	.	.	.
RAG1	5896	broad.mit.edu	36	11	36554207	36554207	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000448	exon2	c.A2777C	p.K926T	.	.	.
NUP98	4928	broad.mit.edu	36	11	3701118	3701118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139131	exon16	c.G1991A	p.S664N	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093546	40093546	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020929	exon2	c.T873C	p.H291H	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40093901	40093901	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020929	exon2	c.C518A	p.S173Y	.	.	.
LRRC4C	57689	broad.mit.edu	36	11	40094266	40094266	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020929	exon2	c.C153A	p.C51X	.	.	.
TRIM21	6737	broad.mit.edu	36	11	4368041	4368041	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003141	exon2	c.C175A	p.L59M	.	.	.
ACCSL	390110	broad.mit.edu	36	11	44036567	44036567	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031854	exon12	c.C1452T	p.V484V	.	.	.
ACCSL	390110	broad.mit.edu	36	11	44036804	44036804	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031854	exon13	c.G1603T	p.E535X	.	.	.
ACCS	84680	broad.mit.edu	36	11	44055437	44055437	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032592	exon7	c.G589A	p.A197T	.	.	.
SYT13	57586	broad.mit.edu	36	11	45224636	45224636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020826	exon5	c.C850T	p.P284S	.	.	.
OR52M1	119772	broad.mit.edu	36	11	4523755	4523755	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004137	exon1	c.C759A	p.I253I	.	.	.
GYLTL1B	120071	broad.mit.edu	36	11	45905658	45905658	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152312	exon11	c.G1542A	p.T514T	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45931663	45931663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016621	exon10	c.G1086A	p.E362E	.	.	.
CREB3L1	90993	broad.mit.edu	36	11	46278133	46278133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052854	exon2	c.C174A	p.F58L	.	.	.
HARBI1	283254	broad.mit.edu	36	11	46594262	46594262	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173811	exon2	c.C102A	p.Y34X	.	.	.
ZNF408	79797	broad.mit.edu	36	11	46679688	46679688	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024741	exon2	c.C216T	p.R72R	.	.	.
CKAP5	9793	broad.mit.edu	36	11	46756325	46756325	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008938	exon22	c.G2688A	p.P896P	.	.	.
LRP4	4038	broad.mit.edu	36	11	46851231	46851231	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002334	exon30	c.C4579T	p.R1527C	.	.	.
LRP4	4038	broad.mit.edu	36	11	46855425	46855425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002334	exon23	c.C3178T	p.R1060C	.	.	.
MADD	8567	broad.mit.edu	36	11	47254056	47254056	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130476	exon4	c.G690A	p.S230S	.	.	.
MADD	8567	broad.mit.edu	36	11	47254935	47254935	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130476	exon5	c.A1040C	p.E347A	.	.	.
MADD	8567	broad.mit.edu	36	11	47262505	47262505	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130476	exon12	c.T1970C	p.V657A	.	.	.
MADD	8567	broad.mit.edu	36	11	47274046	47274046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130476	exon22	c.C3506T	p.T1169I	.	.	.
RAPSN	5913	broad.mit.edu	36	11	47426121	47426121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032645	exon2	c.C350T	p.A117V	.	.	.
MTCH2	23788	broad.mit.edu	36	11	47607131	47607131	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014342	exon9	c.C583A	p.L195M	.	.	.
MTCH2	23788	broad.mit.edu	36	11	47608685	47608685	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014342	exon8	c.C537T	p.F179F	.	.	.
AGBL2	79841	broad.mit.edu	36	11	47688511	47688511	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024783	exon3	c.C226T	p.L76F	.	.	.
FNBP4	23360	broad.mit.edu	36	11	47702801	47702801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015308	exon13	c.C2114T	p.P705L	.	.	.
FNBP4	23360	broad.mit.edu	36	11	47712216	47712216	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015308	exon10	c.C1623T	p.F541F	.	.	.
OR52R1	119695	broad.mit.edu	36	11	4781443	4781443	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005177	exon1	c.C744A	p.I248I	.	.	.
OR4B1	119765	broad.mit.edu	36	11	48195141	48195141	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005470	exon1	c.G204A	p.E68E	.	.	.
OR4X2	119764	broad.mit.edu	36	11	48223662	48223662	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004727	exon1	c.G431A	p.G144D	.	.	.
OR4C3	256144	broad.mit.edu	36	11	48303333	48303333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004702	exon1	c.G265A	p.A89T	.	.	.
OR4A47	403253	broad.mit.edu	36	11	48467356	48467356	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005512	exon1	c.T436C	p.S146P	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885371	4885371	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004749	exon1	c.T196A	p.L66M	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885901	4885901	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004749	exon1	c.C726A	p.S242S	.	.	.
OR51G1	79324	broad.mit.edu	36	11	4901840	4901840	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005237	exon1	c.G306T	p.Q102H	.	.	.
FOLH1	2346	broad.mit.edu	36	11	49178410	49178410	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193472	exon4	c.C339A	p.I113I	.	.	.
OR51A2	401667	broad.mit.edu	36	11	4932694	4932694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004748	exon1	c.C826A	p.L276I	.	.	.
OR51L1	119682	broad.mit.edu	36	11	4976977	4976977	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004755	exon1	c.C189A	p.Y63X	.	.	.
OR4C13	283092	broad.mit.edu	36	11	49930556	49930556	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001955	exon1	c.G6A	p.A2A	.	.	.
OR4C13	283092	broad.mit.edu	36	11	49930728	49930728	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001955	exon1	c.T178G	p.F60V	.	.	.
OR4C12	283093	broad.mit.edu	36	11	49960352	49960352	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005270	exon1	c.A262T	p.K88X	.	.	.
OR4C12	283093	broad.mit.edu	36	11	49960508	49960508	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005270	exon1	c.A106G	p.T36A	.	.	.
OR52A5	390054	broad.mit.edu	36	11	5109931	5109931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005160	exon1	c.G518A	p.R173Q	.	.	.
OR4A5	81318	broad.mit.edu	36	11	51268086	51268086	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005272	exon1	c.G886T	p.E296X	.	.	.
OR4A5	81318	broad.mit.edu	36	11	51268854	51268854	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005272	exon1	c.A118G	p.N40D	.	.	.
OR52A1	23538	broad.mit.edu	36	11	5130037	5130037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012375	exon1	c.C139A	p.L47I	.	.	.
OR4C46	119749	broad.mit.edu	36	11	51371873	51371873	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004703	exon1	c.A16C	p.N6H	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178051	5178051	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.A456C	p.K152N	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178195	5178195	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.T312G	p.D104E	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178490	5178490	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.G17T	p.R6I	.	.	.
HBB	3043	broad.mit.edu	36	11	5204572	5204572	+	Missense_Mutation	SNP	G	T	T	rs35755331	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000518	exon2	c.C126A	p.F42L	.	.	.
OR51B6	390058	broad.mit.edu	36	11	5330174	5330174	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004750	exon1	c.A861C	p.P287P	.	.	.
OR51Q1	390061	broad.mit.edu	36	11	5400265	5400265	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004757	exon1	c.C259A	p.L87I	.	.	.
OR51I1	390063	broad.mit.edu	36	11	5418421	5418421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005288	exon1	c.G900T	p.E300D	.	.	.
OR51I1	390063	broad.mit.edu	36	11	5418668	5418668	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005288	exon1	c.T653C	p.L218P	.	.	.
OR52D1	390066	broad.mit.edu	36	11	5467123	5467123	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005163	exon1	c.C611A	p.T204N	.	.	.
UBQLN3	50613	broad.mit.edu	36	11	5486017	5486017	+	Missense_Mutation	SNP	C	A	A	rs2234453	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017481	exon2	c.G1348T	p.D450Y	.	.	.
OR4A16	81327	broad.mit.edu	36	11	54868095	54868095	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005274	exon1	c.T843C	p.N281N	.	.	.
OR4A15	81328	broad.mit.edu	36	11	54892259	54892259	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005275	exon1	c.A324C	p.K108N	.	.	.
OR4C16	219428	broad.mit.edu	36	11	55096829	55096829	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004701	exon1	c.T650C	p.V217A	.	.	.
OR4S2	219431	broad.mit.edu	36	11	55175225	55175225	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004059	exon1	c.C270A	p.I90I	.	.	.
OR52H1	390067	broad.mit.edu	36	11	5522854	5522854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005289	exon1	c.G476A	p.R159Q	.	.	.
OR5D16	390144	broad.mit.edu	36	11	55363523	55363523	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005496	exon1	c.C720A	p.F240L	.	.	.
OR5W2	390148	broad.mit.edu	36	11	55438116	55438116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001960	exon1	c.G519T	p.E173D	.	.	.
OR5I1	10798	broad.mit.edu	36	11	55459541	55459541	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006637	exon1	c.G912A	p.E304E	.	.	.
OR10AG1	282770	broad.mit.edu	36	11	55491783	55491783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005491	exon1	c.G733A	p.A245T	.	.	.
OR5AS1	219447	broad.mit.edu	36	11	55554562	55554562	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001921	exon1	c.T92C	p.F31S	.	.	.
OR8H3	390152	broad.mit.edu	36	11	55646630	55646630	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005201	exon1	c.T206G	p.F69C	.	.	.
OR5J2	282775	broad.mit.edu	36	11	55701557	55701557	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005492	exon1	c.C888T	p.D296D	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5583338	5583338	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198645	exon2	c.C190T	p.R64C	.	.	.
OR8K3	219473	broad.mit.edu	36	11	55842693	55842693	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005202	exon1	c.T335G	p.L112R	.	.	.
OR8K1	390157	broad.mit.edu	36	11	55870472	55870472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002907	exon1	c.C382T	p.R128C	.	.	.
OR8J1	219477	broad.mit.edu	36	11	55884846	55884846	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005205	exon1	c.C548T	p.P183L	.	.	.
TRIM6	117854	broad.mit.edu	36	11	5588821	5588821	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198645	exon6	c.C615A	p.F205L	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5610122	5610122	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003819	exon8	c.C1047T	p.S349S	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5610458	5610458	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003827	exon2	c.C321A	p.F107L	.	.	.
OR9G4	283189	broad.mit.edu	36	11	56267365	56267365	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005284	exon1	c.G499T	p.G167X	.	.	.
OR5AK2	390181	broad.mit.edu	36	11	56513377	56513377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005323	exon1	c.G413A	p.R138Q	.	.	.
OR5AK2	390181	broad.mit.edu	36	11	56513689	56513689	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005323	exon1	c.C725A	p.A242D	.	.	.
TRIM5	85363	broad.mit.edu	36	11	5656211	5656211	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033092	exon4	c.C543A	p.V181V	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56834203	56834203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033396	exon6	c.G2558A	p.G853D	.	.	.
TNKS1BP1	85456	broad.mit.edu	36	11	56844550	56844550	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033396	exon3	c.C307T	p.P103S	.	.	.
SSRP1	6749	broad.mit.edu	36	11	56855819	56855819	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003146	exon9	c.C1122A	p.I374I	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5686970	5686970	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199573	exon8	c.A1001C	p.D334A	.	.	.
TRIM22	10346	broad.mit.edu	36	11	5687196	5687196	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199573	exon8	c.G1227T	p.Q409H	.	.	.
PRG3	10394	broad.mit.edu	36	11	56903547	56903547	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006093	exon3	c.C371T	p.A124V	.	.	.
PRG2	5553	broad.mit.edu	36	11	56913296	56913296	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002728	exon3	c.G129T	p.E43D	.	.	.
PRG2	5553	broad.mit.edu	36	11	56948061	56948061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017611	exon5	c.G331A	p.A111T	.	.	.
SLC43A3	29015	broad.mit.edu	36	11	56950086	56950086	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017611	exon3	c.C136T	p.L46L	.	.	.
OR56B1	387748	broad.mit.edu	36	11	5714801	5714801	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005180	exon1	c.G479T	p.R160I	.	.	.
TMX2	51075	broad.mit.edu	36	11	57262756	57262756	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144012	exon4	c.C372A	p.F124L	.	.	.
OR52N4	390072	broad.mit.edu	36	11	5732661	5732661	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005175	exon1	c.G115A	p.V39M	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57332579	57332579	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085469	exon10	c.G1912T	p.E638X	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57333350	57333350	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085469	exon11	c.G1950T	p.K650N	.	.	.
OR52N4	390072	broad.mit.edu	36	11	5733389	5733389	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005175	exon1	c.T843C	p.N281N	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57339513	57339513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001085469	exon15	c.G2452A	p.D818N	.	.	.
OR6Q1	219952	broad.mit.edu	36	11	57555281	57555281	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005186	exon1	c.A281C	p.K94T	.	.	.
OR52N5	390075	broad.mit.edu	36	11	5755739	5755739	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001922	exon1	c.G702A	p.A234A	.	.	.
OR52N5	390075	broad.mit.edu	36	11	5756023	5756023	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001922	exon1	c.C418T	p.R140C	.	.	.
OR52N1	79473	broad.mit.edu	36	11	5765983	5765983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001913	exon1	c.C640A	p.L214M	.	.	.
OR9Q2	219957	broad.mit.edu	36	11	57714870	57714870	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005283	exon1	c.A332G	p.D111G	.	.	.
OR1S2	219958	broad.mit.edu	36	11	57727262	57727262	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004459	exon1	c.C968A	p.S323Y	.	.	.
OR5B17	219965	broad.mit.edu	36	11	57882631	57882631	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005489	exon1	c.G488A	p.R163H	.	.	.
OR5B3	441608	broad.mit.edu	36	11	57927334	57927334	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005469	exon1	c.G125A	p.G42E	.	.	.
OR5B2	390190	broad.mit.edu	36	11	57947123	57947123	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005566	exon1	c.A188G	p.N63S	.	.	.
CNTF	1270	broad.mit.edu	36	11	58148505	58148505	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000614	exon2	c.T537G	p.I179M	.	.	.
OR52E6	390078	broad.mit.edu	36	11	5819348	5819348	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005167	exon1	c.C356T	p.A119V	.	.	.
OR52E6	390078	broad.mit.edu	36	11	5819701	5819701	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005167	exon1	c.G3T	p.M1I	.	.	.
GLYATL1	92292	broad.mit.edu	36	11	58478914	58478914	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080661	exon5	c.C375A	p.I125I	.	.	.
GLYATL1	92292	broad.mit.edu	36	11	58480058	58480058	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080661	exon7	c.G984T	p.Q328H	.	.	.
MPEG1	219972	broad.mit.edu	36	11	58736011	58736011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039396	exon1	c.G904A	p.A302T	.	.	.
MPEG1	219972	broad.mit.edu	36	11	58736469	58736469	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039396	exon1	c.G446A	p.R149Q	.	.	.
MS4A7	58475	broad.mit.edu	36	11	59916810	59916810	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206939	exon6	c.A623C	p.K208T	.	.	.
MS4A14	84689	broad.mit.edu	36	11	59940027	59940027	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032597	exon5	c.C1010A	p.S337Y	.	.	.
MS4A14	84689	broad.mit.edu	36	11	59940456	59940456	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032597	exon5	c.G1439T	p.R480I	.	.	.
MS4A5	64232	broad.mit.edu	36	11	59953761	59953761	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023945	exon1	c.T38G	p.V13G	.	.	.
MS4A5	64232	broad.mit.edu	36	11	59954958	59954958	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023945	exon2	c.C267A	p.F89L	.	.	.
MS4A5	64232	broad.mit.edu	36	11	59957827	59957827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023945	exon4	c.G353A	p.R118Q	.	.	.
MS4A1	931	broad.mit.edu	36	11	59991059	59991059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021950	exon6	c.G625A	p.A209T	.	.	.
MS4A12	54860	broad.mit.edu	36	11	60031133	60031133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164470	exon6	c.C626A	p.P209H	.	.	.
MS4A10	341116	broad.mit.edu	36	11	60315041	60315041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206893	exon3	c.G202A	p.A68T	.	.	.
MS4A10	341116	broad.mit.edu	36	11	60316331	60316331	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206893	exon4	c.C321A	p.I107I	.	.	.
ZP1	22917	broad.mit.edu	36	11	60395143	60395143	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207341	exon5	c.G964T	p.A322S	.	.	.
CYBASC3	220002	broad.mit.edu	36	11	60877076	60877076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161454	exon6	c.G556A	p.A186T	.	.	.
C11orf10	746	broad.mit.edu	36	11	61314543	61314543	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014206	exon2	c.C111T	p.F37F	.	.	.
FEN1	2237	broad.mit.edu	36	11	61319469	61319469	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004111	exon2	c.G60T	p.E20D	.	.	.
C11orf42	160298	broad.mit.edu	36	11	6188833	6188833	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173525	exon3	c.C987T	p.F329F	.	.	.
FAM160A2	84067	broad.mit.edu	36	11	6195620	6195620	+	Missense_Mutation	SNP	C	T	T	rs35946899	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098794	exon9	c.G1772A	p.R591Q	.	.	.
FAM160A2	84067	broad.mit.edu	36	11	6201623	6201623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098794	exon3	c.G570A	p.E190E	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62043570	62043570	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.C14895T	p.I4965I	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62046140	62046140	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G12325T	p.E4109X	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62047476	62047476	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G10989A	p.E3663E	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62047898	62047898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G10567A	p.E3523K	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62051762	62051762	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.C6703A	p.H2235N	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62053836	62053836	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.A4629T	p.G1543G	.	.	.
ROM1	6094	broad.mit.edu	36	11	62137825	62137825	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000327	exon1	c.T496C	p.Y166H	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6218053	6218053	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037329	exon4	c.C453T	p.F151F	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6218327	6218327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037329	exon4	c.G727A	p.E243K	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6222066	6222066	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037329	exon6	c.T1579C	p.Y527H	.	.	.
GNG3	2785	broad.mit.edu	36	11	62232836	62232836	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012202	exon3	c.C210A	p.F70L	.	.	.
HNRNPUL2	221092	broad.mit.edu	36	11	62246884	62246884	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079559	exon5	c.T959C	p.V320A	.	.	.
SLC22A10	387775	broad.mit.edu	36	11	62814460	62814460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039752	exon1	c.C247A	p.L83M	.	.	.
SMPD1	6609	broad.mit.edu	36	11	6372171	6372171	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007593	exon6	c.C1651T	p.P551S	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64265025	64265025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098670	exon5	c.G342A	p.R114R	.	.	.
TRIM3	10612	broad.mit.edu	36	11	6426970	6426970	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006458	exon13	c.G2099A	p.G700D	.	.	.
NAALADL1	10004	broad.mit.edu	36	11	64581447	64581447	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005468	exon4	c.G575A	p.R192Q	.	.	.
SNX32	254122	broad.mit.edu	36	11	65375198	65375198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152760	exon7	c.G700A	p.A234T	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6545247	6545247	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144666	exon36	c.C11932T	p.R3978X	.	.	.
TSGA10IP	254187	broad.mit.edu	36	11	65469848	65469848	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152762	exon1	c.G126A	p.S42S	.	.	.
TSGA10IP	254187	broad.mit.edu	36	11	65471694	65471694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152762	exon3	c.G822T	p.K274N	.	.	.
SF3B2	10992	broad.mit.edu	36	11	65583289	65583289	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006842	exon11	c.G1224T	p.E408D	.	.	.
KLC2	64837	broad.mit.edu	36	11	65787996	65787996	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134775	exon7	c.G939T	p.E313D	.	.	.
ILK	3611	broad.mit.edu	36	11	6587538	6587538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004517	exon10	c.C864T	p.V288V	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6601468	6601468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003737	exon21	c.G8015A	p.R2672Q	.	.	.
CCDC87	55231	broad.mit.edu	36	11	66116163	66116163	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018219	exon1	c.G900A	p.S300S	.	.	.
CCS	9973	broad.mit.edu	36	11	66129539	66129539	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005125	exon7	c.T571C	p.W191R	.	.	.
RBM4B	83759	broad.mit.edu	36	11	66193047	66193047	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031492	exon3	c.C704T	p.A235V	.	.	.
SPTBN2	6712	broad.mit.edu	36	11	66234778	66234778	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006946	exon9	c.G924T	p.E308D	.	.	.
CHKA	1119	broad.mit.edu	36	11	67594316	67594316	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212469	exon5	c.G731T	p.R244I	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67682928	67682928	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017635	exon11	c.T1461G	p.N487K	.	.	.
SUV420H1	51111	broad.mit.edu	36	11	67695126	67695126	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017635	exon9	c.T909G	p.I303M	.	.	.
MRGPRD	116512	broad.mit.edu	36	11	68504119	68504119	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198923	exon1	c.G913A	p.E305K	.	.	.
TPCN2	219931	broad.mit.edu	36	11	68587017	68587017	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139075	exon6	c.G636A	p.S212S	.	.	.
OR2D3	120775	broad.mit.edu	36	11	6899383	6899383	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004684	exon1	c.A575C	p.H192P	.	.	.
ANO1	55107	broad.mit.edu	36	11	69703804	69703804	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018043	exon23	c.C2397A	p.I799I	.	.	.
ZNF214	7761	broad.mit.edu	36	11	6980550	6980550	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013249	exon2	c.C93A	p.V31V	.	.	.
PPFIA1	8500	broad.mit.edu	36	11	69850021	69850021	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003626	exon6	c.G612T	p.M204I	.	.	.
NLRP14	338323	broad.mit.edu	36	11	7024634	7024634	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176822	exon5	c.G2118A	p.K706K	.	.	.
DHCR7	1717	broad.mit.edu	36	11	70826563	70826563	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163817	exon8	c.C906T	p.F302F	.	.	.
KRTAP5-11	440051	broad.mit.edu	36	11	70971067	70971067	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005405	exon1	c.G465T	p.K155N	.	.	.
LRTOMT	220074	broad.mit.edu	36	11	71483779	71483779	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145309	exon5	c.G23T	p.R8I	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72310588	72310588	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014824	exon9	c.G761A	p.R254Q	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72377669	72377669	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014824	exon6	c.A509G	p.D170G	.	.	.
SYT9	143425	broad.mit.edu	36	11	7280850	7280850	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175733	exon2	c.C150T	p.I50I	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73467055	73467055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon23	c.G4356T	p.K1452N	.	.	.
C2CD3	26005	broad.mit.edu	36	11	73528365	73528365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015531	exon4	c.G640A	p.D214N	.	.	.
P4HA3	283208	broad.mit.edu	36	11	73665679	73665679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182904	exon9	c.C1334T	p.T445M	.	.	.
SYT9	143425	broad.mit.edu	36	11	7395870	7395870	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175733	exon5	c.C1272A	p.V424V	.	.	.
RNF169	254225	broad.mit.edu	36	11	74224865	74224865	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098638	exon6	c.G1569T	p.E523D	.	.	.
OR2AT4	341152	broad.mit.edu	36	11	74477953	74477953	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005285	exon1	c.A454C	p.S152R	.	.	.
SLCO2B1	11309	broad.mit.edu	36	11	74593236	74593236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145212	exon11	c.C1661T	p.S554L	.	.	.
OLFML1	283298	broad.mit.edu	36	11	7487935	7487935	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198474	exon3	c.G1149A	p.W383X	.	.	.
TALDO1	6888	broad.mit.edu	36	11	754308	754308	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006755	exon7	c.A856C	p.K286Q	.	.	.
LRRC32	2615	broad.mit.edu	36	11	76048934	76048934	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128922	exon3	c.G1351T	p.V451L	.	.	.
CAPN5	726	broad.mit.edu	36	11	76503021	76503021	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004055	exon5	c.G592A	p.D198N	.	.	.
MYO7A	4647	broad.mit.edu	36	11	76602643	76602643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000260	exon48	c.G6529A	p.G2177R	.	.	.
GDPD4	220032	broad.mit.edu	36	11	76657715	76657715	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182833	exon8	c.C526A	p.L176I	.	.	.
PAK1	5058	broad.mit.edu	36	11	76781119	76781119	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002576	exon2	c.G95A	p.G32E	.	.	.
RSF1	51773	broad.mit.edu	36	11	77063843	77063843	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016578	exon14	c.C3448T	p.R1150X	.	.	.
ALG8	79053	broad.mit.edu	36	11	77489704	77489704	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024079	exon13	c.T1535G	p.V512G	.	.	.
OR5P3	120066	broad.mit.edu	36	11	7803895	7803895	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153445	exon1	c.C201A	p.A67A	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78059197	78059197	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon32	c.C5841T	p.F1947F	.	.	.
OR10A6	390093	broad.mit.edu	36	11	7906505	7906505	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004461	exon1	c.T281G	p.F94C	.	.	.
RIC3	79608	broad.mit.edu	36	11	8089140	8089140	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024557	exon6	c.G788T	p.R263I	.	.	.
PRCP	5547	broad.mit.edu	36	11	82227255	82227255	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005040	exon8	c.G1096T	p.E366X	.	.	.
PCF11	51585	broad.mit.edu	36	11	82552977	82552977	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon4	c.G588T	p.K196N	.	.	.
PCF11	51585	broad.mit.edu	36	11	82558369	82558369	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon8	c.G3344T	p.R1115I	.	.	.
PCF11	51585	broad.mit.edu	36	11	82565825	82565825	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon10	c.A3808C	p.N1270H	.	.	.
ANKRD42	338699	broad.mit.edu	36	11	82616521	82616521	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182603	exon7	c.T788G	p.I263S	.	.	.
CCDC90B	60492	broad.mit.edu	36	11	82667463	82667463	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021825	exon3	c.T278C	p.V93A	.	.	.
STK33	65975	broad.mit.edu	36	11	8435566	8435566	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030906	exon7	c.G595T	p.E199X	.	.	.
CREBZF	58487	broad.mit.edu	36	11	85053484	85053484	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039618	exon1	c.T84G	p.T28T	.	.	.
EED	8726	broad.mit.edu	36	11	85666654	85666654	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152991	exon11	c.T1172C	p.L391S	.	.	.
C11orf73	51501	broad.mit.edu	36	11	85733304	85733304	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016401	exon4	c.G432T	p.K144N	.	.	.
CCDC81	60494	broad.mit.edu	36	11	85789386	85789386	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001156474	exon7	c.G776T	p.R259I	.	.	.
PRSS23	11098	broad.mit.edu	36	11	86196511	86196511	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007173	exon2	c.G178T	p.E60X	.	.	.
ST5	6764	broad.mit.edu	36	11	8695915	8695915	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon8	c.G1578A	p.L526L	.	.	.
GRM5	2915	broad.mit.edu	36	11	87940698	87940698	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon8	c.T1801C	p.F601L	.	.	.
GRM5	2915	broad.mit.edu	36	11	88222907	88222907	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000842	exon3	c.C726T	p.I242I	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89071269	89071269	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153696	exon14	c.G1183A	p.E395K	.	.	.
NAALAD2	10003	broad.mit.edu	36	11	89508416	89508416	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005467	exon2	c.C124T	p.R42C	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726736	91726736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008781	exon1	c.G1810A	p.D604N	.	.	.
FAT3	120114	broad.mit.edu	36	11	91727771	91727771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.C2845T	p.L949F	.	.	.
FAT3	120114	broad.mit.edu	36	11	92171124	92171124	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon9	c.C5297T	p.A1766V	.	.	.
FAT3	120114	broad.mit.edu	36	11	92216779	92216779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon18	c.C10598T	p.S3533F	.	.	.
HEPHL1	341208	broad.mit.edu	36	11	93394227	93394227	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098672	exon1	c.C45A	p.F15L	.	.	.
GPR83	10888	broad.mit.edu	36	11	93773977	93773977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016540	exon1	c.G85A	p.A29T	.	.	.
ANKRD49	54851	broad.mit.edu	36	11	93870897	93870897	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017704	exon3	c.C271T	p.R91W	 ANKRD49,central_nervous_system,brain,Substitution - Missense,0 	.	.
PIWIL4	143689	broad.mit.edu	36	11	93950203	93950203	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152431	exon4	c.G410T	p.R137I	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94222932	94222932	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130847	exon7	c.G1654T	p.E552X	.	.	.
SESN3	143686	broad.mit.edu	36	11	94558273	94558273	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144665	exon5	c.C557A	p.S186Y	.	.	.
MAML2	84441	broad.mit.edu	36	11	95466229	95466229	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032427	exon2	c.G614T	p.R205I	.	.	.
CCDC82	79780	broad.mit.edu	36	11	95756821	95756821	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024725	exon4	c.T739G	p.S247A	.	.	.
JRKL	8690	broad.mit.edu	36	11	95763555	95763555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003772	exon1	c.G94A	p.A32T	.	.	.
SBF2	81846	broad.mit.edu	36	11	9823694	9823694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030962	exon24	c.C3104A	p.S1035Y	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99647107	99647107	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon17	c.T2016C	p.F672F	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99675228	99675228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon19	c.G2288A	p.R763Q	.	.	.
CNTN5	53942	broad.mit.edu	36	11	99716476	99716476	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175566	exon21	c.C2580T	p.F860F	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102504945	102504945	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102573871	102573871	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DYNC2H1	79659	broad.mit.edu	36	11	102855032	102855032	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GRIA4	2893	broad.mit.edu	36	11	105294862	105294862	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NPAT	4863	broad.mit.edu	36	11	107561268	107561268	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KDELC2	143888	broad.mit.edu	36	11	107855226	107855226	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BTG4	54766	broad.mit.edu	36	11	110889459	110889459	+	5'Flank	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DLAT	1737	broad.mit.edu	36	11	111409469	111409469	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	11	1170301	1170301	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FXYD6	53826	broad.mit.edu	36	11	117217117	117217117	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FXYD6	53826	broad.mit.edu	36	11	117217909	117217909	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCN4B	6330	broad.mit.edu	36	11	117519994	117519994	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ABCG4	64137	broad.mit.edu	36	11	118534143	118534143	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POU2F3	25833	broad.mit.edu	36	11	119645171	119645171	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARHGEF12	23365	broad.mit.edu	36	11	119805622	119805622	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MIR100	406892	broad.mit.edu	36	11	121528203	121528203	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	11	123799042	123799042	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CHEK1	1111	broad.mit.edu	36	11	125004570	125004570	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIRREL3	84623	broad.mit.edu	36	11	125800834	125800834	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NCAPD3	23310	broad.mit.edu	36	11	133533180	133533180	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NCAPD3	23310	broad.mit.edu	36	11	133559858	133559858	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PDE3B	5140	broad.mit.edu	36	11	14809753	14809753	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SERGEF	26297	broad.mit.edu	36	11	17766199	17766199	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20582400	20582400	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24710318	24710318	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	11	30872363	30872363	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DCDC1	341019	broad.mit.edu	36	11	31069615	31069615	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33306624	33306624	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33330398	33330398	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PAMR1	25891	broad.mit.edu	36	11	35419824	35419824	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NUP98	4928	broad.mit.edu	36	11	3759843	3759843	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CKAP5	9793	broad.mit.edu	36	11	46749113	46749113	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FOLH1	2346	broad.mit.edu	36	11	49147322	49147322	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FOLH1	2346	broad.mit.edu	36	11	49178581	49178581	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OR5T3	390154	broad.mit.edu	36	11	55776240	55776240	+	5'Flank	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TRIM6-TRIM34	445372	broad.mit.edu	36	11	5582444	5582444	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	11	55900609	55900609	+	IGR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRG2	5553	broad.mit.edu	36	11	56913994	56913994	+	5'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CTNND1	1500	broad.mit.edu	36	11	57339644	57339644	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
OR9Q1	219956	broad.mit.edu	36	11	57642537	57642537	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MS4A8B	83661	broad.mit.edu	36	11	60225135	60225135	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DAGLA	747	broad.mit.edu	36	11	61258893	61258893	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM160A2	84067	broad.mit.edu	36	11	6200420	6200420	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GANAB	23193	broad.mit.edu	36	11	62154419	62154419	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EHD1	10938	broad.mit.edu	36	11	64378917	64378917	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ARFIP2	23647	broad.mit.edu	36	11	6457884	6457884	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAU	2197	broad.mit.edu	36	11	64645702	64645702	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MALAT1	378938	broad.mit.edu	36	11	65023441	65023441	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MALAT1	378938	broad.mit.edu	36	11	65026832	65026832	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MALAT1	378938	broad.mit.edu	36	11	65027367	65027367	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MALAT1	378938	broad.mit.edu	36	11	65029862	65029862	+	RNA	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6549796	6549796	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PGM2L1	283209	broad.mit.edu	36	11	73727156	73727156	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GDPD4	220032	broad.mit.edu	36	11	76621716	76621716	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
INTS4	92105	broad.mit.edu	36	11	77367678	77367678	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TUB	7275	broad.mit.edu	36	11	8016996	8016996	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM126A	84233	broad.mit.edu	36	11	85042956	85042956	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TMEM135	65084	broad.mit.edu	36	11	86708079	86708079	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9008869	9008869	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAT3	120114	broad.mit.edu	36	11	92209372	92209372	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MAML2	84441	broad.mit.edu	36	11	95466336	95466336	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SYT1	6857	broad.mit.edu	36	12	78203815	78203815	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005639	exon5	c.284delA	p.E95fs	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100084476	100084476	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145913	exon12	c.A1453G	p.N485D	.	.	.
SLC5A8	160728	broad.mit.edu	36	12	100102129	100102129	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145913	exon8	c.C966A	p.L322L	.	.	.
UTP20	27340	broad.mit.edu	36	12	100204307	100204307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon5	c.C404T	p.S135L	.	.	.
UTP20	27340	broad.mit.edu	36	12	100223892	100223892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon16	c.G1850A	p.G617D	.	.	.
UTP20	27340	broad.mit.edu	36	12	100247281	100247281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon27	c.G3340A	p.A1114T	.	.	.
UTP20	27340	broad.mit.edu	36	12	100303509	100303509	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon61	c.C8074A	p.L2692I	.	.	.
ARL1	400	broad.mit.edu	36	12	100314329	100314329	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177	exon5	c.G494A	p.G165D	.	.	.
GNPTAB	79158	broad.mit.edu	36	12	100682878	100682878	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024312	exon13	c.G1948A	p.E650K	.	.	.
DRAM1	55332	broad.mit.edu	36	12	100826154	100826154	+	Silent	SNP	C	T	T	rs61748065	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018370	exon4	c.C402T	p.V134V	.	.	.
CLEC9A	283420	broad.mit.edu	36	12	10096595	10096595	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207345	exon4	c.C42A	p.S14R	.	.	.
NUP37	79023	broad.mit.edu	36	12	101003715	101003715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024057	exon5	c.C499T	p.P167S	.	.	.
CLEC9A	283420	broad.mit.edu	36	12	10106930	10106930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207345	exon7	c.G329A	p.S110N	.	.	.
CLEC9A	283420	broad.mit.edu	36	12	10109368	10109368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207345	exon9	c.T596C	p.L199S	.	.	.
CLEC9A	283420	broad.mit.edu	36	12	10109434	10109434	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207345	exon9	c.C662T	p.S221L	.	.	.
CLEC1A	51267	broad.mit.edu	36	12	10115291	10115291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016511	exon6	c.G751A	p.E251K	.	.	.
IGF1	3479	broad.mit.edu	36	12	101398242	101398242	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111285	exon1	c.T48G	p.F16L	.	.	.
PAH	5053	broad.mit.edu	36	12	101812773	101812773	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000277	exon3	c.A222C	p.K74N	.	.	.
STAB2	55576	broad.mit.edu	36	12	102617076	102617076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon34	c.C3655T	p.H1219Y	.	.	.
STAB2	55576	broad.mit.edu	36	12	102655680	102655680	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon53	c.G5689A	p.D1897N	.	.	.
STAB2	55576	broad.mit.edu	36	12	102666944	102666944	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon59	c.C6318A	p.V2106V	.	.	.
STAB2	55576	broad.mit.edu	36	12	102680272	102680272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon67	c.C7450T	p.R2484W	.	.	.
HSP90B1	7184	broad.mit.edu	36	12	102857475	102857475	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003299	exon8	c.G1034T	p.R345I	.	.	.
TDG	6996	broad.mit.edu	36	12	102901080	102901080	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003211	exon6	c.G651T	p.Q217H	.	.	.
HCFC2	29915	broad.mit.edu	36	12	103021106	103021106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013320	exon15	c.G2304T	p.K768N	.	.	.
EID3	493861	broad.mit.edu	36	12	103222808	103222808	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008394	exon1	c.A966C	p.E322D	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103944646	103944646	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034173	exon22	c.C2523T	p.I841I	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103979595	103979595	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034173	exon8	c.G987A	p.T329T	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104038467	104038467	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015275	exon8	c.G523A	p.A175T	.	.	.
KIAA1033	23325	broad.mit.edu	36	12	104078033	104078033	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015275	exon29	c.T3037G	p.F1013V	.	.	.
POLR3B	55703	broad.mit.edu	36	12	105297989	105297989	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018082	exon9	c.G665A	p.R222Q	.	.	.
RFX4	5992	broad.mit.edu	36	12	105602739	105602739	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032491	exon1	c.C18T	p.F6F	.	.	.
RFX4	5992	broad.mit.edu	36	12	105650095	105650095	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213594	exon14	c.C1409A	p.S470Y	.	.	.
MTERFD3	80298	broad.mit.edu	36	12	105895923	105895923	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025198	exon3	c.C700A	p.L234I	.	.	.
WSCD2	9671	broad.mit.edu	36	12	107145028	107145028	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014653	exon6	c.C936T	p.C312C	.	.	.
CMKLR1	1240	broad.mit.edu	36	12	107210118	107210118	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004072	exon3	c.G746A	p.R249H	.	.	.
FICD	11153	broad.mit.edu	36	12	107437232	107437232	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007076	exon3	c.C1227T	p.G409G	.	.	.
SART3	9733	broad.mit.edu	36	12	107444151	107444151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014706	exon16	c.G2225A	p.R742H	.	.	.
SSH1	54434	broad.mit.edu	36	12	107735002	107735002	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161330	exon5	c.C342T	p.S114S	.	.	.
DAO	1610	broad.mit.edu	36	12	107817336	107817336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001917	exon10	c.C868T	p.R290W	.	.	.
UNG	7374	broad.mit.edu	36	12	108020783	108020783	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080911	exon2	c.A296T	p.K99M	.	.	.
ACACB	32	broad.mit.edu	36	12	108061917	108061917	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon1	c.C324T	p.D108D	.	.	.
ACACB	32	broad.mit.edu	36	12	108090127	108090127	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon3	c.G830A	p.R277H	.	.	.
ACACB	32	broad.mit.edu	36	12	108107926	108107926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093	exon11	c.G1978A	p.E660K	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108318671	108318671	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101421	exon3	c.C342A	p.A114A	.	.	.
TCHP	84260	broad.mit.edu	36	12	108829731	108829731	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143852	exon6	c.G543T	p.E181D	.	.	.
GIT2	9815	broad.mit.edu	36	12	108869509	108869509	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135213	exon15	c.C1432A	p.L478I	.	.	.
ANKRD13A	88455	broad.mit.edu	36	12	108951753	108951753	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033121	exon11	c.G1164A	p.T388T	.	.	.
ANAPC7	51434	broad.mit.edu	36	12	109303986	109303986	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001137664	exon8	c.T1188C	p.F396F	.	.	.
C12orf24	29902	broad.mit.edu	36	12	109408563	109408563	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013300	exon4	c.A357C	p.K119N	.	.	.
RAD9B	144715	broad.mit.edu	36	12	109437322	109437322	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152442	exon6	c.G573T	p.K191N	.	.	.
TAS2R13	50838	broad.mit.edu	36	12	10952692	10952692	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023920	exon1	c.G473A	p.R158Q	.	.	.
MYL2	4633	broad.mit.edu	36	12	109835305	109835305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000432	exon6	c.C380T	p.A127V	.	.	.
CUX2	23316	broad.mit.edu	36	12	110270493	110270493	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015267	exon22	c.C4442A	p.A1481D	.	.	.
BRAP	8315	broad.mit.edu	36	12	110605460	110605460	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006768	exon2	c.G117A	p.T39T	.	.	.
NAA25	80018	broad.mit.edu	36	12	110964246	110964246	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024953	exon20	c.C2420A	p.S807Y	.	.	.
NAA25	80018	broad.mit.edu	36	12	110996917	110996917	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024953	exon9	c.G811A	p.D271N	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111085324	111085324	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon74	c.G12509A	p.R4170H	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111172473	111172473	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon24	c.G3292T	p.E1098X	.	.	.
RPL6	6128	broad.mit.edu	36	12	111329012	111329012	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024662	exon4	c.T402C	p.S134S	.	.	.
RPH3A	22895	broad.mit.edu	36	12	111787693	111787693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143854	exon6	c.C322T	p.L108L	.	.	.
OAS1	4938	broad.mit.edu	36	12	111830984	111830984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032409	exon2	c.C441T	p.F147F	.	.	.
OAS2	4939	broad.mit.edu	36	12	111917636	111917636	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002535	exon3	c.C601A	p.L201I	.	.	.
OAS2	4939	broad.mit.edu	36	12	111927368	111927368	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002535	exon7	c.G1426A	p.E476K	.	.	.
DTX1	1840	broad.mit.edu	36	12	111999727	111999727	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004416	exon2	c.C375A	p.I125I	.	.	.
RASAL1	8437	broad.mit.edu	36	12	112043825	112043825	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004658	exon6	c.G300A	p.G100G	.	.	.
TPCN1	53373	broad.mit.edu	36	12	112209199	112209199	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143819	exon20	c.C1767T	p.F589F	.	.	.
SLC24A6	80024	broad.mit.edu	36	12	112243494	112243494	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024959	exon3	c.T199G	p.F67V	.	.	.
PRB4	5545	broad.mit.edu	36	12	11352663	11352663	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002723	exon3	c.G521A	p.R174Q	.	.	.
PRB2	653247	broad.mit.edu	36	12	11437159	11437159	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006248	exon3	c.G1120T	p.G374C	.	.	.
MED13L	23389	broad.mit.edu	36	12	114905392	114905392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon21	c.C4868T	p.A1623V	.	.	.
MAP1LC3B2	643246	broad.mit.edu	36	12	115498240	115498240	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085481	exon2	c.G110A	p.R37Q	.	.	.
NOS1	4842	broad.mit.edu	36	12	116148879	116148879	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000620	exon24	c.C3696T	p.F1232F	.	.	.
NOS1	4842	broad.mit.edu	36	12	116233692	116233692	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000620	exon3	c.C814T	p.P272S	.	.	.
NOS1	4842	broad.mit.edu	36	12	116253108	116253108	+	Silent	SNP	G	A	A	rs41459647	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000620	exon2	c.C150T	p.G50G	.	.	.
TAOK3	51347	broad.mit.edu	36	12	117167107	117167107	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016281	exon4	c.C167A	p.S56Y	.	.	.
CCDC64	92558	broad.mit.edu	36	12	118983985	118983985	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207311	exon3	c.T734G	p.I245S	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119095850	119095850	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon14	c.C1356A	p.A452A	.	.	.
ETV6	2120	broad.mit.edu	36	12	11928741	11928741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001987	exon6	c.C1105T	p.R369W	.	.	.
CABP1	9478	broad.mit.edu	36	12	119582407	119582407	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033677	exon3	c.C711T	p.F237F	.	.	.
OASL	8638	broad.mit.edu	36	12	119953800	119953800	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003733	exon3	c.C485A	p.P162H	.	.	.
P2RX4	5025	broad.mit.edu	36	12	120150972	120150972	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002560	exon7	c.A667G	p.T223A	.	.	.
HPD	3242	broad.mit.edu	36	12	120779720	120779720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002150	exon4	c.C95T	p.A32V	.	.	.
WDR66	144406	broad.mit.edu	36	12	120854087	120854087	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178003	exon4	c.G800A	p.R267Q	.	.	.
WDR66	144406	broad.mit.edu	36	12	120871306	120871306	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178003	exon8	c.G1225T	p.E409X	.	.	.
LRRC43	254050	broad.mit.edu	36	12	121243269	121243269	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098519	exon7	c.G1114T	p.E372X	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121391924	121391924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198240	exon9	c.G1642A	p.A548T	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121592597	121592597	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014708	exon6	c.A493G	p.T165A	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121641147	121641147	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014708	exon41	c.G4040A	p.G1347D	.	.	.
KNTC1	9735	broad.mit.edu	36	12	121655555	121655555	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014708	exon50	c.G5354T	p.R1785I	.	.	.
GPR109A	338442	broad.mit.edu	36	12	121753645	121753645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177551	exon1	c.C139T	p.L47F	.	.	.
CCDC62	84660	broad.mit.edu	36	12	121851795	121851795	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201435	exon9	c.C1149T	p.I383I	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122361564	122361564	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018183	exon24	c.C3283A	p.L1095I	.	.	.
SBNO1	55206	broad.mit.edu	36	12	122370419	122370419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018183	exon19	c.G2777A	p.R926Q	.	.	.
TMED2	10959	broad.mit.edu	36	12	122635227	122635227	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006815	exon1	c.G91T	p.E31X	.	.	.
GTF2H3	2967	broad.mit.edu	36	12	122698566	122698566	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001516	exon4	c.G304A	p.E102K	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122822185	122822185	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon3	c.A200C	p.K67T	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122831706	122831706	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon6	c.G565T	p.E189X	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122864277	122864277	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon20	c.G3291T	p.K1097N	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122871128	122871128	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon23	c.A3695C	p.K1232T	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122877271	122877271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon24	c.G3910A	p.A1304T	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122886011	122886011	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon27	c.G4531A	p.D1511N	.	.	.
LRP6	4040	broad.mit.edu	36	12	12288677	12288677	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon2	c.G235T	p.E79X	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122889102	122889102	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon28	c.C4695T	p.F1565F	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122907618	122907618	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon36	c.T6147C	p.V2049V	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122915148	122915148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon39	c.C6608T	p.S2203F	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122918594	122918594	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon42	c.T7140G	p.V2380V	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122974265	122974265	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon65	c.C11155T	p.L3719L	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122981931	122981931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon73	c.G12521A	p.R4174Q	.	.	.
ZNF664	144348	broad.mit.edu	36	12	123062716	123062716	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152437	exon6	c.T72C	p.I24I	.	.	.
ZNF664	144348	broad.mit.edu	36	12	123063300	123063300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152437	exon6	c.G656A	p.R219K	.	.	.
AACS	65985	broad.mit.edu	36	12	124165033	124165033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023928	exon9	c.G973T	p.D325Y	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128135060	128135060	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon6	c.C1584T	p.I528I	.	.	.
APOLD1	81575	broad.mit.edu	36	12	12831622	12831622	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030817	exon2	c.C516A	p.F172L	.	.	.
FZD10	11211	broad.mit.edu	36	12	129213828	129213828	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007197	exon1	c.G388T	p.D130Y	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129405098	129405098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004764	exon10	c.C1108T	p.R370W	.	.	.
PIWIL1	9271	broad.mit.edu	36	12	129407996	129407996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004764	exon14	c.G1610A	p.R537K	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129458227	129458227	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015347	exon16	c.C2922T	p.V974V	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129463124	129463124	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015347	exon15	c.G2814T	p.E938D	.	.	.
GPRC5D	55507	broad.mit.edu	36	12	12993747	12993747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018654	exon1	c.G839A	p.C280Y	.	.	.
GPR133	283383	broad.mit.edu	36	12	130005144	130005144	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198827	exon2	c.C89A	p.S30X	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130815083	130815083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004592	exon12	c.C1850A	p.S617Y	.	.	.
EP400	57634	broad.mit.edu	36	12	131012341	131012341	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon2	c.G1224T	p.K408N	.	.	.
EP400	57634	broad.mit.edu	36	12	131063625	131063625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon17	c.G3557A	p.R1186H	.	.	.
EP400	57634	broad.mit.edu	36	12	131064389	131064389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015409	exon19	c.G3898A	p.E1300K	.	.	.
GSG1	83445	broad.mit.edu	36	12	13133433	13133433	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080555	exon3	c.T409C	p.S137P	.	.	.
POLE	5426	broad.mit.edu	36	12	131760286	131760286	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon13	c.C1307G	p.P436R	.	.	.
POLE	5426	broad.mit.edu	36	12	131766169	131766169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon6	c.G565A	p.A189T	.	.	.
ANKLE2	23141	broad.mit.edu	36	12	131834494	131834494	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015114	exon5	c.G1227T	p.K409N	.	.	.
Unknown	0	broad.mit.edu	36	12	132012266	132012266	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164715	exon5	c.C1785T	p.S595S	.	.	.
Unknown	0	broad.mit.edu	36	12	132013161	132013161	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164715	exon5	c.C890T	p.S297L	.	.	.
ZNF26	7574	broad.mit.edu	36	12	132097903	132097903	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019591	exon4	c.A1365C	p.E455D	.	.	.
ZNF84	7637	broad.mit.edu	36	12	132145076	132145076	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127372	exon5	c.G1702T	p.E568X	.	.	.
ZNF84	7637	broad.mit.edu	36	12	132145482	132145482	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127372	exon5	c.G2108T	p.R703I	.	.	.
ZNF10	7556	broad.mit.edu	36	12	132242266	132242266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015394	exon5	c.C361A	p.L121I	.	.	.
ZNF268	10795	broad.mit.edu	36	12	132289316	132289316	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003415	exon6	c.G971T	p.R324I	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13614081	13614081	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon11	c.C2309A	p.S770Y	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13616072	13616072	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon10	c.A2104G	p.M702V	.	.	.
IQSEC3	440073	broad.mit.edu	36	12	137015	137015	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170738	exon7	c.C2337A	p.I779I	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13797808	13797808	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon3	c.C720A	p.I240I	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14469347	14469347	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018179	exon2	c.A1231G	p.N411D	.	.	.
ERP27	121506	broad.mit.edu	36	12	14958957	14958957	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152321	exon7	c.G801T	p.K267N	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15541508	15541508	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002848	exon3	c.C412A	p.L138M	.	.	.
PTPRO	5800	broad.mit.edu	36	12	15609801	15609801	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030669	exon6	c.A286C	p.N96H	.	.	.
SLC6A12	6539	broad.mit.edu	36	12	177416	177416	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122848	exon9	c.G861A	p.A287A	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18468225	18468225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004570	exon17	c.C2366T	p.A789V	.	.	.
PIK3C2G	5288	broad.mit.edu	36	12	18582458	18582458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004570	exon24	c.G3302A	p.R1101H	.	.	.
PLEKHA5	54477	broad.mit.edu	36	12	19366761	19366761	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019012	exon15	c.G2032T	p.E678X	.	.	.
PDE3A	5139	broad.mit.edu	36	12	20681424	20681424	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000921	exon9	c.C2125A	p.R709S	.	.	.
SLCO1C1	53919	broad.mit.edu	36	12	20745552	20745552	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017435	exon3	c.G163C	p.A55P	.	.	.
SLCO1C1	53919	broad.mit.edu	36	12	20796710	20796710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017435	exon15	c.G2120A	p.G707D	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20922077	20922077	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019844	exon9	c.G1075A	p.V359I	.	.	.
LST-3TM12	338821	broad.mit.edu	36	12	21063501	21063501	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009562	exon2	c.A138G	p.R46R	.	.	.
LST-3TM12	338821	broad.mit.edu	36	12	21087608	21087608	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009562	exon6	c.A660C	p.I220I	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21241362	21241362	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006446	exon8	c.G943T	p.G315X	.	.	.
SLCO1B1	10599	broad.mit.edu	36	12	21266559	21266559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006446	exon13	c.G1741A	p.A581T	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21336401	21336401	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134431	exon13	c.C1574A	p.S525Y	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21338199	21338199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134431	exon12	c.C1384T	p.L462L	.	.	.
SLCO1A2	6579	broad.mit.edu	36	12	21351109	21351109	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134431	exon6	c.T416G	p.I139S	.	.	.
GOLT1B	51026	broad.mit.edu	36	12	21552640	21552640	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016072	exon3	c.C174A	p.F58L	.	.	.
GYS2	2998	broad.mit.edu	36	12	21620199	21620199	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021957	exon3	c.C363G	p.G121G	.	.	.
KCNJ8	3764	broad.mit.edu	36	12	21810231	21810231	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004982	exon3	c.G968A	p.R323H	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21845379	21845379	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon38	c.C4516T	p.R1506X	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21856304	21856304	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon34	c.G4157A	p.R1386H	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21889883	21889883	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon24	c.C3017T	p.S1006L	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21932064	21932064	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon13	c.C1874T	p.S625L	.	.	.
ABCC9	10060	broad.mit.edu	36	12	21959935	21959935	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020297	exon5	c.A750G	p.K250K	.	.	.
CMAS	55907	broad.mit.edu	36	12	22105521	22105521	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018686	exon6	c.A828C	p.K276N	.	.	.
CMAS	55907	broad.mit.edu	36	12	22109506	22109506	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018686	exon8	c.A1299G	p.Q433Q	.	.	.
SLC6A13	6540	broad.mit.edu	36	12	222158	222158	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016615	exon4	c.A361G	p.I121V	.	.	.
ST8SIA1	6489	broad.mit.edu	36	12	22245813	22245813	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003034	exon5	c.C1011T	p.I337I	.	.	.
ST8SIA1	6489	broad.mit.edu	36	12	22331488	22331488	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003034	exon2	c.A243C	p.Q81H	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22494083	22494083	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014802	exon25	c.C2881A	p.L961I	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22515037	22515037	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014802	exon21	c.T2434G	p.S812A	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22515625	22515625	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014802	exon20	c.C2333A	p.S778Y	.	.	.
SOX5	6660	broad.mit.edu	36	12	23778916	23778916	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152989	exon9	c.A740G	p.H247R	.	.	.
SOX5	6660	broad.mit.edu	36	12	23940153	23940153	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152989	exon5	c.G72T	p.Q24H	.	.	.
BCAT1	586	broad.mit.edu	36	12	24893995	24893995	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178092	exon4	c.G483T	p.K161N	.	.	.
CASC1	55259	broad.mit.edu	36	12	25163439	25163439	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082972	exon12	c.G1477A	p.E493K	.	.	.
CASC1	55259	broad.mit.edu	36	12	25188640	25188640	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082972	exon9	c.G1102T	p.E368X	.	.	.
CASC1	55259	broad.mit.edu	36	12	25188873	25188873	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082972	exon9	c.G869T	p.R290I	.	.	.
CASC1	55259	broad.mit.edu	36	12	25202710	25202710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082972	exon4	c.G335A	p.R112Q	.	.	.
LYRM5	144363	broad.mit.edu	36	12	25248418	25248418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001660	exon3	c.G178A	p.E60K	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2572726	2572726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon19	c.C2617T	p.P873S	.	.	.
BHLHE41	79365	broad.mit.edu	36	12	26168974	26168974	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030762	exon1	c.C6T	p.D2D	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26384447	26384447	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon56	c.C7939T	p.R2647W	.	.	.
ITPR2	3709	broad.mit.edu	36	12	26538359	26538359	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002223	exon39	c.A5364C	p.Q1788H	.	.	.
C12orf11	55726	broad.mit.edu	36	12	26950518	26950518	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018164	exon16	c.C2065A	p.L689I	.	.	.
TM7SF3	51768	broad.mit.edu	36	12	27024104	27024104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016551	exon9	c.G1069A	p.V357I	.	.	.
KDM5A	5927	broad.mit.edu	36	12	272448	272448	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon27	c.A4604T	p.K1535M	.	.	.
STK38L	23012	broad.mit.edu	36	12	27352597	27352597	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015000	exon4	c.G245T	p.R82M	.	.	.
ARNTL2	56938	broad.mit.edu	36	12	27445777	27445777	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020183	exon12	c.G1321T	p.D441Y	.	.	.
REP15	387849	broad.mit.edu	36	12	27740812	27740812	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029874	exon1	c.T50C	p.V17A	.	.	.
OVCH1	341350	broad.mit.edu	36	12	29489583	29489583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183378	exon23	c.C2776T	p.L926F	.	.	.
IPO8	10526	broad.mit.edu	36	12	30678360	30678360	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190995	exon19	c.G2208A	p.A736A	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30767507	30767507	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001002259	exon11	c.G1996T	p.E666X	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30777833	30777833	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002259	exon5	c.A889G	p.T297A	.	.	.
FAM60A	58516	broad.mit.edu	36	12	31338021	31338021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135811	exon5	c.G340A	p.E114K	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31491965	31491965	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144973	exon6	c.C1635A	p.S545S	.	.	.
H3F3C	440093	broad.mit.edu	36	12	31836101	31836101	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013699	exon1	c.C267T	p.V89V	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32028484	32028484	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018169	exon4	c.A3328C	p.S1110R	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32031512	32031512	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018169	exon5	c.G5075A	p.S1692N	.	.	.
DNM1L	10059	broad.mit.edu	36	12	32784422	32784422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012062	exon17	c.C1865T	p.A622V	.	.	.
PKP2	5318	broad.mit.edu	36	12	32885392	32885392	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004572	exon7	c.T1525G	p.L509V	.	.	.
SYT10	341359	broad.mit.edu	36	12	33470528	33470528	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198992	exon2	c.T321A	p.V107V	.	.	.
ALG10B	144245	broad.mit.edu	36	12	37000560	37000560	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013620	exon3	c.C700A	p.L234I	.	.	.
CPNE8	144402	broad.mit.edu	36	12	37334000	37334000	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153634	exon20	c.C1646T	p.A549V	.	.	.
ABCD2	225	broad.mit.edu	36	12	38298815	38298815	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005164	exon1	c.C870T	p.G290G	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38985901	38985901	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon28	c.C3825A	p.V1275V	.	.	.
LRRK2	120892	broad.mit.edu	36	12	38994146	38994146	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon32	c.A4642C	p.I1548L	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39036194	39036194	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon46	c.A6781C	p.N2261H	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39598725	39598725	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001843	exon4	c.G112T	p.G38X	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39694366	39694366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001843	exon18	c.C2183T	p.A728V	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39696850	39696850	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001843	exon19	c.C2284T	p.P762S	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40118026	40118026	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013377	exon1	c.T13G	p.L5V	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40252536	40252536	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164595	exon10	c.G1688A	p.R563Q	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40252757	40252757	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164595	exon10	c.A1909G	p.I637V	.	.	.
GXYLT1	283464	broad.mit.edu	36	12	40799108	40799108	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099650	exon2	c.T354C	p.I118I	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41140309	41140309	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144882	exon8	c.C2065A	p.L689I	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41144593	41144593	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144882	exon7	c.C1510A	p.H504N	.	.	.
PRICKLE1	144165	broad.mit.edu	36	12	41149554	41149554	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144882	exon4	c.C349A	p.L117M	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42120010	42120010	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon17	c.G2420T	p.R807I	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42144762	42144762	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon10	c.G1408T	p.E470X	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42170493	42170493	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon7	c.T1089C	p.C363C	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42426144	42426144	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098614	exon4	c.G1235T	p.R412I	.	.	.
PUS7L	83448	broad.mit.edu	36	12	42428620	42428620	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098614	exon3	c.A970G	p.K324E	.	.	.
TWF1	5756	broad.mit.edu	36	12	42477451	42477451	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002822	exon7	c.G783T	p.K261N	.	.	.
TMEM117	84216	broad.mit.edu	36	12	42979707	42979707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032256	exon6	c.G686A	p.R229Q	.	.	.
NELL2	4753	broad.mit.edu	36	12	43457157	43457157	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145108	exon7	c.G697T	p.D233Y	.	.	.
NELL2	4753	broad.mit.edu	36	12	43459942	43459942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145108	exon4	c.G466A	p.A156T	.	.	.
ANO6	196527	broad.mit.edu	36	12	44047831	44047831	+	Silent	SNP	C	T	T	rs61745715	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142678	exon9	c.C1038T	p.C346C	.	.	.
ARID2	196528	broad.mit.edu	36	12	44516958	44516958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152641	exon8	c.C940T	p.R314C	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44603182	44603182	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon13	c.T3929C	p.V1310A	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44606500	44606500	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon11	c.G3251T	p.R1084I	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44606672	44606672	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon11	c.A3079C	p.K1027Q	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44606894	44606894	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon11	c.T2857C	p.S953P	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44607095	44607095	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon11	c.G2656T	p.E886X	.	.	.
C12orf4	57102	broad.mit.edu	36	12	4498273	4498273	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020374	exon7	c.G763T	p.E255X	.	.	.
C12orf4	57102	broad.mit.edu	36	12	4504701	4504701	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020374	exon6	c.C708A	p.N236K	.	.	.
RAD51AP1	10635	broad.mit.edu	36	12	4535786	4535786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006479	exon8	c.C728T	p.S243L	.	.	.
SLC38A4	55089	broad.mit.edu	36	12	45464683	45464683	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001143824	exon6	c.G402A	p.G134G	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4606858	4606858	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006422	exon4	c.G1471T	p.D491Y	.	.	.
AKAP3	10566	broad.mit.edu	36	12	4607584	4607584	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006422	exon4	c.C745T	p.R249C	.	.	.
NDUFA9	4704	broad.mit.edu	36	12	4666410	4666410	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005002	exon11	c.G1009T	p.D337Y	.	.	.
OR8S1	341568	broad.mit.edu	36	12	47205977	47205977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005203	exon1	c.C296T	p.A99V	.	.	.
GALNT8	26290	broad.mit.edu	36	12	4725643	4725643	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017417	exon6	c.A1131T	p.G377G	.	.	.
C12orf41	54934	broad.mit.edu	36	12	47340523	47340523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017822	exon8	c.G1120A	p.E374K	.	.	.
C12orf41	54934	broad.mit.edu	36	12	47359156	47359156	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017822	exon4	c.G475A	p.D159N	.	.	.
CCNT1	904	broad.mit.edu	36	12	47374093	47374093	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001240	exon9	c.G1171T	p.E391X	.	.	.
CACNB3	784	broad.mit.edu	36	12	47506417	47506417	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000725	exon10	c.C743T	p.A248V	.	.	.
WNT10B	7480	broad.mit.edu	36	12	47646357	47646357	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003394	exon5	c.C958T	p.R320X	.	.	.
MLL2	8085	broad.mit.edu	36	12	47728812	47728812	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon13	c.A4028G	p.D1343G	.	.	.
KCNA6	3742	broad.mit.edu	36	12	4789895	4789895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002235	exon1	c.G427A	p.E143K	.	.	.
DNAJC22	79962	broad.mit.edu	36	12	48029397	48029397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024902	exon2	c.G475A	p.A159T	.	.	.
MCRS1	10445	broad.mit.edu	36	12	48238989	48238989	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012300	exon13	c.C1245A	p.F415L	.	.	.
FAM186B	84070	broad.mit.edu	36	12	48279997	48279997	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032130	exon4	c.C1693T	p.R565X	.	.	.
PRPF40B	25766	broad.mit.edu	36	12	48323355	48323355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031698	exon22	c.G2225A	p.G742D	.	.	.
FMNL3	91010	broad.mit.edu	36	12	48338498	48338498	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175736	exon6	c.T599G	p.V200G	.	.	.
RACGAP1	29127	broad.mit.edu	36	12	48685422	48685422	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013277	exon6	c.T309C	p.I103I	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891025	4891025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000217	exon2	c.G220A	p.D74N	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891313	4891313	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000217	exon2	c.G508A	p.A170T	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891689	4891689	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000217	exon2	c.G884A	p.R295H	.	.	.
LARP4	113251	broad.mit.edu	36	12	49155739	49155739	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052879	exon16	c.A2000C	p.K667T	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49354578	49354578	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173602	exon6	c.C695A	p.S232Y	.	.	.
DIP2B	57609	broad.mit.edu	36	12	49371125	49371125	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173602	exon13	c.A1578G	p.V526V	.	.	.
TMPRSS12	283471	broad.mit.edu	36	12	49567465	49567465	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182559	exon5	c.T949G	p.F317V	.	.	.
METTL7A	25840	broad.mit.edu	36	12	49610008	49610008	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014033	exon2	c.G543A	p.S181S	.	.	.
METTL7A	25840	broad.mit.edu	36	12	49610116	49610116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014033	exon2	c.C651A	p.F217L	.	.	.
LETMD1	25875	broad.mit.edu	36	12	49736215	49736215	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024668	exon6	c.G514T	p.A172S	.	.	.
TFCP2	7024	broad.mit.edu	36	12	49797780	49797780	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173452	exon3	c.C292T	p.R98X	.	.	.
TFCP2	7024	broad.mit.edu	36	12	49852439	49852439	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173452	exon1	c.G34A	p.E12K	.	.	.
BIN2	51411	broad.mit.edu	36	12	49983168	49983168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016293	exon3	c.G187A	p.D63N	.	.	.
GALNT6	11226	broad.mit.edu	36	12	50044327	50044327	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007210	exon6	c.C894T	p.I298I	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50661209	50661209	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020328	exon4	c.G770A	p.R257H	.	.	.
KRT75	9119	broad.mit.edu	36	12	51108701	51108701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004693	exon6	c.C1129T	p.L377L	.	.	.
KRT75	9119	broad.mit.edu	36	12	51112094	51112094	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004693	exon3	c.G737A	p.R246H	.	.	.
KRT5	3852	broad.mit.edu	36	12	51197678	51197678	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000424	exon5	c.G1055A	p.R352H	.	.	.
KRT73	319101	broad.mit.edu	36	12	51298354	51298354	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175068	exon1	c.C222T	p.G74G	.	.	.
KRT1	3848	broad.mit.edu	36	12	51357189	51357189	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006121	exon6	c.G1175T	p.R392I	.	.	.
KRT77	374454	broad.mit.edu	36	12	51377855	51377855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175078	exon2	c.G636A	p.E212E	.	.	.
KRT77	374454	broad.mit.edu	36	12	51383019	51383019	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175078	exon1	c.A467T	p.E156V	.	.	.
KRT18	3875	broad.mit.edu	36	12	51630914	51630914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199187	exon4	c.C614T	p.A205V	.	.	.
MFSD5	84975	broad.mit.edu	36	12	51933404	51933404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032889	exon2	c.G518A	p.R173Q	.	.	.
AMHR2	269	broad.mit.edu	36	12	52104836	52104836	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020547	exon3	c.C309T	p.G103G	.	.	.
MAP3K12	7786	broad.mit.edu	36	12	52166545	52166545	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193511	exon3	c.G574T	p.E192X	.	.	.
ATF7	11016	broad.mit.edu	36	12	52197230	52197230	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006856	exon12	c.G1410A	p.S470S	.	.	.
HOXC13	3229	broad.mit.edu	36	12	52625224	52625224	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017410	exon2	c.G910T	p.V304L	.	.	.
HOXC8	3224	broad.mit.edu	36	12	52689683	52689683	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022658	exon1	c.C348A	p.S116S	.	.	.
HOXC6	3223	broad.mit.edu	36	12	52708889	52708889	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153693	exon2	c.C71A	p.S24Y	.	.	.
HOXC4	3221	broad.mit.edu	36	12	52734303	52734303	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014620	exon3	c.G330T	p.P110P	.	.	.
HNRNPA1	3178	broad.mit.edu	36	12	52963929	52963929	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031157	exon9	c.T974G	p.F325C	.	.	.
NFE2	4778	broad.mit.edu	36	12	52973120	52973120	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006163	exon3	c.G427T	p.E143X	.	.	.
GPR84	53831	broad.mit.edu	36	12	53043584	53043584	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020370	exon2	c.T319C	p.S107P	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53078715	53078715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002205	exon28	c.C2876T	p.A959V	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53084513	53084513	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002205	exon14	c.G1431A	p.G477G	.	.	.
ITGA5	3678	broad.mit.edu	36	12	53085933	53085933	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002205	exon10	c.C951A	p.F317L	.	.	.
KIAA0748	9840	broad.mit.edu	36	12	53642623	53642623	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon9	c.C1326A	p.L442L	.	.	.
OR6C6	283365	broad.mit.edu	36	12	53974369	53974369	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005493	exon1	c.G915T	p.K305N	.	.	.
OR6C1	390321	broad.mit.edu	36	12	54000725	54000725	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005182	exon1	c.C75A	p.I25I	.	.	.
OR6C1	390321	broad.mit.edu	36	12	54001001	54001001	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005182	exon1	c.C351A	p.S117S	.	.	.
OR6C70	390327	broad.mit.edu	36	12	54149487	54149487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005499	exon1	c.G703A	p.A235T	.	.	.
BLOC1S1	2647	broad.mit.edu	36	12	54399577	54399577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001487	exon4	c.C379T	p.R127W	.	.	.
CD63	967	broad.mit.edu	36	12	54406282	54406282	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001780	exon6	c.G457T	p.D153Y	.	.	.
GDF11	10220	broad.mit.edu	36	12	54428963	54428963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005811	exon2	c.G772A	p.E258K	.	.	.
DNAJC14	85406	broad.mit.edu	36	12	54508030	54508030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032364	exon2	c.G680A	p.R227Q	.	.	.
ERBB3	2065	broad.mit.edu	36	12	54768704	54768704	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001982	exon8	c.A985G	p.K329E	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54933806	54933806	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173595	exon9	c.C952T	p.R318C	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54934288	54934288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173595	exon8	c.G736A	p.A246T	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54934705	54934705	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173595	exon7	c.G617A	p.G206D	.	.	.
CS	1431	broad.mit.edu	36	12	54956217	54956217	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004077	exon7	c.C618T	p.I206I	.	.	.
TIMELESS	8914	broad.mit.edu	36	12	55103027	55103027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003920	exon19	c.C2309T	p.A770V	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55279872	55279872	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013449	exon26	c.A5059G	p.N1687D	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55280121	55280121	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013449	exon25	c.G4925A	p.R1642H	.	.	.
BAZ2A	11176	broad.mit.edu	36	12	55295305	55295305	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013449	exon3	c.G496T	p.E166X	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55716858	55716858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005379	exon21	c.G2239A	p.V747M	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55717032	55717032	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005379	exon20	c.G2166T	p.K722N	.	.	.
MYO1A	4640	broad.mit.edu	36	12	55719274	55719274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005379	exon15	c.C1321T	p.L441F	.	.	.
STAT6	6778	broad.mit.edu	36	12	55786842	55786842	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178078	exon5	c.G379T	p.E127X	.	.	.
LRP1	4035	broad.mit.edu	36	12	55825131	55825131	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon5	c.C558A	p.R186R	.	.	.
LRP1	4035	broad.mit.edu	36	12	55853897	55853897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon22	c.G3414T	p.E1138D	.	.	.
LRP1	4035	broad.mit.edu	36	12	55855653	55855653	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon23	c.C3691A	p.L1231I	.	.	.
LRP1	4035	broad.mit.edu	36	12	55865799	55865799	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002332	exon41	c.G6682A	p.E2228K	.	.	.
INHBC	3626	broad.mit.edu	36	12	56115235	56115235	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005538	exon1	c.G299A	p.S100N	.	.	.
GLI1	2735	broad.mit.edu	36	12	56143838	56143838	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005269	exon2	c.G97T	p.E33X	.	.	.
MARS	4141	broad.mit.edu	36	12	56169126	56169126	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004990	exon2	c.G167A	p.G56D	.	.	.
MBD6	114785	broad.mit.edu	36	12	56207629	56207629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052897	exon8	c.G2155A	p.A719T	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56230437	56230437	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004984	exon1	c.G116T	p.S39I	.	.	.
KIF5A	3798	broad.mit.edu	36	12	56249100	56249100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004984	exon9	c.G802A	p.A268T	.	.	.
PIP4K2C	79837	broad.mit.edu	36	12	56279212	56279212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146258	exon5	c.G611A	p.R204H	.	.	.
XRCC6BP1	91419	broad.mit.edu	36	12	56631868	56631868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033276	exon4	c.G376A	p.E126K	.	.	.
XRCC6BP1	91419	broad.mit.edu	36	12	56633680	56633680	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033276	exon5	c.G478T	p.D160Y	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57554321	57554321	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153377	exon18	c.G2898T	p.K966N	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57567843	57567843	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153377	exon8	c.G1086T	p.K362N	.	.	.
LRIG3	121227	broad.mit.edu	36	12	57568494	57568494	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153377	exon7	c.G831T	p.E277D	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58455516	58455516	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004731	exon4	c.T1173C	p.P391P	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58459494	58459494	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004731	exon5	c.G1204T	p.E402X	.	.	.
VWF	7450	broad.mit.edu	36	12	5955644	5955644	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000552	exon43	c.G7331T	p.W2444L	.	.	.
VWF	7450	broad.mit.edu	36	12	5971400	5971400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000552	exon38	c.G6644A	p.G2215D	.	.	.
FAM19A2	338811	broad.mit.edu	36	12	60547453	60547453	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178539	exon2	c.G21T	p.Q7H	.	.	.
USP15	9958	broad.mit.edu	36	12	61001599	61001599	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006313	exon5	c.T563G	p.F188C	.	.	.
USP15	9958	broad.mit.edu	36	12	61076407	61076407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006313	exon19	c.C2549T	p.A850V	.	.	.
MON2	23041	broad.mit.edu	36	12	61173972	61173972	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015026	exon3	c.G186T	p.E62D	.	.	.
MON2	23041	broad.mit.edu	36	12	61215702	61215702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015026	exon14	c.C1846A	p.H616N	.	.	.
MON2	23041	broad.mit.edu	36	12	61225010	61225010	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015026	exon21	c.A2532C	p.K844N	.	.	.
AVPR1A	552	broad.mit.edu	36	12	61827489	61827489	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000706	exon2	c.C1174T	p.R392X	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62771378	62771378	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020762	exon12	c.C1492T	p.Q498X	.	.	.
TBK1	29110	broad.mit.edu	36	12	63140315	63140315	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013254	exon3	c.T167G	p.F56C	.	.	.
TBK1	29110	broad.mit.edu	36	12	63177242	63177242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013254	exon18	c.C1895T	p.S632L	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63850563	63850563	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014319	exon1	c.A920C	p.E307A	.	.	.
LEMD3	23592	broad.mit.edu	36	12	63918559	63918559	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014319	exon5	c.C1706A	p.P569H	.	.	.
NCAPD2	9918	broad.mit.edu	36	12	6502277	6502277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014865	exon16	c.C1977A	p.F659L	.	.	.
NOP2	4839	broad.mit.edu	36	12	6541139	6541139	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006170	exon11	c.C1147T	p.R383W	.	.	.
CHD4	1108	broad.mit.edu	36	12	6579736	6579736	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon9	c.C1150A	p.L384M	.	.	.
CAND1	55832	broad.mit.edu	36	12	65985187	65985187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018448	exon10	c.C1472T	p.S491L	.	.	.
IFNG	3458	broad.mit.edu	36	12	66838104	66838104	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000619	exon3	c.C222A	p.S74S	.	.	.
IL26	55801	broad.mit.edu	36	12	66905211	66905211	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018402	exon3	c.G348T	p.Q116H	.	.	.
SLC35E3	55508	broad.mit.edu	36	12	67426529	67426529	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018656	exon1	c.T105G	p.I35M	.	.	.
MDM2	4193	broad.mit.edu	36	12	67508924	67508924	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002392	exon8	c.G630T	p.E210D	.	.	.
MDM2	4193	broad.mit.edu	36	12	67519772	67519772	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002392	exon11	c.T1370C	p.V457A	.	.	.
CD4	920	broad.mit.edu	36	12	6779849	6779849	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000616	exon3	c.C165T	p.N55N	.	.	.
CPSF6	11052	broad.mit.edu	36	12	67940133	67940133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007007	exon8	c.C1358A	p.S453Y	.	.	.
CD4	920	broad.mit.edu	36	12	6797903	6797903	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195016	exon6	c.C393T	p.G131G	.	.	.
GNB3	2784	broad.mit.edu	36	12	6822851	6822851	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002075	exon7	c.T331G	p.F111V	.	.	.
USP5	8078	broad.mit.edu	36	12	6842639	6842639	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003481	exon15	c.C1791T	p.L597L	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69276331	69276331	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002837	exon3	c.G369A	p.T123T	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70291890	70291890	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144982	exon32	c.A5672C	p.K1891T	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70312192	70312192	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144982	exon15	c.A3187G	p.T1063A	.	.	.
TMEM19	55266	broad.mit.edu	36	12	70377543	70377543	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018279	exon4	c.C599A	p.S200Y	.	.	.
TPH2	121278	broad.mit.edu	36	12	70711622	70711622	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173353	exon11	c.A1353C	p.T451T	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71243031	71243031	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013381	exon9	c.G1851T	p.Q617H	.	.	.
TRHDE	29953	broad.mit.edu	36	12	71332389	71332389	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013381	exon16	c.A2561G	p.D854G	.	.	.
PEX5	5830	broad.mit.edu	36	12	7253633	7253633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001131024	exon14	c.G1537A	p.E513K	.	.	.
ACSM4	341392	broad.mit.edu	36	12	7364611	7364611	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080454	exon6	c.G945A	p.T315T	.	.	.
ACSM4	341392	broad.mit.edu	36	12	7367127	7367127	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080454	exon8	c.G1156T	p.E386X	.	.	.
KCNC2	3747	broad.mit.edu	36	12	73887544	73887544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139137	exon2	c.G487A	p.E163K	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7412032	7412032	+	Silent	SNP	G	T	T	rs1129724	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174941	exon17	c.C4101A	p.I1367I	.	.	.
CD163L1	283316	broad.mit.edu	36	12	7419219	7419219	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174941	exon11	c.C2926T	p.L976L	.	.	.
BBS10	79738	broad.mit.edu	36	12	75264329	75264329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024685	exon2	c.C1567T	p.L523L	.	.	.
CSRP2	1466	broad.mit.edu	36	12	75781139	75781139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001321	exon3	c.G229A	p.A77T	.	.	.
CSRP2	1466	broad.mit.edu	36	12	75784077	75784077	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001321	exon2	c.G95A	p.R32H	.	.	.
E2F7	144455	broad.mit.edu	36	12	75945857	75945857	+	Missense_Mutation	SNP	T	G	G	rs34429867	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203394	exon11	c.A2077C	p.K693Q	.	.	.
NAV3	89795	broad.mit.edu	36	12	76925004	76925004	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon8	c.A1555C	p.S519R	.	.	.
APOBEC1	339	broad.mit.edu	36	12	7696307	7696307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001644	exon3	c.G436A	p.A146T	.	.	.
NAV3	89795	broad.mit.edu	36	12	77107961	77107961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon33	c.G6056A	p.R2019K	.	.	.
NAV3	89795	broad.mit.edu	36	12	77117304	77117304	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon36	c.C6511T	p.R2171X	.	.	.
NAV3	89795	broad.mit.edu	36	12	77117386	77117386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon36	c.C6593T	p.T2198M	.	.	.
CLEC4C	170482	broad.mit.edu	36	12	7785384	7785384	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203503	exon3	c.T42G	p.N14K	.	.	.
SLC2A14	144195	broad.mit.edu	36	12	7865118	7865118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153449	exon9	c.C1004T	p.A335V	.	.	.
Unknown	0	broad.mit.edu	36	12	79140120	79140120	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173591	exon6	c.G426T	p.K142N	.	.	.
Unknown	0	broad.mit.edu	36	12	79156874	79156874	+	IGR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173591	exon9	c.A903C	p.G301G	.	.	.
Unknown	0	broad.mit.edu	36	12	79238338	79238338	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173591	exon33	c.G3781T	p.A1261S	.	.	.
Unknown	0	broad.mit.edu	36	12	79285597	79285597	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173591	exon53	c.G6430A	p.G2144S	.	.	.
MYF5	4617	broad.mit.edu	36	12	79635030	79635030	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005593	exon1	c.C57T	p.S19S	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80212770	80212770	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003625	exon24	c.C2900A	p.P967H	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80302082	80302082	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003625	exon9	c.A835C	p.K279Q	.	.	.
FOXJ2	55810	broad.mit.edu	36	12	8083770	8083770	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018416	exon2	c.G75T	p.E25D	.	.	.
FAM90A1	55138	broad.mit.edu	36	12	8266432	8266432	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018088	exon7	c.G648A	p.R216R	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83791146	83791146	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182767	exon7	c.T960G	p.F320L	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83809769	83809769	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018057	exon2	c.C262A	p.P88T	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	83974343	83974343	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon8	c.G1641T	p.E547D	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	83975064	83975064	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon8	c.C2362T	p.R788X	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84016794	84016794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon13	c.C3100A	p.L1034I	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84021926	84021926	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032165	exon14	c.G3223A	p.V1075I	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84042114	84042114	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon17	c.G3693A	p.Q1231Q	.	.	.
MGAT4C	25834	broad.mit.edu	36	12	84897952	84897953	+	Nonsense_Mutation	DNP	CG	TA	TA	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013244	exon7	c.682_683TA	.	.	.	NA
AICDA	57379	broad.mit.edu	36	12	8648675	8648675	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020661	exon4	c.C538A	p.L180I	.	.	.
MFAP5	8076	broad.mit.edu	36	12	8692018	8692018	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003480	exon10	c.G458A	p.R153H	.	.	.
MFAP5	8076	broad.mit.edu	36	12	8694408	8694408	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003480	exon8	c.C292A	p.H98N	.	.	.
CEP290	80184	broad.mit.edu	36	12	87011736	87011736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon28	c.G3251A	p.R1084Q	.	.	.
MFAP5	8076	broad.mit.edu	36	12	8704726	8704726	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003480	exon3	c.G94T	p.D32Y	.	.	.
CEP290	80184	broad.mit.edu	36	12	87057460	87057460	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025114	exon4	c.G193T	p.E65X	.	.	.
WNK1	65125	broad.mit.edu	36	12	876959	876959	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213655	exon25	c.C7055A	p.S2352Y	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88539498	88539498	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon9	c.A1546G	p.T516A	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88560104	88560104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon2	c.G368A	p.G123D	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8867222	8867222	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon2	c.C240A	p.S80S	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8880125	8880125	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon7	c.G651A	p.P217P	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8896135	8896135	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon20	c.C2526A	p.T842T	.	.	.
A2ML1	144568	broad.mit.edu	36	12	8912193	8912193	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144670	exon31	c.G4034A	p.R1345Q	.	.	.
LUM	4060	broad.mit.edu	36	12	90026371	90026371	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002345	exon2	c.G517T	p.E173X	.	.	.
DCN	1634	broad.mit.edu	36	12	90069569	90069569	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001920	exon7	c.A878G	p.Y293C	.	.	.
A2M	2	broad.mit.edu	36	12	9150123	9150123	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000014	exon10	c.A1080G	p.R360R	.	.	.
EEA1	8411	broad.mit.edu	36	12	91695557	91695557	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003566	exon27	c.G3907T	p.E1303X	.	.	.
EEA1	8411	broad.mit.edu	36	12	91726956	91726956	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003566	exon18	c.A2307C	p.E769D	.	.	.
EEA1	8411	broad.mit.edu	36	12	91770199	91770199	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003566	exon8	c.A525G	p.I175M	.	.	.
PZP	5858	broad.mit.edu	36	12	9209151	9209151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002864	exon19	c.G2338A	p.E780K	.	.	.
PZP	5858	broad.mit.edu	36	12	9240546	9240546	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002864	exon9	c.T870C	p.L290L	.	.	.
PZP	5858	broad.mit.edu	36	12	9244807	9244807	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002864	exon6	c.A618G	p.V206V	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93165812	93165812	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005761	exon13	c.C2391A	p.V797V	.	.	.
CCDC41	51134	broad.mit.edu	36	12	93226741	93226741	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042399	exon16	c.A2085G	p.E695E	.	.	.
USP44	84101	broad.mit.edu	36	12	94451617	94451617	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon2	c.A547C	p.K183Q	.	.	.
NTN4	59277	broad.mit.edu	36	12	94705258	94705258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021229	exon2	c.G175A	p.E59K	.	.	.
CCDC38	120935	broad.mit.edu	36	12	94797698	94797698	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182496	exon12	c.G997T	p.A333S	.	.	.
AMDHD1	144193	broad.mit.edu	36	12	94880284	94880284	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152435	exon6	c.G834A	p.A278A	.	.	.
HAL	3034	broad.mit.edu	36	12	94894582	94894582	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002108	exon19	c.G1688A	p.G563D	.	.	.
CDK17	5128	broad.mit.edu	36	12	95241879	95241879	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002595	exon3	c.G261T	p.M87I	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95869385	95869385	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152905	exon15	c.T1856G	p.I619S	.	.	.
TMPO	7112	broad.mit.edu	36	12	97455449	97455449	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032283	exon4	c.A631G	p.T211A	.	.	.
TMPO	7112	broad.mit.edu	36	12	97465713	97465713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032283	exon9	c.C1311T	p.N437N	.	.	.
APAF1	317	broad.mit.edu	36	12	97580450	97580450	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon6	c.G763T	p.D255Y	.	.	.
APAF1	317	broad.mit.edu	36	12	97584205	97584205	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon9	c.G1268A	p.R423H	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98164735	98164735	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152788	exon13	c.G1795T	p.E599X	.	.	.
FAM71C	196472	broad.mit.edu	36	12	98566589	98566589	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153364	exon1	c.T506G	p.L169R	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	98690873	98690873	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152788	exon8	c.G1086T	p.K362N	.	.	.
KLRF1	51348	broad.mit.edu	36	12	9888287	9888287	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016523	exon6	c.C594A	p.F198L	.	.	.
DEPDC4	120863	broad.mit.edu	36	12	99180253	99180253	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152317	exon3	c.T620G	p.L207R	.	.	.
NR1H4	9971	broad.mit.edu	36	12	99481351	99481351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005123	exon11	c.G1372T	p.D458Y	.	.	.
MYBPC1	4604	broad.mit.edu	36	12	100547342	100547342	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CLEC1A	51267	broad.mit.edu	36	12	10119365	10119365	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
STAB2	55576	broad.mit.edu	36	12	102566735	102566735	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KLRC1	3821	broad.mit.edu	36	12	10490408	10490408	+	3'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BTBD11	121551	broad.mit.edu	36	12	106560087	106560087	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ACACB	32	broad.mit.edu	36	12	108182256	108182256	+	Intron	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108364470	108364470	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NOS1	4842	broad.mit.edu	36	12	116148965	116148965	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HPD	3242	broad.mit.edu	36	12	120776984	120776984	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121378437	121378437	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128750301	128750301	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129501847	129501847	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13719934	13719934	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SOX5	6660	broad.mit.edu	36	12	23619854	23619854	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SOX5	6660	broad.mit.edu	36	12	24256613	24256613	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C12orf67	144360	broad.mit.edu	36	12	24628156	24628156	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARNTL2	56938	broad.mit.edu	36	12	27444723	27444723	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAR2	55711	broad.mit.edu	36	12	29337680	29337680	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	12	31159114	31159114	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	12	31180342	31180342	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CPNE8	144402	broad.mit.edu	36	12	37410344	37410344	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38050337	38050337	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39043632	39043632	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CNTN1	1272	broad.mit.edu	36	12	39604732	39604732	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PPHLN1	51535	broad.mit.edu	36	12	40997973	40997973	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43853915	43853915	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC48A1	55652	broad.mit.edu	36	12	46460617	46460617	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	C	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CACNB3	784	broad.mit.edu	36	12	47503860	47503860	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RHEBL1	121268	broad.mit.edu	36	12	47747093	47747093	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50469323	50469323	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KRT5	3852	broad.mit.edu	36	12	51197290	51197290	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GPR84	53831	broad.mit.edu	36	12	53042709	53042709	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OR10A7	121364	broad.mit.edu	36	12	53901073	53901073	+	5'Flank	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54375698	54375698	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OBFC2B	79035	broad.mit.edu	36	12	54905758	54905758	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MARS	4141	broad.mit.edu	36	12	56193020	56193020	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
USP15	9958	broad.mit.edu	36	12	60974365	60974365	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IRAK3	11213	broad.mit.edu	36	12	64925319	64925319	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CAND1	55832	broad.mit.edu	36	12	65972834	65972834	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NUP107	57122	broad.mit.edu	36	12	67413663	67413663	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LRRC23	10233	broad.mit.edu	36	12	6886734	6886734	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PTPRR	5801	broad.mit.edu	36	12	69444837	69444837	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZFC3H1	196441	broad.mit.edu	36	12	70318574	70318574	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PEX5	5830	broad.mit.edu	36	12	7246471	7246471	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OSBPL8	114882	broad.mit.edu	36	12	75274647	75274647	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZDHHC17	23390	broad.mit.edu	36	12	75760823	75760823	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
E2F7	144455	broad.mit.edu	36	12	75951767	75951767	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NAV3	89795	broad.mit.edu	36	12	77039839	77039839	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PPP1R12A	4659	broad.mit.edu	36	12	78711849	78711849	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	12	79172428	79172428	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80179959	80179959	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PPFIA2	8499	broad.mit.edu	36	12	80357966	80357966	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83791246	83791246	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83794518	83794518	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84071056	84071056	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PHC1	1911	broad.mit.edu	36	12	8963734	8963734	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EEA1	8411	broad.mit.edu	36	12	91771821	91771821	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PZP	5858	broad.mit.edu	36	12	9201219	9201219	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93127623	93127623	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CCDC38	120935	broad.mit.edu	36	12	94816381	94816381	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDK17	5128	broad.mit.edu	36	12	95231364	95231364	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NEDD1	121441	broad.mit.edu	36	12	95858310	95858310	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MIR135A2	406926	broad.mit.edu	36	12	96481801	96481801	+	RNA	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANKS1B	56899	broad.mit.edu	36	12	97663641	97663641	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	99007016	99007016	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCYL2	55681	broad.mit.edu	36	12	99209401	99209401	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GAS6	2621	broad.mit.edu	36	13	113564412	113564413	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000820	exon4	c.312_313insA	p.T104fs	.	.	.
FREM2	341640	broad.mit.edu	36	13	38162943	38162944	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon1	c.3462_3463insG	p.K1154fs	.	.	.
NALCN	259232	broad.mit.edu	36	13	100512453	100512453	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon41	c.C4623T	p.S1541S	.	.	.
NALCN	259232	broad.mit.edu	36	13	100560993	100560993	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon20	c.C2342A	p.S781Y	.	.	.
NALCN	259232	broad.mit.edu	36	13	100795706	100795706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052867	exon7	c.C711T	p.Y237Y	.	.	.
TPP2	7174	broad.mit.edu	36	13	102087540	102087540	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003291	exon14	c.A1786C	p.N596H	.	.	.
TPP2	7174	broad.mit.edu	36	13	102107489	102107489	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003291	exon24	c.A3035C	p.E1012A	.	.	.
KDELC1	79070	broad.mit.edu	36	13	102238229	102238229	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024089	exon8	c.C1339A	p.L447I	.	.	.
DAOA	267012	broad.mit.edu	36	13	104922928	104922928	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172370	exon3	c.A174C	p.K58N	.	.	.
DAOA	267012	broad.mit.edu	36	13	104940253	104940253	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161814	exon5	c.T71G	p.L24R	.	.	.
DAOA	267012	broad.mit.edu	36	13	104940412	104940412	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161814	exon5	c.C230A	p.T77N	.	.	.
FAM155A	728215	broad.mit.edu	36	13	107316584	107316584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080396	exon1	c.G362T	p.R121I	.	.	.
LIG4	3981	broad.mit.edu	36	13	107659207	107659207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002312	exon2	c.C2411T	p.S804F	.	.	.
LIG4	3981	broad.mit.edu	36	13	107661038	107661038	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002312	exon2	c.T580G	p.L194V	.	.	.
LIG4	3981	broad.mit.edu	36	13	107661125	107661125	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002312	exon2	c.G493T	p.D165Y	.	.	.
MYO16	23026	broad.mit.edu	36	13	108116377	108116377	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon2	c.G171T	p.E57D	.	.	.
MYO16	23026	broad.mit.edu	36	13	108360397	108360397	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198950	exon16	c.A1823T	p.Q608L	.	.	.
COL4A1	1282	broad.mit.edu	36	13	109625690	109625690	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001845	exon37	c.A3074T	p.K1025I	.	.	.
ING1	3621	broad.mit.edu	36	13	110169945	110169945	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005537	exon2	c.G934A	p.D312N	.	.	.
C13orf28	122258	broad.mit.edu	36	13	112095353	112095353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145248	exon2	c.C112T	p.P38S	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112191919	112191919	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006322	exon21	c.C2542T	p.R848X	.	.	.
CUL4A	8451	broad.mit.edu	36	13	112945295	112945295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008895	exon11	c.G1048A	p.A350T	.	.	.
GRTP1	79774	broad.mit.edu	36	13	113047224	113047224	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024719	exon5	c.G517T	p.E173X	.	.	.
TFDP1	7027	broad.mit.edu	36	13	113334039	113334039	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007111	exon5	c.A287C	p.D96A	.	.	.
FAM70B	348013	broad.mit.edu	36	13	113611606	113611606	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182614	exon5	c.G368T	p.R123I	.	.	.
TUBA3C	7278	broad.mit.edu	36	13	18651677	18651677	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006001	exon2	c.G30A	p.G10G	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18965596	18965596	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141968	exon4	c.G57A	p.A19A	.	.	.
PSPC1	55269	broad.mit.edu	36	13	19202418	19202418	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042414	exon6	c.G1119A	p.R373R	.	.	.
ZMYM5	9205	broad.mit.edu	36	13	19296911	19296911	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142684	exon8	c.A1716G	p.E572E	.	.	.
N6AMT2	221143	broad.mit.edu	36	13	20201263	20201263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174928	exon5	c.C601T	p.R201C	.	.	.
XPO4	64328	broad.mit.edu	36	13	20268919	20268919	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022459	exon17	c.T2600C	p.I867T	.	.	.
XPO4	64328	broad.mit.edu	36	13	20281304	20281304	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022459	exon11	c.C1411T	p.R471X	.	.	.
LATS2	26524	broad.mit.edu	36	13	20447231	20447231	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014572	exon8	c.C3045T	p.S1015S	.	.	.
EFHA1	221154	broad.mit.edu	36	13	21011511	21011511	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152726	exon4	c.C396T	p.I132I	.	.	.
SACS	26278	broad.mit.edu	36	13	22802641	22802641	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.C13374A	p.F4458L	.	.	.
SACS	26278	broad.mit.edu	36	13	22804239	22804239	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.G11776A	p.D3926N	.	.	.
SACS	26278	broad.mit.edu	36	13	22805689	22805689	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.G10326T	p.E3442D	.	.	.
SACS	26278	broad.mit.edu	36	13	22808661	22808661	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.T7354G	p.L2452V	.	.	.
SACS	26278	broad.mit.edu	36	13	22810323	22810323	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.G5692T	p.E1898X	.	.	.
SACS	26278	broad.mit.edu	36	13	22827431	22827431	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon8	c.C1320A	p.F440L	.	.	.
PARP4	143	broad.mit.edu	36	13	23907293	23907293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon31	c.C3986T	p.P1329L	.	.	.
PARP4	143	broad.mit.edu	36	13	23914101	23914101	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon30	c.G3549T	p.E1183D	.	.	.
PARP4	143	broad.mit.edu	36	13	23973835	23973835	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon3	c.G270T	p.K90N	.	.	.
ATP12A	479	broad.mit.edu	36	13	24163365	24163365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001185085	exon8	c.G1063A	p.E355K	.	.	.
ATP12A	479	broad.mit.edu	36	13	24179302	24179302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon16	c.G2329A	p.A777T	.	.	.
RNF17	56163	broad.mit.edu	36	13	24346298	24346298	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184993	exon33	c.G4482A	p.A1494A	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24384888	24384888	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon2	c.A276C	p.K92N	.	.	.
CENPJ	55835	broad.mit.edu	36	13	24385030	24385030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018451	exon2	c.G134A	p.R45Q	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24569766	24569766	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030979	exon1	c.C1430T	p.A477V	.	.	.
PABPC3	5042	broad.mit.edu	36	13	24569920	24569920	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030979	exon1	c.A1584G	p.Q528Q	.	.	.
NUPL1	9818	broad.mit.edu	36	13	24781390	24781390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014089	exon3	c.G256A	p.A86T	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25027135	25027135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon13	c.G1192A	p.D398N	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25052071	25052071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon22	c.G1993A	p.E665K	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25440790	25440790	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon35	c.C3350T	p.A1117V	.	.	.
RNF6	6049	broad.mit.edu	36	13	25686658	25686658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183044	exon5	c.G1361A	p.R454Q	.	.	.
RNF6	6049	broad.mit.edu	36	13	25687159	25687159	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183044	exon5	c.G860T	p.S287I	.	.	.
RNF6	6049	broad.mit.edu	36	13	25690691	25690691	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183044	exon4	c.A246C	p.Q82H	.	.	.
GPR12	2835	broad.mit.edu	36	13	26231399	26231399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005288	exon2	c.G566A	p.S189N	.	.	.
USP12	219333	broad.mit.edu	36	13	26543234	26543234	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182488	exon8	c.T985G	p.L329V	.	.	.
GTF3A	2971	broad.mit.edu	36	13	26907314	26907314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002097	exon8	c.G918T	p.K306N	.	.	.
MTIF3	219402	broad.mit.edu	36	13	26912364	26912364	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152912	exon3	c.T222G	p.A74A	.	.	.
FLT3	2322	broad.mit.edu	36	13	27487364	27487364	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004119	exon22	c.G2683T	p.D895Y	.	.	.
FLT3	2322	broad.mit.edu	36	13	27521778	27521778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004119	exon7	c.C876T	p.L292L	.	.	.
FLT1	2321	broad.mit.edu	36	13	27775352	27775352	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002019	exon30	c.G3969A	p.P1323P	.	.	.
FLT1	2321	broad.mit.edu	36	13	27939216	27939216	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon3	c.G212T	p.S71I	.	.	.
SLC46A3	283537	broad.mit.edu	36	13	28185578	28185578	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181785	exon3	c.G299A	p.R100Q	.	.	.
SLC46A3	283537	broad.mit.edu	36	13	28190092	28190092	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181785	exon2	c.T44C	p.F15S	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28496903	28496903	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon1	c.G98T	p.R33I	.	.	.
MTUS2	23281	broad.mit.edu	36	13	28497705	28497705	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033602	exon1	c.G900A	p.S300S	.	.	.
SLC7A1	6541	broad.mit.edu	36	13	28995582	28995582	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003045	exon7	c.C870T	p.I290I	.	.	.
HMGB1	3146	broad.mit.edu	36	13	29934703	29934703	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002128	exon4	c.C443G	p.A148G	.	.	.
USPL1	10208	broad.mit.edu	36	13	30130879	30130879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005800	exon9	c.C2665T	p.R889C	.	.	.
ALOX5AP	241	broad.mit.edu	36	13	30216201	30216201	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001629	exon2	c.C75A	p.F25L	.	.	.
C13orf33	84935	broad.mit.edu	36	13	30393721	30393721	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032849	exon4	c.G525T	p.K175N	.	.	.
HSPH1	10808	broad.mit.edu	36	13	30609477	30609477	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006644	exon18	c.C2555A	p.S852Y	.	.	.
B3GALTL	145173	broad.mit.edu	36	13	30720011	30720011	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194318	exon6	c.A367G	p.R123G	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31263953	31263953	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166058	exon14	c.A1084C	p.N362H	.	.	.
FRY	10129	broad.mit.edu	36	13	31633306	31633306	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon17	c.C1810A	p.L604I	.	.	.
FRY	10129	broad.mit.edu	36	13	31700787	31700787	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon40	c.A5401G	p.T1801A	.	.	.
FRY	10129	broad.mit.edu	36	13	31709933	31709933	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon44	c.C6228T	p.L2076L	.	.	.
FRY	10129	broad.mit.edu	36	13	31711456	31711456	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon45	c.C6486A	p.F2162L	.	.	.
FRY	10129	broad.mit.edu	36	13	31733944	31733944	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon52	c.C7608A	p.H2536Q	.	.	.
FRY	10129	broad.mit.edu	36	13	31734532	31734532	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon53	c.C7699A	p.H2567N	.	.	.
BRCA2	675	broad.mit.edu	36	13	31805050	31805050	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000059	exon10	c.G1435T	p.D479Y	.	.	.
BRCA2	675	broad.mit.edu	36	13	31810067	31810067	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000059	exon11	c.T3575G	p.F1192C	.	.	.
BRCA2	675	broad.mit.edu	36	13	31851924	31851924	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000059	exon23	c.T8991G	p.Y2997X	.	.	.
BRCA2	675	broad.mit.edu	36	13	31870606	31870606	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000059	exon27	c.C9956A	p.S3319Y	.	.	.
N4BP2L1	90634	broad.mit.edu	36	13	31876488	31876488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052818	exon4	c.G443A	p.R148H	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	31914916	31914916	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033111	exon7	c.C1758A	p.C586X	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	31915245	31915245	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033111	exon7	c.A1429G	p.N477D	.	.	.
N4BP2L2	10443	broad.mit.edu	36	13	32008158	32008158	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014887	exon2	c.A1007C	p.E336A	.	.	.
NBEA	26960	broad.mit.edu	36	13	34513082	34513082	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon2	c.G307T	p.E103X	.	.	.
NBEA	26960	broad.mit.edu	36	13	34570435	34570435	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon11	c.G1573A	p.A525T	.	.	.
NBEA	26960	broad.mit.edu	36	13	34631384	34631384	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon22	c.G3076T	p.D1026Y	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35294921	35294921	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195416	exon7	c.A578G	p.K193R	.	.	.
SOHLH2	54937	broad.mit.edu	36	13	35642763	35642763	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017826	exon10	c.C1162A	p.H388N	.	.	.
C13orf36	400120	broad.mit.edu	36	13	36167536	36167536	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203451	exon2	c.C321A	p.S107S	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36576626	36576626	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145203	exon1	c.C768T	p.F256F	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36576924	36576924	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145203	exon1	c.A470G	p.D157G	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36577040	36577040	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145203	exon1	c.C354T	p.D118D	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36577379	36577379	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145203	exon1	c.C15T	p.S5S	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37127288	37127288	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135957	exon7	c.C1821A	p.I607I	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37135775	37135775	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135957	exon6	c.C1466A	p.S489Y	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37164442	37164442	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135957	exon4	c.C928A	p.L310M	.	.	.
FREM2	341640	broad.mit.edu	36	13	38163305	38163305	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon1	c.A3824G	p.D1275G	.	.	.
FREM2	341640	broad.mit.edu	36	13	38348512	38348512	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon20	c.T8537C	p.F2846S	.	.	.
C13orf23	80209	broad.mit.edu	36	13	38485130	38485130	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025138	exon11	c.T2259A	p.A753A	.	.	.
C13orf23	80209	broad.mit.edu	36	13	38485469	38485469	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025138	exon11	c.C1920T	p.G640G	.	.	.
C13orf23	80209	broad.mit.edu	36	13	38498481	38498481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025138	exon6	c.C413T	p.S138F	.	.	.
NHLRC3	387921	broad.mit.edu	36	13	38514246	38514246	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012754	exon4	c.C390A	p.F130L	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40602969	40602969	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152903	exon1	c.G1679T	p.R560I	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40603387	40603387	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152903	exon1	c.C1261T	p.R421C	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40604511	40604511	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152903	exon1	c.C137A	p.S46Y	.	.	.
NAA16	79612	broad.mit.edu	36	13	40830600	40830600	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024561	exon11	c.A1248C	p.K416N	.	.	.
NAA16	79612	broad.mit.edu	36	13	40839605	40839605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024561	exon14	c.G1570A	p.D524N	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41087137	41087137	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015058	exon38	c.C4695T	p.G1565G	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41173627	41173627	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015058	exon28	c.A3265C	p.R1089R	.	.	.
KIAA0564	23078	broad.mit.edu	36	13	41199426	41199426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015058	exon24	c.G2662A	p.E888K	.	.	.
AKAP11	11215	broad.mit.edu	36	13	41775824	41775824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016248	exon8	c.G4942A	p.A1648T	.	.	.
C13orf31	144811	broad.mit.edu	36	13	43362275	43362275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128303	exon6	c.C1159T	p.L387F	.	.	.
TSC22D1	8848	broad.mit.edu	36	13	43908694	43908694	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006022	exon1	c.C71A	p.S24Y	.	.	.
TSC22D1	8848	broad.mit.edu	36	13	44046234	44046234	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183422	exon1	c.G1977T	p.Q659H	.	.	.
NUFIP1	26747	broad.mit.edu	36	13	44413420	44413420	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012345	exon10	c.T1409G	p.I470S	.	.	.
SLC25A30	253512	broad.mit.edu	36	13	44871114	44871114	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010875	exon8	c.A714G	p.R238R	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45439928	45439928	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015070	exon15	c.C4033T	p.R1345X	.	.	.
CPB2	1361	broad.mit.edu	36	13	45527918	45527918	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016413	exon9	c.G956A	p.G319D	.	.	.
C13orf18	80183	broad.mit.edu	36	13	45840870	45840870	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025113	exon4	c.A617T	p.K206M	.	.	.
LRCH1	23143	broad.mit.edu	36	13	46171478	46171478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164211	exon10	c.G1252A	p.A418T	.	.	.
HTR2A	3356	broad.mit.edu	36	13	46307305	46307305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165947	exon3	c.C832T	p.L278F	.	.	.
MED4	29079	broad.mit.edu	36	13	47558589	47558589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014166	exon3	c.G193A	p.V65I	.	.	.
RB1	5925	broad.mit.edu	36	13	47779474	47779474	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon2	c.G195T	p.K65N	.	.	.
RB1	5925	broad.mit.edu	36	13	47814844	47814844	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon3	c.G373T	p.E125X	.	.	.
RB1	5925	broad.mit.edu	36	13	47835071	47835071	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000321	exon8	c.G838T	p.E280X	.	.	.
RCBTB2	1102	broad.mit.edu	36	13	47987772	47987772	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001268	exon5	c.T149C	p.V50A	.	.	.
CAB39L	81617	broad.mit.edu	36	13	48811862	48811862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079670	exon9	c.G642T	p.E214D	.	.	.
SERPINE3	647174	broad.mit.edu	36	13	50816402	50816402	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101320	exon2	c.A270T	p.K90N	.	.	.
INTS6	26512	broad.mit.edu	36	13	50846482	50846482	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012141	exon15	c.G1967T	p.R656I	.	.	.
WDFY2	115825	broad.mit.edu	36	13	51230420	51230420	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052950	exon11	c.A1156G	p.T386A	.	.	.
DHRS12	79758	broad.mit.edu	36	13	51271794	51271794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024705	exon2	c.G3A	p.M1I	.	.	.
ATP7B	540	broad.mit.edu	36	13	51406984	51406984	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000053	exon21	c.A4307G	p.D1436G	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51496490	51496490	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004127	exon3	c.C623A	p.S208Y	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51496793	51496793	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004127	exon3	c.T926G	p.F309C	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51497067	51497067	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004127	exon3	c.T1200C	p.F400F	.	.	.
UTP14C	9724	broad.mit.edu	36	13	51502527	51502527	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021645	exon2	c.C1586A	p.P529H	.	.	.
NEK5	341676	broad.mit.edu	36	13	51565337	51565337	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199289	exon13	c.C1062T	p.V354V	.	.	.
NEK3	4752	broad.mit.edu	36	13	51605354	51605354	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146099	exon15	c.G1395T	p.E465D	.	.	.
HNRNPA1L2	144983	broad.mit.edu	36	13	52115403	52115403	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001011725	exon6	c.A775C	p.S259R	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57106210	57106210	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon1	c.C1529A	p.S510Y	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57106222	57106222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon1	c.C1541T	p.S514L	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57196835	57196835	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon4	c.T2886G	p.N962K	.	.	.
DIAPH3	81624	broad.mit.edu	36	13	59311507	59311507	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030932	exon17	c.C2025A	p.T675T	.	.	.
TDRD3	81550	broad.mit.edu	36	13	60000984	60000984	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030794	exon11	c.A1345C	p.I449L	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60883984	60883984	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022843	exon2	c.C2249A	p.S750Y	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60885704	60885704	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022843	exon2	c.C529A	p.L177I	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66103378	66103378	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020403	exon3	c.G3203T	p.R1068M	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66698977	66698977	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020403	exon2	c.G1597T	p.E533X	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66699620	66699620	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020403	exon2	c.A954C	p.L318F	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69191684	69191684	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020866	exon9	c.T1833A	p.S611R	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69269057	69269057	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020866	exon7	c.C1453T	p.L485L	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69354526	69354526	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020866	exon5	c.G1117T	p.E373X	.	.	.
KLHL1	57626	broad.mit.edu	36	13	69579805	69579805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020866	exon1	c.G28A	p.D10N	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74764317	74764317	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014832	exon19	c.C3408A	p.S1136R	.	.	.
LMO7	4008	broad.mit.edu	36	13	75093836	75093836	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005358	exon1	c.G6T	p.K2N	.	.	.
LMO7	4008	broad.mit.edu	36	13	75314069	75314069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015842	exon21	c.G3281A	p.R1094H	.	.	.
FBXL3	26224	broad.mit.edu	36	13	76479819	76479819	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012158	exon5	c.T749C	p.V250A	.	.	.
SCEL	8796	broad.mit.edu	36	13	77028741	77028741	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144777	exon3	c.G53T	p.S18I	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77372103	77372103	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122659	exon6	c.C1086A	p.S362R	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77375336	77375336	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122659	exon3	c.C757T	p.R253X	.	.	.
RNF219	79596	broad.mit.edu	36	13	78088283	78088283	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024546	exon6	c.C1614A	p.I538I	.	.	.
RBM26	64062	broad.mit.edu	36	13	78792758	78792758	+	Nonstop_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022118	exon21	c.G2942T	p.X981L	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352778	83352778	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052910	exon1	c.C866A	p.P289H	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83352884	83352884	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052910	exon1	c.G760T	p.E254X	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85266412	85266412	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.G2233T	p.E745X	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85268077	85268077	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.C568A	p.L190I	.	.	.
DCT	1638	broad.mit.edu	36	13	93893842	93893842	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001922	exon7	c.T1230G	p.F410L	.	.	.
DCT	1638	broad.mit.edu	36	13	93912331	93912331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001922	exon5	c.G977A	p.R326Q	.	.	.
ABCC4	10257	broad.mit.edu	36	13	94684894	94684894	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105515	exon4	c.G502A	p.V168I	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95039419	95039419	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon18	c.T1960C	p.S654P	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95040593	95040593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon16	c.G1727A	p.R576Q	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95075117	95075117	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon8	c.A878G	p.E293G	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95080339	95080339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon7	c.C715T	p.L239F	.	.	.
DNAJC3	5611	broad.mit.edu	36	13	95210329	95210329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006260	exon6	c.G581A	p.R194Q	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95463581	95463581	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020121	exon5	c.T641C	p.V214A	.	.	.
FARP1	10160	broad.mit.edu	36	13	97663618	97663618	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005766	exon2	c.T121C	p.S41P	.	.	.
FARP1	10160	broad.mit.edu	36	13	97694950	97694950	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001715	exon3	c.C376A	p.L126I	.	.	.
STK24	8428	broad.mit.edu	36	13	97925565	97925565	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003576	exon4	c.G415T	p.E139X	.	.	.
GPR183	1880	broad.mit.edu	36	13	98745643	98745643	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004951	exon2	c.T758A	p.F253Y	.	.	.
ZIC2	7546	broad.mit.edu	36	13	99433373	99433373	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007129	exon1	c.A1054G	p.I352V	.	.	.
NALCN	259232	broad.mit.edu	36	13	100631437	100631437	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
COL4A2	1284	broad.mit.edu	36	13	109878804	109878804	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ANKRD10	55608	broad.mit.edu	36	13	110356371	110356371	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMCO3	55002	broad.mit.edu	36	13	113212547	113212547	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EFHA1	221154	broad.mit.edu	36	13	20993373	20993373	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RXFP2	122042	broad.mit.edu	36	13	31264806	31264806	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32166450	32166450	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NBEA	26960	broad.mit.edu	36	13	34654666	34654666	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35909759	35909759	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37111384	37111384	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FREM2	341640	broad.mit.edu	36	13	38328404	38328404	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SLC25A15	10166	broad.mit.edu	36	13	40280739	40280739	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TNFSF11	8600	broad.mit.edu	36	13	42073018	42073018	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PHF11	51131	broad.mit.edu	36	13	48993022	48993022	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
INTS6	26512	broad.mit.edu	36	13	50837886	50837886	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ATP7B	540	broad.mit.edu	36	13	51447312	51447312	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TBC1D4	9882	broad.mit.edu	36	13	74764420	74764420	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DCT	1638	broad.mit.edu	36	13	93910335	93910335	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95040703	95040703	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TM9SF2	9375	broad.mit.edu	36	13	99012937	99012937	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MIR127	406914	broad.mit.edu	36	14	100418072	100418072	+	5'Flank	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134888	exon1	c.G2807A	p.R936H	.	.	.
DYNC1H1	1778	broad.mit.edu	36	14	101553246	101553246	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001376	exon39	c.C7917T	p.C2639C	.	.	.
HSP90AA1	3320	broad.mit.edu	36	14	101619979	101619979	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005348	exon7	c.G1242T	p.K414N	.	.	.
RAGE	5891	broad.mit.edu	36	14	101768680	101768680	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014226	exon9	c.G811A	p.D271N	.	.	.
CINP	51550	broad.mit.edu	36	14	101895530	101895530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177612	exon2	c.C155T	p.A52V	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101970744	101970744	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014844	exon9	c.T1837G	p.L613V	.	.	.
TECPR2	9895	broad.mit.edu	36	14	101974207	101974207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014844	exon10	c.C2490T	p.G830G	.	.	.
MARK3	4140	broad.mit.edu	36	14	103001759	103001759	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128919	exon8	c.A653G	p.Y218C	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103285998	103285998	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015316	exon8	c.A855C	p.Q285H	.	.	.
PPP1R13B	23368	broad.mit.edu	36	14	103314887	103314887	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015316	exon4	c.G302A	p.R101Q	.	.	.
TDRD9	122402	broad.mit.edu	36	14	103550850	103550850	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153046	exon21	c.C2142A	p.I714I	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104481435	104481435	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.G11398T	p.D3800Y	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104482182	104482182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.G10651A	p.G3551S	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104486497	104486497	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.C6336T	p.V2112V	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104486812	104486812	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.C6021T	p.I2007I	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104489746	104489746	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.G3087T	p.E1029D	.	.	.
POTEG	404785	broad.mit.edu	36	14	18633489	18633489	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005356	exon5	c.G1003T	p.D335Y	.	.	.
POTEG	404785	broad.mit.edu	36	14	18644229	18644229	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005356	exon9	c.T1286C	p.F429S	.	.	.
OR4M1	441670	broad.mit.edu	36	14	19318650	19318650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005500	exon1	c.C329T	p.S110L	.	.	.
OR4K15	81127	broad.mit.edu	36	14	19513929	19513929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005486	exon1	c.C412T	p.L138F	.	.	.
OR4L1	122742	broad.mit.edu	36	14	19598498	19598498	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004717	exon1	c.G455T	p.G152V	.	.	.
OR4K17	390436	broad.mit.edu	36	14	19655722	19655722	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004715	exon1	c.C317A	p.S106Y	.	.	.
OR4K17	390436	broad.mit.edu	36	14	19656349	19656349	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004715	exon1	c.C944A	p.P315Q	.	.	.
PARP2	10038	broad.mit.edu	36	14	19892873	19892873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042618	exon9	c.C829T	p.R277W	.	.	.
RNASE11	122651	broad.mit.edu	36	14	20122305	20122305	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145250	exon3	c.C169A	p.L57M	.	.	.
RNASE6	6039	broad.mit.edu	36	14	20320070	20320070	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005615	exon2	c.C372A	p.F124L	.	.	.
RNASE3	6037	broad.mit.edu	36	14	20429704	20429704	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002935	exon2	c.A19G	p.T7A	.	.	.
RNASE8	122665	broad.mit.edu	36	14	20596078	20596078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138331	exon1	c.C187T	p.R63W	.	.	.
OR5AU1	390445	broad.mit.edu	36	14	20693596	20693596	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004731	exon1	c.C429A	p.I143I	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20859332	20859332	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020366	exon12	c.G1542T	p.E514D	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20866469	20866469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020366	exon18	c.G2942A	p.R981Q	.	.	.
SUPT16H	11198	broad.mit.edu	36	14	20895317	20895317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007192	exon22	c.C2539T	p.R847W	.	.	.
CHD8	57680	broad.mit.edu	36	14	20943447	20943447	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020920	exon16	c.C2231T	p.A744V	.	.	.
TOX4	9878	broad.mit.edu	36	14	21033258	21033258	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014828	exon8	c.T1672G	p.L558V	.	.	.
OR10G3	26533	broad.mit.edu	36	14	21108515	21108515	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005465	exon1	c.C201T	p.L67L	.	.	.
OR10G2	26534	broad.mit.edu	36	14	21172218	21172218	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005466	exon1	c.C621T	p.D207D	.	.	.
MMP14	4323	broad.mit.edu	36	14	22375871	22375871	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004995	exon1	c.C5A	p.S2Y	.	.	.
PRMT5	10419	broad.mit.edu	36	14	22463970	22463970	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006109	exon8	c.C897A	p.L299L	.	.	.
CDH24	64403	broad.mit.edu	36	14	22593216	22593216	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022478	exon6	c.C946T	p.R316X	.	.	.
MYH6	4624	broad.mit.edu	36	14	22924032	22924032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002471	exon35	c.C5222T	p.S1741L	.	.	.
MYH6	4624	broad.mit.edu	36	14	22927291	22927291	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002471	exon30	c.G4272T	p.Q1424H	.	.	.
MYH6	4624	broad.mit.edu	36	14	22939450	22939450	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002471	exon14	c.T1436C	p.I479T	.	.	.
MYH6	4624	broad.mit.edu	36	14	22944298	22944298	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002471	exon5	c.A476G	p.D159G	.	.	.
MYH7	4625	broad.mit.edu	36	14	22966702	22966702	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000257	exon16	c.G1820A	p.G607D	.	.	.
NGDN	25983	broad.mit.edu	36	14	23017069	23017069	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042635	exon11	c.G942A	p.R314R	.	.	.
PCK2	5106	broad.mit.edu	36	14	23639294	23639294	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018073	exon7	c.T1266C	p.P422P	.	.	.
RNF31	55072	broad.mit.edu	36	14	23698914	23698914	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017999	exon19	c.C2901A	p.G967G	.	.	.
IPO4	79711	broad.mit.edu	36	14	23725996	23725996	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024658	exon8	c.G684T	p.L228F	.	.	.
TM9SF1	10548	broad.mit.edu	36	14	23729439	23729439	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014842	exon5	c.T1414G	p.F472V	.	.	.
MDP1	145553	broad.mit.edu	36	14	23754800	23754800	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199822	exon2	c.T81C	p.P27P	.	.	.
GMPR2	51292	broad.mit.edu	36	14	23777806	23777806	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016576	exon9	c.C1083A	p.I361I	.	.	.
TGM1	7051	broad.mit.edu	36	14	23799683	23799683	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000359	exon4	c.T570C	p.S190S	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23861183	23861183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198568	exon20	c.C2515T	p.R839W	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23863222	23863222	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198568	exon16	c.G1932T	p.K644N	.	.	.
NFATC4	4776	broad.mit.edu	36	14	23915717	23915717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136022	exon10	c.C2623T	p.R875W	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23947459	23947459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025081	exon3	c.G743A	p.G248E	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23948274	23948274	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025081	exon4	c.G1434T	p.Q478H	.	.	.
STXBP6	29091	broad.mit.edu	36	14	24358166	24358166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014178	exon5	c.C526T	p.R176C	.	.	.
NOVA1	4857	broad.mit.edu	36	14	25987145	25987145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006489	exon4	c.G1312A	p.E438K	.	.	.
FOXG1	2290	broad.mit.edu	36	14	28307466	28307466	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005249	exon1	c.C1230T	p.L410L	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29116369	29116369	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon18	c.C2565T	p.I855I	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29173384	29173384	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon8	c.G1305T	p.K435N	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29177694	29177694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon5	c.G864T	p.K288N	.	.	.
PRKD1	5587	broad.mit.edu	36	14	29264517	29264517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002742	exon2	c.G379A	p.D127N	.	.	.
SCFD1	23256	broad.mit.edu	36	14	30246948	30246948	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182835	exon18	c.C1354A	p.L452I	.	.	.
STRN3	29966	broad.mit.edu	36	14	30475580	30475580	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083893	exon6	c.T718C	p.S240P	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30645785	30645785	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015382	exon38	c.C7044T	p.D2348D	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30683774	30683774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015382	exon16	c.C2621A	p.T874K	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30710879	30710879	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015382	exon8	c.G1271T	p.R424I	.	.	.
AKAP6	9472	broad.mit.edu	36	14	31972591	31972591	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon2	c.C141T	p.D47D	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32139604	32139604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon7	c.G2585A	p.R862Q	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32312652	32312652	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon12	c.C3390A	p.I1130I	.	.	.
AKAP6	9472	broad.mit.edu	36	14	32362095	32362095	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004274	exon13	c.C5325T	p.D1775D	.	.	.
NPAS3	64067	broad.mit.edu	36	14	32754501	32754501	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173159	exon3	c.A303G	p.Q101Q	.	.	.
NPAS3	64067	broad.mit.edu	36	14	33274234	33274234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022123	exon6	c.G701A	p.R234Q	.	.	.
EGLN3	112399	broad.mit.edu	36	14	33470150	33470150	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022073	exon2	c.G380A	p.G127E	.	.	.
BAZ1A	11177	broad.mit.edu	36	14	34341923	34341923	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013448	exon7	c.A749C	p.K250T	.	.	.
PPP2R3C	55012	broad.mit.edu	36	14	34624691	34624691	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017917	exon13	c.C1218A	p.I406I	.	.	.
PPP2R3C	55012	broad.mit.edu	36	14	34630033	34630033	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017917	exon11	c.C1107A	p.F369L	.	.	.
SFTA3	253970	broad.mit.edu	36	14	36052075	36052075	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101341	exon1	c.G35T	p.R12M	.	.	.
CLEC14A	161198	broad.mit.edu	36	14	37793581	37793581	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175060	exon1	c.C1398T	p.V466V	.	.	.
CLEC14A	161198	broad.mit.edu	36	14	37794640	37794640	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175060	exon1	c.C339A	p.F113L	.	.	.
PNN	5411	broad.mit.edu	36	14	38720693	38720693	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002687	exon9	c.G2029T	p.G677X	.	.	.
MIA2	117153	broad.mit.edu	36	14	38775928	38775928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054024	exon2	c.G167A	p.R56Q	.	.	.
MIA2	117153	broad.mit.edu	36	14	38786805	38786805	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054024	exon4	c.G1276T	p.E426X	.	.	.
CTAGE5	4253	broad.mit.edu	36	14	38832301	38832301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203356	exon6	c.G373A	p.E125K	.	.	.
CTAGE5	4253	broad.mit.edu	36	14	38859935	38859935	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203356	exon19	c.A1509G	p.R503R	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41430445	41430445	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152447	exon4	c.T1628C	p.V543A	.	.	.
FSCB	84075	broad.mit.edu	36	14	44044442	44044442	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032135	exon1	c.C1499A	p.S500Y	.	.	.
FSCB	84075	broad.mit.edu	36	14	44045400	44045400	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032135	exon1	c.G541T	p.A181S	.	.	.
KLHL28	54813	broad.mit.edu	36	14	44473143	44473143	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017658	exon3	c.G1268T	p.R423I	.	.	.
KLHL28	54813	broad.mit.edu	36	14	44473308	44473308	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017658	exon3	c.C1103A	p.S368Y	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44502159	44502159	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015091	exon1	c.G785A	p.R262Q	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44612488	44612488	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015091	exon19	c.G5137A	p.D1713N	.	.	.
FANCM	57697	broad.mit.edu	36	14	44714269	44714269	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020937	exon14	c.G2562T	p.K854N	.	.	.
FANCM	57697	broad.mit.edu	36	14	44737845	44737845	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020937	exon22	c.A5965C	p.N1989H	.	.	.
RPL10L	140801	broad.mit.edu	36	14	46190152	46190152	+	Missense_Mutation	SNP	C	T	T	rs61745038	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080746	exon1	c.G538A	p.E180K	.	.	.
RPL10L	140801	broad.mit.edu	36	14	46190591	46190591	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080746	exon1	c.C99A	p.I33I	.	.	.
MGAT2	4247	broad.mit.edu	36	14	49158243	49158243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002408	exon1	c.C507T	p.F169F	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49365190	49365190	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004713	exon14	c.G1318T	p.G440X	.	.	.
SDCCAG1	9147	broad.mit.edu	36	14	49367806	49367806	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004713	exon11	c.G906T	p.K302N	.	.	.
ARF6	382	broad.mit.edu	36	14	49430295	49430295	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001663	exon2	c.T91C	p.Y31H	.	.	.
SOS2	6655	broad.mit.edu	36	14	49675146	49675146	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006939	exon18	c.A2892C	p.E964D	.	.	.
SOS2	6655	broad.mit.edu	36	14	49676495	49676495	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006939	exon17	c.C2700T	p.D900D	.	.	.
L2HGDH	79944	broad.mit.edu	36	14	49805786	49805786	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024884	exon7	c.C751T	p.R251X	.	.	.
MAP4K5	11183	broad.mit.edu	36	14	50022650	50022650	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006575	exon4	c.C179A	p.S60Y	.	.	.
ATL1	51062	broad.mit.edu	36	14	50128022	50128022	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181598	exon4	c.A437G	p.D146G	.	.	.
PYGL	5836	broad.mit.edu	36	14	50448265	50448265	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002863	exon16	c.C1902T	p.D634D	.	.	.
PYGL	5836	broad.mit.edu	36	14	50451818	50451818	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002863	exon11	c.C1389T	p.I463I	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50518499	50518499	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015163	exon8	c.C1676T	p.T559I	.	.	.
FRMD6	122786	broad.mit.edu	36	14	51241376	51241376	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042481	exon7	c.C507T	p.F169F	.	.	.
FRMD6	122786	broad.mit.edu	36	14	51256570	51256570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042481	exon12	c.G1048A	p.D350N	.	.	.
FRMD6	122786	broad.mit.edu	36	14	51262271	51262271	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042481	exon14	c.C1493A	p.S498Y	.	.	.
NID2	22795	broad.mit.edu	36	14	51547441	51547441	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007361	exon18	c.A3625T	p.K1209X	.	.	.
PTGER2	5732	broad.mit.edu	36	14	51851370	51851370	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000956	exon1	c.C354A	p.F118L	.	.	.
GMFB	2764	broad.mit.edu	36	14	54020228	54020228	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004124	exon2	c.C11A	p.S4Y	.	.	.
EXOC5	10640	broad.mit.edu	36	14	56766332	56766332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006544	exon12	c.G1169A	p.R390K	.	.	.
C14orf105	55195	broad.mit.edu	36	14	57027467	57027467	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018168	exon2	c.G299T	p.R100I	.	.	.
C14orf37	145407	broad.mit.edu	36	14	57669812	57669812	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001872	exon3	c.A1370C	p.D457A	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57866013	57866013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023000	exon10	c.G677A	p.R226K	.	.	.
ARID4A	5926	broad.mit.edu	36	14	57890226	57890226	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023000	exon17	c.C1753T	p.R585X	.	.	.
KIAA0586	9786	broad.mit.edu	36	14	57980547	57980547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014749	exon6	c.G708T	p.E236D	.	.	.
PPM1A	5494	broad.mit.edu	36	14	59819271	59819271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021003	exon2	c.C97T	p.R33C	.	.	.
PPM1A	5494	broad.mit.edu	36	14	59826309	59826309	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021003	exon4	c.G985A	p.D329N	.	.	.
C14orf39	317761	broad.mit.edu	36	14	60021518	60021518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174978	exon2	c.G32A	p.R11K	.	.	.
SIX4	51804	broad.mit.edu	36	14	60250055	60250055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon3	c.G2169T	p.E723D	.	.	.
SIX4	51804	broad.mit.edu	36	14	60256396	60256396	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017420	exon2	c.G1384A	p.A462T	.	.	.
KCNH5	27133	broad.mit.edu	36	14	62243998	62243998	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139318	exon11	c.A2948C	p.K983T	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63567500	63567500	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon45	c.G6893A	p.R2298K	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63610450	63610450	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon53	c.A10709C	p.K3570T	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63689091	63689091	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon85	c.T15696G	p.S5232R	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63722956	63722956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon97	c.C17618T	p.A5873V	.	.	.
ESR2	2100	broad.mit.edu	36	14	63769626	63769626	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001437	exon9	c.G1575A	p.Q525Q	.	.	.
AKAP5	9495	broad.mit.edu	36	14	64005805	64005805	+	Nonsense_Mutation	SNP	G	T	T	rs34433837	byCluster;byFrequency	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004857	exon2	c.G940T	p.E314X	.	.	.
AKAP5	9495	broad.mit.edu	36	14	64006138	64006138	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004857	exon2	c.C1273A	p.L425I	.	.	.
SPTB	6710	broad.mit.edu	36	14	64306135	64306135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000347	exon27	c.C5863T	p.R1955W	.	.	.
GPHN	10243	broad.mit.edu	36	14	66460714	66460714	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020806	exon8	c.G780A	p.Q260Q	.	.	.
FAM71D	161142	broad.mit.edu	36	14	66734713	66734713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173526	exon3	c.G82T	p.D28Y	.	.	.
MPP5	64398	broad.mit.edu	36	14	66838892	66838892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022474	exon7	c.C814T	p.R272C	.	.	.
EIF2S1	1965	broad.mit.edu	36	14	66918076	66918076	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004094	exon6	c.T594G	p.A198A	.	.	.
ARG2	384	broad.mit.edu	36	14	67183434	67183434	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172	exon6	c.G661T	p.D221Y	.	.	.
ACTN1	87	broad.mit.edu	36	14	68420778	68420778	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130005	exon14	c.C1495T	p.R499W	.	.	.
DCAF5	8816	broad.mit.edu	36	14	68590794	68590794	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003861	exon9	c.C2362T	p.R788W	.	.	.
GALNTL1	57452	broad.mit.edu	36	14	68870001	68870001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020692	exon9	c.G898A	p.D300N	.	.	.
SRSF5	6430	broad.mit.edu	36	14	69307498	69307498	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039465	exon7	c.G474T	p.K158N	.	.	.
ADAM21	8747	broad.mit.edu	36	14	69994185	69994185	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003813	exon1	c.C216T	p.H72H	.	.	.
PCNX	22990	broad.mit.edu	36	14	70514435	70514435	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon6	c.G1628A	p.R543Q	.	.	.
PCNX	22990	broad.mit.edu	36	14	70645274	70645274	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon34	c.C6502T	p.R2168X	.	.	.
DPF3	8110	broad.mit.edu	36	14	72229575	72229575	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012074	exon7	c.C704A	p.T235N	.	.	.
DPF3	8110	broad.mit.edu	36	14	72250891	72250891	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012074	exon6	c.C597A	p.V199V	.	.	.
ZFYVE1	53349	broad.mit.edu	36	14	72534557	72534557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021260	exon3	c.G703A	p.D235N	.	.	.
PSEN1	5663	broad.mit.edu	36	14	72734527	72734527	+	Missense_Mutation	SNP	C	T	T	rs63751019	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000021	exon8	c.C805T	p.R269C	.	.	.
NUMB	8650	broad.mit.edu	36	14	72892125	72892125	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005744	exon4	c.G88T	p.E30X	.	.	.
FAM161B	145483	broad.mit.edu	36	14	73481005	73481005	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152445	exon3	c.C711T	p.S237S	.	.	.
C14orf45	80127	broad.mit.edu	36	14	73559454	73559454	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025057	exon2	c.G139A	p.E47K	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74039342	74039342	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000428	exon34	c.A4937C	p.E1646A	.	.	.
LTBP2	4053	broad.mit.edu	36	14	74047773	74047773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000428	exon19	c.G2956A	p.V986I	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74314963	74314963	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019589	exon2	c.C934A	p.H312N	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74335243	74335243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019589	exon5	c.C3490T	p.R1164C	.	.	.
YLPM1	56252	broad.mit.edu	36	14	74346722	74346722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019589	exon9	c.C5074T	p.R1692C	.	.	.
MLH3	27030	broad.mit.edu	36	14	74585077	74585077	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040108	exon2	c.A1035C	p.K345N	.	.	.
FAM164C	79696	broad.mit.edu	36	14	74607894	74607894	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024643	exon2	c.G865T	p.E289X	.	.	.
NEK9	91754	broad.mit.edu	36	14	74646201	74646201	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033116	exon10	c.C1122A	p.V374V	.	.	.
C14orf118	55668	broad.mit.edu	36	14	75707974	75707974	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017926	exon4	c.G763T	p.E255X	.	.	.
C14orf166B	145497	broad.mit.edu	36	14	76367470	76367470	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194287	exon3	c.T389C	p.V130A	.	.	.
TMEM63C	57156	broad.mit.edu	36	14	76792790	76792790	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020431	exon24	c.C2389T	p.L797L	.	.	.
SAMD15	161394	broad.mit.edu	36	14	76914613	76914613	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010860	exon1	c.T1099G	p.S367A	.	.	.
SAMD15	161394	broad.mit.edu	36	14	76915086	76915086	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010860	exon1	c.C1572A	p.V524V	.	.	.
C14orf148	122945	broad.mit.edu	36	14	76930862	76930862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113475	exon6	c.G945T	p.K315N	.	.	.
SPTLC2	9517	broad.mit.edu	36	14	77115184	77115184	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004863	exon3	c.G349T	p.D117Y	.	.	.
NRXN3	9369	broad.mit.edu	36	14	79233890	79233890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004796	exon15	c.C2662T	p.R888W	.	.	.
NRXN3	9369	broad.mit.edu	36	14	79234005	79234005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004796	exon15	c.G2777A	p.R926H	.	.	.
C14orf145	145508	broad.mit.edu	36	14	80321633	80321633	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152446	exon14	c.G1570T	p.E524X	.	.	.
TSHR	7253	broad.mit.edu	36	14	80679878	80679878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000369	exon10	c.G1723A	p.E575K	.	.	.
SEL1L	6400	broad.mit.edu	36	14	81035751	81035751	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005065	exon7	c.C786A	p.G262G	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85158647	85158647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013231	exon2	c.C1036T	p.R346W	.	.	.
PTPN21	11099	broad.mit.edu	36	14	88016423	88016423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007039	exon13	c.G1105A	p.G369R	.	.	.
EML5	161436	broad.mit.edu	36	14	88152286	88152286	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon42	c.T5850C	p.F1950F	.	.	.
EML5	161436	broad.mit.edu	36	14	88194399	88194399	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon26	c.T3762G	p.V1254V	.	.	.
EML5	161436	broad.mit.edu	36	14	88223356	88223356	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon19	c.G2811T	p.K937N	.	.	.
EML5	161436	broad.mit.edu	36	14	88276506	88276506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon5	c.G689A	p.R230Q	.	.	.
TTC8	123016	broad.mit.edu	36	14	88407647	88407647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198309	exon11	c.C1021T	p.R341W	.	.	.
C14orf102	55051	broad.mit.edu	36	14	89852739	89852739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017970	exon3	c.G343A	p.D115N	.	.	.
CALM1	801	broad.mit.edu	36	14	89940056	89940056	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006888	exon4	c.C276A	p.V92V	.	.	.
C14orf159	80017	broad.mit.edu	36	14	90696461	90696461	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024952	exon3	c.C70T	p.P24S	.	.	.
CATSPERB	79820	broad.mit.edu	36	14	91124115	91124115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024764	exon25	c.C3017T	p.A1006V	.	.	.
TC2N	123036	broad.mit.edu	36	14	91323679	91323679	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152332	exon10	c.A1093C	p.N365H	.	.	.
TC2N	123036	broad.mit.edu	36	14	91338367	91338367	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152332	exon4	c.G453A	p.K151K	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91539908	91539908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon11	c.G4165A	p.E1389K	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91541763	91541763	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon11	c.G2310T	p.K770N	.	.	.
ATXN3	4287	broad.mit.edu	36	14	91632784	91632784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127696	exon2	c.G176A	p.R59H	.	.	.
SLC24A4	123041	broad.mit.edu	36	14	91979559	91979559	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153648	exon7	c.C453T	p.I151I	.	.	.
ITPK1	3705	broad.mit.edu	36	14	92552818	92552818	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142593	exon4	c.G202A	p.D68N	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92784625	92784625	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002860	exon9	c.C2071T	p.R691X	.	.	.
BTBD7	55727	broad.mit.edu	36	14	92799948	92799948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002860	exon4	c.C1307T	p.S436L	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93074182	93074182	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon12	c.G686T	p.R229M	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93129808	93129808	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon23	c.C2531T	p.S844F	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93157795	93157795	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon30	c.G3932T	p.S1311I	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93177323	93177323	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon34	c.G5466T	p.E1822D	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93191350	93191350	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon39	c.G5886T	p.K1962N	.	.	.
KIAA1409	57578	broad.mit.edu	36	14	93224814	93224814	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020818	exon45	c.A6546G	p.G2182G	.	.	.
DDX24	57062	broad.mit.edu	36	14	93598307	93598307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020414	exon3	c.G1132A	p.A378T	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93801509	93801509	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058237	exon21	c.C2230A	p.P744T	.	.	.
SERPINA11	256394	broad.mit.edu	36	14	93984347	93984347	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080451	exon2	c.C518A	p.S173Y	.	.	.
SERPINA11	256394	broad.mit.edu	36	14	93984540	93984540	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080451	exon2	c.G325T	p.E109X	.	.	.
SERPINA12	145264	broad.mit.edu	36	14	94032492	94032492	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173850	exon4	c.C876A	p.F292L	.	.	.
SERPINA12	145264	broad.mit.edu	36	14	94032619	94032619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173850	exon4	c.G749A	p.G250D	.	.	.
SERPINA12	145264	broad.mit.edu	36	14	94034023	94034023	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173850	exon3	c.G465T	p.K155N	.	.	.
DICER1	23405	broad.mit.edu	36	14	94626691	94626691	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177438	exon27	c.A5666C	p.K1889T	.	.	.
DICER1	23405	broad.mit.edu	36	14	94643770	94643770	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177438	exon17	c.G2732T	p.S911I	.	.	.
CLMN	79789	broad.mit.edu	36	14	94746933	94746933	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024734	exon7	c.G645A	p.W215X	.	.	.
ATG2B	55102	broad.mit.edu	36	14	95847667	95847667	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018036	exon27	c.A3955G	p.I1319V	.	.	.
AK7	122481	broad.mit.edu	36	14	95956944	95956944	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152327	exon5	c.T531G	p.D177E	.	.	.
EML1	2009	broad.mit.edu	36	14	99434379	99434379	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008707	exon9	c.C941T	p.S314L	.	.	.
EML1	2009	broad.mit.edu	36	14	99473920	99473920	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008707	exon21	c.C2166A	p.A722A	.	.	.
EVL	51466	broad.mit.edu	36	14	99673691	99673691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016337	exon10	c.C988T	p.R330W	.	.	.
SNORD113-5	767565	broad.mit.edu	36	14	100472605	100472605	+	5'Flank	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MIR369	442914	broad.mit.edu	36	14	100601559	100601559	+	5'Flank	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	105162588	105162588	+	RNA	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	105712612	105712612	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	105738630	105738630	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ADAM6	8755	broad.mit.edu	36	14	105916628	105916628	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SUPT16H	11198	broad.mit.edu	36	14	20901025	20901025	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CHD8	57680	broad.mit.edu	36	14	20932203	20932203	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	21306630	21306630	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	21379760	21379760	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	21391000	21391000	+	IGR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	21426420	21426420	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	21650769	21650769	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	21852752	21852752	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	22001879	22001879	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	22005250	22005250	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	22074404	22074404	+	IGR	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	22090392	22090392	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYH6	4624	broad.mit.edu	36	14	22946061	22946061	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AKAP6	9472	broad.mit.edu	36	14	31972442	31972442	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SNX6	58533	broad.mit.edu	36	14	34106981	34106981	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PSMA6	5687	broad.mit.edu	36	14	34853307	34853307	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	14	37381117	37381117	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46394111	46394111	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C14orf104	55172	broad.mit.edu	36	14	49164479	49164479	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDKL1	8814	broad.mit.edu	36	14	49933583	49933583	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50516029	50516029	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DDHD1	80821	broad.mit.edu	36	14	52628245	52628245	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DLGAP5	9787	broad.mit.edu	36	14	54684950	54684950	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C14orf135	64430	broad.mit.edu	36	14	59644780	59644780	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MED6	10001	broad.mit.edu	36	14	70129468	70129468	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RGS6	9628	broad.mit.edu	36	14	71994845	71994845	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RGS6	9628	broad.mit.edu	36	14	72054800	72054800	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SEL1L	6400	broad.mit.edu	36	14	81034597	81034597	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EML5	161436	broad.mit.edu	36	14	88151958	88151958	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C14orf48	256369	broad.mit.edu	36	14	93537345	93537345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SERPINA10	51156	broad.mit.edu	36	14	93820252	93820252	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CYP46A1	10858	broad.mit.edu	36	14	99261477	99261477	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TARSL2	123283	broad.mit.edu	36	15	100014684	100014684	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152334	exon18	c.C2224T	p.R742X	.	.	.
OR4M2	390538	broad.mit.edu	36	15	19870639	19870639	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004719	exon1	c.A700G	p.N234D	.	.	.
OR4N4	283694	broad.mit.edu	36	15	19884500	19884500	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005241	exon1	c.C664A	p.L222I	.	.	.
MKRN3	7681	broad.mit.edu	36	15	21363065	21363065	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005664	exon1	c.G1043T	p.R348I	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22473835	22473835	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018958	exon1	c.T1728G	p.V576V	.	.	.
SNURF	8926	broad.mit.edu	36	15	22764259	22764259	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022804	exon3	c.G198T	p.E66D	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23171855	23171855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000462	exon3	c.G220A	p.E74K	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23510009	23510009	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024490	exon10	c.C2249A	p.S750X	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23522191	23522191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon5	c.G979A	p.G327R	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23577454	23577454	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon2	c.G459A	p.K153K	.	.	.
GABRA5	2558	broad.mit.edu	36	15	24679628	24679628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165037	exon6	c.C328T	p.R110W	.	.	.
OCA2	4948	broad.mit.edu	36	15	25943641	25943641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000275	exon5	c.G518A	p.R173H	.	.	.
HERC2	8924	broad.mit.edu	36	15	26120253	26120253	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon48	c.C7660T	p.R2554X	.	.	.
HERC2	8924	broad.mit.edu	36	15	26181731	26181731	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon15	c.G2050T	p.G684C	.	.	.
HERC2	8924	broad.mit.edu	36	15	26193040	26193040	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon7	c.C792T	p.V264V	.	.	.
MTMR10	54893	broad.mit.edu	36	15	29038565	29038565	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017762	exon8	c.G810T	p.K270N	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29081546	29081546	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon27	c.G4583T	p.R1528I	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29117307	29117307	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002420	exon19	c.G2404A	p.G802R	.	.	.
ARHGAP11A	9824	broad.mit.edu	36	15	30703030	30703030	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199357	exon3	c.C246T	p.T82T	.	.	.
FMN1	342184	broad.mit.edu	36	15	30878312	30878312	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103184	exon15	c.A3446C	p.N1149T	.	.	.
RYR3	6263	broad.mit.edu	36	15	31811108	31811108	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon48	c.A7345C	p.I2449L	.	.	.
RYR3	6263	broad.mit.edu	36	15	31906188	31906188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon84	c.G11188A	p.E3730K	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32338434	32338434	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042497	exon3	c.G370T	p.E124X	.	.	.
SLC12A6	9990	broad.mit.edu	36	15	32416103	32416103	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042497	exon1	c.A71C	p.D24A	.	.	.
C15orf55	256646	broad.mit.edu	36	15	32427626	32427626	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175741	exon2	c.C181T	p.L61L	.	.	.
AQR	9716	broad.mit.edu	36	15	32983900	32983900	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014691	exon19	c.A1930C	p.N644H	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33061024	33061024	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014106	exon3	c.G1904A	p.R635Q	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33061607	33061607	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014106	exon3	c.T1321C	p.S441P	.	.	.
ZNF770	54989	broad.mit.edu	36	15	33062335	33062335	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014106	exon3	c.G593A	p.R198Q	.	.	.
TMCO5A	145942	broad.mit.edu	36	15	36016363	36016363	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152453	exon3	c.C164T	p.T55M	.	.	.
SPRED1	161742	broad.mit.edu	36	15	36378943	36378943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152594	exon2	c.G110A	p.S37N	.	.	.
SPRED1	161742	broad.mit.edu	36	15	36419236	36419236	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152594	exon5	c.G430T	p.E144X	.	.	.
THBS1	7057	broad.mit.edu	36	15	37668453	37668453	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon11	c.T1647C	p.D549D	.	.	.
THBS1	7057	broad.mit.edu	36	15	37668823	37668823	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon12	c.C1902T	p.V634V	.	.	.
THBS1	7057	broad.mit.edu	36	15	37669309	37669309	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon13	c.C1938T	p.P646P	.	.	.
BMF	90427	broad.mit.edu	36	15	38171368	38171368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033503	exon4	c.A467G	p.Q156R	.	.	.
CASC5	57082	broad.mit.edu	36	15	38698463	38698463	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon10	c.C415A	p.L139I	.	.	.
CASC5	57082	broad.mit.edu	36	15	38700758	38700758	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon11	c.A1082C	p.N361T	.	.	.
CASC5	57082	broad.mit.edu	36	15	38704037	38704037	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon11	c.A4361G	p.D1454G	.	.	.
CASC5	57082	broad.mit.edu	36	15	38708798	38708798	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170589	exon14	c.C5697A	p.F1899L	.	.	.
DNAJC17	55192	broad.mit.edu	36	15	38853914	38853914	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018163	exon9	c.C613A	p.L205I	.	.	.
VPS18	57617	broad.mit.edu	36	15	38978680	38978680	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020857	exon4	c.G372T	p.V124V	.	.	.
INO80	54617	broad.mit.edu	36	15	39077082	39077082	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017553	exon29	c.C3507A	p.I1169I	.	.	.
TYRO3	7301	broad.mit.edu	36	15	39657440	39657440	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006293	exon19	c.C2347T	p.R783X	.	.	.
MGA	23269	broad.mit.edu	36	15	39749206	39749206	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080541	exon2	c.G822T	p.K274N	.	.	.
MGA	23269	broad.mit.edu	36	15	39815984	39815984	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080541	exon13	c.G4230T	p.E1410D	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39903454	39903454	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014994	exon29	c.C4116A	p.L1372L	.	.	.
JMJD7-PLA2G4B	8681	broad.mit.edu	36	15	39925223	39925223	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114633	exon15	c.C1453A	p.L485M	.	.	.
EHD4	30844	broad.mit.edu	36	15	39980634	39980634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139265	exon6	c.C1127T	p.S376L	.	.	.
VPS39	23339	broad.mit.edu	36	15	40253232	40253232	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015289	exon11	c.C1071A	p.V357V	.	.	.
CAPN3	825	broad.mit.edu	36	15	40439305	40439305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173087	exon1	c.G10A	p.V4I	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40497381	40497381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022473	exon18	c.G5509A	p.D1837N	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40526088	40526088	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022473	exon4	c.G3127T	p.G1043X	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40529642	40529642	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022473	exon2	c.A2051C	p.K684T	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40825739	40825739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173500	exon15	c.G3281T	p.R1094I	.	.	.
TGM5	9333	broad.mit.edu	36	15	41318347	41318347	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004245	exon8	c.C1059T	p.D353D	.	.	.
TGM7	116179	broad.mit.edu	36	15	41359240	41359240	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052955	exon10	c.G1553A	p.S518N	.	.	.
LCMT2	9836	broad.mit.edu	36	15	41408077	41408077	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014793	exon1	c.C1903T	p.P635S	.	.	.
TUBGCP4	27229	broad.mit.edu	36	15	41465803	41465803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014444	exon9	c.C997T	p.R333C	.	.	.
TUBGCP4	27229	broad.mit.edu	36	15	41479568	41479568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014444	exon14	c.C1453T	p.R485C	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41495850	41495850	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005657	exon22	c.G4723T	p.E1575X	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41560424	41560424	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005657	exon5	c.G445T	p.D149Y	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41603760	41603760	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002373	exon4	c.T2797C	p.S933P	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41604584	41604584	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002373	exon4	c.G3621A	p.E1207E	.	.	.
MAP1A	4130	broad.mit.edu	36	15	41606788	41606788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002373	exon4	c.C5825T	p.A1942V	.	.	.
PPIP5K1	9677	broad.mit.edu	36	15	41619049	41619049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130859	exon28	c.G3335A	p.S1112N	.	.	.
ELL3	80237	broad.mit.edu	36	15	41855256	41855256	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025165	exon4	c.T439C	p.S147P	.	.	.
ELL3	80237	broad.mit.edu	36	15	41855411	41855411	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025165	exon4	c.C284A	p.S95Y	.	.	.
FRMD5	84978	broad.mit.edu	36	15	41953598	41953598	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032892	exon14	c.T1490G	p.F497C	.	.	.
CASC4	113201	broad.mit.edu	36	15	42417258	42417258	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177974	exon5	c.G582T	p.E194D	.	.	.
SPG11	80208	broad.mit.edu	36	15	42680074	42680074	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160227	exon21	c.A3569G	p.K1190R	.	.	.
B2M	567	broad.mit.edu	36	15	42795821	42795821	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004048	exon3	c.C349T	p.R117X	.	.	.
TRIM69	140691	broad.mit.edu	36	15	42847051	42847051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182985	exon7	c.C1292T	p.S431F	.	.	.
DUOX2	50506	broad.mit.edu	36	15	43183464	43183464	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014080	exon20	c.C2640A	p.F880L	.	.	.
DUOXA2	405753	broad.mit.edu	36	15	43195705	43195705	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207581	exon3	c.C297T	p.V99V	.	.	.
DUOXA1	90527	broad.mit.edu	36	15	43197555	43197555	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144565	exon10	c.C996T	p.R332R	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43231783	43231783	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017434	exon26	c.C3201A	p.A1067A	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43235361	43235361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017434	exon29	c.G3644A	p.R1215H	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43244280	43244280	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017434	exon35	c.C4545T	p.I1515I	.	.	.
GATM	2628	broad.mit.edu	36	15	43441644	43441644	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001482	exon9	c.C1227T	p.T409T	.	.	.
SPATA5L1	79029	broad.mit.edu	36	15	43495089	43495089	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024063	exon5	c.G1657C	p.A553P	.	.	.
PLDN	26258	broad.mit.edu	36	15	43682629	43682629	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012388	exon3	c.G264T	p.E88D	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45843413	45843413	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153619	exon10	c.G822T	p.W274C	.	.	.
MYEF2	50804	broad.mit.edu	36	15	46222483	46222483	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016132	exon17	c.G1717T	p.E573X	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46287412	46287412	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184832	exon2	c.G204T	p.E68D	.	.	.
SLC12A1	6557	broad.mit.edu	36	15	46309892	46309892	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184832	exon7	c.C875T	p.S292L	.	.	.
FBN1	2200	broad.mit.edu	36	15	46524961	46524961	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon48	c.C5821A	p.L1941I	.	.	.
FBN1	2200	broad.mit.edu	36	15	46542670	46542670	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000138	exon42	c.G5125T	p.E1709X	.	.	.
CEP152	22995	broad.mit.edu	36	15	46821578	46821578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194998	exon25	c.C3847T	p.R1283C	.	.	.
CEP152	22995	broad.mit.edu	36	15	46841913	46841913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194998	exon18	c.G2529T	p.L843F	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47097047	47097047	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014701	exon8	c.C1106A	p.S369Y	.	.	.
GABPB1	2553	broad.mit.edu	36	15	48365595	48365595	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002041	exon8	c.G997A	p.E333K	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48641181	48641181	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017672	exon39	c.C5584T	p.R1862C	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48692277	48692277	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017672	exon16	c.A1812C	p.K604N	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49008514	49008514	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007347	exon6	c.A559T	p.K187X	.	.	.
AP4E1	23431	broad.mit.edu	36	15	49021016	49021016	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007347	exon9	c.A1029C	p.K343N	.	.	.
CYP19A1	1588	broad.mit.edu	36	15	49322300	49322300	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031226	exon3	c.T102C	p.L34L	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49538055	49538055	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon35	c.C8072A	p.S2691Y	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49553908	49553908	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon28	c.C7135T	p.R2379X	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49579418	49579418	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon18	c.G3295T	p.E1099X	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49626740	49626740	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon7	c.A725C	p.K242T	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49647996	49647996	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon3	c.A265C	p.N89H	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50349269	50349269	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018728	exon8	c.G913T	p.E305X	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50468797	50468797	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000259	exon13	c.A1598G	p.N533S	.	.	.
KIAA1370	56204	broad.mit.edu	36	15	50690626	50690626	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019600	exon5	c.C523A	p.L175I	.	.	.
WDR72	256764	broad.mit.edu	36	15	51695241	51695241	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182758	exon15	c.C2454T	p.H818H	.	.	.
WDR72	256764	broad.mit.edu	36	15	51802320	51802320	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182758	exon3	c.G231A	p.Q77Q	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52093223	52093223	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon1	c.C831A	p.I277I	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52095319	52095319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon1	c.C2927T	p.A976V	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52329803	52329803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon6	c.C3317T	p.T1106I	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52413346	52413346	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon14	c.G4584T	p.K1528N	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52612518	52612518	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon24	c.G5658T	p.E1886D	.	.	.
RAB27A	5873	broad.mit.edu	36	15	53285143	53285143	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004580	exon6	c.A520C	p.I174L	.	.	.
CCPG1	9236	broad.mit.edu	36	15	53439237	53439237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020739	exon8	c.G2026A	p.E676K	.	.	.
PRTG	283659	broad.mit.edu	36	15	53819908	53819908	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173814	exon2	c.G361A	p.A121T	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53927883	53927883	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006154	exon17	c.G1521T	p.E507D	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53942444	53942444	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006154	exon9	c.C633A	p.N211K	.	.	.
RFX7	64864	broad.mit.edu	36	15	54175674	54175674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022841	exon9	c.C1544T	p.S515F	.	.	.
MNS1	55329	broad.mit.edu	36	15	54522967	54522967	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018365	exon7	c.G964T	p.E322X	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55518516	55518516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032866	exon2	c.C1027T	p.R343W	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55596422	55596422	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032866	exon9	c.C2556T	p.I852I	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55719016	55719016	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152451	exon10	c.T1100G	p.V367G	.	.	.
GCOM1	145781	broad.mit.edu	36	15	55794146	55794146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018102	exon4	c.G613A	p.D205N	.	.	.
ALDH1A2	8854	broad.mit.edu	36	15	56093447	56093447	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170696	exon3	c.C264A	p.F88L	.	.	.
AQP9	366	broad.mit.edu	36	15	56246203	56246203	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020980	exon2	c.C151T	p.R51X	.	.	.
AQP9	366	broad.mit.edu	36	15	56263478	56263478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020980	exon6	c.C740A	p.P247H	.	.	.
LIPC	3990	broad.mit.edu	36	15	56622120	56622120	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000236	exon4	c.G552A	p.T184T	.	.	.
SLTM	79811	broad.mit.edu	36	15	56969783	56969783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024755	exon15	c.C2068T	p.R690C	.	.	.
SLTM	79811	broad.mit.edu	36	15	56973464	56973464	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024755	exon12	c.T1496C	p.V499A	.	.	.
FAM81A	145773	broad.mit.edu	36	15	57588358	57588358	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152450	exon6	c.C548A	p.S183Y	.	.	.
GCNT3	9245	broad.mit.edu	36	15	57698687	57698687	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004751	exon3	c.G958T	p.E320X	.	.	.
RORA	6095	broad.mit.edu	36	15	58583038	58583038	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134261	exon7	c.C1063A	p.L355I	.	.	.
VPS13C	54832	broad.mit.edu	36	15	59960387	59960387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017684	exon70	c.G9706A	p.A3236T	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60038189	60038189	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017684	exon35	c.G3946T	p.D1316Y	.	.	.
USP3	9960	broad.mit.edu	36	15	61653377	61653377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006537	exon10	c.G988A	p.E330K	.	.	.
USP3	9960	broad.mit.edu	36	15	61668050	61668050	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006537	exon13	c.A1312G	p.K438E	.	.	.
HERC1	8925	broad.mit.edu	36	15	61741046	61741046	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon45	c.C9129A	p.Y3043X	.	.	.
HERC1	8925	broad.mit.edu	36	15	61828965	61828965	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon9	c.G1981T	p.E661X	.	.	.
SNX1	6642	broad.mit.edu	36	15	62191871	62191871	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148955	exon2	c.A206T	p.N69I	.	.	.
SNX22	79856	broad.mit.edu	36	15	62232569	62232569	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024798	exon4	c.G337T	p.D113Y	.	.	.
CSNK1G1	53944	broad.mit.edu	36	15	62286790	62286790	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022048	exon7	c.C736T	p.R246X	.	.	.
TRIP4	9325	broad.mit.edu	36	15	62480029	62480029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016213	exon5	c.G653A	p.R218H	.	.	.
CILP	8483	broad.mit.edu	36	15	63277004	63277004	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003613	exon9	c.G2673A	p.G891G	.	.	.
CILP	8483	broad.mit.edu	36	15	63283724	63283724	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003613	exon6	c.T854G	p.I285S	.	.	.
DPP8	54878	broad.mit.edu	36	15	63535633	63535633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197961	exon17	c.G2149A	p.A717T	.	.	.
DPP8	54878	broad.mit.edu	36	15	63558297	63558297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197961	exon12	c.G1478A	p.R493Q	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63831789	63831789	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon4	c.G543T	p.K181N	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64398002	64398002	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133375	exon8	c.A907G	p.T303A	.	.	.
ZWILCH	55055	broad.mit.edu	36	15	64593455	64593455	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017975	exon3	c.G181T	p.V61L	.	.	.
LCTL	197021	broad.mit.edu	36	15	64627886	64627886	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207338	exon13	c.G1700A	p.S567N	.	.	.
LCTL	197021	broad.mit.edu	36	15	64642991	64642991	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207338	exon4	c.G397A	p.E133K	.	.	.
SMAD3	4088	broad.mit.edu	36	15	65269903	65269903	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145103	exon9	c.G1121T	p.S374I	.	.	.
AAGAB	79719	broad.mit.edu	36	15	65288923	65288923	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024666	exon6	c.C549A	p.G183G	.	.	.
AAGAB	79719	broad.mit.edu	36	15	65311278	65311278	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024666	exon5	c.G463T	p.E155X	.	.	.
ITGA11	22801	broad.mit.edu	36	15	66411318	66411318	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004439	exon14	c.A1703G	p.D568G	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66793395	66793395	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006091	exon6	c.C726A	p.V242V	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66793975	66793975	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006091	exon7	c.C789T	p.I263I	.	.	.
CORO2B	10391	broad.mit.edu	36	15	66798093	66798093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006091	exon9	c.G970A	p.V324I	.	.	.
SPESP1	246777	broad.mit.edu	36	15	67025544	67025544	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145658	exon2	c.C617A	p.T206N	.	.	.
GLCE	26035	broad.mit.edu	36	15	67340669	67340669	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015554	exon4	c.C776T	p.A259V	.	.	.
PAQR5	54852	broad.mit.edu	36	15	67476888	67476888	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001104554	exon7	c.C540A	p.L180L	.	.	.
UACA	55075	broad.mit.edu	36	15	68748214	68748214	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018003	exon16	c.G1863A	p.A621A	.	.	.
LRRC49	54839	broad.mit.edu	36	15	69059506	69059506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199018	exon11	c.C802T	p.R268C	.	.	.
LRRC49	54839	broad.mit.edu	36	15	69089266	69089266	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199018	exon14	c.C1342T	p.R448C	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69906338	69906338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon42	c.C7284T	p.V2428V	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69977477	69977477	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon25	c.T4421G	p.I1474S	.	.	.
TMEM202	338949	broad.mit.edu	36	15	70478182	70478182	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080462	exon2	c.C216T	p.I72I	.	.	.
HCN4	10021	broad.mit.edu	36	15	71408983	71408983	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005477	exon4	c.G1574A	p.R525H	.	.	.
PML	5371	broad.mit.edu	36	15	72077469	72077469	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033238	exon2	c.G201A	p.P67P	.	.	.
ISLR	3671	broad.mit.edu	36	15	72254352	72254352	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201526	exon2	c.G100A	p.A34T	.	.	.
ISLR	3671	broad.mit.edu	36	15	72254546	72254546	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201526	exon2	c.C294A	p.S98R	.	.	.
EDC3	80153	broad.mit.edu	36	15	72751165	72751165	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025083	exon3	c.A168T	p.A56A	.	.	.
C15orf39	56905	broad.mit.edu	36	15	73285730	73285730	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015492	exon2	c.G288A	p.S96S	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73455071	73455071	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145358	exon20	c.C3579T	p.L1193L	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73474096	73474096	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145358	exon14	c.A2255T	p.E752V	.	.	.
SIN3A	25942	broad.mit.edu	36	15	73481331	73481331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145358	exon10	c.G1441A	p.E481K	.	.	.
PTPN9	5780	broad.mit.edu	36	15	73553106	73553106	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002833	exon10	c.C1185A	p.V395V	.	.	.
SNX33	257364	broad.mit.edu	36	15	73729644	73729644	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153271	exon1	c.G1146T	p.K382N	.	.	.
FBXO22	26263	broad.mit.edu	36	15	73996770	73996770	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012170	exon5	c.G608T	p.R203I	.	.	.
FBXO22	26263	broad.mit.edu	36	15	74012269	74012269	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147188	exon7	c.G983T	p.G328V	.	.	.
ETFA	2108	broad.mit.edu	36	15	74372087	74372087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127716	exon2	c.G49T	p.D17Y	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74513637	74513637	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145923	exon26	c.A2410G	p.T804A	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74851170	74851170	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145923	exon10	c.G478T	p.E160X	.	.	.
SCAPER	49855	broad.mit.edu	36	15	74941815	74941815	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020843	exon2	c.G121T	p.D41Y	.	.	.
RCN2	5955	broad.mit.edu	36	15	75028529	75028529	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002902	exon7	c.C865A	p.L289M	.	.	.
HMG20A	10363	broad.mit.edu	36	15	75557011	75557011	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018200	exon8	c.C675A	p.F225L	.	.	.
LINGO1	84894	broad.mit.edu	36	15	75694656	75694656	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032808	exon2	c.C648T	p.G216G	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76259025	76259025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199377	exon10	c.G1394A	p.R465H	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76262167	76262167	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199377	exon6	c.C667T	p.P223S	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76313801	76313801	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199377	exon1	c.T98A	p.I33N	.	.	.
IREB2	3658	broad.mit.edu	36	15	76542463	76542463	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004136	exon3	c.G251A	p.R84H	.	.	.
CHRNA5	1138	broad.mit.edu	36	15	76667782	76667782	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000745	exon4	c.A375C	p.S125S	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77535667	77535667	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015206	exon2	c.G123A	p.S41S	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77536711	77536711	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015206	exon2	c.C1167T	p.S389S	.	.	.
BCL2A1	597	broad.mit.edu	36	15	78050106	78050106	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004049	exon1	c.C411T	p.N137N	.	.	.
FAH	2184	broad.mit.edu	36	15	78254472	78254472	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000137	exon10	c.C897A	p.L299L	.	.	.
C15orf26	161502	broad.mit.edu	36	15	79214704	79214704	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173528	exon2	c.G108A	p.G36G	.	.	.
C15orf26	161502	broad.mit.edu	36	15	79227316	79227316	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173528	exon6	c.T699C	p.H233H	.	.	.
STARD5	80765	broad.mit.edu	36	15	79397822	79397822	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181900	exon5	c.C477T	p.F159F	.	.	.
TMC3	342125	broad.mit.edu	36	15	79423315	79423315	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080532	exon14	c.T1645G	p.F549V	.	.	.
EFTUD1	79631	broad.mit.edu	36	15	80231354	80231354	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024580	exon18	c.G2496A	p.G832G	.	.	.
FAM154B	283726	broad.mit.edu	36	15	80362292	80362292	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008226	exon3	c.C1031A	p.S344Y	.	.	.
CPEB1	64506	broad.mit.edu	36	15	81015377	81015377	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079535	exon7	c.C1062T	p.V354V	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81292633	81292633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080435	exon8	c.G1622A	p.R541Q	.	.	.
BNC1	646	broad.mit.edu	36	15	81717266	81717266	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon5	c.C2917T	p.R973X	.	.	.
BNC1	646	broad.mit.edu	36	15	81722812	81722812	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon4	c.C2195A	p.A732D	.	.	.
BNC1	646	broad.mit.edu	36	15	81723153	81723153	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon4	c.T1854A	p.S618R	.	.	.
BNC1	646	broad.mit.edu	36	15	81723362	81723362	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001717	exon4	c.G1645T	p.E549X	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	82028321	82028321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003027	exon4	c.C224T	p.S75L	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82496711	82496711	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon29	c.C4937A	p.S1646Y	.	.	.
WDR73	84942	broad.mit.edu	36	15	82990533	82990533	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032856	exon6	c.C403A	p.L135I	.	.	.
SLC28A1	9154	broad.mit.edu	36	15	83239643	83239643	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201651	exon7	c.G492A	p.P164P	.	.	.
PDE8A	5151	broad.mit.edu	36	15	83470530	83470530	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002605	exon20	c.C2174T	p.A725V	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84026418	84026418	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006738	exon15	c.C5139A	p.F1713L	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86471456	86471456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007156	exon11	c.G1234A	p.E412K	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86480840	86480840	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007156	exon7	c.T627C	p.L209L	.	.	.
MRPL46	26589	broad.mit.edu	36	15	86809968	86809968	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022163	exon2	c.G269A	p.R90H	.	.	.
ACAN	176	broad.mit.edu	36	15	87201979	87201979	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135	exon12	c.C5159A	p.S1720Y	.	.	.
MFGE8	4240	broad.mit.edu	36	15	87250893	87250893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005928	exon4	c.G508A	p.D170N	.	.	.
POLG	5428	broad.mit.edu	36	15	87661056	87661056	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126131	exon23	c.C3650T	p.A1217V	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87920354	87920354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon1	c.C533T	p.A178V	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87963967	87963967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon18	c.G3044A	p.R1015Q	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87968371	87968371	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon20	c.C3826T	p.R1276W	.	.	.
ANPEP	290	broad.mit.edu	36	15	88136489	88136489	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001150	exon18	c.G2434A	p.A812T	.	.	.
AP3S2	10239	broad.mit.edu	36	15	88252595	88252595	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182616	exon3	c.C222T	p.F74F	.	.	.
ZNF710	374655	broad.mit.edu	36	15	88411414	88411414	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198526	exon2	c.T41C	p.V14A	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88797090	88797090	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003870	exon12	c.C1242T	p.P414P	.	.	.
BLM	641	broad.mit.edu	36	15	89107256	89107256	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000057	exon8	c.C1939A	p.L647I	.	.	.
ST8SIA2	8128	broad.mit.edu	36	15	90778590	90778590	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006011	exon3	c.A271G	p.T91A	.	.	.
C15orf32	145858	broad.mit.edu	36	15	90816746	90816746	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153040	exon1	c.C364A	p.L122I	.	.	.
CHD2	1106	broad.mit.edu	36	15	91337106	91337106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001271	exon28	c.G3469T	p.A1157S	.	.	.
FAM169B	283777	broad.mit.edu	36	15	96800467	96800467	+	Missense_Mutation	SNP	C	A	A	rs34036460	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182562	exon7	c.G495T	p.K165N	.	.	.
PGPEP1L	145814	broad.mit.edu	36	15	97331908	97331908	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102612	exon3	c.G24A	p.E8E	.	.	.
SYNM	23336	broad.mit.edu	36	15	97488882	97488882	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015286	exon4	c.G2793T	p.T931T	.	.	.
LYSMD4	145748	broad.mit.edu	36	15	98089108	98089108	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152449	exon4	c.G237T	p.Q79H	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98332153	98332153	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139057	exon22	c.C3265T	p.R1089C	.	.	.
LASS3	204219	broad.mit.edu	36	15	98830654	98830654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178842	exon10	c.G736A	p.E246K	.	.	.
LASS3	204219	broad.mit.edu	36	15	98837769	98837769	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178842	exon7	c.G413A	p.R138K	.	.	.
LINS	55180	broad.mit.edu	36	15	98927184	98927184	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040616	exon7	c.G2056T	p.E686X	.	.	.
LINS	55180	broad.mit.edu	36	15	98931968	98931968	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040616	exon5	c.A633C	p.E211D	.	.	.
LINS	55180	broad.mit.edu	36	15	98932743	98932743	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040616	exon4	c.C603A	p.I201I	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99369825	99369825	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon10	c.C1371A	p.F457L	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99415818	99415818	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon29	c.C4628T	p.S1543F	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99423415	99423415	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon32	c.C5250T	p.V1750V	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99535373	99535373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014918	exon3	c.C2152T	p.L718L	.	.	.
CHSY1	22856	broad.mit.edu	36	15	99535970	99535970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014918	exon3	c.C1555T	p.L519F	.	.	.
Unknown	0	broad.mit.edu	36	15	18903915	18903915	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POTEB	339010	broad.mit.edu	36	15	19307299	19307299	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	15	19967488	19967488	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	15	19984446	19984446	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SNORD116-4	100033416	broad.mit.edu	36	15	22879087	22879087	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SNORD116-4	100033416	broad.mit.edu	36	15	22890353	22890353	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SNORD116-4	100033416	broad.mit.edu	36	15	22897891	22897891	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PAR4	347745	broad.mit.edu	36	15	22993865	22993865	+	RNA	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SNORD115-43	100033817	broad.mit.edu	36	15	23043638	23043638	+	5'Flank	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23153143	23153143	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OCA2	4948	broad.mit.edu	36	15	25937305	25937305	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TRPM1	4308	broad.mit.edu	36	15	29146693	29146693	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LPCAT4	254531	broad.mit.edu	36	15	32443811	32443811	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AQR	9716	broad.mit.edu	36	15	32939654	32939654	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
BUB1B	701	broad.mit.edu	36	15	38281893	38281893	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TP53BP1	7158	broad.mit.edu	36	15	41554258	41554258	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC28A2	9153	broad.mit.edu	36	15	43347146	43347146	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SEMA6D	80031	broad.mit.edu	36	15	45849974	45849974	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CEP152	22995	broad.mit.edu	36	15	46877145	46877145	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CEP152	22995	broad.mit.edu	36	15	46885149	46885149	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SHC4	399694	broad.mit.edu	36	15	46970306	46970306	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GABPB1	2553	broad.mit.edu	36	15	48389174	48389174	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USP8	9101	broad.mit.edu	36	15	48563758	48563758	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48703796	48703796	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYO5C	55930	broad.mit.edu	36	15	50331013	50331013	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53910087	53910087	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TEX9	374618	broad.mit.edu	36	15	54444940	54444940	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USP3	9960	broad.mit.edu	36	15	61667687	61667687	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CLPX	10845	broad.mit.edu	36	15	63231933	63231933	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64408358	64408358	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TIPIN	54962	broad.mit.edu	36	15	64416585	64416585	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PKM2	5315	broad.mit.edu	36	15	70289066	70289066	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BBS4	585	broad.mit.edu	36	15	70814577	70814577	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TBC1D21	161514	broad.mit.edu	36	15	71960784	71960784	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IL16	3603	broad.mit.edu	36	15	79349056	79349056	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AP3B2	8120	broad.mit.edu	36	15	81132746	81132746	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SH3GL3	6457	broad.mit.edu	36	15	81950581	81950581	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AGBL1	123624	broad.mit.edu	36	15	85332333	85332333	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86284989	86284989	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86481801	86481801	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88800376	88800376	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97277418	97277418	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C15orf51	196968	broad.mit.edu	36	15	98158785	98158785	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CLEC16A	23274	broad.mit.edu	36	16	11179760	11179760	+	Silent	SNP	G	T	T	rs61744091	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015226	exon23	c.G2874T	p.T958T	.	.	.
TNP2	7142	broad.mit.edu	36	16	11270360	11270360	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005425	exon1	c.C261T	p.N87N	.	.	.
PRM1	5619	broad.mit.edu	36	16	11282548	11282548	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002761	exon1	c.C49T	p.R17C	.	.	.
TXNDC11	51061	broad.mit.edu	36	16	11680567	11680567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015914	exon12	c.G2862T	p.E954D	.	.	.
PARN	5073	broad.mit.edu	36	16	14484153	14484153	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002582	exon22	c.C1513T	p.R505W	.	.	.
RRN3	54700	broad.mit.edu	36	16	15087749	15087749	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018427	exon4	c.T316G	p.F106V	.	.	.
MYH11	4629	broad.mit.edu	36	16	15721012	15721012	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon36	c.C5034A	p.I1678I	.	.	.
MYH11	4629	broad.mit.edu	36	16	15757813	15757813	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon15	c.G1656A	p.T552T	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16057478	16057478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019862	exon12	c.G1502A	p.R501Q	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16069553	16069553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019862	exon13	c.G1717A	p.E573K	.	.	.
ABCC6	368	broad.mit.edu	36	16	16210177	16210177	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171	exon7	c.G703T	p.D235Y	.	.	.
SMG1	23049	broad.mit.edu	36	16	18748841	18748841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015092	exon53	c.G9041A	p.R3014Q	.	.	.
SMG1	23049	broad.mit.edu	36	16	18754857	18754857	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015092	exon48	c.G7956A	p.P2652P	.	.	.
CP110	9738	broad.mit.edu	36	16	19451255	19451255	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014711	exon4	c.G158T	p.R53I	.	.	.
RPS2	6187	broad.mit.edu	36	16	1953211	1953211	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002952	exon4	c.G315A	p.E105E	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19587986	19587986	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020314	exon27	c.A2492C	p.D831A	.	.	.
GPRC5B	51704	broad.mit.edu	36	16	19790745	19790745	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016235	exon2	c.C924T	p.F308F	.	.	.
UMOD	7369	broad.mit.edu	36	16	20260071	20260071	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003361	exon7	c.G1420T	p.G474C	.	.	.
PDILT	204474	broad.mit.edu	36	16	20303589	20303589	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174924	exon3	c.C288T	p.I96I	.	.	.
ACSM2B	348158	broad.mit.edu	36	16	20474208	20474208	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105069	exon4	c.G480A	p.G160G	.	.	.
ACSM1	116285	broad.mit.edu	36	16	20580644	20580644	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052956	exon6	c.G965A	p.R322Q	.	.	.
ERI2	112479	broad.mit.edu	36	16	20709736	20709736	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080663	exon9	c.C752T	p.S251L	.	.	.
ERI2	112479	broad.mit.edu	36	16	20718804	20718804	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080663	exon7	c.G619T	p.E207X	.	.	.
LOC81691	81691	broad.mit.edu	36	16	20735014	20735014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199053	exon5	c.G454A	p.D152N	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21023370	21023370	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon16	c.G2289A	p.Q763Q	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21059387	21059387	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon5	c.G667T	p.E223X	.	.	.
TMEM159	57146	broad.mit.edu	36	16	21092938	21092938	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020422	exon4	c.C372A	p.V124V	.	.	.
ZP2	7783	broad.mit.edu	36	16	21116328	21116328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon19	c.G2212A	p.E738K	.	.	.
ZP2	7783	broad.mit.edu	36	16	21120823	21120823	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon12	c.A1310G	p.Y437C	.	.	.
ZP2	7783	broad.mit.edu	36	16	21121037	21121037	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon11	c.C1176T	p.D392D	.	.	.
ZP2	7783	broad.mit.edu	36	16	21121952	21121952	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon10	c.C1094A	p.S365Y	.	.	.
ZP2	7783	broad.mit.edu	36	16	21125681	21125681	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003460	exon5	c.C462A	p.I154I	.	.	.
OTOA	146183	broad.mit.edu	36	16	21597861	21597861	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144672	exon3	c.G124T	p.E42X	.	.	.
OTOA	146183	broad.mit.edu	36	16	21649749	21649749	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144672	exon20	c.A2298T	p.T766T	.	.	.
OTOA	146183	broad.mit.edu	36	16	21655170	21655170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144672	exon21	c.C2389T	p.R797W	.	.	.
UQCRC2	7385	broad.mit.edu	36	16	21894998	21894998	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003366	exon12	c.G1057T	p.A353S	.	.	.
USP31	57478	broad.mit.edu	36	16	22987077	22987077	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020718	exon16	c.A3850C	p.N1284H	.	.	.
USP31	57478	broad.mit.edu	36	16	23021204	23021204	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020718	exon6	c.G1171A	p.D391N	.	.	.
GGA2	23062	broad.mit.edu	36	16	23405554	23405554	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015044	exon7	c.T638G	p.L213X	.	.	.
UBFD1	56061	broad.mit.edu	36	16	23489380	23489380	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019116	exon7	c.G898T	p.D300Y	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24133503	24133503	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002738	exon17	c.C1887T	p.F629F	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24280530	24280530	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006539	exon4	c.T793G	p.F265V	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24696050	24696050	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon5	c.G459T	p.Q153H	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24723555	24723555	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon13	c.A3866G	p.N1289S	.	.	.
SLC5A11	115584	broad.mit.edu	36	16	24829298	24829298	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052944	exon15	c.C1821G	p.S607R	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25159205	25159205	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012981	exon7	c.C2337T	p.V779V	.	.	.
Unknown	0	broad.mit.edu	36	16	26986145	26986145	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145545	exon1	c.C328T	p.R110W	.	.	.
PRSS27	83886	broad.mit.edu	36	16	2703577	2703577	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031948	exon5	c.A632G	p.D211G	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27416618	27416618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001520	exon14	c.C2191T	p.P731S	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2752047	2752047	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016333	exon11	c.C1517A	p.S506Y	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2759047	2759047	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016333	exon12	c.T7782C	p.R2594R	.	.	.
XPO6	23214	broad.mit.edu	36	16	28074903	28074903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015171	exon7	c.G1090A	p.D364N	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28798339	28798339	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173201	exon3	c.G153T	p.E51D	.	.	.
ATP2A1	487	broad.mit.edu	36	16	28821050	28821050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173201	exon17	c.C2366T	p.P789L	.	.	.
CD19	930	broad.mit.edu	36	16	28851806	28851806	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178098	exon3	c.C429T	p.G143G	.	.	.
ASPHD1	253982	broad.mit.edu	36	16	29820083	29820083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181718	exon1	c.G290A	p.R97H	.	.	.
ASPHD1	253982	broad.mit.edu	36	16	29820629	29820629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181718	exon1	c.G836A	p.R279Q	.	.	.
TAOK2	9344	broad.mit.edu	36	16	29902387	29902387	+	Silent	SNP	G	A	A	rs61739161	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004783	exon13	c.G1323A	p.P441P	.	.	.
HIRIP3	8479	broad.mit.edu	36	16	29913298	29913298	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003609	exon4	c.T669G	p.S223R	.	.	.
MAPK3	5595	broad.mit.edu	36	16	30036014	30036014	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002746	exon6	c.T869C	p.V290A	.	.	.
THOC6	79228	broad.mit.edu	36	16	3016525	3016525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024339	exon7	c.C419T	p.S140F	.	.	.
CD2BP2	10421	broad.mit.edu	36	16	30273104	30273104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006110	exon3	c.G119A	p.R40H	.	.	.
ITGAL	3683	broad.mit.edu	36	16	30440380	30440380	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114380	exon29	c.C3154A	p.P1052T	.	.	.
IL32	9235	broad.mit.edu	36	16	3059041	3059041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004221	exon7	c.G251A	p.G84D	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30643028	30643028	+	Missense_Mutation	SNP	G	T	T	rs9652695	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon25	c.G4782T	p.Q1594H	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30655213	30655213	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon32	c.A6921G	p.E2307E	.	.	.
PHKG2	5261	broad.mit.edu	36	16	30670043	30670043	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172432	exon3	c.C211T	p.R71W	.	.	.
RNF40	9810	broad.mit.edu	36	16	30682066	30682066	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014771	exon3	c.G259T	p.D87Y	.	.	.
RNF40	9810	broad.mit.edu	36	16	30684089	30684089	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014771	exon7	c.C858T	p.I286I	.	.	.
PRSS8	5652	broad.mit.edu	36	16	31051022	31051022	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002773	exon6	c.A841G	p.I281V	.	.	.
PRSS36	146547	broad.mit.edu	36	16	31058046	31058046	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173502	exon15	c.C2482A	p.L828I	.	.	.
ZNF205	7755	broad.mit.edu	36	16	3109812	3109812	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042428	exon7	c.C1150T	p.R384C	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31803394	31803394	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon2	c.G78T	p.K26N	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31833475	31833475	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon4	c.A404C	p.K135T	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31833710	31833710	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon4	c.G639T	p.E213D	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834014	31834014	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon4	c.A943C	p.I315L	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31834354	31834354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon4	c.G1283A	p.R428Q	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31835026	31835026	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003414	exon4	c.G1955T	p.R652I	.	.	.
MEFV	4210	broad.mit.edu	36	16	3237167	3237167	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000243	exon5	c.C1437A	p.F479L	.	.	.
AXIN1	8312	broad.mit.edu	36	16	336835	336835	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003502	exon2	c.G192A	p.S64S	.	.	.
NLRC3	197358	broad.mit.edu	36	16	3546965	3546965	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178844	exon8	c.G2131A	p.A711T	.	.	.
SLX4	84464	broad.mit.edu	36	16	3580649	3580649	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.G2991A	p.P997P	.	.	.
SLX4	84464	broad.mit.edu	36	16	3581201	3581201	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.G2439T	p.E813D	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3721828	3721828	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079846	exon28	c.T4726C	p.S1576P	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3729694	3729694	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079846	exon24	c.T4052C	p.F1351S	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3840827	3840827	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079846	exon2	c.C270T	p.S90S	.	.	.
VPS35	55737	broad.mit.edu	36	16	45260365	45260365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018206	exon13	c.G1625A	p.R542Q	.	.	.
C16orf87	388272	broad.mit.edu	36	16	45394406	45394406	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001436	exon4	c.G424T	p.E142X	.	.	.
PHKB	5257	broad.mit.edu	36	16	46088826	46088826	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001031835	exon3	c.C71A	p.P24H	.	.	.
PHKB	5257	broad.mit.edu	36	16	46257356	46257356	+	Missense_Mutation	SNP	C	T	T	rs17413450	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031835	exon26	c.C2318T	p.S773L	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46675461	46675461	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033226	exon28	c.G3853A	p.A1285T	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46702884	46702884	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033226	exon16	c.G2245T	p.E749X	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46732165	46732165	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033226	exon4	c.G591A	p.A197A	.	.	.
CBLN1	869	broad.mit.edu	36	16	47870971	47870971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004352	exon3	c.G427A	p.A143T	.	.	.
UBN1	29855	broad.mit.edu	36	16	4848612	4848612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016936	exon3	c.G379A	p.D127N	.	.	.
PPL	5493	broad.mit.edu	36	16	4875681	4875681	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002705	exon22	c.C2976T	p.Y992Y	.	.	.
CYLD	1540	broad.mit.edu	36	16	49341588	49341588	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015247	exon4	c.G478A	p.G160R	.	.	.
SALL1	6299	broad.mit.edu	36	16	49730650	49730650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.G2984A	p.R995Q	.	.	.
SALL1	6299	broad.mit.edu	36	16	49731399	49731399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.G2235A	p.T745T	.	.	.
SALL1	6299	broad.mit.edu	36	16	49732807	49732807	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.G827A	p.R276Q	.	.	.
SEC14L5	9717	broad.mit.edu	36	16	4998625	4998625	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014692	exon14	c.T1775C	p.V592A	.	.	.
FAM86A	196483	broad.mit.edu	36	16	5085471	5085471	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201400	exon2	c.C142T	p.R48W	.	.	.
CHD9	80205	broad.mit.edu	36	16	51817836	51817836	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025134	exon5	c.A1954C	p.K652Q	.	.	.
CHD9	80205	broad.mit.edu	36	16	51899198	51899198	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon33	c.C6885A	p.F2295L	.	.	.
CHD9	80205	broad.mit.edu	36	16	51909662	51909662	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025134	exon37	c.G7574T	p.R2525I	.	.	.
RBL2	5934	broad.mit.edu	36	16	52034078	52034078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005611	exon3	c.G379A	p.E127K	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52250205	52250205	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127897	exon11	c.C1330T	p.R444C	.	.	.
IRX6	79190	broad.mit.edu	36	16	53918782	53918782	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024335	exon3	c.C377T	p.P126L	.	.	.
LPCAT2	54947	broad.mit.edu	36	16	54170561	54170561	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017839	exon13	c.G1354T	p.E452X	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54248278	54248278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172504	exon1	c.G171A	p.E57E	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54291645	54291645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172504	exon12	c.G1684A	p.A562T	.	.	.
CES1	1066	broad.mit.edu	36	16	54401939	54401939	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025194	exon11	c.A1306C	p.N436H	.	.	.
CES5A	221223	broad.mit.edu	36	16	54437980	54437980	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143685	exon13	c.T1612G	p.F538V	.	.	.
CES5A	221223	broad.mit.edu	36	16	54441103	54441103	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143685	exon11	c.G1357A	p.D453N	.	.	.
CES5A	221223	broad.mit.edu	36	16	54451048	54451048	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143685	exon8	c.C968A	p.P323H	.	.	.
GNAO1	2775	broad.mit.edu	36	16	54942827	54942827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020988	exon7	c.G754A	p.D252N	.	.	.
NUDT21	11051	broad.mit.edu	36	16	55039322	55039322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007006	exon2	c.G197A	p.R66H	.	.	.
BBS2	583	broad.mit.edu	36	16	55094211	55094211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031885	exon8	c.G815A	p.R272Q	.	.	.
MT1B	4490	broad.mit.edu	36	16	55244474	55244474	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005947	exon3	c.C182G	p.A61G	.	.	.
CETP	1071	broad.mit.edu	36	16	55561057	55561057	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000078	exon4	c.C402T	p.I134I	.	.	.
CETP	1071	broad.mit.edu	36	16	55572606	55572606	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000078	exon12	c.G1182T	p.K394N	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55618368	55618368	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon6	c.G2012T	p.G671V	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55619791	55619791	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon8	c.G2236T	p.E746X	.	.	.
COQ9	57017	broad.mit.edu	36	16	56042592	56042592	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020312	exon2	c.T213C	p.P71P	.	.	.
GPR114	221188	broad.mit.edu	36	16	56159431	56159431	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153837	exon9	c.C984T	p.C328C	.	.	.
GPR114	221188	broad.mit.edu	36	16	56166855	56166855	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153837	exon12	c.C1491A	p.F497L	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57114802	57114802	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016284	exon47	c.C6890T	p.T2297M	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57117407	57117407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016284	exon45	c.G6590A	p.R2197H	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57125625	57125625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016284	exon40	c.G5822A	p.R1941Q	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57128617	57128617	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016284	exon39	c.A5423G	p.Q1808R	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57135109	57135109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon31	c.G4337A	p.R1446H	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57142588	57142588	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon24	c.G3291T	p.E1097D	.	.	.
CNOT1	23019	broad.mit.edu	36	16	57170341	57170341	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206999	exon13	c.G1347T	p.K449N	.	.	.
CMTM1	113540	broad.mit.edu	36	16	65170314	65170314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181271	exon3	c.G278T	p.R93I	.	.	.
CDH16	1014	broad.mit.edu	36	16	65507749	65507749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004062	exon4	c.G214A	p.D72N	.	.	.
CES3	23491	broad.mit.edu	36	16	65563823	65563823	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185177	exon11	c.A1355C	p.K452T	.	.	.
C16orf70	80262	broad.mit.edu	36	16	65722695	65722695	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025187	exon4	c.C237T	p.I79I	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65871629	65871629	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129727	exon3	c.C181A	p.L61I	.	.	.
PLEKHG4	25894	broad.mit.edu	36	16	65879308	65879308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129727	exon20	c.G3110A	p.R1037H	.	.	.
KCTD19	146212	broad.mit.edu	36	16	65890955	65890955	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100915	exon6	c.T798G	p.C266W	.	.	.
KCTD19	146212	broad.mit.edu	36	16	65912215	65912215	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100915	exon2	c.T78C	p.V26V	.	.	.
TPPP3	51673	broad.mit.edu	36	16	65981713	65981713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016140	exon5	c.G396A	p.T132T	.	.	.
CTCF	10664	broad.mit.edu	36	16	66208230	66208230	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006565	exon5	c.A1034G	p.H345R	.	.	.
C16orf48	84080	broad.mit.edu	36	16	66254599	66254599	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032140	exon7	c.C1007A	p.S336Y	.	.	.
THAP11	57215	broad.mit.edu	36	16	66434734	66434734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020457	exon1	c.G776A	p.R259H	.	.	.
NFATC3	4775	broad.mit.edu	36	16	66758296	66758296	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173163	exon5	c.C1651T	p.R551X	.	.	.
NFATC3	4775	broad.mit.edu	36	16	66782934	66782934	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173163	exon9	c.C2861A	p.S954Y	.	.	.
ESRP2	80004	broad.mit.edu	36	16	66823660	66823660	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024939	exon9	c.G987T	p.K329N	.	.	.
PRMT7	54496	broad.mit.edu	36	16	66916088	66916088	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019023	exon5	c.A134G	p.N45S	.	.	.
ZFP90	146198	broad.mit.edu	36	16	67154691	67154691	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133458	exon4	c.A500G	p.N167S	.	.	.
CDH3	1001	broad.mit.edu	36	16	67287309	67287309	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001793	exon15	c.C2262T	p.I754I	.	.	.
TMCO7	79613	broad.mit.edu	36	16	67472006	67472006	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024562	exon7	c.T1349A	p.L450H	.	.	.
HAS3	3038	broad.mit.edu	36	16	67705997	67705997	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005329	exon4	c.G989A	p.R330Q	.	.	.
CIRH1A	84916	broad.mit.edu	36	16	67742017	67742017	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032830	exon7	c.G815T	p.S272I	.	.	.
COG8	84342	broad.mit.edu	36	16	67926513	67926513	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032382	exon3	c.C825T	p.I275I	.	.	.
COG8	84342	broad.mit.edu	36	16	67928043	67928043	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032382	exon2	c.G451T	p.E151X	.	.	.
NIP7	51388	broad.mit.edu	36	16	67932602	67932602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016101	exon4	c.C301T	p.P101S	.	.	.
NFAT5	10725	broad.mit.edu	36	16	68261427	68261427	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138714	exon9	c.C1134A	p.S378R	.	.	.
NFAT5	10725	broad.mit.edu	36	16	68283861	68283861	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138714	exon14	c.T2350G	p.L784V	.	.	.
NFAT5	10725	broad.mit.edu	36	16	68284090	68284090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138714	exon14	c.C2579T	p.S860F	.	.	.
NFAT5	10725	broad.mit.edu	36	16	68285087	68285087	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138714	exon14	c.T3576G	p.I1192M	.	.	.
WWP2	11060	broad.mit.edu	36	16	68509279	68509279	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007014	exon11	c.C1171A	p.L391I	.	.	.
WWP2	11060	broad.mit.edu	36	16	68523257	68523257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199424	exon6	c.C328T	p.R110C	.	.	.
WWP2	11060	broad.mit.edu	36	16	68528987	68528987	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199424	exon11	c.C957T	p.S319S	.	.	.
PDPR	55066	broad.mit.edu	36	16	68730392	68730392	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017990	exon11	c.G1280A	p.R427H	.	.	.
AARS	16	broad.mit.edu	36	16	68850472	68850472	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001605	exon14	c.G1904T	p.R635I	.	.	.
DDX19B	11269	broad.mit.edu	36	16	68917047	68917047	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014449	exon5	c.T235A	p.F79I	.	.	.
DDX19A	55308	broad.mit.edu	36	16	68962801	68962801	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018332	exon11	c.C1209T	p.V403V	.	.	.
COG4	25839	broad.mit.edu	36	16	69099818	69099818	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015386	exon8	c.C1053T	p.I351I	.	.	.
SF3B3	23450	broad.mit.edu	36	16	69151931	69151931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012426	exon16	c.G2069A	p.R690H	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69424322	69424322	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon80	c.A13826G	p.Y4609C	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69457603	69457603	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon67	c.A11438G	p.E3813G	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69495151	69495151	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon52	c.C8724A	p.S2908R	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69512566	69512566	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon46	c.C7211A	p.S2404Y	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69530033	69530033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon44	c.G6977A	p.R2326H	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69546936	69546936	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon40	c.C6156T	p.A2052A	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69551221	69551221	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon39	c.A5969G	p.D1990G	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69565942	69565942	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon32	c.G4902T	p.E1634D	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69570338	69570338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon30	c.C4615T	p.P1539S	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69579361	69579361	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon27	c.C4158A	p.S1386S	.	.	.
CALB2	794	broad.mit.edu	36	16	69969130	69969130	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007088	exon4	c.C321T	p.G107G	.	.	.
ZNF19	7567	broad.mit.edu	36	16	70066905	70066905	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006961	exon6	c.G1046T	p.R349I	.	.	.
DHX38	9785	broad.mit.edu	36	16	70703822	70703822	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014003	exon27	c.G3609T	p.K1203N	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71551362	71551362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon2	c.G184A	p.A62T	.	.	.
GLG1	2734	broad.mit.edu	36	16	73048101	73048101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145666	exon24	c.G3286A	p.E1096K	.	.	.
WDR59	79726	broad.mit.edu	36	16	73481212	73481212	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030581	exon21	c.T2085G	p.V695V	.	.	.
ZFP1	162239	broad.mit.edu	36	16	73761046	73761046	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153688	exon4	c.C537A	p.N179K	.	.	.
ZFP1	162239	broad.mit.edu	36	16	73761120	73761120	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153688	exon4	c.G611T	p.R204I	.	.	.
ZFP1	162239	broad.mit.edu	36	16	73761372	73761372	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153688	exon4	c.G863T	p.R288I	.	.	.
CNTNAP4	85445	broad.mit.edu	36	16	75112668	75112668	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033401	exon16	c.G2495T	p.R832I	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75882766	75882766	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon21	c.G3300T	p.K1100N	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75947456	75947456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon9	c.G1342A	p.G448R	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75958975	75958975	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon4	c.C642A	p.Y214X	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	76022921	76022921	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon3	c.G267A	p.S89S	.	.	.
NUDT7	283927	broad.mit.edu	36	16	76333277	76333277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105663	exon4	c.C646A	p.L216I	.	.	.
VAT1L	57687	broad.mit.edu	36	16	76416655	76416655	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020927	exon3	c.T375G	p.R125R	.	.	.
CDYL2	124359	broad.mit.edu	36	16	79224628	79224628	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152342	exon3	c.C623A	p.A208D	.	.	.
CDYL2	124359	broad.mit.edu	36	16	79276142	79276142	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152342	exon2	c.A410G	p.Y137C	.	.	.
ATMIN	23300	broad.mit.edu	36	16	79634830	79634830	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015251	exon4	c.C1226A	p.S409Y	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79692310	79692310	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon43	c.G7298T	p.S2433I	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79708479	79708479	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon39	c.G6770A	p.R2257K	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79738518	79738518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon30	c.G5074A	p.A1692T	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79739345	79739345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon29	c.G4872T	p.K1624N	.	.	.
BCMO1	53630	broad.mit.edu	36	16	79881561	79881561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017429	exon11	c.G1522A	p.D508N	.	.	.
GAN	8139	broad.mit.edu	36	16	79968685	79968685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022041	exon11	c.C1777T	p.R593C	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80527434	80527434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002661	exon27	c.G3002A	p.R1001H	.	.	.
CDH13	1012	broad.mit.edu	36	16	81808592	81808592	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001257	exon5	c.G625A	p.A209T	.	.	.
CDH13	1012	broad.mit.edu	36	16	82077705	82077705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001257	exon7	c.G904A	p.D302N	.	.	.
KCNG4	93107	broad.mit.edu	36	16	82827898	82827898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172347	exon2	c.C695T	p.A232V	.	.	.
USP10	9100	broad.mit.edu	36	16	83351048	83351048	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005153	exon7	c.G1445T	p.R482L	.	.	.
FOXL1	2300	broad.mit.edu	36	16	85170153	85170153	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005250	exon1	c.T323C	p.V108A	.	.	.
C16orf68	79091	broad.mit.edu	36	16	8643861	8643861	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024109	exon9	c.G948A	p.T316T	.	.	.
ABAT	18	broad.mit.edu	36	16	8774262	8774262	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127448	exon12	c.A941G	p.D314G	.	.	.
ZNF778	197320	broad.mit.edu	36	16	87820691	87820691	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182531	exon6	c.G410T	p.R137I	.	.	.
SPG7	6687	broad.mit.edu	36	16	88118047	88118047	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003119	exon4	c.T509C	p.F170S	.	.	.
NPRL3	8131	broad.mit.edu	36	16	88266	88266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039476	exon6	c.G264T	p.E88D	.	.	.
USP7	7874	broad.mit.edu	36	16	8903753	8903753	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003470	exon17	c.G1927A	p.D643N	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765750	9765750	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon13	c.A3152G	p.Y1051C	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19547452	19547452	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ERI2	112479	broad.mit.edu	36	16	20721757	20721757	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21055140	21055140	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22057343	22057343	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ABCA3	21	broad.mit.edu	36	16	2293963	2293963	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PALB2	79728	broad.mit.edu	36	16	23541781	23541781	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CHP2	63928	broad.mit.edu	36	16	23675022	23675022	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24734138	24734138	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STX4	6810	broad.mit.edu	36	16	30958630	30958630	+	3'UTR	SNP	G	A	A	rs34576482	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BCKDK	10295	broad.mit.edu	36	16	31029909	31029909	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CLUAP1	23059	broad.mit.edu	36	16	3494836	3494836	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LONP2	83752	broad.mit.edu	36	16	46868744	46868744	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
N4BP1	9683	broad.mit.edu	36	16	47139527	47139527	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NKD1	85407	broad.mit.edu	36	16	49216885	49216885	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C16orf89	146556	broad.mit.edu	36	16	5037978	5037978	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MMP2	4313	broad.mit.edu	36	16	54094184	54094184	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CES5A	221223	broad.mit.edu	36	16	54454756	54454756	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MT1G	4495	broad.mit.edu	36	16	55258802	55258802	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NUP93	9688	broad.mit.edu	36	16	55421935	55421935	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC12A3	6559	broad.mit.edu	36	16	55504819	55504819	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CNGB1	1258	broad.mit.edu	36	16	56540751	56540751	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LOC283867	283867	broad.mit.edu	36	16	63876814	63876814	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CES4A	283848	broad.mit.edu	36	16	65594467	65594467	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69509839	69509839	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69721039	69721039	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIAA0174	9798	broad.mit.edu	36	16	70513873	70513873	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TXNL4B	54957	broad.mit.edu	36	16	70678031	70678031	+	3'UTR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75886535	75886535	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SPATA22	84690	broad.mit.edu	36	17	3290261	3290262	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170697	exon9	c.1022_1023insA	p.T341fs	.	.	.
MYH13	8735	broad.mit.edu	36	17	10156735	10156735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003802	exon31	c.G4246A	p.A1416T	.	.	.
MYH8	4626	broad.mit.edu	36	17	10236648	10236648	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon38	c.G5504A	p.R1835H	.	.	.
MYH8	4626	broad.mit.edu	36	17	10250847	10250847	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon19	c.G2056A	p.A686T	.	.	.
MYH8	4626	broad.mit.edu	36	17	10256756	10256756	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon13	c.G1162T	p.A388S	.	.	.
MYH8	4626	broad.mit.edu	36	17	10259531	10259531	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon7	c.G631A	p.E211K	.	.	.
MYH8	4626	broad.mit.edu	36	17	10262784	10262784	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon5	c.G414A	p.K138K	.	.	.
MYH4	4622	broad.mit.edu	36	17	10289143	10289143	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017533	exon37	c.G5341A	p.A1781T	.	.	.
MYH4	4622	broad.mit.edu	36	17	10299888	10299888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017533	exon18	c.G2024A	p.R675Q	.	.	.
MYH1	4619	broad.mit.edu	36	17	10341410	10341410	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon32	c.G4450T	p.E1484X	.	.	.
MYH1	4619	broad.mit.edu	36	17	10345722	10345722	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon26	c.G3262T	p.E1088X	.	.	.
MYH1	4619	broad.mit.edu	36	17	10345854	10345854	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon25	c.A3211G	p.M1071V	.	.	.
MYH1	4619	broad.mit.edu	36	17	10360329	10360329	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon4	c.A260C	p.K87T	.	.	.
MYH2	4620	broad.mit.edu	36	17	10373939	10373939	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100112	exon23	c.G2875T	p.D959Y	.	.	.
MYH2	4620	broad.mit.edu	36	17	10379117	10379117	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100112	exon19	c.G2178A	p.Q726Q	.	.	.
MYH2	4620	broad.mit.edu	36	17	10379405	10379405	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100112	exon18	c.G1977T	p.E659D	.	.	.
C17orf48	56985	broad.mit.edu	36	17	10554979	10554979	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020233	exon4	c.C822A	p.F274L	.	.	.
TUSC5	286753	broad.mit.edu	36	17	1130189	1130189	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172367	exon1	c.G144A	p.S48S	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11473575	11473575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon7	c.G1467A	p.M489I	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11496874	11496874	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon14	c.G2425T	p.D809Y	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11508964	11508964	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon15	c.C2685A	p.F895L	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11513810	11513810	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon17	c.G3327T	p.Q1109H	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11548418	11548418	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon25	c.G5325T	p.K1775N	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11549088	11549088	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon26	c.C5413A	p.L1805I	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11627707	11627707	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon40	c.T7738C	p.S2580P	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11969382	11969382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003010	exon8	c.G860A	p.R287H	.	.	.
MYOCD	93649	broad.mit.edu	36	17	12607359	12607359	+	Silent	SNP	C	T	T	rs28730829	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146312	exon14	c.C2634T	p.S878S	.	.	.
INPP5K	51763	broad.mit.edu	36	17	1348156	1348156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016532	exon8	c.C787T	p.R263C	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1506523	1506523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006445	exon36	c.C5706T	p.F1902F	.	.	.
TEKT3	64518	broad.mit.edu	36	17	15175456	15175456	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031898	exon3	c.G172T	p.V58F	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1531681	1531681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006445	exon6	c.C707T	p.S236L	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15560968	15560968	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020652	exon6	c.G1205T	p.R402I	.	.	.
ZNF286A	57335	broad.mit.edu	36	17	15561136	15561136	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020652	exon6	c.G1373T	p.R458I	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15909729	15909729	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon32	c.G4794A	p.A1598A	.	.	.
SERPINF1	5176	broad.mit.edu	36	17	1621130	1621130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002615	exon4	c.G341A	p.S114N	.	.	.
SERPINF1	5176	broad.mit.edu	36	17	1626641	1626641	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002615	exon7	c.G852T	p.Q284H	.	.	.
ZNF624	57547	broad.mit.edu	36	17	16468073	16468073	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020787	exon6	c.C852T	p.A284A	.	.	.
TNFRSF13B	23495	broad.mit.edu	36	17	16796497	16796497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012452	exon2	c.G187A	p.A63T	.	.	.
TOM1L2	146691	broad.mit.edu	36	17	17728725	17728725	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082968	exon5	c.A449C	p.E150A	.	.	.
FLII	2314	broad.mit.edu	36	17	18089811	18089811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002018	exon27	c.G3475A	p.E1159K	.	.	.
SMCR8	140775	broad.mit.edu	36	17	18160222	18160222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144775	exon1	c.G394A	p.A132T	.	.	.
TBC1D28	254272	broad.mit.edu	36	17	18481950	18481950	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039397	exon9	c.G449T	p.S150I	.	.	.
TBC1D28	254272	broad.mit.edu	36	17	18482422	18482422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039397	exon8	c.G316A	p.V106M	.	.	.
TRIM16L	147166	broad.mit.edu	36	17	18571639	18571639	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037330	exon2	c.C44T	p.A15V	.	.	.
FBXW10	10517	broad.mit.edu	36	17	18622573	18622573	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031456	exon14	c.G2393T	p.S798I	.	.	.
SMG6	23293	broad.mit.edu	36	17	1915553	1915553	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170957	exon17	c.G3913A	p.E1305K	.	.	.
SLC47A1	55244	broad.mit.edu	36	17	19393550	19393550	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018242	exon5	c.A466G	p.T156A	.	.	.
ALDH3A2	224	broad.mit.edu	36	17	19500274	19500274	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031806	exon4	c.C475A	p.L159I	.	.	.
LGALS9B	284194	broad.mit.edu	36	17	20302187	20302187	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042685	exon3	c.G234T	p.Q78H	.	.	.
TSR1	55720	broad.mit.edu	36	17	2182214	2182214	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018128	exon8	c.C1495T	p.R499X	.	.	.
TSR1	55720	broad.mit.edu	36	17	2184702	2184702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018128	exon5	c.G795T	p.E265D	.	.	.
METT10D	79066	broad.mit.edu	36	17	2288190	2288190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024086	exon8	c.C851T	p.A284V	.	.	.
NOS2	4843	broad.mit.edu	36	17	23140083	23140083	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000625	exon4	c.A197T	p.K66M	.	.	.
TNFAIP1	7126	broad.mit.edu	36	17	23693431	23693431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021137	exon6	c.G550A	p.E184K	.	.	.
SEBOX	645832	broad.mit.edu	36	17	23715698	23715698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080837	exon3	c.G370A	p.D124N	.	.	.
VTN	7448	broad.mit.edu	36	17	23720038	23720038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000638	exon5	c.C808T	p.R270W	.	.	.
SLC13A2	9058	broad.mit.edu	36	17	23842926	23842926	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145976	exon5	c.C678T	p.F226F	.	.	.
SPAG5	10615	broad.mit.edu	36	17	23936688	23936688	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006461	exon8	c.G1851T	p.Q617H	.	.	.
SPAG5	10615	broad.mit.edu	36	17	23944201	23944201	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006461	exon3	c.A188G	p.N63S	.	.	.
SGK494	124923	broad.mit.edu	36	17	23964288	23964288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174103	exon4	c.G412A	p.V138M	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23990491	23990491	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014680	exon11	c.A1198C	p.S400R	.	.	.
RAB34	83871	broad.mit.edu	36	17	24066233	24066233	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142625	exon9	c.C722G	p.A241G	.	.	.
NEK8	284086	broad.mit.edu	36	17	24089844	24089844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178170	exon9	c.C1251T	p.S417S	.	.	.
SEZ6	124925	broad.mit.edu	36	17	24333050	24333050	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178860	exon2	c.C189A	p.T63T	.	.	.
PIPOX	51268	broad.mit.edu	36	17	24406353	24406353	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016518	exon6	c.C954A	p.S318R	.	.	.
MYO18A	399687	broad.mit.edu	36	17	24462894	24462894	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203318	exon16	c.T2712G	p.Y904X	.	.	.
TAOK1	57551	broad.mit.edu	36	17	24846811	24846811	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020791	exon11	c.G939T	p.K313N	.	.	.
TAOK1	57551	broad.mit.edu	36	17	24885385	24885385	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020791	exon19	c.C2485T	p.R829X	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25351118	25351118	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145053	exon7	c.G874T	p.E292X	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25404479	25404479	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145053	exon10	c.T1213G	p.F405V	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25404950	25404950	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145053	exon10	c.C1684T	p.R562X	.	.	.
SLC6A4	6532	broad.mit.edu	36	17	25561686	25561686	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001045	exon11	c.C1422A	p.F474L	.	.	.
BLMH	642	broad.mit.edu	36	17	25600284	25600284	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000386	exon12	c.C1245A	p.F415L	.	.	.
BLMH	642	broad.mit.edu	36	17	25625274	25625274	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000386	exon7	c.A713G	p.K238R	.	.	.
CPD	1362	broad.mit.edu	36	17	25793569	25793569	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199775	exon10	c.G1607T	p.R536I	.	.	.
CPD	1362	broad.mit.edu	36	17	25796917	25796917	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199775	exon12	c.G1885T	p.D629Y	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26186247	26186247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon2	c.G1022A	p.R341Q	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26211718	26211718	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon10	c.G3098T	p.R1033I	.	.	.
NF1	4763	broad.mit.edu	36	17	26700285	26700285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000267	exon48	c.C7148T	p.A2383V	.	.	.
LRRC37B	114659	broad.mit.edu	36	17	27373820	27373820	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052888	exon1	c.C1542T	p.A514A	.	.	.
C17orf75	64149	broad.mit.edu	36	17	27682918	27682918	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022344	exon10	c.G1168A	p.E390K	.	.	.
PSMD11	5717	broad.mit.edu	36	17	27815665	27815665	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002815	exon5	c.C404A	p.S135Y	.	.	.
MYO1D	4642	broad.mit.edu	36	17	28072246	28072246	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015194	exon15	c.G1821A	p.R607R	.	.	.
TMEM98	26022	broad.mit.edu	36	17	28287543	28287543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033504	exon5	c.C378T	p.S126S	.	.	.
SPACA3	124912	broad.mit.edu	36	17	28348874	28348874	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173847	exon5	c.G613T	p.D205Y	.	.	.
ACCN1	40	broad.mit.edu	36	17	28368756	28368756	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183377	exon8	c.C1501T	p.L501F	.	.	.
OR1G1	8390	broad.mit.edu	36	17	2976852	2976852	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003555	exon1	c.C744A	p.V248V	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29983956	29983956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207313	exon7	c.C1333T	p.P445S	.	.	.
RAD51L3	5892	broad.mit.edu	36	17	30469668	30469668	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002878	exon3	c.G228T	p.K76N	.	.	.
FNDC8	54752	broad.mit.edu	36	17	30473008	30473008	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017559	exon1	c.C183A	p.F61L	.	.	.
OR1A2	26189	broad.mit.edu	36	17	3048462	3048462	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012352	exon1	c.G900T	p.Q300H	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30501185	30501185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033576	exon4	c.G211A	p.D71N	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30504104	30504104	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033576	exon5	c.A461C	p.K154T	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30519375	30519375	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033576	exon10	c.T1334A	p.L445H	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30525420	30525420	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033576	exon14	c.C1877T	p.A626V	.	.	.
SLFN5	162394	broad.mit.edu	36	17	30616376	30616376	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144975	exon5	c.G2032T	p.V678F	.	.	.
AP2B1	163	broad.mit.edu	36	17	30977905	30977905	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001282	exon7	c.C869A	p.T290N	.	.	.
GAS2L2	246176	broad.mit.edu	36	17	31097282	31097282	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139285	exon6	c.G1347T	p.G449G	.	.	.
C17orf66	256957	broad.mit.edu	36	17	31206826	31206826	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152781	exon14	c.C1320A	p.L440L	.	.	.
MYO19	80179	broad.mit.edu	36	17	31955206	31955206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033580	exon7	c.C380T	p.S127F	.	.	.
AATF	26574	broad.mit.edu	36	17	32452425	32452425	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012138	exon10	c.C1546T	p.R516W	.	.	.
ACACA	31	broad.mit.edu	36	17	32623179	32623179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198839	exon41	c.C4270T	p.R1424C	.	.	.
ACACA	31	broad.mit.edu	36	17	32666104	32666104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198839	exon29	c.G3034A	p.A1012T	.	.	.
ACACA	31	broad.mit.edu	36	17	32694764	32694764	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198839	exon15	c.G1155T	p.Q385H	.	.	.
OR3A3	8392	broad.mit.edu	36	17	3271474	3271474	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012373	exon1	c.C863A	p.T288N	.	.	.
OR1E2	8388	broad.mit.edu	36	17	3283859	3283859	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003554	exon1	c.C27A	p.I9I	.	.	.
SYNRG	11276	broad.mit.edu	36	17	32976455	32976455	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007247	exon15	c.G2934A	p.K978K	.	.	.
SPATA22	84690	broad.mit.edu	36	17	3299074	3299074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170696	exon5	c.C320T	p.S107L	.	.	.
SYNRG	11276	broad.mit.edu	36	17	32995468	32995468	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007247	exon13	c.T1605A	p.P535P	.	.	.
ASPA	443	broad.mit.edu	36	17	3331721	3331721	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128085	exon3	c.A311G	p.D104G	.	.	.
C17orf98	388381	broad.mit.edu	36	17	34246952	34246952	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080465	exon2	c.G275T	p.R92I	.	.	.
FBXO47	494188	broad.mit.edu	36	17	34354784	34354784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008777	exon7	c.G748A	p.A250T	.	.	.
STAC2	342667	broad.mit.edu	36	17	34624901	34624901	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198993	exon5	c.G695A	p.S232N	.	.	.
CDK12	51755	broad.mit.edu	36	17	34881115	34881115	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016507	exon2	c.G1504T	p.D502Y	.	.	.
GRB7	2886	broad.mit.edu	36	17	35153211	35153211	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005310	exon6	c.G625A	p.D209N	.	.	.
IKZF3	22806	broad.mit.edu	36	17	35241915	35241915	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183230	exon2	c.C23T	p.A8V	.	.	.
ZPBP2	124626	broad.mit.edu	36	17	35286477	35286477	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199321	exon8	c.G906A	p.A302A	.	.	.
PSMD3	5709	broad.mit.edu	36	17	35399521	35399521	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002809	exon5	c.C690A	p.F230L	.	.	.
THRA	7067	broad.mit.edu	36	17	35498151	35498151	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199334	exon8	c.A854G	p.E285G	.	.	.
MSL1	339287	broad.mit.edu	36	17	35543342	35543342	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012241	exon8	c.G797T	p.R266I	.	.	.
KRT222	125113	broad.mit.edu	36	17	36066325	36066325	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152349	exon6	c.C743A	p.S248Y	.	.	.
KRT28	162605	broad.mit.edu	36	17	36206781	36206781	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181535	exon5	c.C891T	p.G297G	.	.	.
KRTAP4-3	85290	broad.mit.edu	36	17	36577407	36577407	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033187	exon1	c.A544G	p.T182A	.	.	.
KRT33A	3883	broad.mit.edu	36	17	36760391	36760391	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004138	exon1	c.T155C	p.F52S	.	.	.
KRT33B	3884	broad.mit.edu	36	17	36774776	36774776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002279	exon6	c.G878A	p.R293Q	.	.	.
KRT33B	3884	broad.mit.edu	36	17	36779404	36779404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002279	exon1	c.G125A	p.S42N	.	.	.
KRT31	3881	broad.mit.edu	36	17	36807255	36807255	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002277	exon1	c.C63T	p.C21C	.	.	.
KRT32	3882	broad.mit.edu	36	17	36877008	36877008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002278	exon1	c.G96A	p.R32R	.	.	.
KRT19	3880	broad.mit.edu	36	17	36933602	36933602	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002276	exon6	c.G1122T	p.E374D	.	.	.
KRT9	3857	broad.mit.edu	36	17	36977325	36977325	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000226	exon7	c.G1598T	p.G533V	.	.	.
DNAJC7	7266	broad.mit.edu	36	17	37401911	37401911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144766	exon4	c.C181T	p.R61C	.	.	.
NKIRAS2	28511	broad.mit.edu	36	17	37428066	37428066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017595	exon3	c.G218A	p.R73Q	.	.	.
KCNH4	23415	broad.mit.edu	36	17	37577509	37577509	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012285	exon7	c.C1018T	p.R340W	.	.	.
STAT5B	6777	broad.mit.edu	36	17	37613266	37613266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012448	exon16	c.G1913T	p.R638I	.	.	.
STAT3	6774	broad.mit.edu	36	17	37739464	37739464	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213662	exon9	c.C927T	p.I309I	.	.	.
STAT3	6774	broad.mit.edu	36	17	37753987	37753987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213662	exon2	c.G74A	p.S25N	.	.	.
MLX	6945	broad.mit.edu	36	17	37975687	37975687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198204	exon7	c.C638T	p.A213V	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38093332	38093332	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003632	exon8	c.C1113T	p.F371F	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38098112	38098112	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003632	exon17	c.A2600G	p.D867G	.	.	.
EZH1	2145	broad.mit.edu	36	17	38110658	38110658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001991	exon17	c.G1909A	p.E637K	.	.	.
G6PC	2538	broad.mit.edu	36	17	38313158	38313158	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000151	exon3	c.A433G	p.T145A	.	.	.
AARSD1	80755	broad.mit.edu	36	17	38384786	38384786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142654	exon3	c.G230A	p.R77H	.	.	.
RUNDC1	146923	broad.mit.edu	36	17	38396898	38396898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173079	exon5	c.G1481A	p.R494Q	.	.	.
BRCA1	672	broad.mit.edu	36	17	38498613	38498613	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007294	exon10	c.G2461T	p.D821Y	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3882278	3882278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015113	exon42	c.C6783T	p.C2261C	.	.	.
DHX8	1659	broad.mit.edu	36	17	38925904	38925904	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004941	exon6	c.T833C	p.F278S	.	.	.
ETV4	2118	broad.mit.edu	36	17	38965708	38965708	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001986	exon8	c.G671T	p.S224I	.	.	.
MPP3	4356	broad.mit.edu	36	17	39241960	39241960	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001932	exon19	c.C1471T	p.L491L	.	.	.
LSM12	124801	broad.mit.edu	36	17	39470418	39470418	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152344	exon5	c.A383C	p.K128T	.	.	.
C17orf53	78995	broad.mit.edu	36	17	39581576	39581576	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171251	exon3	c.A879C	p.Q293H	.	.	.
UBTF	7343	broad.mit.edu	36	17	39644216	39644216	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076683	exon10	c.G946T	p.D316Y	.	.	.
UBTF	7343	broad.mit.edu	36	17	39644544	39644544	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001076683	exon9	c.C892A	p.L298M	.	.	.
ITGA2B	3674	broad.mit.edu	36	17	39813532	39813532	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000419	exon14	c.C1401T	p.I467I	.	.	.
ITGA2B	3674	broad.mit.edu	36	17	39817858	39817858	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000419	exon7	c.C783A	p.Y261X	.	.	.
FZD2	2535	broad.mit.edu	36	17	39990855	39990855	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001466	exon1	c.C273T	p.F91F	.	.	.
FZD2	2535	broad.mit.edu	36	17	39991881	39991881	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001466	exon1	c.C1299T	p.A433A	.	.	.
C17orf104	284071	broad.mit.edu	36	17	40100275	40100275	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145080	exon5	c.T1470G	p.P490P	.	.	.
DBF4B	80174	broad.mit.edu	36	17	40162853	40162853	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025104	exon4	c.G280T	p.E94X	.	.	.
DBF4B	80174	broad.mit.edu	36	17	40174277	40174277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025104	exon10	c.C761A	p.S254Y	.	.	.
ADAM11	4185	broad.mit.edu	36	17	40209066	40209066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002390	exon18	c.G1531A	p.D511N	.	.	.
GJC1	10052	broad.mit.edu	36	17	40237805	40237805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005497	exon3	c.G907A	p.E303K	.	.	.
ANKFY1	51479	broad.mit.edu	36	17	4023993	4023993	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016376	exon20	c.T2886G	p.N962K	.	.	.
KIF18B	146909	broad.mit.edu	36	17	40368964	40368964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080443	exon2	c.G275A	p.S92N	.	.	.
C17orf46	124783	broad.mit.edu	36	17	40688459	40688459	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152343	exon4	c.T873G	p.N291K	.	.	.
MAP3K14	9020	broad.mit.edu	36	17	40719760	40719760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003954	exon5	c.C972T	p.L324L	.	.	.
IMP5	162540	broad.mit.edu	36	17	41278904	41278904	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175882	exon1	c.C852A	p.I284I	.	.	.
UBE2G1	7326	broad.mit.edu	36	17	4132938	4132938	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003342	exon5	c.G454T	p.E152X	.	.	.
MAPT	4137	broad.mit.edu	36	17	41416996	41416996	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123066	exon6	c.C989T	p.A330V	.	.	.
LRRC37A2	474170	broad.mit.edu	36	17	41981501	41981501	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006607	exon9	c.C3680T	p.A1227V	.	.	.
WNT3	7473	broad.mit.edu	36	17	42201131	42201131	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030753	exon4	c.G792A	p.S264S	.	.	.
CDC27	996	broad.mit.edu	36	17	42554857	42554857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114091	exon18	c.C2362T	p.R788C	.	.	.
CDC27	996	broad.mit.edu	36	17	42556280	42556280	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114091	exon17	c.G2224T	p.E742X	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42716913	42716913	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000212	exon4	c.G467T	p.S156I	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42722133	42722133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000212	exon7	c.C1027A	p.L343I	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42739961	42739961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000212	exon14	c.G2260A	p.A754T	.	.	.
ITGB3	3690	broad.mit.edu	36	17	42742511	42742511	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000212	exon15	c.A2309G	p.N770S	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42776656	42776656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195192	exon7	c.C433T	p.R145W	.	.	.
C17orf57	124989	broad.mit.edu	36	17	42777398	42777398	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195192	exon8	c.C452A	p.S151Y	.	.	.
OSBPL7	114881	broad.mit.edu	36	17	43241770	43241770	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145798	exon19	c.G1954A	p.E652K	.	.	.
CDK5RAP3	80279	broad.mit.edu	36	17	43407564	43407564	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176096	exon6	c.G375T	p.E125D	.	.	.
SPNS2	124976	broad.mit.edu	36	17	4380779	4380779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001124758	exon4	c.C677T	p.T226M	.	.	.
TTLL6	284076	broad.mit.edu	36	17	44202377	44202377	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130918	exon14	c.A2122G	p.T708A	.	.	.
DLX4	1748	broad.mit.edu	36	17	45406122	45406122	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001934	exon2	c.C323A	p.S108Y	.	.	.
DLX4	1748	broad.mit.edu	36	17	45406290	45406290	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001934	exon2	c.C491T	p.S164L	.	.	.
DLX3	1747	broad.mit.edu	36	17	45424205	45424205	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005220	exon3	c.G539A	p.R180H	.	.	.
SAMD14	201191	broad.mit.edu	36	17	45546563	45546563	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174920	exon9	c.A1013C	p.Q338P	.	.	.
MRPL27	51264	broad.mit.edu	36	17	45800515	45800515	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016504	exon4	c.G384T	p.K128N	.	.	.
LRRC59	55379	broad.mit.edu	36	17	45820471	45820471	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018509	exon5	c.G451A	p.V151M	.	.	.
CHAD	1101	broad.mit.edu	36	17	45898228	45898228	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001267	exon2	c.C777A	p.F259L	.	.	.
MYCBPAP	84073	broad.mit.edu	36	17	45955989	45955989	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032133	exon12	c.A1609G	p.T537A	.	.	.
WFIKKN2	124857	broad.mit.edu	36	17	46272023	46272023	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175575	exon2	c.C375A	p.I125I	.	.	.
GLTPD2	388323	broad.mit.edu	36	17	4639574	4639574	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014985	exon3	c.C200T	p.A67V	.	.	.
MBTD1	54799	broad.mit.edu	36	17	46639279	46639279	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017643	exon7	c.C573T	p.V191V	.	.	.
PLD2	5338	broad.mit.edu	36	17	4668818	4668818	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002663	exon20	c.C2073A	p.I691I	.	.	.
ENO3	2027	broad.mit.edu	36	17	4797350	4797350	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053013	exon5	c.T278G	p.F93C	.	.	.
CAMTA2	23125	broad.mit.edu	36	17	4824196	4824196	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171167	exon9	c.A1214G	p.N405S	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49255743	49255743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032559	exon1	c.C350T	p.A117V	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49255913	49255913	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032559	exon1	c.C520T	p.R174C	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49256920	49256920	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032559	exon1	c.C1527T	p.G509G	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4935784	4935784	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153018	exon2	c.G261T	p.E87D	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4936135	4936135	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153018	exon2	c.G612T	p.K204N	.	.	.
ZFP3	124961	broad.mit.edu	36	17	4936862	4936862	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153018	exon2	c.A1339G	p.K447E	.	.	.
HLF	3131	broad.mit.edu	36	17	50700226	50700226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002126	exon2	c.C231T	p.D77D	.	.	.
ANKFN1	162282	broad.mit.edu	36	17	51786318	51786318	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153228	exon5	c.C522A	p.G174G	.	.	.
DERL2	51009	broad.mit.edu	36	17	5324525	5324525	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016041	exon5	c.C429A	p.F143L	.	.	.
RNF43	54894	broad.mit.edu	36	17	53794944	53794944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017763	exon6	c.C647T	p.S216L	.	.	.
HSF5	124535	broad.mit.edu	36	17	53895362	53895362	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080439	exon4	c.C1322A	p.S441Y	.	.	.
C17orf47	284083	broad.mit.edu	36	17	53976429	53976429	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001038704	exon1	c.C118T	p.R40X	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5426789	5426789	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033004	exon2	c.C373T	p.P125S	.	.	.
PPM1E	22843	broad.mit.edu	36	17	54397884	54397884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014906	exon3	c.G631A	p.E211K	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54511897	54511897	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015294	exon7	c.G616T	p.G206C	.	.	.
C17orf71	55181	broad.mit.edu	36	17	54643776	54643776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018149	exon1	c.C1582T	p.L528F	.	.	.
YPEL2	388403	broad.mit.edu	36	17	54829260	54829260	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005404	exon5	c.G287A	p.S96N	.	.	.
CLTC	1213	broad.mit.edu	36	17	55113071	55113071	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004859	exon19	c.T2936C	p.L979S	.	.	.
PTRH2	51651	broad.mit.edu	36	17	55130008	55130008	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016077	exon2	c.G114T	p.G38G	.	.	.
RPS6KB1	6198	broad.mit.edu	36	17	55372990	55372990	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003161	exon13	c.G1131A	p.E377E	.	.	.
CA4	762	broad.mit.edu	36	17	55589659	55589659	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000717	exon4	c.G358A	p.D120N	.	.	.
USP32	84669	broad.mit.edu	36	17	55612765	55612765	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032582	exon33	c.C4564A	p.L1522M	.	.	.
USP32	84669	broad.mit.edu	36	17	55726940	55726940	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032582	exon4	c.T297G	p.I99M	.	.	.
TBX4	9496	broad.mit.edu	36	17	56910883	56910883	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018488	exon5	c.G663T	p.E221D	.	.	.
MED13	9969	broad.mit.edu	36	17	57383126	57383126	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005121	exon28	c.C6133T	p.R2045W	.	.	.
MED13	9969	broad.mit.edu	36	17	57393869	57393869	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005121	exon22	c.C5118A	p.I1706I	.	.	.
MED13	9969	broad.mit.edu	36	17	57443084	57443084	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005121	exon9	c.G1576A	p.E526K	.	.	.
MED13	9969	broad.mit.edu	36	17	57461705	57461705	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005121	exon8	c.G1262T	p.R421I	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58167537	58167537	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100875	exon6	c.C1424A	p.S475X	.	.	.
TANC2	26115	broad.mit.edu	36	17	58836331	58836331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025185	exon18	c.C3226T	p.R1076C	.	.	.
TANC2	26115	broad.mit.edu	36	17	58851098	58851098	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025185	exon25	c.C4023T	p.F1341F	.	.	.
KCNH6	81033	broad.mit.edu	36	17	58973420	58973420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030779	exon9	c.G2041A	p.D681N	.	.	.
MAP3K3	4215	broad.mit.edu	36	17	59122253	59122253	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203351	exon14	c.C1365T	p.I455I	.	.	.
PSMC5	5705	broad.mit.edu	36	17	59262703	59262703	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002805	exon10	c.G1075T	p.V359L	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59372817	59372817	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon24	c.C4557T	p.F1519F	.	.	.
ERN1	2081	broad.mit.edu	36	17	59479070	59479070	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001433	exon19	c.C2409A	p.V803V	.	.	.
PECAM1	5175	broad.mit.edu	36	17	59760811	59760811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000442	exon14	c.C1895T	p.A632V	.	.	.
RGS9	8787	broad.mit.edu	36	17	60634558	60634558	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003835	exon16	c.T1260A	p.A420A	.	.	.
AXIN2	8313	broad.mit.edu	36	17	60968078	60968078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004655	exon4	c.G1016A	p.R339H	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61278435	61278435	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199165	exon21	c.A2343C	p.K781N	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61388077	61388077	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199165	exon18	c.A1838G	p.N613S	.	.	.
CCDC46	201134	broad.mit.edu	36	17	61496519	61496519	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199165	exon9	c.G831T	p.Q277H	.	.	.
PRKCA	5578	broad.mit.edu	36	17	62169259	62169259	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002737	exon13	c.C1443A	p.D481E	.	.	.
HELZ	9931	broad.mit.edu	36	17	62536180	62536180	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014877	exon29	c.G4003T	p.D1335Y	.	.	.
AIPL1	23746	broad.mit.edu	36	17	6269686	6269686	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033054	exon5	c.A784G	p.N262D	.	.	.
PITPNC1	26207	broad.mit.edu	36	17	63004813	63004813	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181671	exon5	c.A344G	p.D115G	.	.	.
PITPNM3	83394	broad.mit.edu	36	17	6322099	6322099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165966	exon7	c.G712A	p.D238N	.	.	.
FAM20A	54757	broad.mit.edu	36	17	64051424	64051424	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017565	exon5	c.C753A	p.F251L	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64376077	64376077	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007168	exon37	c.A4607C	p.D1536A	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6439059	6439059	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014804	exon16	c.C2397T	p.I799I	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64415517	64415517	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007168	exon16	c.T2117G	p.L706R	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64497549	64497549	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon30	c.G3955T	p.G1319C	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6452506	6452506	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014804	exon10	c.C1715A	p.A572D	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64535382	64535382	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon13	c.G1785T	p.E595D	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64539874	64539874	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon10	c.C1415A	p.S472Y	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64664575	64664575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080282	exon29	c.G3448A	p.V1150I	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64709322	64709322	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080282	exon11	c.C1089A	p.I363I	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64709401	64709401	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080282	exon11	c.A1010C	p.K337T	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64762081	64762081	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon32	c.G4214T	p.S1405I	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64762152	64762152	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon32	c.G4143T	p.Q1381H	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64797714	64797714	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172232	exon13	c.A1666C	p.K556Q	.	.	.
ABCA5	23461	broad.mit.edu	36	17	64802393	64802393	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_172232	exon11	c.G1493T	p.R498I	.	.	.
MAP2K6	5608	broad.mit.edu	36	17	65027081	65027081	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002758	exon5	c.G279T	p.Q93H	.	.	.
KCNJ16	3773	broad.mit.edu	36	17	65640643	65640643	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170742	exon4	c.G820T	p.D274Y	.	.	.
TEKT1	83659	broad.mit.edu	36	17	6644168	6644168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053285	exon8	c.G1159A	p.E387K	.	.	.
COG1	9382	broad.mit.edu	36	17	68709595	68709595	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018714	exon7	c.C2034T	p.S678S	.	.	.
COG1	9382	broad.mit.edu	36	17	68711461	68711461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018714	exon9	c.G2316A	p.M772I	.	.	.
C17orf80	55028	broad.mit.edu	36	17	68750703	68750703	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100622	exon5	c.C1695T	p.F565F	.	.	.
SDK2	54549	broad.mit.edu	36	17	68909843	68909843	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144952	exon19	c.G2517T	p.E839D	.	.	.
TTYH2	94015	broad.mit.edu	36	17	69760870	69760870	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032646	exon12	c.C1315T	p.R439C	.	.	.
CD300LD	100131439	broad.mit.edu	36	17	70087740	70087740	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115152	exon4	c.C581A	p.S194Y	.	.	.
FDXR	2232	broad.mit.edu	36	17	70372634	70372634	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024417	exon7	c.G624A	p.T208T	.	.	.
OTOP3	347741	broad.mit.edu	36	17	70450985	70450985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178233	exon4	c.C637T	p.L213F	.	.	.
ACADVL	37	broad.mit.edu	36	17	7067764	7067764	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000018	exon12	c.C1260A	p.I420I	.	.	.
CTDNEP1	23399	broad.mit.edu	36	17	7090398	7090398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015343	exon6	c.G376A	p.E126K	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71172767	71172767	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003716	exon3	c.G211T	p.G71C	.	.	.
SLC2A4	6517	broad.mit.edu	36	17	7128537	7128537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042	exon7	c.G737A	p.R246H	.	.	.
YBX2	51087	broad.mit.edu	36	17	7135188	7135188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015982	exon4	c.G407A	p.R136H	.	.	.
SRP68	6730	broad.mit.edu	36	17	71547496	71547496	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014230	exon16	c.C1770A	p.F590L	.	.	.
GPS2	2874	broad.mit.edu	36	17	7157158	7157158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004489	exon10	c.C814T	p.R272C	.	.	.
NEURL4	84461	broad.mit.edu	36	17	7162134	7162134	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032442	exon25	c.G4034A	p.R1345H	.	.	.
NEURL4	84461	broad.mit.edu	36	17	7168950	7168950	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032442	exon9	c.C1705T	p.R569C	.	.	.
ST6GALNAC1	55808	broad.mit.edu	36	17	72136713	72136713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018414	exon2	c.C807A	p.S269R	.	.	.
MXRA7	439921	broad.mit.edu	36	17	72185301	72185301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008528	exon4	c.C579T	p.G193G	.	.	.
JMJD6	23210	broad.mit.edu	36	17	72233423	72233423	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015167	exon2	c.C239A	p.S80Y	.	.	.
CHRNB1	1140	broad.mit.edu	36	17	7290127	7290127	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000747	exon3	c.G214T	p.E72X	.	.	.
SEPT9	10801	broad.mit.edu	36	17	72909745	72909745	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113493	exon2	c.G65T	p.R22I	.	.	.
AMAC1L3	643664	broad.mit.edu	36	17	7326144	7326144	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102614	exon2	c.C117T	p.G39G	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7357196	7357196	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000937	exon29	c.C4889A	p.S1630Y	.	.	.
Unknown	0	broad.mit.edu	36	17	73934777	73934777	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173628	exon78	c.C12596T	p.A4199V	.	.	.
Unknown	0	broad.mit.edu	36	17	74065878	74065878	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173628	exon14	c.G2085T	p.E695D	.	.	.
USP36	57602	broad.mit.edu	36	17	74306158	74306158	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025090	exon20	c.G3311A	p.R1104Q	.	.	.
C1QTNF1	114897	broad.mit.edu	36	17	74555558	74555558	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198594	exon3	c.G393T	p.K131N	.	.	.
SAT2	112483	broad.mit.edu	36	17	7471030	7471030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133491	exon4	c.G260A	p.R87H	.	.	.
SHBG	6462	broad.mit.edu	36	17	7474290	7474290	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040	exon1	c.C75T	p.R25R	.	.	.
TP53	7157	broad.mit.edu	36	17	7519132	7519132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon5	c.C523T	p.R175C	 TP53,lung,NS,Substitution - Missense,+1 	.	.
CBX8	57332	broad.mit.edu	36	17	75383033	75383033	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020649	exon5	c.G1166T	p.R389I	.	.	.
RNF213	57674	broad.mit.edu	36	17	75931556	75931556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon28	c.G6166A	p.D2056N	.	.	.
RNF213	57674	broad.mit.edu	36	17	75933820	75933820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon30	c.G7237A	p.D2413N	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7608175	7608175	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon19	c.G3195A	p.P1065P	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7622401	7622401	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon34	c.C5430T	p.T1810T	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7640626	7640626	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon49	c.C7794T	p.T2598T	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7645675	7645675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon56	c.C8754A	p.F2918L	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7645750	7645750	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon56	c.G8829T	p.E2943D	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7663093	7663093	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon70	c.A10802G	p.D3601G	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7675465	7675465	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon80	c.G12492T	p.K4164N	.	.	.
SLC38A10	124565	broad.mit.edu	36	17	76840730	76840730	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037984	exon13	c.G1805A	p.G602D	.	.	.
NPLOC4	55666	broad.mit.edu	36	17	77174729	77174729	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017921	exon10	c.G973A	p.V325I	.	.	.
CHD3	1107	broad.mit.edu	36	17	7735068	7735068	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005852	exon4	c.A470C	p.H157P	.	.	.
P4HB	5034	broad.mit.edu	36	17	77406709	77406709	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000918	exon3	c.G395A	p.R132H	.	.	.
NARF	26502	broad.mit.edu	36	17	78023751	78023751	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031968	exon5	c.G408A	p.T136T	.	.	.
ALOXE3	59344	broad.mit.edu	36	17	7952572	7952572	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021628	exon13	c.G1623A	p.S541S	.	.	.
AURKB	9212	broad.mit.edu	36	17	8051249	8051249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004217	exon5	c.G368A	p.R123H	.	.	.
ARHGEF15	22899	broad.mit.edu	36	17	8163369	8163369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025014	exon14	c.G2201A	p.R734H	.	.	.
ODF4	146852	broad.mit.edu	36	17	8189737	8189737	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153007	exon3	c.A616C	p.S206R	.	.	.
KRBA2	124751	broad.mit.edu	36	17	8213380	8213380	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213597	exon2	c.C1276A	p.P426T	.	.	.
NDEL1	81565	broad.mit.edu	36	17	8292649	8292649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025579	exon5	c.G446A	p.R149Q	.	.	.
NTN1	9423	broad.mit.edu	36	17	9065274	9065274	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004822	exon6	c.G1476T	p.K492N	.	.	.
DHRS7C	201140	broad.mit.edu	36	17	9624026	9624026	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105571	exon3	c.C319A	p.P107T	.	.	.
MYH13	8735	broad.mit.edu	36	17	10189500	10189500	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYH2	4620	broad.mit.edu	36	17	10377685	10377685	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11463831	11463831	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12759941	12759941	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SERPINF1	5176	broad.mit.edu	36	17	1625090	1625090	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16551590	16551590	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SMCR8	140775	broad.mit.edu	36	17	18167113	18167113	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC5A10	125206	broad.mit.edu	36	17	18864184	18864184	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SGSM2	9905	broad.mit.edu	36	17	2217453	2217453	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EFCAB5	374786	broad.mit.edu	36	17	25444089	25444089	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CRLF3	51379	broad.mit.edu	36	17	26148448	26148448	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ACCN1	40	broad.mit.edu	36	17	28463209	28463209	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AP2B1	163	broad.mit.edu	36	17	31008934	31008934	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GGNBP2	79893	broad.mit.edu	36	17	31997730	31997730	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRPV3	162514	broad.mit.edu	36	17	3371089	3371089	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRPV3	162514	broad.mit.edu	36	17	3374232	3374232	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NR1D1	9572	broad.mit.edu	36	17	35506210	35506210	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KRT14	3861	broad.mit.edu	36	17	36994030	36994030	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MBTD1	54799	broad.mit.edu	36	17	46634062	46634062	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CHRNE	1145	broad.mit.edu	36	17	4746162	4746162	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
STXBP4	252983	broad.mit.edu	36	17	50510430	50510430	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TEX14	56155	broad.mit.edu	36	17	54093386	54093386	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DHX40	79665	broad.mit.edu	36	17	55034655	55034655	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
BCAS3	54828	broad.mit.edu	36	17	56356540	56356540	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TBX4	9496	broad.mit.edu	36	17	56912469	56912469	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57117969	57117969	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MARCH10	162333	broad.mit.edu	36	17	58219698	58219698	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TEX2	55852	broad.mit.edu	36	17	59591891	59591891	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	17	59739635	59739635	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60281235	60281235	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AMZ2	51321	broad.mit.edu	36	17	63758715	63758715	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64440012	64440012	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64683137	64683137	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C17orf86	654434	broad.mit.edu	36	17	72597001	72597001	+	RNA	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
BIRC5	332	broad.mit.edu	36	17	73731335	73731335	+	3'UTR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RNF213	57674	broad.mit.edu	36	17	75950295	75950295	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AFG3L2	10939	broad.mit.edu	36	18	12348777	12348777	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006796	exon8	c.G918A	p.K306K	.	.	.
SPIRE1	56907	broad.mit.edu	36	18	12439710	12439710	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128627	exon16	c.C1796T	p.T599M	.	.	.
CEP76	79959	broad.mit.edu	36	18	12691088	12691088	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024899	exon2	c.G88T	p.E30X	.	.	.
SEH1L	81929	broad.mit.edu	36	18	12976900	12976900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013437	exon9	c.G1110A	p.S370S	.	.	.
CEP192	55125	broad.mit.edu	36	18	13104134	13104134	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032142	exon42	c.C7173T	p.I2391I	.	.	.
C18orf19	125228	broad.mit.edu	36	18	13671792	13671792	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152352	exon2	c.T285G	p.V95V	.	.	.
MC5R	4161	broad.mit.edu	36	18	13816667	13816667	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005913	exon1	c.G903T	p.E301D	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875284	13875284	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000529	exon2	c.C234A	p.I78I	.	.	.
ZNF519	162655	broad.mit.edu	36	18	14095755	14095755	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145287	exon3	c.G784T	p.E262X	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16793845	16793845	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005406	exon29	c.G3466A	p.E1156K	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16801023	16801023	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005406	exon27	c.G3205A	p.E1069K	.	.	.
ROCK1	6093	broad.mit.edu	36	18	16825176	16825176	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005406	exon18	c.A2102C	p.K701T	.	.	.
NPC1	4864	broad.mit.edu	36	18	19366223	19366223	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000271	exon25	c.A3778C	p.S1260R	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19783847	19783847	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127718	exon33	c.G4477T	p.G1493C	.	.	.
TTC39C	125488	broad.mit.edu	36	18	19914870	19914870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135993	exon5	c.G784A	p.E262K	.	.	.
CABYR	26256	broad.mit.edu	36	18	19990214	19990214	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153768	exon3	c.G697T	p.E233X	.	.	.
OSBPL1A	114876	broad.mit.edu	36	18	20166958	20166958	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080597	exon7	c.T571G	p.C191G	.	.	.
OSBPL1A	114876	broad.mit.edu	36	18	20202293	20202293	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080597	exon3	c.G163T	p.A55S	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21059937	21059937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.G1943A	p.S648N	.	.	.
ZNF521	25925	broad.mit.edu	36	18	21060177	21060177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015461	exon4	c.C1703T	p.S568L	.	.	.
TAF4B	6875	broad.mit.edu	36	18	22061083	22061083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005640	exon1	c.G188A	p.R63Q	.	.	.
CDH2	1000	broad.mit.edu	36	18	23819516	23819516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon12	c.G1949T	p.R650I	.	.	.
CDH2	1000	broad.mit.edu	36	18	23822588	23822588	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon11	c.G1639T	p.D547Y	.	.	.
CDH2	1000	broad.mit.edu	36	18	23836972	23836972	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon7	c.G1007T	p.G336V	.	.	.
NDC80	10403	broad.mit.edu	36	18	2568011	2568011	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006101	exon5	c.C347A	p.S116Y	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2678712	2678712	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon7	c.G840T	p.E280D	.	.	.
DSG1	1828	broad.mit.edu	36	18	27173973	27173973	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001942	exon11	c.C1674A	p.F558L	.	.	.
DSG1	1828	broad.mit.edu	36	18	27188326	27188326	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001942	exon15	c.C2169T	p.I723I	.	.	.
DSG3	1830	broad.mit.edu	36	18	27298207	27298207	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon9	c.G1135T	p.E379X	.	.	.
DSG3	1830	broad.mit.edu	36	18	27299372	27299372	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001944	exon10	c.T1365G	p.T455T	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2733877	2733877	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon29	c.C3752A	p.S1251Y	.	.	.
DSG2	1829	broad.mit.edu	36	18	27370264	27370264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001943	exon11	c.G1525A	p.D509N	.	.	.
B4GALT6	9331	broad.mit.edu	36	18	27461020	27461020	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004775	exon7	c.T839G	p.I280S	.	.	.
RNF138	51444	broad.mit.edu	36	18	27947798	27947798	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016271	exon4	c.C369A	p.I123I	.	.	.
EMILIN2	84034	broad.mit.edu	36	18	2880629	2880629	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032048	exon4	c.G504T	p.W168C	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29058884	29058884	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198995	exon17	c.C1671A	p.S557S	.	.	.
C18orf34	374864	broad.mit.edu	36	18	29079350	29079350	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198995	exon15	c.T1450G	p.L484V	.	.	.
LPIN2	9663	broad.mit.edu	36	18	2911621	2911621	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014646	exon18	c.G2352T	p.E784D	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29495691	29495691	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030632	exon5	c.C469A	p.L157I	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29568353	29568353	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030632	exon10	c.T1058C	p.F353S	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29573967	29573967	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030632	exon11	c.C2601T	p.S867S	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29577743	29577743	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030632	exon12	c.C3933A	p.G1311G	.	.	.
ASXL3	80816	broad.mit.edu	36	18	29579054	29579054	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030632	exon12	c.G5244A	p.P1748P	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3057390	3057390	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003803	exon38	c.A4928G	p.K1643R	.	.	.
MAPRE2	10982	broad.mit.edu	36	18	30904249	30904249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143827	exon3	c.C179A	p.S60Y	.	.	.
MAPRE2	10982	broad.mit.edu	36	18	30931545	30931545	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143827	exon4	c.G352A	p.V118I	.	.	.
ZSCAN30	100101467	broad.mit.edu	36	18	31088302	31088302	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166012	exon5	c.G595T	p.E199X	.	.	.
ZNF24	7572	broad.mit.edu	36	18	31171253	31171253	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006965	exon4	c.C1048A	p.L350I	.	.	.
ZNF396	252884	broad.mit.edu	36	18	31203322	31203322	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145756	exon4	c.T863C	p.F288S	.	.	.
MYOM1	8736	broad.mit.edu	36	18	3154279	3154279	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003803	exon10	c.C1498T	p.R500X	.	.	.
SLC39A6	25800	broad.mit.edu	36	18	31948125	31948125	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099406	exon6	c.C951T	p.V317V	.	.	.
ELP2	55250	broad.mit.edu	36	18	31998581	31998581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018255	exon18	c.G1907A	p.R636Q	.	.	.
MOCOS	55034	broad.mit.edu	36	18	32029270	32029270	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017947	exon2	c.C195T	p.L65L	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32436715	32436715	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon8	c.A799C	p.T267P	.	.	.
KIAA1328	57536	broad.mit.edu	36	18	32793374	32793374	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020776	exon6	c.C554T	p.A185V	.	.	.
COLEC12	81035	broad.mit.edu	36	18	336877	336877	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130386	exon5	c.C745A	p.L249I	.	.	.
COLEC12	81035	broad.mit.edu	36	18	338071	338071	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130386	exon4	c.A274C	p.K92Q	.	.	.
SYT4	6860	broad.mit.edu	36	18	39104447	39104447	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020783	exon4	c.T1135G	p.S379A	.	.	.
SYT4	6860	broad.mit.edu	36	18	39108125	39108125	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020783	exon2	c.G267T	p.K89N	.	.	.
SYT4	6860	broad.mit.edu	36	18	39108302	39108302	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020783	exon2	c.C90A	p.V30V	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40784437	40784437	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015559	exon4	c.A1134C	p.Q378H	.	.	.
SETBP1	26040	broad.mit.edu	36	18	40897263	40897263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015559	exon6	c.G4393A	p.D1465N	.	.	.
SLC14A2	8170	broad.mit.edu	36	18	41501875	41501875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007163	exon14	c.C1797T	p.S599S	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41762944	41762944	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon13	c.G2442T	p.E814D	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41773588	41773588	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon10	c.T2075C	p.V692A	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41785188	41785188	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon4	c.G1267T	p.E423X	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41925722	41925722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004046	exon3	c.G233A	p.G78D	.	.	.
RNF165	494470	broad.mit.edu	36	18	42290532	42290532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152470	exon8	c.G976A	p.A326T	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42813700	42813700	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016427	exon1	c.A1934C	p.K645T	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42815206	42815206	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016427	exon1	c.A428G	p.H143R	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42838697	42838697	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031303	exon4	c.G210A	p.S70S	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42881363	42881363	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031303	exon15	c.G1390A	p.E464K	.	.	.
DYM	54808	broad.mit.edu	36	18	45160061	45160061	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017653	exon4	c.G259T	p.E87X	.	.	.
CCDC11	220136	broad.mit.edu	36	18	46007913	46007913	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145020	exon8	c.T1381A	p.S461T	.	.	.
CCDC11	220136	broad.mit.edu	36	18	46031931	46031931	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145020	exon4	c.T695A	p.L232Q	.	.	.
CCDC11	220136	broad.mit.edu	36	18	46032088	46032088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145020	exon4	c.C538T	p.R180W	.	.	.
MBD1	4152	broad.mit.edu	36	18	46054011	46054011	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015845	exon11	c.T1298G	p.L433R	.	.	.
MBD1	4152	broad.mit.edu	36	18	46054162	46054162	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015845	exon11	c.C1147T	p.R383X	.	.	.
CXXC1	30827	broad.mit.edu	36	18	46063280	46063280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101654	exon14	c.G1778A	p.R593H	.	.	.
ELAC1	55520	broad.mit.edu	36	18	46764824	46764824	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018696	exon3	c.T518G	p.F173C	.	.	.
DCC	1630	broad.mit.edu	36	18	48686438	48686438	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon3	c.G439T	p.E147X	.	.	.
DCC	1630	broad.mit.edu	36	18	48988114	48988114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon11	c.G1790A	p.R597Q	.	.	.
DCC	1630	broad.mit.edu	36	18	49177741	49177741	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon18	c.C2754A	p.F918L	.	.	.
POLI	11201	broad.mit.edu	36	18	50074200	50074200	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007195	exon10	c.G1588T	p.E530X	.	.	.
POLI	11201	broad.mit.edu	36	18	50074303	50074303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007195	exon10	c.C1691T	p.A564V	.	.	.
POLI	11201	broad.mit.edu	36	18	50074530	50074530	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007195	exon10	c.G1918T	p.E640X	.	.	.
RAB27B	5874	broad.mit.edu	36	18	50695932	50695932	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004163	exon2	c.A118C	p.T40P	.	.	.
RAB27B	5874	broad.mit.edu	36	18	50702659	50702659	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004163	exon4	c.T337G	p.W113G	.	.	.
WDR7	23335	broad.mit.edu	36	18	52490843	52490843	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon2	c.G99A	p.T33T	.	.	.
WDR7	23335	broad.mit.edu	36	18	52501046	52501046	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon5	c.A484C	p.S162R	.	.	.
WDR7	23335	broad.mit.edu	36	18	52536250	52536250	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015285	exon13	c.A1636C	p.S546R	.	.	.
ATP8B1	5205	broad.mit.edu	36	18	53473644	53473644	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005603	exon23	c.C2711T	p.A904V	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5400588	5400588	+	Missense_Mutation	SNP	C	T	T	rs61731698	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012307	exon14	c.G2098A	p.D700N	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5406169	5406169	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012307	exon13	c.C1715A	p.A572D	.	.	.
EPB41L3	23136	broad.mit.edu	36	18	5406244	5406244	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012307	exon13	c.C1640A	p.A547D	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54148971	54148971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015277	exon11	c.G835A	p.E279K	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54353357	54353357	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052947	exon5	c.C5042T	p.A1681V	.	.	.
ALPK2	115701	broad.mit.edu	36	18	54398670	54398670	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052947	exon4	c.C318T	p.C106C	.	.	.
MALT1	10892	broad.mit.edu	36	18	54499512	54499512	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173844	exon2	c.G340T	p.E114X	.	.	.
MALT1	10892	broad.mit.edu	36	18	54527603	54527603	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173844	exon5	c.C663T	p.G221G	.	.	.
SEC11C	90701	broad.mit.edu	36	18	54973970	54973970	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033280	exon4	c.G418T	p.E140X	.	.	.
CPLX4	339302	broad.mit.edu	36	18	55115032	55115032	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181654	exon3	c.G361T	p.D121Y	.	.	.
MC4R	4160	broad.mit.edu	36	18	56189744	56189744	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005912	exon1	c.G819T	p.Q273H	.	.	.
MC4R	4160	broad.mit.edu	36	18	56190141	56190141	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005912	exon1	c.T422A	p.L141H	.	.	.
CDH20	28316	broad.mit.edu	36	18	57372646	57372646	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031891	exon11	c.C2144T	p.T715M	.	.	.
ZCCHC2	54877	broad.mit.edu	36	18	58393279	58393279	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017742	exon13	c.G2985A	p.T995T	.	.	.
TMEM200C	645369	broad.mit.edu	36	18	5880223	5880223	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080209	exon1	c.G1840T	p.E614X	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59461708	59461708	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002974	exon2	c.C84A	p.F28L	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59538232	59538232	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080475	exon6	c.G481T	p.V161F	.	.	.
SERPINB7	8710	broad.mit.edu	36	18	59622688	59622688	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003784	exon8	c.G982T	p.E328X	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59716035	59716035	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002575	exon5	c.C512T	p.S171F	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59721474	59721474	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002575	exon8	c.G1203A	p.K401K	.	.	.
SERPINB10	5273	broad.mit.edu	36	18	59748379	59748379	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005024	exon5	c.A611G	p.E204G	.	.	.
HMSD	284293	broad.mit.edu	36	18	59778488	59778488	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123366	exon4	c.A339C	p.K113N	.	.	.
SERPINB8	5271	broad.mit.edu	36	18	59805247	59805247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002640	exon7	c.G880A	p.E294K	.	.	.
CLUL1	27098	broad.mit.edu	36	18	608037	608037	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199167	exon2	c.C37T	p.L13L	.	.	.
CDH19	28513	broad.mit.edu	36	18	62362221	62362221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021153	exon7	c.C1181T	p.A394V	.	.	.
DSEL	92126	broad.mit.edu	36	18	63330929	63330929	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.A1927G	p.K643E	.	.	.
DSEL	92126	broad.mit.edu	36	18	63331831	63331831	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.C1025A	p.S342Y	.	.	.
CCDC102B	79839	broad.mit.edu	36	18	64655494	64655494	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093729	exon4	c.G514T	p.D172Y	.	.	.
DOK6	220164	broad.mit.edu	36	18	65516708	65516708	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152721	exon5	c.C498A	p.L166L	.	.	.
RTTN	25914	broad.mit.edu	36	18	65822423	65822423	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173630	exon49	c.A6625C	p.N2209H	.	.	.
NETO1	81832	broad.mit.edu	36	18	68601958	68601958	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138966	exon7	c.G803A	p.R268H	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6866132	6866132	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010000	exon9	c.T738G	p.F246L	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6939109	6939109	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon59	c.A8547C	p.K2849N	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6940820	6940820	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon58	c.C8358A	p.V2786V	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6961976	6961976	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon48	c.C6779A	p.S2260Y	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6968322	6968322	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon43	c.C6063T	p.S2021S	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6972583	6972583	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon41	c.G5803T	p.E1935X	.	.	.
CYB5A	1528	broad.mit.edu	36	18	70110043	70110043	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148923	exon1	c.G48T	p.E16D	.	.	.
CNDP1	84735	broad.mit.edu	36	18	70377564	70377564	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032649	exon3	c.G180T	p.E60D	.	.	.
CNDP1	84735	broad.mit.edu	36	18	70396489	70396489	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032649	exon9	c.A1114C	p.K372Q	.	.	.
ZADH2	284273	broad.mit.edu	36	18	71042484	71042484	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175907	exon2	c.C1009A	p.L337M	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71127224	71127225	+	Missense_Mutation	DNP	CG	TA	TA	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005786	exon2	c.739_740TA	.	.	.	NA
LRRC30	339291	broad.mit.edu	36	18	7221664	7221664	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105581	exon1	c.G528A	p.A176A	.	.	.
SALL3	27164	broad.mit.edu	36	18	74858070	74858070	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_171999	exon3	c.C3663T	p.N1221N	.	.	.
NFATC1	4772	broad.mit.edu	36	18	75312020	75312020	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006162	exon5	c.G1668T	p.K556N	.	.	.
TXNL4A	10907	broad.mit.edu	36	18	75834829	75834829	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006701	exon3	c.G273T	p.M91I	.	.	.
ADNP2	22850	broad.mit.edu	36	18	75995205	75995205	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014913	exon4	c.A918T	p.G306G	.	.	.
PTPRM	5797	broad.mit.edu	36	18	7878178	7878178	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon3	c.G271T	p.E91X	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8075801	8075801	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon10	c.A1684G	p.T562A	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8286396	8286396	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon18	c.G2746A	p.D916N	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8370349	8370349	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon27	c.T3803C	p.V1268A	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8710369	8710369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon4	c.G232A	p.E78K	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8774266	8774266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon6	c.G1156A	p.D386N	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8774467	8774467	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon6	c.T1357C	p.Y453H	.	.	.
ADCYAP1	116	broad.mit.edu	36	18	895390	895390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001117	exon1	c.G3T	p.M1I	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9244528	9244528	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083625	exon8	c.C1194A	p.V398V	.	.	.
ANKRD12	23253	broad.mit.edu	36	18	9247181	9247181	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083625	exon8	c.G3847T	p.E1283X	.	.	.
TWSG1	57045	broad.mit.edu	36	18	9386361	9386361	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020648	exon4	c.C307A	p.L103I	.	.	.
PPP4R1	9989	broad.mit.edu	36	18	9567098	9567098	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042388	exon10	c.A1010C	p.K337T	.	.	.
PPP4R1	9989	broad.mit.edu	36	18	9578179	9578179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042388	exon6	c.G493A	p.E165K	.	.	.
RAB31	11031	broad.mit.edu	36	18	9804084	9804084	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006868	exon4	c.A269C	p.K90T	.	.	.
NAPG	8774	broad.mit.edu	36	18	10536407	10536407	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C18orf8	29919	broad.mit.edu	36	18	19343247	19343247	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C18orf8	29919	broad.mit.edu	36	18	19353020	19353020	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19673900	19673900	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LAMA3	3909	broad.mit.edu	36	18	19705383	19705383	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MCART2	147407	broad.mit.edu	36	18	27594632	27594632	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRAPPC8	22878	broad.mit.edu	36	18	27704464	27704464	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF397	84307	broad.mit.edu	36	18	31076431	31076431	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MOCOS	55034	broad.mit.edu	36	18	32047323	32047323	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FLJ35776	649446	broad.mit.edu	36	18	3587204	3587204	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PIK3C3	5289	broad.mit.edu	36	18	37854593	37854593	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ATP5A1	498	broad.mit.edu	36	18	41922063	41922063	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RPL17	6139	broad.mit.edu	36	18	45272048	45272048	+	5'UTR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DCC	1630	broad.mit.edu	36	18	49102530	49102530	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DCC	1630	broad.mit.edu	36	18	49239836	49239836	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NEDD4L	23327	broad.mit.edu	36	18	54169267	54169267	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SEC11C	90701	broad.mit.edu	36	18	54976903	54976903	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDH20	28316	broad.mit.edu	36	18	57368443	57368443	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RTTN	25914	broad.mit.edu	36	18	65987064	65987064	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6970512	6970512	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FBXO15	201456	broad.mit.edu	36	18	69941580	69941580	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7039265	7039265	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C18orf62	284274	broad.mit.edu	36	18	71259718	71259718	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MBP	4155	broad.mit.edu	36	18	72829819	72829819	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
YES1	7525	broad.mit.edu	36	18	741701	741701	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75571324	75571324	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57962626	57962627	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.195_196insA	p.K65fs	.	.	.
OR7A10	390892	broad.mit.edu	36	19	14813379	14813379	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005190	exon1	c.311delT	p.F104fs	.	.	.
ABCA7	10347	broad.mit.edu	36	19	1009663	1009663	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019112	exon38	c.G5196T	p.K1732N	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10111770	10111770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001379	exon32	c.C3710T	p.S1237L	.	.	.
ILF3	3609	broad.mit.edu	36	19	10642702	10642702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153464	exon3	c.C56A	p.S19Y	.	.	.
DNM2	1785	broad.mit.edu	36	19	10773967	10773967	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190716	exon12	c.C1426A	p.L476I	.	.	.
SMARCA4	6597	broad.mit.edu	36	19	10961016	10961016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003072	exon7	c.G1142A	p.R381Q	.	.	.
CCDC159	126075	broad.mit.edu	36	19	11325144	11325144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080503	exon8	c.G585A	p.K195K	.	.	.
CCDC151	115948	broad.mit.edu	36	19	11402756	11402756	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145045	exon2	c.C329A	p.T110N	.	.	.
ZNF441	126068	broad.mit.edu	36	19	11752817	11752817	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152355	exon4	c.A1178C	p.K393T	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778053	11778053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.G285A	p.R95R	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778722	11778722	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.A954C	p.E318D	.	.	.
ZNF440	126070	broad.mit.edu	36	19	11804731	11804731	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152357	exon4	c.G1740T	p.S580S	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11839601	11839601	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152262	exon3	c.G717T	p.E239D	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11839669	11839669	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152262	exon3	c.G785T	p.R262I	.	.	.
ZNF439	90594	broad.mit.edu	36	19	11840154	11840154	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152262	exon3	c.A1270C	p.N424H	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920282	11920282	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144566	exon4	c.A443G	p.D148G	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920434	11920434	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144566	exon4	c.T595G	p.C199G	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11920804	11920804	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144566	exon4	c.G965A	p.R322H	.	.	.
ZNF700	90592	broad.mit.edu	36	19	11921566	11921566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144566	exon4	c.C1727T	p.A576V	.	.	.
ZNF625	90589	broad.mit.edu	36	19	12118020	12118020	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145233	exon4	c.C13A	p.L5I	.	.	.
ZNF799	90576	broad.mit.edu	36	19	12362457	12362457	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080821	exon4	c.G1755T	p.E585D	.	.	.
ZNF799	90576	broad.mit.edu	36	19	12363322	12363322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080821	exon4	c.G890A	p.R297Q	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12403084	12403084	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005815	exon4	c.G902T	p.R301I	.	.	.
ZNF443	10224	broad.mit.edu	36	19	12403152	12403152	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005815	exon4	c.G834T	p.E278D	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12436345	12436345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152601	exon4	c.G1391T	p.R464L	.	.	.
ZNF709	163051	broad.mit.edu	36	19	12436753	12436753	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152601	exon4	c.G983T	p.R328I	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12498516	12498516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144976	exon4	c.G1406T	p.R469I	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12498939	12498939	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144976	exon4	c.A983G	p.E328G	.	.	.
ZNF564	163050	broad.mit.edu	36	19	12499272	12499272	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144976	exon4	c.G650T	p.R217I	.	.	.
ZNF490	57474	broad.mit.edu	36	19	12552324	12552324	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020714	exon5	c.G1565T	p.R522M	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12636720	12636720	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000528	exon4	c.G516T	p.M172I	.	.	.
HOOK2	29911	broad.mit.edu	36	19	12744482	12744482	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100176	exon6	c.G401T	p.R134I	.	.	.
MAST1	22983	broad.mit.edu	36	19	12819856	12819856	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014975	exon7	c.G759T	p.E253D	.	.	.
SYCE2	256126	broad.mit.edu	36	19	12876377	12876377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105578	exon3	c.G235A	p.E79K	.	.	.
MUM1	84939	broad.mit.edu	36	19	1311462	1311462	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032853	exon5	c.G545A	p.R182K	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13275397	13275397	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127222	exon17	c.C2135A	p.A712D	.	.	.
ZSWIM4	65249	broad.mit.edu	36	19	13802063	13802063	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023072	exon13	c.G2169T	p.E723D	.	.	.
CD97	976	broad.mit.edu	36	19	14368207	14368207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025160	exon5	c.G400A	p.V134I	.	.	.
PKN1	5585	broad.mit.edu	36	19	14435934	14435934	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213560	exon12	c.C1718T	p.S573L	.	.	.
EMR3	84658	broad.mit.edu	36	19	14610127	14610127	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032571	exon11	c.C1274T	p.A425V	.	.	.
EMR3	84658	broad.mit.edu	36	19	14626878	14626878	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032571	exon6	c.C493A	p.L165I	.	.	.
EMR3	84658	broad.mit.edu	36	19	14633866	14633866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032571	exon4	c.C264T	p.V88V	.	.	.
ZNF333	84449	broad.mit.edu	36	19	14690331	14690331	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032433	exon12	c.G1192T	p.E398X	.	.	.
OR7C1	26664	broad.mit.edu	36	19	14771661	14771661	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198944	exon1	c.C288T	p.G96G	.	.	.
OR7C2	26658	broad.mit.edu	36	19	14913758	14913758	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012377	exon1	c.T458C	p.V153A	.	.	.
OR7C2	26658	broad.mit.edu	36	19	14913825	14913825	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012377	exon1	c.G525A	p.P175P	.	.	.
SYDE1	85360	broad.mit.edu	36	19	15085460	15085460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033025	exon8	c.G1894A	p.E632K	.	.	.
CYP4F22	126410	broad.mit.edu	36	19	15512471	15512471	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173483	exon8	c.G882A	p.W294X	.	.	.
CYP4F8	11283	broad.mit.edu	36	19	15591531	15591531	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007253	exon5	c.C483T	p.S161S	.	.	.
CYP4F8	11283	broad.mit.edu	36	19	15600620	15600620	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007253	exon12	c.C1363A	p.L455I	.	.	.
OR10H1	26539	broad.mit.edu	36	19	15779780	15779780	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013940	exon1	c.T68A	p.L23H	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15850717	15850717	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082	exon13	c.C1427T	p.A476V	.	.	.
CYP4F2	8529	broad.mit.edu	36	19	15867435	15867435	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082	exon3	c.G224T	p.R75I	.	.	.
OR10H4	126541	broad.mit.edu	36	19	15921354	15921354	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004465	exon1	c.C537A	p.F179L	.	.	.
CALR3	125972	broad.mit.edu	36	19	16462306	16462306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145046	exon3	c.C269T	p.T90I	.	.	.
NWD1	284434	broad.mit.edu	36	19	16721402	16721402	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007525	exon6	c.G949A	p.E317K	.	.	.
SIN3B	23309	broad.mit.edu	36	19	16824895	16824895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015260	exon7	c.C865T	p.R289C	.	.	.
SIN3B	23309	broad.mit.edu	36	19	16835595	16835595	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015260	exon11	c.C1467T	p.D489D	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16899885	16899885	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015692	exon25	c.G3445C	p.A1149P	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16974097	16974097	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015692	exon9	c.A878G	p.E293G	.	.	.
MYO9B	4650	broad.mit.edu	36	19	17125832	17125832	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130065	exon5	c.G1054T	p.E352X	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17234556	17234556	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031941	exon4	c.C447T	p.F149F	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17604591	17604591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon27	c.C3428T	p.A1143V	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17613275	17613275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon20	c.G2563A	p.D855N	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17646522	17646522	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon3	c.G96A	p.K32K	.	.	.
FCHO1	23149	broad.mit.edu	36	19	17738511	17738511	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161358	exon6	c.C228A	p.V76V	.	.	.
B3GNT3	10331	broad.mit.edu	36	19	17783427	17783427	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014256	exon3	c.C615T	p.F205F	.	.	.
IL12RB1	3594	broad.mit.edu	36	19	18041498	18041498	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005535	exon10	c.C1047T	p.V349V	.	.	.
UPF1	5976	broad.mit.edu	36	19	18826416	18826416	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002911	exon9	c.G1163A	p.G388D	.	.	.
UPF1	5976	broad.mit.edu	36	19	18835259	18835259	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002911	exon19	c.C2613A	p.I871I	.	.	.
SUGP2	10147	broad.mit.edu	36	19	19002867	19002867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014884	exon2	c.G14A	p.R5Q	.	.	.
ZNF101	94039	broad.mit.edu	36	19	19651703	19651703	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033204	exon4	c.G905T	p.R302I	.	.	.
ZNF14	7561	broad.mit.edu	36	19	19684039	19684039	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021030	exon4	c.C1051T	p.R351X	.	.	.
ZNF506	440515	broad.mit.edu	36	19	19766835	19766835	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145404	exon3	c.T765C	p.C255C	.	.	.
ZNF506	440515	broad.mit.edu	36	19	19767097	19767097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145404	exon3	c.G503A	p.R168H	.	.	.
ZNF253	56242	broad.mit.edu	36	19	19850320	19850320	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021047	exon2	c.G34T	p.E12X	.	.	.
ZNF682	91120	broad.mit.edu	36	19	19978756	19978756	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033196	exon4	c.C555T	p.H185H	.	.	.
ZNF85	7639	broad.mit.edu	36	19	20923825	20923825	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003429	exon4	c.G665T	p.R222I	.	.	.
ZNF430	80264	broad.mit.edu	36	19	21031712	21031712	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025189	exon5	c.G758T	p.R253I	.	.	.
ZNF714	148206	broad.mit.edu	36	19	21092876	21092876	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182515	exon5	c.C1566T	p.I522I	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21158576	21158576	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133473	exon5	c.G1630T	p.E544X	.	.	.
ZNF708	7562	broad.mit.edu	36	19	21267971	21267971	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021269	exon4	c.A1637G	p.N546S	.	.	.
ZNF708	7562	broad.mit.edu	36	19	21268109	21268109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021269	exon4	c.G1499A	p.G500E	.	.	.
ZNF708	7562	broad.mit.edu	36	19	21268973	21268973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021269	exon4	c.C635T	p.T212M	.	.	.
ZNF429	353088	broad.mit.edu	36	19	21512010	21512010	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001415	exon4	c.A1315G	p.T439A	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21782609	21782609	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003423	exon4	c.C2070A	p.S690S	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21783542	21783542	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003423	exon4	c.T1137C	p.F379F	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21784344	21784344	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003423	exon4	c.T335C	p.V112A	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947036	21947036	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007153	exon4	c.G2640T	p.K880N	.	.	.
ZNF208	7757	broad.mit.edu	36	19	21947855	21947855	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007153	exon4	c.A1821T	p.K607N	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22062961	22062961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033468	exon4	c.G569A	p.R190Q	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063390	22063390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033468	exon4	c.G998A	p.R333Q	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22063657	22063657	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033468	exon4	c.A1265C	p.K422T	.	.	.
ZNF257	113835	broad.mit.edu	36	19	22064005	22064005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033468	exon4	c.C1613T	p.A538V	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22154887	22154887	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001411	exon3	c.T1472C	p.I491T	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22155652	22155652	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001411	exon3	c.G707A	p.R236Q	.	.	.
ZNF676	163223	broad.mit.edu	36	19	22167706	22167706	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001411	exon2	c.A82C	p.K28Q	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22366347	22366347	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098626	exon4	c.G1530T	p.M510I	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22367188	22367188	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098626	exon4	c.G689T	p.R230I	.	.	.
ZNF98	148198	broad.mit.edu	36	19	22367568	22367568	+	Nonsense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098626	exon4	c.T309G	p.Y103X	.	.	.
ZNF492	57615	broad.mit.edu	36	19	22639381	22639381	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020855	exon4	c.G1070T	p.R357I	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22731949	22731949	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon6	c.C2222T	p.T741I	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732631	22732631	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon5	c.G1647T	p.E549D	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22733242	22733242	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon5	c.T1036G	p.F346V	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22733434	22733434	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon5	c.G844T	p.E282X	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22734154	22734154	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon4	c.C460A	p.L154I	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23334412	23334412	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003430	exon4	c.G3209T	p.R1070I	.	.	.
ZNF91	7644	broad.mit.edu	36	19	23336829	23336829	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003430	exon4	c.A792C	p.K264N	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23628377	23628377	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138330	exon4	c.G1198T	p.E400X	.	.	.
ZNF675	171392	broad.mit.edu	36	19	23628975	23628975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138330	exon4	c.C600T	p.C200C	.	.	.
ZNF681	148213	broad.mit.edu	36	19	23729508	23729508	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138286	exon3	c.G183A	p.E61E	.	.	.
GNG7	2788	broad.mit.edu	36	19	2466025	2466025	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052847	exon5	c.T202G	p.L68V	.	.	.
GNA15	2769	broad.mit.edu	36	19	3106875	3106875	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002068	exon5	c.C669T	p.F223F	.	.	.
UQCRFS1	7386	broad.mit.edu	36	19	34390305	34390305	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006003	exon2	c.T815C	p.I272T	.	.	.
DOHH	83475	broad.mit.edu	36	19	3447671	3447671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031304	exon2	c.G142A	p.D48N	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36460472	36460472	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G2067T	p.E689D	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461287	36461287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G1252A	p.A418T	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461599	36461599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G940A	p.A314T	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36461925	36461925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G614A	p.G205D	.	.	.
ZNF507	22847	broad.mit.edu	36	19	37537210	37537210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136156	exon3	c.C1634T	p.S545L	.	.	.
SLC7A9	11136	broad.mit.edu	36	19	38015985	38015985	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126335	exon12	c.T1309C	p.Y437H	.	.	.
CCDC123	84902	broad.mit.edu	36	19	38082686	38082686	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032816	exon16	c.G1792A	p.E598K	.	.	.
RHPN2	85415	broad.mit.edu	36	19	38185699	38185699	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033103	exon8	c.G808A	p.D270N	.	.	.
ATCAY	85300	broad.mit.edu	36	19	3856547	3856547	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033064	exon4	c.C252A	p.F84L	.	.	.
ATCAY	85300	broad.mit.edu	36	19	3861830	3861830	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033064	exon8	c.T809C	p.I270T	.	.	.
KIAA0355	9710	broad.mit.edu	36	19	39513062	39513062	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014686	exon7	c.G1233A	p.A411A	.	.	.
KIAA0355	9710	broad.mit.edu	36	19	39524194	39524194	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014686	exon10	c.C1515T	p.I505I	.	.	.
UBA2	10054	broad.mit.edu	36	19	39634736	39634736	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005499	exon10	c.G882A	p.T294T	.	.	.
UBA2	10054	broad.mit.edu	36	19	39637079	39637079	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005499	exon11	c.G1113T	p.K371N	.	.	.
ZNF30	90075	broad.mit.edu	36	19	40126031	40126031	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099437	exon5	c.T324G	p.S108S	.	.	.
ZNF792	126375	broad.mit.edu	36	19	40142250	40142250	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175872	exon4	c.G349T	p.A117S	.	.	.
ZNF792	126375	broad.mit.edu	36	19	40143732	40143732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175872	exon2	c.G40A	p.V14M	.	.	.
MAG	4099	broad.mit.edu	36	19	40485204	40485204	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199216	exon7	c.G909T	p.K303N	.	.	.
MAG	4099	broad.mit.edu	36	19	40496090	40496090	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199216	exon11	c.G1699T	p.E567X	.	.	.
CD22	933	broad.mit.edu	36	19	40523796	40523796	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185101	exon5	c.C891T	p.N297N	.	.	.
ZBTB32	27033	broad.mit.edu	36	19	40897661	40897661	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014383	exon2	c.G293T	p.R98M	.	.	.
ZBTB32	27033	broad.mit.edu	36	19	40898048	40898048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014383	exon2	c.G680A	p.R227H	.	.	.
MLL4	9757	broad.mit.edu	36	19	40902528	40902528	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014727	exon3	c.C439T	p.R147X	.	.	.
C19orf55	148137	broad.mit.edu	36	19	40947815	40947815	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039887	exon7	c.G667T	p.D223Y	.	.	.
ARHGAP33	115703	broad.mit.edu	36	19	40966969	40966969	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052948	exon16	c.C1477T	p.R493W	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41041527	41041527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199180	exon4	c.G443A	p.S148N	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41043366	41043366	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199180	exon7	c.C885T	p.N295N	.	.	.
APLP1	333	broad.mit.edu	36	19	41054681	41054681	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024807	exon6	c.G753A	p.Q251Q	.	.	.
APLP1	333	broad.mit.edu	36	19	41054771	41054771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024807	exon6	c.C843T	p.V281V	.	.	.
ZNF529	57711	broad.mit.edu	36	19	41729807	41729807	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020951	exon5	c.G1493T	p.R498I	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41809019	41809019	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032825	exon5	c.G380A	p.R127H	.	.	.
ZNF382	84911	broad.mit.edu	36	19	41809586	41809586	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032825	exon5	c.G947A	p.R316Q	.	.	.
EBI3	10148	broad.mit.edu	36	19	4188074	4188074	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005755	exon5	c.C679A	p.L227M	.	.	.
ZNF567	163081	broad.mit.edu	36	19	41902473	41902473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152603	exon4	c.C914T	p.S305L	.	.	.
ZNF567	163081	broad.mit.edu	36	19	41903208	41903208	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152603	exon4	c.G1649T	p.R550I	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42002097	42002097	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206894	exon5	c.G989T	p.R330I	.	.	.
ZNF790	388536	broad.mit.edu	36	19	42002829	42002829	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206894	exon5	c.A257C	p.K86T	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42059733	42059733	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003419	exon3	c.G161T	p.R54I	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060311	42060311	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003419	exon3	c.C739T	p.R247W	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42074707	42074707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037232	exon6	c.G826A	p.A276T	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42091166	42091166	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037232	exon4	c.C132A	p.F44L	.	.	.
ZNF829	374899	broad.mit.edu	36	19	42097896	42097896	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037232	exon2	c.C14A	p.P5H	.	.	.
ZNF568	374900	broad.mit.edu	36	19	42132972	42132972	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198539	exon7	c.G1077T	p.E359D	.	.	.
ZNF420	147923	broad.mit.edu	36	19	42311189	42311189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144689	exon5	c.C1456T	p.R486C	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42334848	42334848	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G1628A	p.R543K	.	.	.
ZNF585A	199704	broad.mit.edu	36	19	42335653	42335653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199126	exon6	c.G823A	p.E275K	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42368988	42368988	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152279	exon5	c.A1291C	p.I431L	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42369982	42369982	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152279	exon5	c.G297T	p.E99D	.	.	.
HKR1	284459	broad.mit.edu	36	19	42545562	42545562	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181786	exon6	c.C1025T	p.S342L	.	.	.
ZNF527	84503	broad.mit.edu	36	19	42572573	42572573	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032453	exon5	c.C1782A	p.V594V	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595439	42595439	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152484	exon6	c.G1961T	p.R654I	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42595746	42595746	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152484	exon6	c.T1654C	p.C552R	.	.	.
ZNF569	148266	broad.mit.edu	36	19	42596486	42596486	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152484	exon6	c.A914G	p.K305R	.	.	.
ZNF571	51276	broad.mit.edu	36	19	42748395	42748395	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016536	exon4	c.G775A	p.A259T	.	.	.
ZNF540	163255	broad.mit.edu	36	19	42795565	42795565	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172226	exon4	c.G1448T	p.R483I	.	.	.
ZFP30	22835	broad.mit.edu	36	19	42818422	42818422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014898	exon6	c.G860A	p.R287Q	.	.	.
ZNF781	163115	broad.mit.edu	36	19	42852732	42852732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152605	exon4	c.G158A	p.R53Q	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42882624	42882624	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032689	exon5	c.G248T	p.R83I	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42921391	42921391	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172691	exon5	c.G1834T	p.E612X	.	.	.
CATSPERG	57828	broad.mit.edu	36	19	43549759	43549759	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021185	exon23	c.A2737G	p.N913D	.	.	.
RASGRP4	115727	broad.mit.edu	36	19	43595152	43595152	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146206	exon10	c.C1113T	p.F371F	.	.	.
RASGRP4	115727	broad.mit.edu	36	19	43602432	43602432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146206	exon6	c.C571T	p.R191C	.	.	.
RYR1	6261	broad.mit.edu	36	19	43671674	43671674	+	Silent	SNP	C	T	T	rs61750975	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000540	exon35	c.C5565T	p.G1855G	.	.	.
RYR1	6261	broad.mit.edu	36	19	43672573	43672573	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000540	exon36	c.G5832A	p.E1944E	.	.	.
RYR1	6261	broad.mit.edu	36	19	43694838	43694838	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000540	exon63	c.C9347T	p.S3116L	.	.	.
RYR1	6261	broad.mit.edu	36	19	43754501	43754501	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000540	exon95	c.C13749A	p.V4583V	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44020931	44020931	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001533	exon10	c.C1503T	p.N501N	.	.	.
UBXN6	80700	broad.mit.edu	36	19	4404935	4404935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025241	exon2	c.G239A	p.R80Q	.	.	.
FBXO27	126433	broad.mit.edu	36	19	44207912	44207912	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178820	exon6	c.C831T	p.I277I	.	.	.
PAPL	390928	broad.mit.edu	36	19	44281445	44281445	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004318	exon4	c.C328T	p.R110C	.	.	.
NCCRP1	342897	broad.mit.edu	36	19	44383188	44383188	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001414	exon6	c.G780A	p.R260R	.	.	.
IL28B	282617	broad.mit.edu	36	19	44426169	44426169	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172139	exon5	c.C534A	p.L178L	.	.	.
GMFG	9535	broad.mit.edu	36	19	44517929	44517929	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004877	exon2	c.A86C	p.N29T	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44641346	44641346	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003169	exon5	c.G368A	p.R123H	.	.	.
DLL3	10683	broad.mit.edu	36	19	44687832	44687832	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203486	exon6	c.G994T	p.D332Y	.	.	.
EID2	163126	broad.mit.edu	36	19	44722278	44722278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153232	exon1	c.C282T	p.S94S	.	.	.
LRG1	116844	broad.mit.edu	36	19	4489472	4489472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052972	exon2	c.G524A	p.R175H	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45115935	45115935	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon4	c.A2108C	p.D703A	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45211432	45211432	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.A415G	p.T139A	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45211921	45211921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G904A	p.E302K	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212257	45212257	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G1240A	p.E414K	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212651	45212651	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178544	exon7	c.G1634T	p.R545I	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212873	45212873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G1856A	p.R619Q	.	.	.
ZNF546	339327	broad.mit.edu	36	19	45212987	45212987	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178544	exon7	c.G1970T	p.R657I	.	.	.
ZNF780B	163131	broad.mit.edu	36	19	45232525	45232525	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005851	exon5	c.C2081T	p.A694V	.	.	.
ZNF780A	284323	broad.mit.edu	36	19	45272546	45272546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010880	exon6	c.G1643A	p.R548Q	.	.	.
ZNF780A	284323	broad.mit.edu	36	19	45273502	45273502	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010880	exon6	c.C687A	p.A229A	.	.	.
ZNF780A	284323	broad.mit.edu	36	19	45273581	45273581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010880	exon6	c.G608A	p.R203Q	.	.	.
AKT2	208	broad.mit.edu	36	19	45439802	45439802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001626	exon6	c.C456T	p.F152F	.	.	.
PLD3	23646	broad.mit.edu	36	19	45574403	45574403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031696	exon11	c.G1067A	p.R356H	.	.	.
SHKBP1	92799	broad.mit.edu	36	19	45788843	45788843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138392	exon18	c.C2014T	p.R672W	.	.	.
LTBP4	8425	broad.mit.edu	36	19	45824768	45824768	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042544	exon31	c.C4234A	p.P1412T	.	.	.
ITPKC	80271	broad.mit.edu	36	19	45927105	45927105	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025194	exon3	c.G1414T	p.D472Y	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46043728	46043728	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000762	exon6	c.C946T	p.L316L	.	.	.
CYP2A6	1548	broad.mit.edu	36	19	46044782	46044782	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000762	exon5	c.C669A	p.F223L	.	.	.
CYP2A7	1549	broad.mit.edu	36	19	46077888	46077888	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000764	exon4	c.C595A	p.L199M	.	.	.
CYP2A13	1553	broad.mit.edu	36	19	46291401	46291401	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000766	exon6	c.C858A	p.F286L	.	.	.
CYP2S1	29785	broad.mit.edu	36	19	46401245	46401245	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030622	exon7	c.A1027C	p.S343R	.	.	.
DPP9	91039	broad.mit.edu	36	19	4653059	4653059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139159	exon9	c.C992T	p.S331L	.	.	.
BCKDHA	593	broad.mit.edu	36	19	46608529	46608529	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164783	exon2	c.G256T	p.G86C	.	.	.
CEACAM7	1087	broad.mit.edu	36	19	46873213	46873213	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006890	exon4	c.G765T	p.M255I	.	.	.
CEACAM5	1048	broad.mit.edu	36	19	46910978	46910978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004363	exon3	c.C673T	p.R225C	.	.	.
CEACAM5	1048	broad.mit.edu	36	19	46916828	46916828	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004363	exon8	c.C1918A	p.L640I	.	.	.
ATP1A3	478	broad.mit.edu	36	19	47177520	47177520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152296	exon11	c.C1411T	p.P471S	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47249851	47249851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002088	exon9	c.G1127A	p.R376H	.	.	.
ZNF574	64763	broad.mit.edu	36	19	47275433	47275433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022752	exon2	c.C835T	p.R279C	.	.	.
PRR19	284338	broad.mit.edu	36	19	47506048	47506048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199285	exon2	c.C472T	p.P158S	.	.	.
TMEM145	284339	broad.mit.edu	36	19	47511244	47511244	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173633	exon7	c.C570T	p.Y190Y	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47532855	47532855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001410	exon7	c.C1301T	p.T434M	.	.	.
CEACAM1	634	broad.mit.edu	36	19	47707593	47707593	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001712	exon7	c.G1404A	p.E468E	.	.	.
PSG3	5671	broad.mit.edu	36	19	47934992	47934992	+	Missense_Mutation	SNP	G	T	T	rs35100282	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021016	exon2	c.C154A	p.L52I	.	.	.
PSG6	5675	broad.mit.edu	36	19	48106765	48106765	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031850	exon3	c.G513T	p.E171D	.	.	.
PSG7	5676	broad.mit.edu	36	19	48125463	48125463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002783	exon3	c.G680A	p.R227H	.	.	.
IRGC	56269	broad.mit.edu	36	19	48915478	48915478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019612	exon2	c.G928A	p.D310N	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043098	49043098	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G505T	p.G169X	.	.	.
ZNF283	284349	broad.mit.edu	36	19	49043861	49043861	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181845	exon7	c.G1268T	p.R423I	.	.	.
ZNF404	342908	broad.mit.edu	36	19	49068857	49068857	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033719	exon2	c.T1340G	p.L447R	.	.	.
ZNF221	7638	broad.mit.edu	36	19	49162921	49162921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013359	exon6	c.G1427A	p.R476K	.	.	.
ZNF230	7773	broad.mit.edu	36	19	49205114	49205114	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006300	exon4	c.G181T	p.E61X	.	.	.
ZNF222	7673	broad.mit.edu	36	19	49228102	49228102	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129996	exon4	c.T555C	p.H185H	.	.	.
ZNF222	7673	broad.mit.edu	36	19	49228513	49228513	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129996	exon4	c.G966T	p.E322D	.	.	.
ZNF224	7767	broad.mit.edu	36	19	49304067	49304067	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013398	exon6	c.C1914T	p.F638F	.	.	.
ZNF226	7769	broad.mit.edu	36	19	49372487	49372487	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032372	exon6	c.G1232T	p.R411I	.	.	.
MARK4	57787	broad.mit.edu	36	19	50458261	50458261	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199867	exon3	c.G303A	p.Q101Q	.	.	.
GPR4	2828	broad.mit.edu	36	19	50786412	50786412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005282	exon2	c.C553T	p.R185W	.	.	.
SNRPD2	6633	broad.mit.edu	36	19	50883490	50883490	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004597	exon2	c.C177T	p.F59F	.	.	.
SYMPK	8189	broad.mit.edu	36	19	51022688	51022688	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004819	exon16	c.G2101T	p.D701Y	.	.	.
SYMPK	8189	broad.mit.edu	36	19	51039167	51039167	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004819	exon8	c.T808C	p.F270L	.	.	.
SYMPK	8189	broad.mit.edu	36	19	51043930	51043930	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004819	exon6	c.A344G	p.N115S	.	.	.
HIF3A	64344	broad.mit.edu	36	19	51517062	51517062	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152795	exon10	c.C1334T	p.S445L	.	.	.
PPP5C	5536	broad.mit.edu	36	19	51582230	51582230	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006247	exon8	c.C945T	p.F315F	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52116120	52116120	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004491	exon1	c.G2348A	p.R783Q	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52117205	52117205	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004491	exon1	c.C3433T	p.R1145X	.	.	.
CCDC9	26093	broad.mit.edu	36	19	52455691	52455691	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015603	exon5	c.A217G	p.N73D	.	.	.
EHD2	30846	broad.mit.edu	36	19	52936429	52936429	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014601	exon6	c.C1560T	p.H520H	.	.	.
TPRX1	284355	broad.mit.edu	36	19	52997051	52997051	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198479	exon2	c.C1029A	p.F343L	.	.	.
PLA2G4C	8605	broad.mit.edu	36	19	53262868	53262868	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159322	exon13	c.A1124G	p.Y375C	.	.	.
LIG1	3978	broad.mit.edu	36	19	53352207	53352207	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000234	exon5	c.G246T	p.K82N	.	.	.
ZNF114	163071	broad.mit.edu	36	19	53481201	53481201	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153608	exon5	c.A508G	p.T170A	.	.	.
KDELR1	10945	broad.mit.edu	36	19	53579428	53579428	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006801	exon4	c.C475T	p.R159C	.	.	.
GRIN2D	2906	broad.mit.edu	36	19	53637226	53637226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000836	exon12	c.C2448T	p.I816I	.	.	.
CA11	770	broad.mit.edu	36	19	53834660	53834660	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001217	exon6	c.C598T	p.R200C	.	.	.
FUT1	2523	broad.mit.edu	36	19	53945786	53945786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000148	exon4	c.G565A	p.D189N	.	.	.
HRC	3270	broad.mit.edu	36	19	54349521	54349521	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002152	exon1	c.C786A	p.V262V	.	.	.
SLC6A16	28968	broad.mit.edu	36	19	54485818	54485818	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014037	exon11	c.G1797A	p.T599T	.	.	.
CD37	951	broad.mit.edu	36	19	54530800	54530800	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001774	exon2	c.C87A	p.I29I	.	.	.
TEAD2	8463	broad.mit.edu	36	19	54536403	54536403	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003598	exon12	c.T1334C	p.V445A	.	.	.
TEAD2	8463	broad.mit.edu	36	19	54542262	54542262	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003598	exon9	c.C906A	p.F302L	.	.	.
TSKS	60385	broad.mit.edu	36	19	54939389	54939389	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021733	exon8	c.C1272T	p.F424F	.	.	.
TSKS	60385	broad.mit.edu	36	19	54958157	54958157	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021733	exon1	c.T160C	p.S54P	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55147390	55147390	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135163	exon8	c.C1437T	p.F479F	.	.	.
SIGLEC11	114132	broad.mit.edu	36	19	55154116	55154116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135163	exon6	c.C1088T	p.S363F	.	.	.
MYH14	79784	broad.mit.edu	36	19	55444812	55444812	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077186	exon14	c.T1576C	p.Y526H	.	.	.
SAFB2	9667	broad.mit.edu	36	19	5555658	5555658	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014649	exon11	c.G1495A	p.E499K	.	.	.
MYBPC2	4606	broad.mit.edu	36	19	55638583	55638583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004533	exon10	c.G923A	p.G308D	.	.	.
LRRC4B	94030	broad.mit.edu	36	19	55714173	55714173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080457	exon3	c.C609T	p.F203F	.	.	.
KLK1	3816	broad.mit.edu	36	19	56014271	56014271	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002257	exon5	c.G780T	p.E260D	.	.	.
KLK1	3816	broad.mit.edu	36	19	56015041	56015041	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002257	exon4	c.A559C	p.K187Q	.	.	.
KLK1	3816	broad.mit.edu	36	19	56016926	56016926	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002257	exon2	c.G60A	p.P20P	.	.	.
KLK3	354	broad.mit.edu	36	19	56051411	56051411	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030048	exon2	c.C150T	p.C50C	.	.	.
KLK4	9622	broad.mit.edu	36	19	56104479	56104479	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004917	exon2	c.C65A	p.S22X	.	.	.
SIGLEC9	27180	broad.mit.edu	36	19	56321160	56321160	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198558	exon3	c.G711A	p.Q237Q	.	.	.
SIGLEC7	27036	broad.mit.edu	36	19	56337744	56337744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014385	exon1	c.G306T	p.Q102H	.	.	.
ETFB	2109	broad.mit.edu	36	19	56548323	56548323	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014763	exon2	c.G523T	p.D175Y	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56608843	56608843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171159	exon9	c.C1297T	p.P433S	.	.	.
CEACAM18	729767	broad.mit.edu	36	19	56675455	56675455	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080405	exon3	c.A292C	p.T98P	.	.	.
SIGLEC5	8778	broad.mit.edu	36	19	56807348	56807348	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003830	exon9	c.A1604G	p.D535G	.	.	.
SIGLEC5	8778	broad.mit.edu	36	19	56824572	56824572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003830	exon3	c.C551T	p.A184V	.	.	.
ZNF577	84765	broad.mit.edu	36	19	57068186	57068186	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032679	exon7	c.G869T	p.R290I	.	.	.
ZNF350	59348	broad.mit.edu	36	19	57160407	57160407	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021632	exon5	c.G1111T	p.E371X	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188104	57188104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198480	exon6	c.G2037A	p.P679P	.	.	.
ZNF615	284370	broad.mit.edu	36	19	57188714	57188714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198480	exon6	c.G1427A	p.R476Q	.	.	.
ZNF614	80110	broad.mit.edu	36	19	57211659	57211659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025040	exon5	c.G1004A	p.R335Q	.	.	.
ZNF614	80110	broad.mit.edu	36	19	57213124	57213124	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025040	exon4	c.G187T	p.G63X	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57229902	57229902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014650	exon5	c.G842A	p.R281Q	.	.	.
ZNF432	9668	broad.mit.edu	36	19	57230248	57230248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014650	exon5	c.C496T	p.L166F	.	.	.
ZNF616	90317	broad.mit.edu	36	19	57310087	57310087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178523	exon4	c.G2142T	p.E714D	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57351572	57351572	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102657	exon5	c.A1176G	p.G392G	.	.	.
ZNF836	162962	broad.mit.edu	36	19	57352460	57352460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102657	exon5	c.G288T	p.Q96H	.	.	.
ZNF480	147657	broad.mit.edu	36	19	57517487	57517487	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144684	exon5	c.G1172T	p.R391I	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57548777	57548777	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161425	exon4	c.G94A	p.E32K	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57561198	57561198	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161425	exon6	c.G755T	p.R252I	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57561569	57561569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161425	exon6	c.G1126A	p.E376K	.	.	.
ZNF880	400713	broad.mit.edu	36	19	57579473	57579473	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145434	exon4	c.C828A	p.V276V	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57611639	57611639	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032423	exon7	c.G1722T	p.K574N	.	.	.
ZNF534	147658	broad.mit.edu	36	19	57632844	57632844	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143938	exon4	c.A319G	p.N107D	.	.	.
ZNF808	388558	broad.mit.edu	36	19	57750497	57750497	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039886	exon5	c.G2516T	p.R839I	.	.	.
ZNF83	55769	broad.mit.edu	36	19	57809378	57809378	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105550	exon5	c.G252T	p.E84D	.	.	.
ZNF611	81856	broad.mit.edu	36	19	57900460	57900460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161499	exon6	c.G1660T	p.A554S	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57960848	57960848	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.G1973T	p.R658I	.	.	.
ZNF600	162966	broad.mit.edu	36	19	57961829	57961829	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198457	exon3	c.A992G	p.K331R	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57995114	57995114	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006969	exon4	c.G1796T	p.R599I	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57995329	57995329	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006969	exon4	c.A1581T	p.E527D	.	.	.
ZNF28	7576	broad.mit.edu	36	19	57996472	57996472	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006969	exon4	c.G438A	p.S146S	.	.	.
ZNF468	90333	broad.mit.edu	36	19	58036690	58036690	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199132	exon5	c.C510A	p.S170S	.	.	.
ZNF320	162967	broad.mit.edu	36	19	58075902	58075902	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207333	exon4	c.G1289T	p.R430I	.	.	.
ZNF320	162967	broad.mit.edu	36	19	58076092	58076092	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207333	exon4	c.C1099T	p.R367W	.	.	.
ZNF816	125893	broad.mit.edu	36	19	58145785	58145785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031665	exon5	c.G1055A	p.R352Q	.	.	.
ZNF347	84671	broad.mit.edu	36	19	58336303	58336303	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032584	exon5	c.T1590G	p.N530K	.	.	.
ZNF347	84671	broad.mit.edu	36	19	58337106	58337106	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032584	exon5	c.T787G	p.S263A	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58360021	58360021	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024733	exon4	c.A1534C	p.K512Q	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58360457	58360457	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024733	exon4	c.A1098C	p.R366R	.	.	.
ZNF665	79788	broad.mit.edu	36	19	58361046	58361046	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024733	exon4	c.C509A	p.S170Y	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432085	58432085	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon5	c.A1707G	p.K569K	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432340	58432340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon5	c.G1452T	p.E484D	.	.	.
VN1R2	317701	broad.mit.edu	36	19	58453813	58453813	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173856	exon1	c.G373T	p.D125Y	.	.	.
VN1R4	317703	broad.mit.edu	36	19	58462499	58462499	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173857	exon1	c.C232A	p.L78I	.	.	.
BIRC8	112401	broad.mit.edu	36	19	58484995	58484995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033341	exon1	c.C445A	p.L149I	.	.	.
ZNF761	388561	broad.mit.edu	36	19	58651030	58651030	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008401	exon6	c.G1458T	p.E486D	.	.	.
RANBP3	8498	broad.mit.edu	36	19	5874291	5874291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003624	exon13	c.G1108A	p.A370T	.	.	.
ZNF331	55422	broad.mit.edu	36	19	58772662	58772662	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079906	exon6	c.G1036A	p.E346K	.	.	.
ZNF331	55422	broad.mit.edu	36	19	58772814	58772814	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079906	exon6	c.G1188A	p.S396S	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59005077	59005077	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144687	exon3	c.T1648C	p.F550L	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59006288	59006288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144687	exon3	c.G437A	p.R146H	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59093545	59093545	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002739	exon11	c.G1132A	p.A378T	.	.	.
VSTM1	284415	broad.mit.edu	36	19	59253460	59253460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198481	exon3	c.G267T	p.K89N	.	.	.
MBOAT7	79143	broad.mit.edu	36	19	59369881	59369881	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146056	exon6	c.A869G	p.Y290C	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59452169	59452169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081442	exon3	c.C350T	p.A117V	.	.	.
LILRA5	353514	broad.mit.edu	36	19	59514566	59514566	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181986	exon4	c.C606A	p.C202X	.	.	.
LAIR1	3903	broad.mit.edu	36	19	59558722	59558722	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021706	exon9	c.G780T	p.E260D	.	.	.
LENG8	114823	broad.mit.edu	36	19	59661150	59661150	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052925	exon14	c.G1959T	p.E653D	.	.	.
LAIR2	3904	broad.mit.edu	36	19	59711055	59711055	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002288	exon3	c.G208T	p.D70Y	.	.	.
LILRA1	11024	broad.mit.edu	36	19	59797990	59797990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006863	exon4	c.C119T	p.T40I	.	.	.
LILRA1	11024	broad.mit.edu	36	19	59798609	59798609	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006863	exon5	c.C591A	p.C197X	.	.	.
LILRA1	11024	broad.mit.edu	36	19	59799015	59799015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006863	exon6	c.G761A	p.R254K	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59840067	59840067	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006669	exon16	c.A1879G	p.T627A	.	.	.
LILRB4	11006	broad.mit.edu	36	19	59866322	59866322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006847	exon1	c.C25T	p.L9F	.	.	.
LILRB4	11006	broad.mit.edu	36	19	59869509	59869509	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006847	exon8	c.G881A	p.R294K	.	.	.
KIR2DL4	3805	broad.mit.edu	36	19	60008097	60008097	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002255	exon3	c.C114T	p.S38S	.	.	.
FCAR	2204	broad.mit.edu	36	19	60088556	60088556	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002000	exon3	c.C168A	p.Y56X	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60141248	60141248	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139176	exon5	c.G2021T	p.S674I	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60141377	60141377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127255	exon5	c.G1976A	p.R659H	.	.	.
NLRP7	199713	broad.mit.edu	36	19	60142429	60142429	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139176	exon4	c.G1570A	p.G524S	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60184843	60184843	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174083	exon6	c.C375T	p.V125V	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60193252	60193252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174083	exon10	c.C2348T	p.A783V	.	.	.
PTPRH	5794	broad.mit.edu	36	19	60401983	60401983	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002842	exon8	c.C1530A	p.V510V	.	.	.
RPL28	6158	broad.mit.edu	36	19	60591217	60591217	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136135	exon4	c.G313A	p.D105N	.	.	.
NLRP9	338321	broad.mit.edu	36	19	60941448	60941448	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176820	exon1	c.G105A	p.E35E	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061385	61061385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.G814A	p.E272K	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061550	61061550	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.C979A	p.L327I	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061649	61061649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.G1078A	p.D360N	.	.	.
NLRP4	147945	broad.mit.edu	36	19	61061935	61061935	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134444	exon3	c.T1364C	p.I455T	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61115332	61115332	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176810	exon5	c.G1663A	p.E555K	.	.	.
NLRP13	126204	broad.mit.edu	36	19	61135292	61135292	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176810	exon1	c.G198T	p.L66F	.	.	.
NLRP5	126206	broad.mit.edu	36	19	61235898	61235898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153447	exon8	c.C2386T	p.R796W	.	.	.
ZSCAN5B	342933	broad.mit.edu	36	19	61393089	61393089	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080456	exon4	c.T1407C	p.C469C	.	.	.
ACSBG2	81616	broad.mit.edu	36	19	6141668	6141668	+	Nonstop_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030924	exon14	c.A2001C	p.X667C	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61626737	61626737	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159860	exon5	c.G898T	p.E300X	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61626870	61626870	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159860	exon5	c.G1031T	p.R344I	.	.	.
ZNF583	147949	broad.mit.edu	36	19	61627206	61627206	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159860	exon5	c.G1367T	p.R456I	.	.	.
ZNF667	63934	broad.mit.edu	36	19	61645190	61645190	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022103	exon5	c.C986A	p.P329H	.	.	.
ZFP28	140612	broad.mit.edu	36	19	61758296	61758296	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020828	exon8	c.G2330T	p.R777I	.	.	.
ZNF470	388566	broad.mit.edu	36	19	61781531	61781531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001668	exon6	c.G1922T	p.R641I	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61868396	61868396	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005850	exon2	c.G49T	p.A17S	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61977902	61977902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146326	exon12	c.C1550A	p.S517Y	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018233	62018233	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146184	exon9	c.G3389A	p.S1130N	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018761	62018761	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146184	exon9	c.C2861A	p.S954Y	.	.	.
PEG3	5178	broad.mit.edu	36	19	62024898	62024898	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146184	exon6	c.C602T	p.A201V	.	.	.
USP29	57663	broad.mit.edu	36	19	62332098	62332098	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020903	exon4	c.C243A	p.F81L	.	.	.
USP29	57663	broad.mit.edu	36	19	62332525	62332525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020903	exon4	c.C670T	p.L224F	.	.	.
USP29	57663	broad.mit.edu	36	19	62332761	62332761	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020903	exon4	c.G906A	p.S302S	.	.	.
ZIM3	114026	broad.mit.edu	36	19	62338463	62338463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052882	exon5	c.G1054A	p.D352N	.	.	.
DUXA	503835	broad.mit.edu	36	19	62362443	62362443	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012729	exon3	c.C196T	p.R66X	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62414948	62414948	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003417	exon4	c.T671G	p.I224S	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415860	62415860	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003417	exon4	c.G1583A	p.R528Q	.	.	.
AURKC	6795	broad.mit.edu	36	19	62435243	62435243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001015879	exon3	c.C78T	p.I26I	.	.	.
ZNF543	125919	broad.mit.edu	36	19	62531604	62531604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213598	exon4	c.G962A	p.R321Q	.	.	.
ZNF304	57343	broad.mit.edu	36	19	62559963	62559963	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020657	exon3	c.G914T	p.R305I	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62602299	62602299	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172773	exon4	c.G868T	p.E290X	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62602390	62602390	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172773	exon4	c.C959T	p.P320L	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62602471	62602471	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172773	exon4	c.G1040T	p.R347I	.	.	.
ZNF548	147694	broad.mit.edu	36	19	62602739	62602739	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172773	exon4	c.C1308T	p.S436S	.	.	.
ZNF17	7565	broad.mit.edu	36	19	62624477	62624477	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006959	exon3	c.G1805T	p.R602I	.	.	.
ZNF749	388567	broad.mit.edu	36	19	62647202	62647202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023561	exon3	c.C874T	p.L292F	.	.	.
ZNF749	388567	broad.mit.edu	36	19	62647498	62647498	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023561	exon3	c.C1170A	p.F390L	.	.	.
ZNF749	388567	broad.mit.edu	36	19	62647968	62647968	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023561	exon3	c.A1640C	p.K547T	.	.	.
ZNF749	388567	broad.mit.edu	36	19	62648366	62648366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023561	exon3	c.C2038T	p.R680C	.	.	.
ZNF772	400720	broad.mit.edu	36	19	62678946	62678946	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024596	exon3	c.C93T	p.D31D	.	.	.
ZNF549	256051	broad.mit.edu	36	19	62741317	62741317	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199295	exon4	c.G1133A	p.R378Q	.	.	.
ZNF416	55659	broad.mit.edu	36	19	62775877	62775877	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017879	exon4	c.A1207T	p.I403F	.	.	.
ZIK1	284307	broad.mit.edu	36	19	62793242	62793242	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010879	exon4	c.C251A	p.S84Y	.	.	.
ZIK1	284307	broad.mit.edu	36	19	62793605	62793605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010879	exon4	c.G614A	p.R205H	.	.	.
ZNF530	348327	broad.mit.edu	36	19	62809411	62809411	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020880	exon3	c.G706T	p.E236X	.	.	.
ZNF211	10520	broad.mit.edu	36	19	62844934	62844934	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198855	exon3	c.G1268T	p.R423I	.	.	.
ZNF211	10520	broad.mit.edu	36	19	62845341	62845341	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198855	exon3	c.C1675A	p.H559N	.	.	.
ZSCAN4	201516	broad.mit.edu	36	19	62879364	62879364	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152677	exon3	c.A39C	p.P13P	.	.	.
ZSCAN4	201516	broad.mit.edu	36	19	62879429	62879429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152677	exon3	c.G104T	p.R35I	.	.	.
ZNF551	90233	broad.mit.edu	36	19	62890603	62890603	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138347	exon3	c.G1100T	p.R367I	.	.	.
ZNF551	90233	broad.mit.edu	36	19	62890832	62890832	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138347	exon3	c.C1329A	p.F443L	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62905549	62905549	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085384	exon3	c.T580C	p.C194R	.	.	.
ZNF154	7710	broad.mit.edu	36	19	62908131	62908131	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085384	exon2	c.T62C	p.V21A	.	.	.
ZNF776	284309	broad.mit.edu	36	19	62957328	62957328	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173632	exon3	c.C1018T	p.R340X	.	.	.
ZNF586	54807	broad.mit.edu	36	19	62982136	62982136	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017652	exon3	c.G369T	p.E123D	.	.	.
ZNF256	10172	broad.mit.edu	36	19	63145261	63145261	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005773	exon3	c.G727T	p.E243X	.	.	.
ZNF606	80095	broad.mit.edu	36	19	63182357	63182357	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025027	exon7	c.A1503G	p.G501G	.	.	.
ZSCAN1	284312	broad.mit.edu	36	19	63256709	63256709	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182572	exon6	c.C705A	p.I235I	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63331595	63331595	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024620	exon4	c.G1088T	p.R363M	.	.	.
ZNF329	79673	broad.mit.edu	36	19	63331931	63331931	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024620	exon4	c.G752T	p.R251I	.	.	.
ZNF132	7691	broad.mit.edu	36	19	63636886	63636886	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003433	exon3	c.C1737A	p.F579L	.	.	.
ZNF324	25799	broad.mit.edu	36	19	63674404	63674404	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014347	exon4	c.G733A	p.E245K	.	.	.
SLC27A5	10998	broad.mit.edu	36	19	63703852	63703852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012254	exon5	c.G1216A	p.A406T	.	.	.
TUBB4	10382	broad.mit.edu	36	19	6446415	6446415	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006087	exon4	c.G1095A	p.A365A	.	.	.
C3	718	broad.mit.edu	36	19	6631227	6631227	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon36	c.C4398A	p.Y1466X	.	.	.
C3	718	broad.mit.edu	36	19	6641655	6641655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon27	c.C3474T	p.C1158C	.	.	.
C3	718	broad.mit.edu	36	19	6660782	6660782	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon14	c.G1758T	p.E586D	.	.	.
GPR108	56927	broad.mit.edu	36	19	6687634	6687634	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080452	exon2	c.G209A	p.G70D	.	.	.
SH2D3A	10045	broad.mit.edu	36	19	6705673	6705673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005490	exon6	c.C1051T	p.L351F	.	.	.
VAV1	7409	broad.mit.edu	36	19	6787519	6787519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005428	exon20	c.G1854A	p.R618R	.	.	.
VAV1	7409	broad.mit.edu	36	19	6803999	6803999	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005428	exon25	c.G2241T	p.Q747H	.	.	.
INSR	3643	broad.mit.edu	36	19	7079909	7079909	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon15	c.C2899A	p.L967I	.	.	.
INSR	3643	broad.mit.edu	36	19	7117391	7117391	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon8	c.C1635T	p.F545F	.	.	.
PNPLA6	10908	broad.mit.edu	36	19	7512889	7512889	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166114	exon10	c.A1188G	p.T396T	.	.	.
PNPLA6	10908	broad.mit.edu	36	19	7529982	7529982	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166114	exon28	c.G3644A	p.R1215H	.	.	.
CLEC4M	10332	broad.mit.edu	36	19	7737627	7737627	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144904	exon5	c.C717T	p.H239H	.	.	.
LRRC8E	80131	broad.mit.edu	36	19	7866608	7866608	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025061	exon2	c.C120A	p.V40V	.	.	.
LRRC8E	80131	broad.mit.edu	36	19	7870496	7870496	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025061	exon3	c.C1089T	p.F363F	.	.	.
TIMM44	10469	broad.mit.edu	36	19	7904827	7904827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006351	exon6	c.G605A	p.R202Q	.	.	.
ELAVL1	1994	broad.mit.edu	36	19	7938484	7938484	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001419	exon5	c.C621T	p.F207F	.	.	.
FBN3	84467	broad.mit.edu	36	19	8042996	8042996	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032447	exon62	c.A8024G	p.E2675G	.	.	.
FBN3	84467	broad.mit.edu	36	19	8058975	8058975	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032447	exon51	c.C6465A	p.G2155G	.	.	.
ELANE	1991	broad.mit.edu	36	19	806986	806986	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001972	exon5	c.A626T	p.N209I	.	.	.
FBN3	84467	broad.mit.edu	36	19	8081808	8081808	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032447	exon33	c.C4254T	p.S1418S	.	.	.
LASS4	79603	broad.mit.edu	36	19	8227862	8227862	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024552	exon9	c.C642T	p.F214F	.	.	.
PRAM1	84106	broad.mit.edu	36	19	8468678	8468678	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032152	exon4	c.G1546A	p.D516N	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8518995	8518995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon12	c.C1194T	p.F398F	.	.	.
ADAMTS10	81794	broad.mit.edu	36	19	8557510	8557510	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030957	exon20	c.C2335T	p.R779X	.	.	.
MUC16	94025	broad.mit.edu	36	19	8855424	8855424	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon64	c.A41468G	p.Q13823R	.	.	.
MUC16	94025	broad.mit.edu	36	19	8899096	8899096	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon8	c.C36180A	p.S12060S	.	.	.
MUC16	94025	broad.mit.edu	36	19	8907860	8907860	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.A34771G	p.T11591A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8907998	8907998	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.C34633A	p.L11545M	.	.	.
MUC16	94025	broad.mit.edu	36	19	8908191	8908191	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.G34440A	p.E11480E	.	.	.
MUC16	94025	broad.mit.edu	36	19	8911067	8911067	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon5	c.G31564A	p.E10522K	.	.	.
MUC16	94025	broad.mit.edu	36	19	8917181	8917181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G31265A	p.R10422Q	.	.	.
MUC16	94025	broad.mit.edu	36	19	8918842	8918842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G29604A	p.P9868P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8919483	8919483	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.A28963G	p.T9655A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920422	8920422	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.T28024C	p.S9342P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920881	8920881	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.T27565C	p.L9189L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8921517	8921517	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G26929T	p.D8977Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8921948	8921948	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G26498A	p.S8833N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8922323	8922323	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C26123A	p.S8708Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8922629	8922629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G25817A	p.R8606H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8923923	8923923	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.T24523C	p.S8175P	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928487	8928487	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C19959A	p.F6653L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8929997	8929997	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C18449A	p.S6150Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8933831	8933831	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.T14615A	p.I4872N	.	.	.
MUC16	94025	broad.mit.edu	36	19	8938467	8938467	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.A9979G	p.T3327A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8938775	8938775	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.T9671C	p.V3224A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8944660	8944660	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.G8155T	p.E2719X	.	.	.
MUC16	94025	broad.mit.edu	36	19	8948546	8948546	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.C4269A	p.T1423T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8949784	8949784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.G3031A	p.A1011T	.	.	.
OR7G2	390882	broad.mit.edu	36	19	9074100	9074100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005193	exon1	c.G883A	p.A295T	.	.	.
ZNF699	374879	broad.mit.edu	36	19	9274107	9274107	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198535	exon2	c.G122T	p.R41I	.	.	.
ZNF559	84527	broad.mit.edu	36	19	9314161	9314161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032497	exon6	c.G1034A	p.R345Q	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9438789	9438789	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152476	exon10	c.C1834T	p.R612C	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9439758	9439758	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152476	exon10	c.G865T	p.D289Y	.	.	.
ZNF560	147741	broad.mit.edu	36	19	9445928	9445928	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152476	exon4	c.G104T	p.R35I	.	.	.
ZNF121	7675	broad.mit.edu	36	19	9537710	9537710	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008727	exon4	c.G1079T	p.R360I	.	.	.
ZNF846	162993	broad.mit.edu	36	19	9729897	9729897	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077624	exon6	c.G856T	p.E286X	.	.	.
OLFM2	93145	broad.mit.edu	36	19	9826191	9826191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058164	exon6	c.G1036A	p.V346M	.	.	.
ICAM3	3385	broad.mit.edu	36	19	10310350	10310350	+	Intron	SNP	C	T	T	rs2304239	byFrequency;byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CNN1	1264	broad.mit.edu	36	19	11521622	11521622	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF833P	401898	broad.mit.edu	36	19	11657230	11657230	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZNF878	729747	broad.mit.edu	36	19	12018584	12018584	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EMR3	84658	broad.mit.edu	36	19	14626792	14626792	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NOTCH3	4854	broad.mit.edu	36	19	15156104	15156104	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CYP4F12	66002	broad.mit.edu	36	19	15645549	15645549	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NWD1	284434	broad.mit.edu	36	19	16763440	16763440	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16992137	16992137	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HAUS8	93323	broad.mit.edu	36	19	17040905	17040905	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYO9B	4650	broad.mit.edu	36	19	17169594	17169594	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM161A	54929	broad.mit.edu	36	19	19104151	19104151	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21142210	21142210	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DOT1L	84444	broad.mit.edu	36	19	2136843	2136843	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35739897	35739897	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41040075	41040075	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CATSPERG	57828	broad.mit.edu	36	19	43547540	43547540	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44020067	44020067	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MIA	8190	broad.mit.edu	36	19	45973425	45973425	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF137P	7696	broad.mit.edu	36	19	57792213	57792213	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	19	58889551	58889551	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	19	58916186	58916186	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59084697	59084697	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59095295	59095295	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIR3DX1	90011	broad.mit.edu	36	19	59737018	59737018	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NLRP11	204801	broad.mit.edu	36	19	60989055	60989055	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF773	374928	broad.mit.edu	36	19	62716240	62716240	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C3	718	broad.mit.edu	36	19	6637914	6637914	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CD209	30835	broad.mit.edu	36	19	7718184	7718184	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF559	84527	broad.mit.edu	36	19	9313360	9313360	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MIA3	375056	broad.mit.edu	36	1	220870099	220870100	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon4	c.2914_2915insA	p.E972fs	.	.	.
KIAA0754	643314	broad.mit.edu	36	1	39651623	39651624	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015038	exon1	c.3099_3100insC	p.V1033fs	.	.	.
MIER1	57708	broad.mit.edu	36	1	67214913	67214914	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077700	exon12	c.1149_1150insA	p.W383fs	.	.	.
OR2L3	391192	broad.mit.edu	36	1	246291000	246291000	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004687	exon1	c.394delC	p.P132fs	.	.	.
AGL	178	broad.mit.edu	36	1	100119523	100119523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000645	exon14	c.G2038A	p.G680S	.	.	.
CCDC76	54482	broad.mit.edu	36	1	100379012	100379012	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019083	exon7	c.A518G	p.N173S	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10085734	10085734	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105562	exon5	c.G577T	p.E193X	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103116202	103116202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080630	exon65	c.G5034A	p.K1678K	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103119857	103119857	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080630	exon63	c.T4676G	p.F1559C	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103256993	103256993	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080630	exon8	c.T971G	p.V324G	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103263675	103263675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon7	c.G980A	p.G327E	.	.	.
KIF1B	23095	broad.mit.edu	36	1	10345937	10345937	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015074	exon39	c.C4176A	p.V1392V	.	.	.
PGD	5226	broad.mit.edu	36	1	10395810	10395810	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002631	exon8	c.G759T	p.K253N	.	.	.
AMY2A	279	broad.mit.edu	36	1	103964697	103964697	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000699	exon5	c.T746G	p.V249G	.	.	.
PRMT6	55170	broad.mit.edu	36	1	107401403	107401403	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018137	exon1	c.C543T	p.G181G	.	.	.
VAV3	10451	broad.mit.edu	36	1	107947271	107947271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079874	exon6	c.G373A	p.E125K	.	.	.
VAV3	10451	broad.mit.edu	36	1	107961736	107961736	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079874	exon4	c.T276G	p.S92R	.	.	.
VAV3	10451	broad.mit.edu	36	1	108219159	108219159	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006113	exon2	c.C208A	p.L70I	.	.	.
CLCC1	23155	broad.mit.edu	36	1	109284238	109284238	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048210	exon8	c.C846A	p.Y282X	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109517877	109517877	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020775	exon7	c.T847C	p.Y283H	.	.	.
SARS	6301	broad.mit.edu	36	1	109580139	109580139	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006513	exon8	c.C987T	p.Y329Y	.	.	.
CELSR2	1952	broad.mit.edu	36	1	109613935	109613935	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001408	exon22	c.C7077T	p.F2359F	.	.	.
PSMA5	5686	broad.mit.edu	36	1	109754134	109754134	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199774	exon8	c.A413C	p.K138T	.	.	.
SYPL2	284612	broad.mit.edu	36	1	109823540	109823540	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040709	exon6	c.C666A	p.N222K	.	.	.
ATXN7L2	127002	broad.mit.edu	36	1	109831843	109831843	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153340	exon5	c.C594T	p.I198I	.	.	.
ATXN7L2	127002	broad.mit.edu	36	1	109833068	109833068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153340	exon7	c.C860T	p.A287V	.	.	.
GSTM2	2946	broad.mit.edu	36	1	110015460	110015460	+	Missense_Mutation	SNP	C	G	G	rs1056795	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000848	exon6	c.C389G	p.A130G	.	.	.
EPS8L3	79574	broad.mit.edu	36	1	110094894	110094894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139053	exon18	c.C1684T	p.R562C	.	.	.
FAM40A	85369	broad.mit.edu	36	1	110390880	110390880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033088	exon13	c.G1472A	p.R491H	.	.	.
SLC6A17	388662	broad.mit.edu	36	1	110536188	110536188	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010898	exon7	c.C936A	p.G312G	.	.	.
KCNC4	3749	broad.mit.edu	36	1	110567378	110567378	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004978	exon2	c.C948A	p.I316I	.	.	.
RBM15	64783	broad.mit.edu	36	1	110683939	110683939	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022768	exon1	c.G389A	p.S130N	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862435	110862435	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005549	exon1	c.C498A	p.I166I	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110862857	110862857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005549	exon1	c.C76T	p.P26S	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111017359	111017359	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002232	exon1	c.C1596T	p.I532I	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111018031	111018031	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002232	exon1	c.C924T	p.F308F	.	.	.
CD53	963	broad.mit.edu	36	1	111236600	111236600	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040033	exon4	c.C174T	p.I58I	.	.	.
CHI3L2	1117	broad.mit.edu	36	1	111575005	111575005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004000	exon3	c.C189T	p.F63F	.	.	.
CHI3L2	1117	broad.mit.edu	36	1	111579072	111579072	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004000	exon5	c.C350A	p.S117Y	.	.	.
CHI3L2	1117	broad.mit.edu	36	1	111585498	111585498	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004000	exon9	c.G945T	p.K315N	.	.	.
CHIA	27159	broad.mit.edu	36	1	111656397	111656397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201653	exon4	c.C118T	p.R40C	.	.	.
CHIA	27159	broad.mit.edu	36	1	111664508	111664508	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201653	exon12	c.A1328G	p.N443S	.	.	.
C1orf88	128344	broad.mit.edu	36	1	111691055	111691055	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181643	exon2	c.A20G	p.D7G	.	.	.
DDX20	11218	broad.mit.edu	36	1	112106845	112106845	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007204	exon9	c.G1128A	p.E376E	.	.	.
DDX20	11218	broad.mit.edu	36	1	112110196	112110196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007204	exon11	c.G1627A	p.E543K	.	.	.
KCND3	3752	broad.mit.edu	36	1	112124893	112124893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004980	exon4	c.C1313T	p.S438L	.	.	.
MTOR	2475	broad.mit.edu	36	1	11216053	11216053	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004958	exon15	c.G2410T	p.E804X	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326629	112326629	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004980	exon2	c.G243T	p.E81D	.	.	.
UBIAD1	29914	broad.mit.edu	36	1	11256464	11256464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013319	exon1	c.G289A	p.A97T	.	.	.
WNT2B	7482	broad.mit.edu	36	1	112859171	112859171	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004185	exon3	c.G278A	p.R93H	.	.	.
ST7L	54879	broad.mit.edu	36	1	112900052	112900052	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138728	exon12	c.G1357T	p.E453X	.	.	.
RHOC	389	broad.mit.edu	36	1	113046758	113046758	+	Missense_Mutation	SNP	C	T	T	rs11538959	byCluster;byFrequency;byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175744	exon5	c.G358A	p.D120N	.	.	.
MAGI3	260425	broad.mit.edu	36	1	114028122	114028122	+	3'UTR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142782	exon21	c.T4409G	p.V1470G	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114050108	114050108	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006608	exon12	c.A1598C	p.N533T	.	.	.
PHTF1	10745	broad.mit.edu	36	1	114101861	114101861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006608	exon2	c.G85A	p.E29K	.	.	.
RSBN1	54665	broad.mit.edu	36	1	114141716	114141716	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018364	exon2	c.G1169T	p.R390I	.	.	.
PTPN22	26191	broad.mit.edu	36	1	114182151	114182151	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012411	exon11	c.G1229T	p.S410I	.	.	.
AP4B1	10717	broad.mit.edu	36	1	114240516	114240516	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006594	exon9	c.C1397T	p.S466L	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114307540	114307540	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198269	exon9	c.T990C	p.C330C	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114312748	114312748	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198269	exon12	c.G1604A	p.R535Q	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114749730	114749730	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015906	exon15	c.C2593T	p.R865X	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114967235	114967235	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198459	exon4	c.A952G	p.K318E	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115074547	115074547	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007158	exon11	c.G1118T	p.R373I	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115076753	115076753	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007158	exon9	c.G952T	p.E318X	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115229744	115229744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003176	exon13	c.G976T	p.D326Y	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115267618	115267618	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003176	exon21	c.G1744T	p.E582X	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115288551	115288551	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003176	exon24	c.G1995T	p.Q665H	.	.	.
CD58	965	broad.mit.edu	36	1	116888721	116888721	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001779	exon2	c.A99G	p.I33M	.	.	.
CD2	914	broad.mit.edu	36	1	117098781	117098781	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001767	exon2	c.G67T	p.V23F	.	.	.
CD101	9398	broad.mit.edu	36	1	117357556	117357556	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004258	exon4	c.G847T	p.D283Y	.	.	.
CD101	9398	broad.mit.edu	36	1	117362469	117362469	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004258	exon6	c.G1781A	p.R594Q	.	.	.
TTF2	8458	broad.mit.edu	36	1	117419218	117419218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003594	exon5	c.C489T	p.F163F	.	.	.
TTF2	8458	broad.mit.edu	36	1	117419345	117419345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003594	exon5	c.G616A	p.A206T	.	.	.
VTCN1	79679	broad.mit.edu	36	1	117500794	117500794	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024626	exon3	c.G370T	p.D124Y	.	.	.
MAN1A2	10905	broad.mit.edu	36	1	117786463	117786463	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006699	exon6	c.T943G	p.L315V	.	.	.
GDAP2	54834	broad.mit.edu	36	1	118256139	118256139	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017686	exon5	c.C559T	p.R187C	.	.	.
WDR3	10885	broad.mit.edu	36	1	118301281	118301281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006784	exon25	c.G2521A	p.E841K	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118352271	118352271	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon31	c.C4506T	p.I1502I	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118398214	118398214	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon20	c.G2748T	p.E916D	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118437386	118437386	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon8	c.G1089T	p.Q363H	.	.	.
ZNF697	90874	broad.mit.edu	36	1	119970208	119970208	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080470	exon2	c.G39T	p.Q13H	.	.	.
NBPF7	343505	broad.mit.edu	36	1	120185663	120185663	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001047980	exon3	c.A422C	p.H141P	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120239853	120239853	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021794	exon1	c.C630A	p.L210L	.	.	.
ADAM30	11085	broad.mit.edu	36	1	120240216	120240216	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021794	exon1	c.C267T	p.R89R	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120263716	120263716	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024408	exon31	c.C5523T	p.S1841S	.	.	.
NOTCH2	4853	broad.mit.edu	36	1	120284706	120284706	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024408	exon19	c.T3178G	p.C1060G	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12260250	12260250	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon19	c.G4018A	p.V1340I	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12338600	12338600	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon47	c.A9662C	p.Q3221P	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12356494	12356494	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon54	c.A10836G	p.K3612K	.	.	.
DHRS3	9249	broad.mit.edu	36	1	12562016	12562016	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004753	exon3	c.C351A	p.I117I	.	.	.
HNRNPCL1	343069	broad.mit.edu	36	1	12830700	12830700	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146181	exon1	c.T30C	p.D10D	.	.	.
PRAMEF2	65122	broad.mit.edu	36	1	12841493	12841493	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023014	exon2	c.G42A	p.G14G	.	.	.
PRAMEF10	343071	broad.mit.edu	36	1	12877218	12877218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039361	exon3	c.C652T	p.L218F	.	.	.
PRAMEF22	653606	broad.mit.edu	36	1	12959225	12959225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100631	exon2	c.G710A	p.R237H	.	.	.
PRAMEF20	645425	broad.mit.edu	36	1	13615637	13615637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099852	exon2	c.C239T	p.A80V	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143642004	143642004	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002811	exon1	c.G1062T	p.E354D	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143642398	143642398	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002811	exon1	c.G668T	p.S223I	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143642857	143642857	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002811	exon1	c.G209T	p.R70L	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143643057	143643057	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002811	exon1	c.G9A	p.E3E	.	.	.
SEC22B	9554	broad.mit.edu	36	1	143823747	143823747	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004892	exon4	c.A364G	p.T122A	.	.	.
SEC22B	9554	broad.mit.edu	36	1	143827149	143827149	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004892	exon5	c.C551T	p.A184V	.	.	.
NOTCH2NL	388677	broad.mit.edu	36	1	143984791	143984791	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203458	exon3	c.C288T	p.V96V	.	.	.
TXNIP	10628	broad.mit.edu	36	1	144150185	144150185	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006472	exon1	c.C26A	p.S9Y	.	.	.
ANKRD34A	284615	broad.mit.edu	36	1	144186058	144186058	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039888	exon4	c.C1373T	p.A458V	.	.	.
PEX11B	8799	broad.mit.edu	36	1	144234220	144234220	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184795	exon4	c.T682C	p.S228P	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144249620	144249620	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003637	exon23	c.G2790T	p.Q930H	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144267165	144267165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144698	exon2	c.G156A	p.S52S	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144273213	144273213	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144698	exon10	c.G1544T	p.R515I	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144273531	144273531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144698	exon10	c.G1862T	p.R621I	.	.	.
CD160	11126	broad.mit.edu	36	1	144415607	144415607	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007053	exon4	c.T167G	p.F56C	.	.	.
PRKAB2	5565	broad.mit.edu	36	1	145100644	145100644	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005399	exon6	c.C671A	p.S224Y	.	.	.
BCL9	607	broad.mit.edu	36	1	145557278	145557278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon8	c.G693A	p.P231P	.	.	.
BCL9	607	broad.mit.edu	36	1	145557755	145557755	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon8	c.G1170T	p.Q390H	.	.	.
BCL9	607	broad.mit.edu	36	1	145557867	145557867	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon8	c.G1282T	p.A428S	.	.	.
NBPF15	284565	broad.mit.edu	36	1	146857888	146857888	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001102663	exon12	c.T1329G	p.C443W	.	.	.
SV2A	9900	broad.mit.edu	36	1	148146344	148146344	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014849	exon9	c.G1418A	p.R473H	.	.	.
MTMR11	10903	broad.mit.edu	36	1	148172430	148172430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181873	exon7	c.G497A	p.R166Q	.	.	.
OTUD7B	56957	broad.mit.edu	36	1	148209780	148209780	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020205	exon3	c.G109A	p.A37T	.	.	.
PLEKHO1	51177	broad.mit.edu	36	1	148389830	148389830	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016274	exon2	c.T135C	p.Y45Y	.	.	.
CA14	23632	broad.mit.edu	36	1	148500628	148500628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012113	exon3	c.G223A	p.E75K	.	.	.
TARS2	80222	broad.mit.edu	36	1	148743437	148743437	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025150	exon14	c.T1620G	p.I540M	.	.	.
HORMAD1	84072	broad.mit.edu	36	1	148956319	148956319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199829	exon3	c.C97T	p.L33F	.	.	.
ZNF687	57592	broad.mit.edu	36	1	149529588	149529588	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020832	exon8	c.T3134C	p.V1045A	.	.	.
PI4KB	5298	broad.mit.edu	36	1	149554762	149554762	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198773	exon4	c.C820T	p.R274C	.	.	.
CGN	57530	broad.mit.edu	36	1	149773185	149773185	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020770	exon15	c.G2853T	p.E951D	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150324238	150324238	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008536	exon3	c.C2544A	p.V848V	.	.	.
TCHH	7062	broad.mit.edu	36	1	150346952	150346952	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007113	exon2	c.C5365T	p.R1789C	.	.	.
FLG	2312	broad.mit.edu	36	1	150548149	150548149	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C5837T	p.A1946V	.	.	.
KPRP	448834	broad.mit.edu	36	1	151000096	151000096	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025231	exon2	c.C1408A	p.P470T	.	.	.
SPRR2E	6704	broad.mit.edu	36	1	151332723	151332723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024209	exon2	c.G129A	p.Q43Q	.	.	.
PGLYRP4	57115	broad.mit.edu	36	1	151579494	151579494	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020393	exon7	c.G811A	p.D271N	.	.	.
S100A7L2	645922	broad.mit.edu	36	1	151677390	151677390	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001045479	exon2	c.G73T	p.V25F	.	.	.
S100A2	6273	broad.mit.edu	36	1	151800622	151800622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005978	exon3	c.G211A	p.D71N	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152180357	152180357	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014856	exon8	c.G1155C	p.Q385H	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152181186	152181186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014856	exon6	c.G838A	p.E280K	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152269028	152269028	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207308	exon28	c.T3823G	p.L1275V	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152296004	152296004	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207308	exon23	c.C3151T	p.R1051X	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152357785	152357785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207308	exon11	c.C1450T	p.R484C	.	.	.
NUP210L	91181	broad.mit.edu	36	1	152366452	152366452	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207308	exon9	c.G1144T	p.D382Y	.	.	.
C1orf189	388701	broad.mit.edu	36	1	152439650	152439650	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010979	exon3	c.C113A	p.A38E	.	.	.
AQP10	89872	broad.mit.edu	36	1	152562390	152562390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080429	exon4	c.G420T	p.K140N	.	.	.
AQP10	89872	broad.mit.edu	36	1	152562728	152562728	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080429	exon5	c.A529G	p.I177V	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152569513	152569513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005855	exon3	c.C49T	p.R17W	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152576741	152576741	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005855	exon12	c.G1131T	p.E377D	.	.	.
SHE	126669	broad.mit.edu	36	1	152723362	152723362	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010846	exon6	c.G1375A	p.A459T	.	.	.
UBE2Q1	55585	broad.mit.edu	36	1	152793845	152793845	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017582	exon4	c.A578C	p.E193A	.	.	.
PBXIP1	57326	broad.mit.edu	36	1	153190403	153190403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020524	exon5	c.G338A	p.G113D	.	.	.
DCST2	127579	broad.mit.edu	36	1	153265490	153265490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144622	exon10	c.G1523A	p.G508D	.	.	.
ADAM15	8751	broad.mit.edu	36	1	153293508	153293508	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207196	exon6	c.C514A	p.L172I	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153715368	153715368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon3	c.G3917A	p.R1306Q	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153717508	153717508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon3	c.G1777A	p.E593K	.	.	.
GON4L	54856	broad.mit.edu	36	1	153996906	153996906	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037533	exon24	c.G5062T	p.D1688Y	.	.	.
GON4L	54856	broad.mit.edu	36	1	154002166	154002166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032292	exon21	c.C3722T	p.A1241V	.	.	.
PMF1	11243	broad.mit.edu	36	1	154472746	154472746	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199654	exon4	c.G418T	p.A140S	.	.	.
SMG5	23381	broad.mit.edu	36	1	154487873	154487873	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015327	exon20	c.G2773T	p.E925X	.	.	.
C1orf61	10485	broad.mit.edu	36	1	154643572	154643572	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006365	exon6	c.T347G	p.F116C	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154764449	154764449	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon37	c.G4701A	p.T1567T	.	.	.
IQGAP3	128239	broad.mit.edu	36	1	154773691	154773691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178229	exon27	c.G3328A	p.E1110K	.	.	.
NES	10763	broad.mit.edu	36	1	154906016	154906016	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006617	exon4	c.G4588A	p.A1530T	.	.	.
NES	10763	broad.mit.edu	36	1	154908112	154908112	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006617	exon4	c.C2492A	p.S831Y	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155112512	155112512	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012331	exon12	c.G1500A	p.K500K	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155173311	155173311	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014784	exon39	c.C4431A	p.G1477G	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155757556	155757556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031281	exon11	c.C2390T	p.S797L	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155933567	155933567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052939	exon6	c.G831T	p.Q277H	.	.	.
CD5L	922	broad.mit.edu	36	1	156069829	156069829	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005894	exon5	c.C816T	p.N272N	.	.	.
CD5L	922	broad.mit.edu	36	1	156072270	156072270	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005894	exon3	c.G355T	p.D119Y	.	.	.
KIRREL	55243	broad.mit.edu	36	1	156324196	156324196	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018240	exon6	c.A689G	p.E230G	.	.	.
KIRREL	55243	broad.mit.edu	36	1	156324483	156324483	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018240	exon7	c.T831G	p.D277E	.	.	.
CD1D	912	broad.mit.edu	36	1	156419461	156419461	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001766	exon5	c.G777T	p.E259D	.	.	.
OR6Y1	391112	broad.mit.edu	36	1	156783882	156783882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005189	exon1	c.C638T	p.A213V	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156850682	156850682	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon49	c.T6827G	p.F2276C	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156851801	156851801	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon48	c.T6617C	p.I2206T	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156889048	156889048	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon23	c.C3208A	p.R1070R	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156899179	156899179	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon17	c.G2401T	p.D801Y	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156905931	156905931	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon14	c.G1724A	p.R575H	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156911024	156911024	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon9	c.T1178G	p.I393S	.	.	.
OR6K3	391114	broad.mit.edu	36	1	156954360	156954360	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005327	exon1	c.A170C	p.N57T	.	.	.
OR6K3	391114	broad.mit.edu	36	1	156954446	156954446	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005327	exon1	c.C84A	p.F28L	.	.	.
OR6K6	128371	broad.mit.edu	36	1	156991986	156991986	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005184	exon1	c.C757A	p.L253M	.	.	.
OR6N2	81442	broad.mit.edu	36	1	157013414	157013414	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005278	exon1	c.C636A	p.F212L	.	.	.
MNDA	4332	broad.mit.edu	36	1	157082186	157082186	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002432	exon5	c.C756T	p.F252F	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157173418	157173418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198930	exon2	c.G94A	p.D32N	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157180357	157180357	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198930	exon6	c.T1129C	p.S377P	.	.	.
PYHIN1	149628	broad.mit.edu	36	1	157210107	157210107	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152501	exon8	c.G1406T	p.R469I	.	.	.
AIM2	9447	broad.mit.edu	36	1	157302590	157302590	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004833	exon4	c.G550T	p.E184X	.	.	.
DNAJC16	23341	broad.mit.edu	36	1	15735560	15735560	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015291	exon4	c.C238A	p.L80I	.	.	.
CADM3	57863	broad.mit.edu	36	1	157429036	157429036	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021189	exon4	c.G376A	p.E126K	.	.	.
AGMAT	79814	broad.mit.edu	36	1	15776800	15776800	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024758	exon5	c.G867A	p.G289G	.	.	.
APCS	325	broad.mit.edu	36	1	157824862	157824862	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001639	exon2	c.C412T	p.L138L	.	.	.
CCDC19	25790	broad.mit.edu	36	1	158113144	158113144	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012337	exon10	c.G1178A	p.R393H	.	.	.
CCDC19	25790	broad.mit.edu	36	1	158124840	158124840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012337	exon4	c.G343A	p.A115T	.	.	.
KCNJ10	3766	broad.mit.edu	36	1	158278841	158278841	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002241	exon2	c.C106T	p.R36C	.	.	.
ATP1A2	477	broad.mit.edu	36	1	158365104	158365104	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000702	exon9	c.G1056T	p.K352N	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158395918	158395918	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144699	exon6	c.C756A	p.F252L	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158411076	158411076	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144699	exon15	c.C2226T	p.I742I	.	.	.
CASQ1	844	broad.mit.edu	36	1	158432319	158432319	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001231	exon6	c.G660T	p.K220N	.	.	.
CD84	8832	broad.mit.edu	36	1	158789895	158789895	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184879	exon4	c.C657T	p.F219F	.	.	.
SLAMF7	57823	broad.mit.edu	36	1	158986274	158986274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021181	exon3	c.G416A	p.S139N	.	.	.
CD244	51744	broad.mit.edu	36	1	159078126	159078126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166664	exon2	c.G251A	p.S84N	.	.	.
ITLN2	142683	broad.mit.edu	36	1	159187022	159187022	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080878	exon5	c.G545A	p.R182H	.	.	.
USF1	7391	broad.mit.edu	36	1	159277075	159277075	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007122	exon9	c.G629A	p.R210H	.	.	.
USF1	7391	broad.mit.edu	36	1	159278128	159278128	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007122	exon6	c.G409T	p.A137S	.	.	.
ARHGAP30	257106	broad.mit.edu	36	1	159289748	159289748	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181720	exon6	c.G588T	p.E196D	.	.	.
NIT1	4817	broad.mit.edu	36	1	159356992	159356992	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005600	exon7	c.G797T	p.R266I	.	.	.
USP21	27005	broad.mit.edu	36	1	159397589	159397589	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012475	exon2	c.T535C	p.S179P	.	.	.
B4GALT3	8703	broad.mit.edu	36	1	159408298	159408298	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199874	exon8	c.C1114T	p.R372C	.	.	.
ADAMTS4	9507	broad.mit.edu	36	1	159434576	159434576	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005099	exon1	c.C466T	p.R156W	.	.	.
C1orf192	257177	broad.mit.edu	36	1	159601513	159601513	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013625	exon5	c.A400G	p.T134A	.	.	.
FCGR3A	2214	broad.mit.edu	36	1	159779537	159779537	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127595	exon6	c.T654G	p.L218L	.	.	.
FCGR2C	9103	broad.mit.edu	36	1	159826166	159826166	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201563	exon3	c.C324T	p.S108S	.	.	.
FCGR2B	2213	broad.mit.edu	36	1	159908035	159908035	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190828	exon2	c.C342T	p.S114S	.	.	.
OLFML2B	25903	broad.mit.edu	36	1	160236561	160236561	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015441	exon5	c.G915T	p.K305N	.	.	.
NOS1AP	9722	broad.mit.edu	36	1	160591711	160591711	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164757	exon7	c.G691T	p.G231C	.	.	.
NOS1AP	9722	broad.mit.edu	36	1	160601979	160601979	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164757	exon9	c.C1086T	p.N362N	.	.	.
DDR2	4921	broad.mit.edu	36	1	161006855	161006855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014796	exon13	c.G1433A	p.R478H	.	.	.
DDR2	4921	broad.mit.edu	36	1	161008558	161008558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014796	exon14	c.C1625T	p.A542V	.	.	.
SPEN	23013	broad.mit.edu	36	1	16130545	16130545	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015001	exon11	c.G5223A	p.S1741S	.	.	.
RGS4	5999	broad.mit.edu	36	1	161309906	161309906	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113380	exon4	c.A194G	p.E65G	.	.	.
NUF2	83540	broad.mit.edu	36	1	161563956	161563956	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031423	exon3	c.C178T	p.R60X	.	.	.
NUF2	83540	broad.mit.edu	36	1	161584247	161584247	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031423	exon12	c.C1019T	p.S340L	.	.	.
LMX1A	4009	broad.mit.edu	36	1	163439866	163439866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177398	exon9	c.G1024A	p.D342N	.	.	.
RXRG	6258	broad.mit.edu	36	1	163637145	163637145	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006917	exon10	c.G1371T	p.E457D	.	.	.
RXRG	6258	broad.mit.edu	36	1	163645436	163645436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006917	exon7	c.C1029T	p.V343V	.	.	.
ALDH9A1	223	broad.mit.edu	36	1	163903274	163903274	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000696	exon9	c.G1245T	p.E415D	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165362978	165362978	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080426	exon5	c.C1986A	p.F662L	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166045557	166045557	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon30	c.C4356T	p.T1452T	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166045650	166045650	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon30	c.G4263A	p.T1421T	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166065230	166065230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon23	c.C3190T	p.R1064C	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166068908	166068908	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon22	c.C3075T	p.V1025V	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166082121	166082121	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167749	exon17	c.C1983A	p.I661I	.	.	.
GPR161	23432	broad.mit.edu	36	1	166340444	166340444	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153832	exon4	c.G269A	p.R90H	.	.	.
TBX19	9095	broad.mit.edu	36	1	166527163	166527163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005149	exon2	c.G345T	p.E115D	.	.	.
TBX19	9095	broad.mit.edu	36	1	166544734	166544734	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005149	exon7	c.G1047A	p.G349G	.	.	.
ATP1B1	481	broad.mit.edu	36	1	167363110	167363110	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001677	exon4	c.G407A	p.R136Q	.	.	.
NME7	29922	broad.mit.edu	36	1	167534428	167534428	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_197972	exon6	c.C530A	p.S177Y	.	.	.
BLZF1	8548	broad.mit.edu	36	1	167616446	167616446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003666	exon5	c.C772T	p.R258C	.	.	.
F5	2153	broad.mit.edu	36	1	167788547	167788547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000130	exon8	c.C1168A	p.H390N	.	.	.
F5	2153	broad.mit.edu	36	1	167822225	167822225	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000130	exon1	c.C24T	p.L8L	.	.	.
SELP	6403	broad.mit.edu	36	1	167829482	167829482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003005	exon14	c.C2392T	p.R798C	.	.	.
SELP	6403	broad.mit.edu	36	1	167853218	167853218	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003005	exon3	c.C153A	p.Y51X	.	.	.
C1orf156	92342	broad.mit.edu	36	1	168028797	168028797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033418	exon2	c.G664A	p.V222M	.	.	.
SCYL3	57147	broad.mit.edu	36	1	168098390	168098390	+	Silent	SNP	G	T	T	rs61734335	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181093	exon10	c.C1128A	p.V376V	.	.	.
PRRX1	5396	broad.mit.edu	36	1	168962036	168962036	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006902	exon3	c.C469A	p.L157I	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169197699	169197699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025063	exon6	c.G333A	p.T111T	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169234007	169234007	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025063	exon15	c.G1564T	p.D522Y	.	.	.
FMO2	2327	broad.mit.edu	36	1	169429258	169429258	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001460	exon3	c.T293G	p.F98C	.	.	.
FMO2	2327	broad.mit.edu	36	1	169432527	169432527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001460	exon4	c.G437A	p.C146Y	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169777514	169777514	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon16	c.C4279T	p.R1427X	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169777662	169777662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon16	c.C4427T	p.S1476F	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169820212	169820212	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon30	c.C7666A	p.L2556I	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171771612	171771612	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon15	c.G1755T	p.K585N	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171809079	171809079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon9	c.G911A	p.R304K	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171823543	171823543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178527	exon5	c.G407A	p.G136E	.	.	.
KLHL20	27252	broad.mit.edu	36	1	172020949	172020949	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014458	exon12	c.C1771T	p.R591W	.	.	.
SERPINC1	462	broad.mit.edu	36	1	172139813	172139813	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000488	exon7	c.G1232T	p.G411V	.	.	.
SERPINC1	462	broad.mit.edu	36	1	172150655	172150655	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000488	exon2	c.C67T	p.L23F	.	.	.
RC3H1	149041	broad.mit.edu	36	1	172182358	172182358	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172071	exon16	c.C2840A	p.S947Y	.	.	.
SDHB	6390	broad.mit.edu	36	1	17226883	17226883	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003000	exon5	c.C488A	p.S163Y	.	.	.
CACYBP	27101	broad.mit.edu	36	1	173240416	173240416	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014412	exon2	c.C59T	p.A20V	.	.	.
MRPS14	63931	broad.mit.edu	36	1	173250506	173250506	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022100	exon3	c.C309A	p.R103R	.	.	.
TNN	63923	broad.mit.edu	36	1	173313525	173313525	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon2	c.G348T	p.E116D	.	.	.
TNN	63923	broad.mit.edu	36	1	173316132	173316132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon4	c.G995A	p.R332H	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	174938403	174938403	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon9	c.C3274A	p.L1092I	.	.	.
PAPPA2	60676	broad.mit.edu	36	1	175078213	175078213	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020318	exon23	c.A5376G	p.X1792X	.	.	.
ASTN1	460	broad.mit.edu	36	1	175193544	175193544	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004319	exon11	c.C1780T	p.L594F	.	.	.
ASTN1	460	broad.mit.edu	36	1	175400181	175400181	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004319	exon1	c.G255T	p.E85D	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175491817	175491817	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021165	exon3	c.A409C	p.N137H	.	.	.
PADI6	353238	broad.mit.edu	36	1	17587602	17587602	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207421	exon7	c.C819A	p.I273I	.	.	.
SEC16B	89866	broad.mit.edu	36	1	176183652	176183652	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033127	exon13	c.A1594T	p.I532F	.	.	.
RASAL2	9462	broad.mit.edu	36	1	176681402	176681402	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004841	exon7	c.T1165A	p.Y389N	.	.	.
C1orf49	84066	broad.mit.edu	36	1	176757019	176757019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170723	exon8	c.C583T	p.R195W	.	.	.
RALGPS2	55103	broad.mit.edu	36	1	177142540	177142540	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152663	exon19	c.C1637T	p.S546L	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177769627	177769627	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144696	exon24	c.G2790T	p.E930D	.	.	.
C1orf125	126859	broad.mit.edu	36	1	177770542	177770542	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144696	exon25	c.G2853T	p.E951D	.	.	.
TDRD5	163589	broad.mit.edu	36	1	177886634	177886634	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199092	exon9	c.A475G	p.T159A	.	.	.
CEP350	9857	broad.mit.edu	36	1	178329849	178329849	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014810	exon34	c.T7986G	p.S2662S	.	.	.
QSOX1	5768	broad.mit.edu	36	1	178414579	178414579	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002826	exon5	c.G543A	p.A181A	.	.	.
QSOX1	5768	broad.mit.edu	36	1	178421817	178421817	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002826	exon8	c.G894T	p.K298N	.	.	.
XPR1	9213	broad.mit.edu	36	1	179070637	179070637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135669	exon10	c.G1139A	p.R380Q	.	.	.
XPR1	9213	broad.mit.edu	36	1	179072376	179072376	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004736	exon11	c.C1402T	p.R468X	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179955581	179955581	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon13	c.C1710A	p.V570V	.	.	.
CACNA1E	777	broad.mit.edu	36	1	179987919	179987919	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon27	c.A3749C	p.D1250A	.	.	.
ZNF648	127665	broad.mit.edu	36	1	180293538	180293538	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009992	exon2	c.G231T	p.E77D	.	.	.
GLUL	2752	broad.mit.edu	36	1	180624397	180624397	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002065	exon3	c.C99T	p.I33I	.	.	.
RGS8	85397	broad.mit.edu	36	1	180902712	180902712	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033345	exon3	c.C100T	p.R34X	.	.	.
DHX9	1660	broad.mit.edu	36	1	181117092	181117092	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001357	exon23	c.C2695T	p.R899W	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181352413	181352413	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon7	c.C1407T	p.V469V	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181357662	181357662	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon12	c.C2172T	p.C724C	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181370424	181370424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon23	c.G3856A	p.A1286T	.	.	.
LAMC1	3915	broad.mit.edu	36	1	181372325	181372325	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002293	exon25	c.C4296T	p.I1432I	.	.	.
APOBEC4	403314	broad.mit.edu	36	1	181883572	181883572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203454	exon2	c.C968T	p.P323L	.	.	.
EDEM3	80267	broad.mit.edu	36	1	182947539	182947539	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025191	exon15	c.T1632C	p.S544S	.	.	.
FAM129A	116496	broad.mit.edu	36	1	183039421	183039421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052966	exon12	c.G1475A	p.R492Q	.	.	.
FAM129A	116496	broad.mit.edu	36	1	183129912	183129912	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052966	exon3	c.T238G	p.S80A	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183420552	183420552	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105518	exon9	c.G1295A	p.R432H	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183457675	183457675	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105518	exon15	c.G2193T	p.K731N	.	.	.
C1orf26	54823	broad.mit.edu	36	1	183526470	183526470	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105518	exon19	c.A2615G	p.E872G	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184218122	184218122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon18	c.G2768A	p.R923Q	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184251185	184251185	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon31	c.T4902G	p.D1634E	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184417992	184417992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon105	c.G16364A	p.C5455Y	.	.	.
PRG4	10216	broad.mit.edu	36	1	184542416	184542416	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127708	exon6	c.G819T	p.E273D	.	.	.
PRG4	10216	broad.mit.edu	36	1	184544542	184544542	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127708	exon6	c.A2945T	p.K982M	.	.	.
TPR	7175	broad.mit.edu	36	1	184572347	184572347	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon33	c.A4609G	p.T1537A	.	.	.
TPR	7175	broad.mit.edu	36	1	184582027	184582027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon23	c.C2959T	p.R987C	.	.	.
PLA2G4A	5321	broad.mit.edu	36	1	185201182	185201182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024420	exon15	c.G1598A	p.R533Q	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188334171	188334171	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199051	exon8	c.A1901G	p.K634R	.	.	.
RGS18	64407	broad.mit.edu	36	1	190420197	190420197	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130782	exon5	c.G598T	p.D200Y	.	.	.
RGS21	431704	broad.mit.edu	36	1	190583122	190583122	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039152	exon3	c.A68G	p.D23G	.	.	.
UBR4	23352	broad.mit.edu	36	1	19371950	19371950	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020765	exon25	c.C3516A	p.F1172L	.	.	.
CFH	3075	broad.mit.edu	36	1	194982989	194982989	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000186	exon22	c.C3619A	p.L1207I	.	.	.
CFHR1	3078	broad.mit.edu	36	1	195061345	195061345	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002113	exon2	c.T174C	p.N58N	.	.	.
CFHR1	3078	broad.mit.edu	36	1	195062685	195062685	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002113	exon3	c.A357G	p.R119R	.	.	.
F13B	2165	broad.mit.edu	36	1	195286567	195286567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001994	exon10	c.G1621T	p.D541Y	.	.	.
ASPM	259266	broad.mit.edu	36	1	195329005	195329005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon21	c.G9094A	p.A3032T	.	.	.
ASPM	259266	broad.mit.edu	36	1	195337108	195337108	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon18	c.G7896T	p.Q2632H	.	.	.
ASPM	259266	broad.mit.edu	36	1	195353624	195353624	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon17	c.G3983T	p.R1328I	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195395365	195395365	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194314	exon10	c.G2477A	p.R826H	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195412329	195412329	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194314	exon7	c.A1867G	p.K623E	.	.	.
ZBTB41	360023	broad.mit.edu	36	1	195436014	195436014	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194314	exon1	c.G213T	p.K71N	.	.	.
CRB1	23418	broad.mit.edu	36	1	195663368	195663368	+	Missense_Mutation	SNP	C	T	T	rs62635654	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon7	c.C2290T	p.R764C	.	.	.
NEK7	140609	broad.mit.edu	36	1	196513741	196513741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133494	exon6	c.C400T	p.P134S	.	.	.
ATP6V1G3	127124	broad.mit.edu	36	1	196759220	196759220	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133262	exon4	c.G281A	p.S94N	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196942623	196942623	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002838	exon9	c.G817T	p.E273X	.	.	.
PTPRC	5788	broad.mit.edu	36	1	196948783	196948783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002838	exon12	c.G1244A	p.R415K	.	.	.
NR5A2	2494	broad.mit.edu	36	1	198263631	198263631	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205860	exon1	c.A33C	p.Q11H	.	.	.
NR5A2	2494	broad.mit.edu	36	1	198281228	198281228	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205860	exon4	c.G356T	p.R119M	.	.	.
NR5A2	2494	broad.mit.edu	36	1	198409854	198409854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205860	exon8	c.C1519T	p.R507W	.	.	.
ZNF281	23528	broad.mit.edu	36	1	198644514	198644514	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012482	exon2	c.A943T	p.K315X	.	.	.
KIF14	9928	broad.mit.edu	36	1	198805730	198805730	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon23	c.G3593T	p.R1198I	.	.	.
KIF14	9928	broad.mit.edu	36	1	198835854	198835854	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon13	c.G2311T	p.E771X	.	.	.
KIF14	9928	broad.mit.edu	36	1	198850118	198850118	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon4	c.G1406T	p.R469I	.	.	.
KIF21B	23046	broad.mit.edu	36	1	199232048	199232048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017596	exon15	c.G2176A	p.A726T	.	.	.
KIF21B	23046	broad.mit.edu	36	1	199236479	199236479	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017596	exon10	c.C1455T	p.I485I	.	.	.
LAD1	3898	broad.mit.edu	36	1	199618050	199618050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005558	exon9	c.G1501A	p.E501K	.	.	.
CSRP1	1465	broad.mit.edu	36	1	199724631	199724631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193572	exon4	c.C386T	p.A129V	.	.	.
CSRP1	1465	broad.mit.edu	36	1	199725980	199725980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193572	exon3	c.C228T	p.G76G	.	.	.
NAV1	89796	broad.mit.edu	36	1	200019367	200019367	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167738	exon5	c.C1395A	p.F465L	.	.	.
NAV1	89796	broad.mit.edu	36	1	200019475	200019475	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167738	exon5	c.G1503T	p.M501I	.	.	.
GPR37L1	9283	broad.mit.edu	36	1	200364045	200364045	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004767	exon2	c.A1184T	p.D395V	.	.	.
SYT2	127833	broad.mit.edu	36	1	200840270	200840270	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136504	exon3	c.A281G	p.N94S	.	.	.
OTUD3	23252	broad.mit.edu	36	1	20104062	20104062	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015207	exon6	c.G830T	p.R277I	.	.	.
ADORA1	134	broad.mit.edu	36	1	201401225	201401225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000674	exon4	c.C555A	p.F185L	.	.	.
ADORA1	134	broad.mit.edu	36	1	201401470	201401470	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000674	exon4	c.G800T	p.S267I	.	.	.
CHIT1	1118	broad.mit.edu	36	1	201461422	201461422	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003465	exon3	c.G255T	p.K85N	.	.	.
OPTC	26254	broad.mit.edu	36	1	201732801	201732801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014359	exon3	c.C305T	p.S102L	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201919116	201919116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001396	exon2	c.C160A	p.L54I	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201942887	201942887	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001396	exon9	c.C1227A	p.F409L	.	.	.
LAX1	54900	broad.mit.edu	36	1	202010219	202010219	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017773	exon5	c.C984T	p.P328P	.	.	.
ZC3H11A	9877	broad.mit.edu	36	1	202083138	202083138	+	Missense_Mutation	SNP	C	T	T	rs4019824	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014827	exon15	c.C1246T	p.R416W	.	.	.
MDM4	4194	broad.mit.edu	36	1	202785071	202785071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002393	exon11	c.G1111A	p.V371I	.	.	.
NFASC	23114	broad.mit.edu	36	1	203190081	203190081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon3	c.G340A	p.A114T	.	.	.
CNTN2	6900	broad.mit.edu	36	1	203300461	203300461	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005076	exon12	c.C1479A	p.F493L	.	.	.
RBBP5	5929	broad.mit.edu	36	1	203332589	203332589	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005057	exon12	c.A1240C	p.N414H	.	.	.
NUAK2	81788	broad.mit.edu	36	1	203539576	203539576	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030952	exon7	c.C1512A	p.L504L	.	.	.
RAB7L1	8934	broad.mit.edu	36	1	204006114	204006114	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135662	exon6	c.C591A	p.S197S	.	.	.
SLC41A1	254428	broad.mit.edu	36	1	204045879	204045879	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173854	exon2	c.C314A	p.P105Q	.	.	.
AVPR1B	553	broad.mit.edu	36	1	204391687	204391687	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000707	exon1	c.C624T	p.F208F	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204888500	204888500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003582	exon3	c.C1334T	p.S445F	.	.	.
DYRK3	8444	broad.mit.edu	36	1	204888589	204888589	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003582	exon3	c.C1423T	p.R475W	.	.	.
IL20	50604	broad.mit.edu	36	1	205105861	205105861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018724	exon1	c.C41T	p.A14V	.	.	.
FAIM3	9214	broad.mit.edu	36	1	205153939	205153939	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193338	exon2	c.G161A	p.G54E	.	.	.
PIGR	5284	broad.mit.edu	36	1	205177201	205177201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002644	exon4	c.G907A	p.D303N	.	.	.
CR2	1380	broad.mit.edu	36	1	205715157	205715157	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006658	exon14	c.C2689T	p.P897S	.	.	.
CR1	1378	broad.mit.edu	36	1	205807796	205807796	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000651	exon25	c.C3957A	p.I1319I	.	.	.
CR1L	1379	broad.mit.edu	36	1	205939212	205939212	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175710	exon8	c.C1198A	p.L400I	.	.	.
CR1L	1379	broad.mit.edu	36	1	205957512	205957512	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175710	exon11	c.G1495T	p.E499X	.	.	.
CD46	4179	broad.mit.edu	36	1	206023282	206023282	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172359	exon10	c.A1011C	p.G337G	.	.	.
CD46	4179	broad.mit.edu	36	1	206025645	206025645	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172359	exon12	c.G1122T	p.K374N	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207869868	207869868	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017402	exon9	c.G969T	p.E323D	.	.	.
HSD11B1	3290	broad.mit.edu	36	1	207946752	207946752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005525	exon3	c.G295A	p.A99T	.	.	.
C1orf107	27042	broad.mit.edu	36	1	208083616	208083616	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014388	exon11	c.G1979T	p.G660V	.	.	.
PINK1	65018	broad.mit.edu	36	1	20837159	20837159	+	Missense_Mutation	SNP	C	T	T	rs17852513	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032409	exon2	c.C625T	p.P209S	 PINK1,ovary,NS,Substitution - coding silent,-2 	.	.
SYT14	255928	broad.mit.edu	36	1	208400782	208400782	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153262	exon8	c.T1440C	p.N480N	.	.	.
KIF17	57576	broad.mit.edu	36	1	20863803	20863803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020816	exon15	c.G2951A	p.S984N	.	.	.
KIF17	57576	broad.mit.edu	36	1	20871249	20871249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020816	exon12	c.G2491T	p.D831Y	.	.	.
TRAF5	7188	broad.mit.edu	36	1	209596357	209596357	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004619	exon4	c.G302T	p.R101I	.	.	.
HP1BP3	50809	broad.mit.edu	36	1	20979489	20979489	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016287	exon2	c.T32C	p.V11A	.	.	.
SLC30A1	7779	broad.mit.edu	36	1	209815802	209815802	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021194	exon2	c.G1075T	p.E359X	.	.	.
SLC30A1	7779	broad.mit.edu	36	1	209815928	209815928	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021194	exon2	c.G949T	p.D317Y	.	.	.
INTS7	25896	broad.mit.edu	36	1	210221094	210221094	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199812	exon10	c.T1194G	p.S398R	.	.	.
INTS7	25896	broad.mit.edu	36	1	210256929	210256929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199812	exon4	c.G431A	p.R144H	.	.	.
C1orf227	149643	broad.mit.edu	36	1	211076077	211076077	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024601	exon2	c.A38T	p.K13I	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21141127	21141127	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003760	exon9	c.A939G	p.I313M	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211480670	211480670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012424	exon11	c.G1228A	p.G410S	.	.	.
PROX1	5629	broad.mit.edu	36	1	212237184	212237184	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002763	exon2	c.G683A	p.R228Q	.	.	.
CENPF	1063	broad.mit.edu	36	1	212881894	212881894	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon12	c.A3590C	p.E1197A	.	.	.
CENPF	1063	broad.mit.edu	36	1	212882114	212882114	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon12	c.A3810G	p.E1270E	.	.	.
CENPF	1063	broad.mit.edu	36	1	212883008	212883008	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon12	c.G4704T	p.E1568D	.	.	.
CENPF	1063	broad.mit.edu	36	1	212883137	212883137	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon12	c.G4833T	p.Q1611H	.	.	.
CENPF	1063	broad.mit.edu	36	1	212885422	212885422	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon13	c.G5886A	p.Q1962Q	.	.	.
CENPF	1063	broad.mit.edu	36	1	212887038	212887038	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016343	exon13	c.C7502A	p.S2501Y	.	.	.
KCNK2	3776	broad.mit.edu	36	1	213326613	213326613	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017425	exon2	c.T326C	p.V109A	.	.	.
KCTD3	51133	broad.mit.edu	36	1	213818978	213818978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016121	exon7	c.G410A	p.R137H	.	.	.
USH2A	7399	broad.mit.edu	36	1	213910983	213910983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon64	c.C14087A	p.S4696Y	.	.	.
USH2A	7399	broad.mit.edu	36	1	214038911	214038911	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon50	c.T9919C	p.C3307R	.	.	.
USH2A	7399	broad.mit.edu	36	1	214436565	214436565	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon19	c.C4204A	p.L1402I	.	.	.
USH2A	7399	broad.mit.edu	36	1	214438286	214438286	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon18	c.G4075A	p.E1359K	.	.	.
USH2A	7399	broad.mit.edu	36	1	214490934	214490934	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon12	c.A2101G	p.T701A	.	.	.
USH2A	7399	broad.mit.edu	36	1	214563552	214563552	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon8	c.C1437T	p.F479F	.	.	.
USH2A	7399	broad.mit.edu	36	1	214604983	214604983	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon4	c.G719T	p.R240I	.	.	.
USH2A	7399	broad.mit.edu	36	1	214661866	214661866	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon2	c.G436T	p.A146S	.	.	.
ESRRG	2104	broad.mit.edu	36	1	214759265	214759265	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206594	exon8	c.C915T	p.D305D	.	.	.
ESRRG	2104	broad.mit.edu	36	1	214804325	214804325	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206594	exon7	c.T652A	p.L218M	.	.	.
ALPL	249	broad.mit.edu	36	1	21776679	21776679	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000478	exon12	c.G1526A	p.G509D	.	.	.
EPRS	2058	broad.mit.edu	36	1	218237015	218237015	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004446	exon18	c.C2474T	p.S825F	.	.	.
EPRS	2058	broad.mit.edu	36	1	218274944	218274944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004446	exon3	c.C166T	p.R56C	.	.	.
IARS2	55699	broad.mit.edu	36	1	218377955	218377955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018060	exon17	c.G2122A	p.E708K	.	.	.
USP48	84196	broad.mit.edu	36	1	21914519	21914519	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032236	exon15	c.G1913T	p.R638I	.	.	.
HHIPL2	79802	broad.mit.edu	36	1	220762661	220762661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024746	exon9	c.G2080A	p.V694I	.	.	.
MIA3	375056	broad.mit.edu	36	1	220861136	220861136	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon2	c.G146A	p.R49H	.	.	.
MIA3	375056	broad.mit.edu	36	1	220888804	220888804	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198551	exon8	c.G3620T	p.R1207I	.	.	.
C1orf58	148362	broad.mit.edu	36	1	220970034	220970034	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144695	exon11	c.C881T	p.T294I	.	.	.
DISP1	84976	broad.mit.edu	36	1	221183201	221183201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon2	c.C413T	p.T138M	.	.	.
DISP1	84976	broad.mit.edu	36	1	221243105	221243105	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.G1743A	p.W581X	.	.	.
DISP1	84976	broad.mit.edu	36	1	221243822	221243822	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.C2460T	p.S820S	.	.	.
DISP1	84976	broad.mit.edu	36	1	221244439	221244439	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.C3077A	p.S1026Y	.	.	.
DISP1	84976	broad.mit.edu	36	1	221245592	221245592	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.G4230T	p.E1410D	.	.	.
DISP1	84976	broad.mit.edu	36	1	221245805	221245805	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.A4443G	p.Q1481Q	.	.	.
TLR5	7100	broad.mit.edu	36	1	221351478	221351478	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003268	exon6	c.C1519A	p.L507M	.	.	.
CAPN2	824	broad.mit.edu	36	1	222015913	222015913	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146068	exon13	c.G1303A	p.D435N	.	.	.
NVL	4931	broad.mit.edu	36	1	222481957	222481957	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002533	exon23	c.C2565T	p.S855S	.	.	.
NVL	4931	broad.mit.edu	36	1	222542181	222542181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002533	exon14	c.C1713T	p.G571G	.	.	.
NVL	4931	broad.mit.edu	36	1	222559478	222559478	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002533	exon7	c.C629A	p.S210Y	.	.	.
WDR26	80232	broad.mit.edu	36	1	222653251	222653251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025160	exon10	c.C1528T	p.R510W	.	.	.
LBR	3930	broad.mit.edu	36	1	223658785	223658785	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002296	exon13	c.G1631A	p.R544H	.	.	.
LBR	3930	broad.mit.edu	36	1	223664670	223664670	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002296	exon10	c.G1260T	p.M420I	.	.	.
EPHX1	2052	broad.mit.edu	36	1	224083069	224083069	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136018	exon2	c.C16A	p.L6I	.	.	.
C1orf55	163859	broad.mit.edu	36	1	224246799	224246799	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152608	exon4	c.A443C	p.K148T	.	.	.
LIN9	286826	broad.mit.edu	36	1	224487763	224487763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173083	exon13	c.C1378T	p.R460W	.	.	.
LIN9	286826	broad.mit.edu	36	1	224540682	224540682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173083	exon6	c.C547T	p.R183W	.	.	.
PARP1	142	broad.mit.edu	36	1	224618368	224618368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001618	exon20	c.C2685T	p.I895I	.	.	.
PARP1	142	broad.mit.edu	36	1	224619421	224619421	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001618	exon19	c.C2563A	p.H855N	.	.	.
ITPKB	3707	broad.mit.edu	36	1	224893921	224893921	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002221	exon6	c.A2513G	p.E838G	.	.	.
ITPKB	3707	broad.mit.edu	36	1	224989946	224989946	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002221	exon2	c.G1837A	p.E613K	.	.	.
ITPKB	3707	broad.mit.edu	36	1	224990147	224990147	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002221	exon2	c.G1636A	p.E546K	.	.	.
PSEN2	5664	broad.mit.edu	36	1	225138187	225138187	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000447	exon5	c.C300T	p.I100I	.	.	.
CDC42BPA	8476	broad.mit.edu	36	1	225326575	225326575	+	Silent	SNP	G	A	A	rs55845581	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014826	exon19	c.C2541T	p.I847I	.	.	.
ZNF678	339500	broad.mit.edu	36	1	225909715	225909715	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178549	exon4	c.G1306T	p.E436X	.	.	.
ARF1	375	broad.mit.edu	36	1	226352277	226352277	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024226	exon5	c.C486T	p.S162S	.	.	.
HIST3H3	8290	broad.mit.edu	36	1	226679432	226679432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003493	exon1	c.G218A	p.R73H	.	.	.
NUP133	55746	broad.mit.edu	36	1	227669088	227669088	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018230	exon16	c.G2115A	p.E705E	.	.	.
EPHA8	2046	broad.mit.edu	36	1	22788379	22788379	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006943	exon5	c.C1408A	p.L470M	.	.	.
GALNT2	2590	broad.mit.edu	36	1	228467675	228467675	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004481	exon14	c.T1379A	p.L460X	.	.	.
EXOC8	149371	broad.mit.edu	36	1	229538544	229538544	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175876	exon1	c.T1571C	p.V524A	.	.	.
EPHB2	2048	broad.mit.edu	36	1	23062158	23062158	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017449	exon4	c.G853A	p.A285T	.	.	.
EPHB2	2048	broad.mit.edu	36	1	23064164	23064164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017449	exon5	c.G1175A	p.R392H	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230667637	230667637	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon7	c.C2392T	p.R798X	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230716803	230716803	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon1	c.C906T	p.H302H	.	.	.
KIAA1383	54627	broad.mit.edu	36	1	231008888	231008888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019090	exon1	c.C1496T	p.S499F	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231200666	231200666	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon32	c.C5745T	p.G1915G	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231201733	231201733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon31	c.G5344A	p.V1782I	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231557367	231557367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032435	exon4	c.G1298A	p.R433K	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231564424	231564424	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032435	exon5	c.G1314T	p.E438D	.	.	.
TARBP1	6894	broad.mit.edu	36	1	232669882	232669882	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005646	exon4	c.G1237T	p.E413X	.	.	.
LUZP1	7798	broad.mit.edu	36	1	23293301	23293301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142546	exon3	c.G41A	p.R14H	.	.	.
ARID4B	51742	broad.mit.edu	36	1	233443808	233443808	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016374	exon17	c.A1740G	p.G580G	.	.	.
B3GALNT2	148789	broad.mit.edu	36	1	233684187	233684187	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152490	exon10	c.C1215T	p.P405P	.	.	.
LYST	1130	broad.mit.edu	36	1	233927191	233927191	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon46	c.C10379A	p.P3460H	.	.	.
LYST	1130	broad.mit.edu	36	1	234010825	234010825	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon16	c.T5177G	p.F1726C	.	.	.
LYST	1130	broad.mit.edu	36	1	234039215	234039215	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon5	c.T1526G	p.F509C	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234456400	234456400	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019891	exon12	c.G844T	p.E282X	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234499809	234499809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019891	exon2	c.C211T	p.R71C	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234795927	234795927	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018072	exon31	c.C4350A	p.V1450V	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234825553	234825553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018072	exon8	c.C1000T	p.L334F	.	.	.
HEATR1	55127	broad.mit.edu	36	1	234827851	234827851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018072	exon5	c.G553T	p.D185Y	.	.	.
MTR	4548	broad.mit.edu	36	1	235042681	235042681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000254	exon6	c.G523A	p.A175T	.	.	.
MTR	4548	broad.mit.edu	36	1	235082520	235082520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000254	exon17	c.G1772A	p.R591Q	.	.	.
RYR2	6262	broad.mit.edu	36	1	235726485	235726485	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon20	c.G2013T	p.K671N	.	.	.
RYR2	6262	broad.mit.edu	36	1	235733330	235733330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon22	c.G2515A	p.E839K	.	.	.
RYR2	6262	broad.mit.edu	36	1	235821771	235821771	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon32	c.T4270C	p.S1424P	.	.	.
RYR2	6262	broad.mit.edu	36	1	235844540	235844540	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon37	c.T5489C	p.I1830T	.	.	.
RYR2	6262	broad.mit.edu	36	1	235844650	235844650	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon37	c.G5599T	p.E1867X	.	.	.
RYR2	6262	broad.mit.edu	36	1	235864895	235864895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon44	c.C6772T	p.R2258C	.	.	.
RYR2	6262	broad.mit.edu	36	1	235884333	235884333	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon52	c.A7961G	p.Q2654R	.	.	.
RYR2	6262	broad.mit.edu	36	1	235908026	235908026	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon61	c.C8886A	p.F2962L	.	.	.
RYR2	6262	broad.mit.edu	36	1	235960187	235960187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon77	c.C10843T	p.R3615W	.	.	.
RYR2	6262	broad.mit.edu	36	1	236001993	236001993	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001035	exon86	c.C11616A	p.I3872I	.	.	.
RYR2	6262	broad.mit.edu	36	1	236008678	236008678	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon88	c.G11865T	p.Q3955H	.	.	.
RYR2	6262	broad.mit.edu	36	1	236015938	236015938	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon91	c.A13307C	p.K4436T	.	.	.
RYR2	6262	broad.mit.edu	36	1	236049018	236049018	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon101	c.C14493T	p.I4831I	.	.	.
ZP4	57829	broad.mit.edu	36	1	236115222	236115222	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021186	exon9	c.G1177T	p.D393Y	.	.	.
ZP4	57829	broad.mit.edu	36	1	236115797	236115797	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021186	exon7	c.C852T	p.S284S	.	.	.
TCEA3	6920	broad.mit.edu	36	1	23616441	23616441	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003196	exon4	c.G268T	p.G90X	.	.	.
E2F2	1870	broad.mit.edu	36	1	23709003	23709003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004091	exon7	c.G1270A	p.D424N	.	.	.
FMN2	56776	broad.mit.edu	36	1	238564104	238564104	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020066	exon13	c.T4717G	p.F1573V	.	.	.
KMO	8564	broad.mit.edu	36	1	239818722	239818722	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003679	exon12	c.G1065A	p.A355A	.	.	.
EXO1	9156	broad.mit.edu	36	1	240115382	240115382	+	Silent	SNP	G	A	A	rs61751859	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130398	exon15	c.G2355A	p.P785P	.	.	.
PLD5	200150	broad.mit.edu	36	1	240518347	240518347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195811	exon3	c.G249A	p.K83K	.	.	.
C1orf101	257044	broad.mit.edu	36	1	242790605	242790605	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173807	exon10	c.A1042T	p.R348X	.	.	.
C1orf101	257044	broad.mit.edu	36	1	242840189	242840189	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173807	exon19	c.A2428G	p.T810A	.	.	.
IL22RA1	58985	broad.mit.edu	36	1	24320095	24320095	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021258	exon7	c.C1512T	p.I504I	.	.	.
SMYD3	64754	broad.mit.edu	36	1	243979517	243979517	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022743	exon12	c.G1081T	p.E361X	.	.	.
CNST	163882	broad.mit.edu	36	1	244821499	244821499	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139459	exon2	c.C12T	p.S4S	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245080340	245080340	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015446	exon33	c.T5618G	p.V1873G	.	.	.
ZNF124	7678	broad.mit.edu	36	1	245387106	245387106	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003431	exon4	c.G255A	p.E85E	.	.	.
GRHL3	57822	broad.mit.edu	36	1	24541802	24541802	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198173	exon10	c.G1238A	p.R413Q	.	.	.
ZNF496	84838	broad.mit.edu	36	1	245558776	245558776	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032752	exon4	c.G406T	p.D136Y	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245653248	245653248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079821	exon4	c.G377A	p.R126K	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245655150	245655150	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079821	exon5	c.G1782T	p.K594N	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245666036	245666036	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079821	exon8	c.G2640T	p.K880N	.	.	.
NLRP3	114548	broad.mit.edu	36	1	245674613	245674613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079821	exon10	c.G2878A	p.D960N	.	.	.
OR6F1	343169	broad.mit.edu	36	1	245942631	245942631	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005286	exon1	c.T50G	p.F17C	.	.	.
OR1C1	26188	broad.mit.edu	36	1	245987522	245987522	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012353	exon1	c.C810T	p.S270S	.	.	.
OR14A16	284532	broad.mit.edu	36	1	246045450	246045450	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001966	exon1	c.C205A	p.L69I	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375775	246375775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004690	exon1	c.C703T	p.R235C	.	.	.
OR2M2	391194	broad.mit.edu	36	1	246410922	246410922	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004688	exon1	c.A1012G	p.K338E	.	.	.
NIPAL3	57185	broad.mit.edu	36	1	24641254	24641254	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020448	exon4	c.C285A	p.A95A	.	.	.
OR2M4	26245	broad.mit.edu	36	1	246469739	246469739	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017504	exon1	c.G886T	p.E296X	.	.	.
OR2T33	391195	broad.mit.edu	36	1	246502810	246502810	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004695	exon1	c.A930C	p.K310N	.	.	.
OR2T4	127074	broad.mit.edu	36	1	246592050	246592050	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004696	exon1	c.T545C	p.F182S	.	.	.
OR2T34	127068	broad.mit.edu	36	1	246804045	246804045	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001821	exon1	c.C637A	p.L213I	.	.	.
OR2T27	403239	broad.mit.edu	36	1	246880395	246880395	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001824	exon1	c.C414T	p.R138R	.	.	.
OR2T27	403239	broad.mit.edu	36	1	246880565	246880565	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001824	exon1	c.C244T	p.L82L	.	.	.
SH3BP5L	80851	broad.mit.edu	36	1	247073857	247073857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030645	exon6	c.G665A	p.S222N	.	.	.
SRRM1	10250	broad.mit.edu	36	1	24850632	24850632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005839	exon6	c.C667T	p.L223F	.	.	.
SYF2	25949	broad.mit.edu	36	1	25422401	25422401	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207170	exon6	c.C549A	p.F183L	.	.	.
RHD	6007	broad.mit.edu	36	1	25483756	25483756	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127691	exon2	c.C254A	p.A85E	.	.	.
TMEM50A	23585	broad.mit.edu	36	1	25539622	25539622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014313	exon2	c.C58T	p.R20C	.	.	.
TMEM50A	23585	broad.mit.edu	36	1	25550759	25550759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014313	exon4	c.C262A	p.L88M	.	.	.
MAN1C1	57134	broad.mit.edu	36	1	25885575	25885575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020379	exon2	c.C598T	p.R200C	.	.	.
FAM54B	56181	broad.mit.edu	36	1	26028708	26028708	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099627	exon6	c.G464T	p.R155M	.	.	.
C1orf135	79000	broad.mit.edu	36	1	26034516	26034516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024037	exon3	c.G629T	p.S210I	.	.	.
PAQR7	164091	broad.mit.edu	36	1	26062369	26062369	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178422	exon2	c.G549A	p.W183X	.	.	.
STMN1	3925	broad.mit.edu	36	1	26102813	26102813	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203399	exon3	c.C92A	p.S31Y	.	.	.
EXTL1	2134	broad.mit.edu	36	1	26228310	26228310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004455	exon2	c.C819T	p.C273C	.	.	.
EXTL1	2134	broad.mit.edu	36	1	26230276	26230276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004455	exon5	c.G1168A	p.A390T	.	.	.
EXTL1	2134	broad.mit.edu	36	1	26232921	26232921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004455	exon9	c.G1666A	p.A556T	.	.	.
TRIM63	84676	broad.mit.edu	36	1	26257535	26257535	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032588	exon5	c.A764C	p.K255T	.	.	.
PDIK1L	149420	broad.mit.edu	36	1	26321245	26321245	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152835	exon3	c.G616T	p.E206X	.	.	.
PDIK1L	149420	broad.mit.edu	36	1	26321349	26321349	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152835	exon3	c.C720A	p.I240I	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26972017	26972017	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139135	exon14	c.C3667T	p.R1223C	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26978137	26978137	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139135	exon20	c.C4510T	p.R1504X	.	.	.
PIGV	55650	broad.mit.edu	36	1	26993829	26993829	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017837	exon3	c.C717T	p.A239A	.	.	.
STX12	23673	broad.mit.edu	36	1	28018813	28018813	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177424	exon8	c.C715T	p.R239X	.	.	.
PTAFR	5724	broad.mit.edu	36	1	28349162	28349162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164721	exon3	c.G958A	p.A320T	.	.	.
PTAFR	5724	broad.mit.edu	36	1	28349460	28349460	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164721	exon3	c.G660A	p.Q220Q	.	.	.
DNAJC8	22826	broad.mit.edu	36	1	28400465	28400465	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014280	exon9	c.A643C	p.S215R	.	.	.
PHACTR4	65979	broad.mit.edu	36	1	28664905	28664905	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023923	exon4	c.C424A	p.L142I	.	.	.
RCC1	1104	broad.mit.edu	36	1	28736992	28736992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048195	exon11	c.C1203T	p.D401D	.	.	.
YTHDF2	51441	broad.mit.edu	36	1	28943052	28943052	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016258	exon4	c.G1683T	p.E561D	.	.	.
SRSF4	6429	broad.mit.edu	36	1	29347585	29347585	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005626	exon6	c.C1409A	p.S470Y	.	.	.
PTPRU	10076	broad.mit.edu	36	1	29524719	29524719	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005704	exon31	c.G4300A	p.D1434N	.	.	.
SDC3	9672	broad.mit.edu	36	1	31124062	31124062	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014654	exon2	c.C251T	p.S84L	.	.	.
ZCCHC17	51538	broad.mit.edu	36	1	31555562	31555562	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016505	exon2	c.A30C	p.E10D	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31936095	31936095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001856	exon6	c.C656T	p.S219L	.	.	.
COL16A1	1307	broad.mit.edu	36	1	31936297	31936297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001856	exon6	c.G454A	p.D152N	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32052715	32052715	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144569	exon2	c.A807G	p.G269G	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32052901	32052901	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144569	exon2	c.G621T	p.K207N	.	.	.
SPOCD1	90853	broad.mit.edu	36	1	32053511	32053511	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144569	exon2	c.C11T	p.A4V	.	.	.
PRDM16	63976	broad.mit.edu	36	1	3318517	3318517	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022114	exon9	c.C1896T	p.D632D	.	.	.
TRIM62	55223	broad.mit.edu	36	1	33397970	33397970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018207	exon3	c.C667T	p.R223C	.	.	.
ZSCAN20	7579	broad.mit.edu	36	1	33733489	33733489	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145238	exon8	c.G2958A	p.P986P	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33759666	33759666	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon67	c.C10149T	p.F3383F	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33819016	33819016	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon49	c.C7317A	p.S2439R	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33852732	33852732	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon40	c.A5972G	p.N1991S	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33884899	33884899	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon29	c.C4590T	p.S1530S	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33981470	33981470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon14	c.C2051T	p.T684I	.	.	.
C1orf94	84970	broad.mit.edu	36	1	34439176	34439176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032884	exon3	c.C656T	p.P219L	.	.	.
DLGAP3	58512	broad.mit.edu	36	1	35138347	35138347	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080418	exon2	c.G1222T	p.D408Y	.	.	.
DLGAP3	58512	broad.mit.edu	36	1	35142906	35142906	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080418	exon1	c.C666A	p.S222S	.	.	.
ZMYM1	79830	broad.mit.edu	36	1	35352055	35352055	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024772	exon10	c.C2037A	p.F679L	.	.	.
ZMYM1	79830	broad.mit.edu	36	1	35352467	35352467	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024772	exon10	c.C2449T	p.L817L	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35425235	35425235	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005066	exon9	c.G1940A	p.G647D	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35425423	35425423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005066	exon8	c.G1832A	p.R611Q	.	.	.
KIAA0319L	79932	broad.mit.edu	36	1	35709143	35709143	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024874	exon6	c.A1021C	p.T341P	.	.	.
TFAP2E	339488	broad.mit.edu	36	1	35828850	35828850	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178548	exon6	c.C933T	p.F311F	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36131370	36131370	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012199	exon4	c.G416A	p.R139Q	.	.	.
TRAPPC3	27095	broad.mit.edu	36	1	36378345	36378345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014408	exon2	c.C52T	p.L18F	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36527731	36527731	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005119	exon5	c.C1524T	p.S508S	.	.	.
C1orf113	79729	broad.mit.edu	36	1	36558037	36558037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024676	exon11	c.G853T	p.A285S	.	.	.
C1orf113	79729	broad.mit.edu	36	1	36558360	36558360	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024676	exon11	c.C1176A	p.F392L	.	.	.
CCDC27	148870	broad.mit.edu	36	1	3660596	3660596	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152492	exon2	c.C373T	p.R125X	.	.	.
CCDC27	148870	broad.mit.edu	36	1	3663214	3663214	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152492	exon4	c.G611T	p.R204I	.	.	.
CSF3R	1441	broad.mit.edu	36	1	36710851	36710851	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172313	exon7	c.C697T	p.R233W	.	.	.
CSF3R	1441	broad.mit.edu	36	1	36711673	36711673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172313	exon6	c.C623T	p.A208V	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3737618	3737618	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon13	c.C1688A	p.S563Y	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3741436	3741436	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon11	c.T1398A	p.P466P	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3755042	3755042	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon3	c.C277T	p.R93X	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3755156	3755156	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon3	c.C163T	p.R55X	.	.	.
MEAF6	64769	broad.mit.edu	36	1	37740009	37740009	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022756	exon5	c.G516T	p.K172N	.	.	.
SNIP1	79753	broad.mit.edu	36	1	37792374	37792374	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024700	exon1	c.G44T	p.R15I	.	.	.
GNL2	29889	broad.mit.edu	36	1	37805043	37805043	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013285	exon16	c.A2196C	p.X732Y	.	.	.
GNL2	29889	broad.mit.edu	36	1	37806494	37806494	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013285	exon14	c.A1920G	p.R640R	.	.	.
GNL2	29889	broad.mit.edu	36	1	37813863	37813863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013285	exon10	c.C1063T	p.R355C	.	.	.
GNL2	29889	broad.mit.edu	36	1	37830916	37830916	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013285	exon3	c.A228G	p.P76P	.	.	.
C1orf174	339448	broad.mit.edu	36	1	3797017	3797017	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207356	exon3	c.C594A	p.F198L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39322656	39322656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon3	c.C179T	p.S60L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39521719	39521719	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon10	c.C875T	p.S292L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39572803	39572803	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon1	c.C3276A	p.F1092L	.	.	.
MACF1	23499	broad.mit.edu	36	1	39573689	39573689	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon1	c.G4162T	p.E1388X	.	.	.
MACF1	23499	broad.mit.edu	36	1	39617524	39617524	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon50	c.G7153T	p.V2385L	.	.	.
KIAA0754	643314	broad.mit.edu	36	1	39649060	39649060	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015038	exon1	c.C536A	p.S179Y	.	.	.
PABPC4	8761	broad.mit.edu	36	1	39810840	39810840	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135653	exon2	c.C199T	p.R67W	.	.	.
NT5C1A	84618	broad.mit.edu	36	1	39899380	39899380	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032526	exon5	c.C699T	p.F233F	.	.	.
PPIE	10450	broad.mit.edu	36	1	39987310	39987310	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006112	exon8	c.C657T	p.F219F	.	.	.
TRIT1	54802	broad.mit.edu	36	1	40080159	40080159	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017646	exon11	c.C1248A	p.S416S	.	.	.
MYCL1	4610	broad.mit.edu	36	1	40136152	40136152	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033082	exon3	c.C664T	p.R222X	.	.	.
MFSD2A	84879	broad.mit.edu	36	1	40205183	40205183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136493	exon8	c.G958A	p.A320T	.	.	.
TMCO2	127391	broad.mit.edu	36	1	40489598	40489598	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008740	exon2	c.T294G	p.I98M	.	.	.
SMAP2	64744	broad.mit.edu	36	1	40648069	40648069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198979	exon4	c.G362A	p.R121Q	.	.	.
SMAP2	64744	broad.mit.edu	36	1	40654581	40654581	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198979	exon8	c.G813A	p.T271T	.	.	.
ZNF643	65243	broad.mit.edu	36	1	40701139	40701139	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023070	exon5	c.G896T	p.R299I	.	.	.
ZNF643	65243	broad.mit.edu	36	1	40701825	40701825	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023070	exon5	c.A1582C	p.N528H	.	.	.
RIMS3	9783	broad.mit.edu	36	1	40880061	40880061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014747	exon3	c.G124A	p.A42T	.	.	.
CTPS	1503	broad.mit.edu	36	1	41226933	41226933	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001905	exon5	c.G519T	p.E173D	.	.	.
CTPS	1503	broad.mit.edu	36	1	41240474	41240474	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001905	exon11	c.G1150T	p.A384S	.	.	.
CTPS	1503	broad.mit.edu	36	1	41245791	41245791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001905	exon14	c.G1380A	p.K460K	.	.	.
SLFNL1	200172	broad.mit.edu	36	1	41255962	41255962	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144990	exon3	c.T889G	p.F297V	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41822564	41822564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024503	exon4	c.C492T	p.F164F	.	.	.
GUCA2A	2980	broad.mit.edu	36	1	42401803	42401803	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033553	exon2	c.G141A	p.E47E	.	.	.
CCDC30	728621	broad.mit.edu	36	1	42783811	42783811	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080850	exon4	c.C399T	p.S133S	.	.	.
LEPRE1	64175	broad.mit.edu	36	1	42993839	42993839	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022356	exon6	c.T1137G	p.A379A	.	.	.
EBNA1BP2	10969	broad.mit.edu	36	1	43409096	43409096	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006824	exon4	c.G365A	p.R122H	.	.	.
WDR65	149465	broad.mit.edu	36	1	43448274	43448274	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152498	exon11	c.C2029A	p.L677I	.	.	.
TIE1	7075	broad.mit.edu	36	1	43556285	43556285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005424	exon17	c.C2877T	p.F959F	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43670540	43670540	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015284	exon22	c.G2588A	p.R863H	.	.	.
HYI	81888	broad.mit.edu	36	1	43690217	43690217	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031207	exon4	c.T481C	p.Y161H	.	.	.
PTPRF	5792	broad.mit.edu	36	1	43858743	43858743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130440	exon30	c.G5243A	p.R1748H	.	.	.
B4GALT2	8704	broad.mit.edu	36	1	44223179	44223179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005417	exon4	c.C605T	p.A202V	.	.	.
B4GALT2	8704	broad.mit.edu	36	1	44223817	44223817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005417	exon6	c.G905A	p.R302Q	.	.	.
SLC6A9	6536	broad.mit.edu	36	1	44235978	44235978	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201649	exon14	c.G1947A	p.K649K	.	.	.
KIF2C	11004	broad.mit.edu	36	1	44994478	44994478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006845	exon10	c.C959T	p.S320L	.	.	.
TESK2	10420	broad.mit.edu	36	1	45583702	45583702	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007170	exon11	c.C1113A	p.I371I	.	.	.
NASP	4678	broad.mit.edu	36	1	45852396	45852396	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195193	exon6	c.G1356A	p.E452E	.	.	.
CCDC17	149483	broad.mit.edu	36	1	45859245	45859245	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114938	exon11	c.C1516A	p.L506I	.	.	.
MAST2	23139	broad.mit.edu	36	1	46273092	46273092	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015112	exon29	c.C4164T	p.L1388L	.	.	.
MAST2	23139	broad.mit.edu	36	1	46273423	46273423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015112	exon29	c.C4495T	p.R1499C	.	.	.
MAST2	23139	broad.mit.edu	36	1	46273565	46273565	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015112	exon29	c.C4637A	p.P1546H	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47037491	47037491	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099772	exon1	c.A151G	p.T51A	.	.	.
AJAP1	55966	broad.mit.edu	36	1	4729800	4729800	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042478	exon3	c.T857C	p.I286T	.	.	.
AJAP1	55966	broad.mit.edu	36	1	4732373	4732373	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042478	exon4	c.C1091A	p.S364Y	.	.	.
CYP4A22	284541	broad.mit.edu	36	1	47381572	47381572	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010969	exon5	c.C555A	p.V185V	.	.	.
STIL	6491	broad.mit.edu	36	1	47539879	47539879	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003035	exon5	c.G394T	p.E132X	.	.	.
CMPK1	51727	broad.mit.edu	36	1	47606830	47606830	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016308	exon2	c.G274T	p.G92X	.	.	.
BEND5	79656	broad.mit.edu	36	1	48997377	48997377	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024603	exon3	c.C527A	p.A176D	.	.	.
ELAVL4	1996	broad.mit.edu	36	1	50439193	50439193	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144774	exon7	c.T857C	p.F286S	.	.	.
RNF11	26994	broad.mit.edu	36	1	51508310	51508310	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014372	exon2	c.G218T	p.R73I	.	.	.
EPS15	2060	broad.mit.edu	36	1	51660112	51660112	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159969	exon1	c.G105T	p.K35N	.	.	.
OSBPL9	114883	broad.mit.edu	36	1	51983809	51983809	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024586	exon5	c.G332T	p.G111V	.	.	.
NRD1	4898	broad.mit.edu	36	1	52027831	52027831	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101662	exon30	c.T3255C	p.V1085V	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52477604	52477604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004799	exon4	c.G1927A	p.D643N	.	.	.
ZFYVE9	9372	broad.mit.edu	36	1	52534156	52534156	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004799	exon12	c.T3252G	p.L1084L	.	.	.
CC2D1B	200014	broad.mit.edu	36	1	52594664	52594664	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032449	exon17	c.C1935T	p.G645G	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52696708	52696708	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015269	exon20	c.G3323A	p.R1108Q	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52733707	52733707	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015269	exon6	c.G1246T	p.D416Y	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52735279	52735279	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015269	exon5	c.G1164A	p.T388T	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52754189	52754189	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015269	exon3	c.G844T	p.E282X	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52763829	52763829	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015269	exon2	c.G712A	p.D238N	.	.	.
ZCCHC11	23318	broad.mit.edu	36	1	52764288	52764288	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015269	exon2	c.G253T	p.D85Y	.	.	.
ZYG11B	79699	broad.mit.edu	36	1	53018245	53018245	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024646	exon4	c.A1084C	p.I362L	.	.	.
PODN	127435	broad.mit.edu	36	1	53319102	53319102	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199081	exon10	c.G1714A	p.D572N	.	.	.
TMEM48	55706	broad.mit.edu	36	1	54039009	54039009	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018087	exon11	c.G1167A	p.T389T	.	.	.
LDLRAD1	388633	broad.mit.edu	36	1	54250443	54250443	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010978	exon4	c.A301C	p.T101P	.	.	.
DHCR24	1718	broad.mit.edu	36	1	55103657	55103657	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014762	exon6	c.G927T	p.E309D	.	.	.
USP24	23358	broad.mit.edu	36	1	55310122	55310122	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015306	exon67	c.T7753C	p.S2585P	 USP24,kidney,NS,Substitution - coding silent,+2 	.	.
PRKAA2	5563	broad.mit.edu	36	1	56932072	56932072	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006252	exon5	c.C522T	p.C174C	.	.	.
C1orf168	199920	broad.mit.edu	36	1	56958482	56958482	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004303	exon18	c.G2083A	p.D695N	.	.	.
C8A	731	broad.mit.edu	36	1	57144942	57144942	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000562	exon8	c.G1111T	p.D371Y	.	.	.
DAB1	1600	broad.mit.edu	36	1	57374833	57374833	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021080	exon6	c.G277T	p.G93X	.	.	.
OMA1	115209	broad.mit.edu	36	1	58719357	58719357	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145243	exon9	c.G1443A	p.T481T	.	.	.
HOOK1	51361	broad.mit.edu	36	1	60101057	60101057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015888	exon16	c.C1546T	p.R516C	.	.	.
NFIA	4774	broad.mit.edu	36	1	61621527	61621527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145512	exon8	c.C1112T	p.S371L	.	.	.
INADL	10207	broad.mit.edu	36	1	62004655	62004655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176877	exon4	c.G306A	p.S102S	.	.	.
L1TD1	54596	broad.mit.edu	36	1	62445170	62445170	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164835	exon4	c.G282T	p.E94D	.	.	.
KANK4	163782	broad.mit.edu	36	1	62491418	62491418	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181712	exon8	c.T2591C	p.I864T	.	.	.
DOCK7	85440	broad.mit.edu	36	1	62712266	62712266	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033407	exon47	c.C6094A	p.L2032I	.	.	.
ALG6	29929	broad.mit.edu	36	1	63652326	63652326	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013339	exon10	c.G823T	p.V275L	.	.	.
UBE2U	148581	broad.mit.edu	36	1	64443975	64443975	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152489	exon2	c.G132T	p.Q44H	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64841126	64841126	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020925	exon4	c.C307T	p.R103X	.	.	.
RAVER2	55225	broad.mit.edu	36	1	65051060	65051060	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018211	exon10	c.C1693T	p.R565W	.	.	.
AK4	205	broad.mit.edu	36	1	65464373	65464373	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005353	exon6	c.G597A	p.T199T	.	.	.
TAS1R1	80835	broad.mit.edu	36	1	6557540	6557540	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138697	exon3	c.A761G	p.E254G	.	.	.
DNAJC6	9829	broad.mit.edu	36	1	65630869	65630869	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014787	exon12	c.G1465A	p.A489T	.	.	.
C1orf141	400757	broad.mit.edu	36	1	67331567	67331567	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013674	exon7	c.G912A	p.Q304Q	.	.	.
C1orf141	400757	broad.mit.edu	36	1	67333645	67333645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013674	exon6	c.C464T	p.S155L	.	.	.
IL23R	149233	broad.mit.edu	36	1	67496909	67496909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144701	exon11	c.C1400T	p.S467L	.	.	.
IL23R	149233	broad.mit.edu	36	1	67497071	67497071	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144701	exon11	c.A1562T	p.N521I	.	.	.
IL12RB2	3595	broad.mit.edu	36	1	67610900	67610900	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001559	exon12	c.A1563C	p.P521P	.	.	.
IL12RB2	3595	broad.mit.edu	36	1	67634278	67634278	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001559	exon16	c.C2507A	p.S836Y	.	.	.
RPE65	6121	broad.mit.edu	36	1	68682809	68682809	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000329	exon5	c.T488G	p.I163S	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70224652	70224652	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020794	exon8	c.C812A	p.S271Y	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70274852	70274852	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020794	exon18	c.A2131G	p.T711A	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70276958	70276958	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020794	exon19	c.G2749A	p.E917K	.	.	.
PTGER3	5733	broad.mit.edu	36	1	71285151	71285151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198715	exon1	c.C698T	p.A233V	.	.	.
ZRANB2	9406	broad.mit.edu	36	1	71305154	71305154	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203350	exon9	c.T822C	p.Y274Y	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74394111	74394111	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105659	exon4	c.A601T	p.N201Y	.	.	.
ACADM	34	broad.mit.edu	36	1	75971183	75971183	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000016	exon4	c.C274A	p.P92T	.	.	.
MSH4	4438	broad.mit.edu	36	1	76035402	76035402	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002440	exon1	c.C144T	p.V48V	.	.	.
MSH4	4438	broad.mit.edu	36	1	76045366	76045366	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002440	exon3	c.C540A	p.N180K	.	.	.
MSH4	4438	broad.mit.edu	36	1	76116443	76116443	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002440	exon11	c.G1392T	p.K464N	.	.	.
AK5	26289	broad.mit.edu	36	1	77655928	77655928	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012093	exon8	c.T921C	p.D307D	.	.	.
AK5	26289	broad.mit.edu	36	1	77756951	77756951	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012093	exon11	c.G1184T	p.R395I	.	.	.
ZZZ3	26009	broad.mit.edu	36	1	77814387	77814387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015534	exon12	c.G2285A	p.R762Q	.	.	.
USP33	23032	broad.mit.edu	36	1	77935719	77935719	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015017	exon25	c.A2700C	p.E900D	.	.	.
USP33	23032	broad.mit.edu	36	1	77963952	77963952	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015017	exon12	c.G1312A	p.A438T	.	.	.
NEXN	91624	broad.mit.edu	36	1	78163494	78163494	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144573	exon6	c.G481T	p.A161S	.	.	.
GIPC2	54810	broad.mit.edu	36	1	78374002	78374002	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017655	exon6	c.G935A	p.R312Q	.	.	.
PTGFR	5737	broad.mit.edu	36	1	78736154	78736154	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039585	exon3	c.G806T	p.R269I	.	.	.
IFI44L	10964	broad.mit.edu	36	1	78873645	78873645	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006820	exon5	c.A759G	p.G253G	.	.	.
ELTD1	64123	broad.mit.edu	36	1	79176088	79176088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022159	exon6	c.C752T	p.T251M	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82188664	82188664	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon6	c.T1402C	p.F468L	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82229214	82229214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon20	c.G4009A	p.D1337N	.	.	.
TTLL7	79739	broad.mit.edu	36	1	84108249	84108249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024686	exon21	c.G2648T	p.R883I	.	.	.
SSX2IP	117178	broad.mit.edu	36	1	84885792	84885792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166294	exon13	c.C1676T	p.A559V	.	.	.
MCOLN2	255231	broad.mit.edu	36	1	85167836	85167836	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153259	exon13	c.C1657T	p.R553W	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85267445	85267445	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018298	exon7	c.G764T	p.R255I	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85272439	85272439	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018298	exon4	c.G480T	p.Q160H	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85283453	85283453	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018298	exon2	c.C179A	p.P60Q	.	.	.
WDR63	126820	broad.mit.edu	36	1	85368381	85368381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145172	exon22	c.G2530A	p.V844I	.	.	.
RERE	473	broad.mit.edu	36	1	8540079	8540079	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012102	exon6	c.C613T	p.R205X	.	.	.
SYDE2	84144	broad.mit.edu	36	1	85421210	85421210	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032184	exon3	c.A1703G	p.E568G	.	.	.
C1orf52	148423	broad.mit.edu	36	1	85490941	85490941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198077	exon3	c.C508T	p.R170C	.	.	.
BCL10	8915	broad.mit.edu	36	1	85509000	85509000	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003921	exon2	c.C235A	p.L79M	.	.	.
ZNHIT6	54680	broad.mit.edu	36	1	85916993	85916993	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170670	exon8	c.C1031A	p.S344Y	.	.	.
COL24A1	255631	broad.mit.edu	36	1	85968930	85968930	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152890	exon60	c.C5032T	p.L1678F	.	.	.
ODF2L	57489	broad.mit.edu	36	1	86623054	86623054	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007022	exon4	c.A265C	p.N89H	.	.	.
CLCA1	1179	broad.mit.edu	36	1	86731714	86731714	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001285	exon10	c.G1524A	p.V508V	.	.	.
CLCA4	22802	broad.mit.edu	36	1	86809441	86809441	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012128	exon8	c.G1276A	p.V426M	.	.	.
CCBL2	56267	broad.mit.edu	36	1	89221106	89221106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019610	exon2	c.G992A	p.R331Q	.	.	.
GBP4	115361	broad.mit.edu	36	1	89431645	89431645	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052941	exon4	c.T402C	p.A134A	.	.	.
GBP5	115362	broad.mit.edu	36	1	89502182	89502182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052942	exon9	c.G1187A	p.R396Q	.	.	.
GBP6	163351	broad.mit.edu	36	1	89618609	89618610	+	Missense_Mutation	DNP	CG	TA	TA	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198460	exon6	c.702_703TA	.	.	.	NA
GBP6	163351	broad.mit.edu	36	1	89622339	89622339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198460	exon10	c.G1568A	p.R523H	.	.	.
ZNF326	284695	broad.mit.edu	36	1	90255495	90255495	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182976	exon8	c.C958T	p.R320X	.	.	.
SLC2A5	6518	broad.mit.edu	36	1	9030311	9030311	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135585	exon4	c.C363T	p.V121V	.	.	.
SLC2A5	6518	broad.mit.edu	36	1	9040231	9040231	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135585	exon3	c.G156T	p.E52D	.	.	.
HFM1	164045	broad.mit.edu	36	1	91557469	91557469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017975	exon24	c.G2649T	p.K883N	.	.	.
HFM1	164045	broad.mit.edu	36	1	91617279	91617279	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017975	exon9	c.G1087T	p.E363X	.	.	.
BRDT	676	broad.mit.edu	36	1	92219514	92219514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207189	exon11	c.C1852T	p.R618C	.	.	.
EPHX4	253152	broad.mit.edu	36	1	92301264	92301264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173567	exon7	c.G922A	p.A308T	.	.	.
RPAP2	79871	broad.mit.edu	36	1	92574556	92574556	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024813	exon10	c.C1603A	p.L535I	.	.	.
EVI5	7813	broad.mit.edu	36	1	92864034	92864034	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005665	exon13	c.G1525T	p.E509X	.	.	.
EVI5	7813	broad.mit.edu	36	1	92942774	92942774	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005665	exon3	c.G397T	p.D133Y	.	.	.
MTF2	22823	broad.mit.edu	36	1	93348438	93348438	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007358	exon2	c.G69T	p.K23N	.	.	.
CCDC18	343099	broad.mit.edu	36	1	93445383	93445383	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206886	exon9	c.A1403C	p.K468T	.	.	.
CCDC18	343099	broad.mit.edu	36	1	93484251	93484251	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206886	exon22	c.G3337T	p.E1113X	.	.	.
FNBP1L	54874	broad.mit.edu	36	1	93785071	93785071	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024948	exon11	c.G1185A	p.E395E	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94114635	94114635	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014597	exon2	c.C1444A	p.L482M	.	.	.
DNTTIP2	30836	broad.mit.edu	36	1	94115235	94115235	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014597	exon2	c.G844A	p.E282K	.	.	.
GCLM	2730	broad.mit.edu	36	1	94134919	94134919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002061	exon5	c.C383T	p.A128V	.	.	.
ABCA4	24	broad.mit.edu	36	1	94252825	94252825	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon38	c.C5322A	p.V1774V	.	.	.
ABCA4	24	broad.mit.edu	36	1	94318788	94318788	+	Silent	SNP	G	T	T	rs61753056	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon8	c.C933A	p.T311T	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94415785	94415785	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004815	exon22	c.C2876T	p.A959V	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94439953	94439953	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004815	exon12	c.G1192T	p.E398X	.	.	.
SLC44A3	126969	broad.mit.edu	36	1	95102925	95102925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114106	exon11	c.C1277T	p.S426F	.	.	.
PTBP2	58155	broad.mit.edu	36	1	97007854	97007854	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021190	exon4	c.T123C	p.G41G	.	.	.
PTBP2	58155	broad.mit.edu	36	1	97015765	97015765	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021190	exon6	c.C469A	p.Q157K	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9718553	9718553	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014944	exon11	c.G1681A	p.E561K	.	.	.
DPYD	1806	broad.mit.edu	36	1	97833282	97833282	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000110	exon9	c.C879A	p.I293I	.	.	.
PALMD	54873	broad.mit.edu	36	1	99905830	99905830	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017734	exon3	c.C171T	p.S57S	.	.	.
RBP7	116362	broad.mit.edu	36	1	9998435	9998435	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052960	exon4	c.C363A	p.F121L	.	.	.
AGL	178	broad.mit.edu	36	1	100159805	100159805	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VCAM1	7412	broad.mit.edu	36	1	100963042	100963042	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OLFM3	118427	broad.mit.edu	36	1	102063160	102063160	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103185112	103185112	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103252748	103252748	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103264358	103264358	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NTNG1	22854	broad.mit.edu	36	1	107751815	107751815	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRPF38B	55119	broad.mit.edu	36	1	109040346	109040346	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
STXBP3	6814	broad.mit.edu	36	1	109138965	109138965	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GPSM2	29899	broad.mit.edu	36	1	109245925	109245925	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GPSM2	29899	broad.mit.edu	36	1	109247270	109247270	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SYPL2	284612	broad.mit.edu	36	1	109819859	109819859	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CSF1	1435	broad.mit.edu	36	1	110267304	110267304	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PTPN22	26191	broad.mit.edu	36	1	114177233	114177233	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114929740	114929740	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115289130	115289130	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CD101	9398	broad.mit.edu	36	1	117377997	117377997	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GDAP2	54834	broad.mit.edu	36	1	118250738	118250738	+	Intron	SNP	G	T	T	rs41276596	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12315863	12315863	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12320957	12320957	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
POLR3C	10623	broad.mit.edu	36	1	144309981	144309981	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NBPF11	200030	broad.mit.edu	36	1	146713201	146713201	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAM63A	55793	broad.mit.edu	36	1	149241256	149241256	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GABPB2	126626	broad.mit.edu	36	1	149336940	149336940	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
THEM4	117145	broad.mit.edu	36	1	150116094	150116094	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
VHLL	391104	broad.mit.edu	36	1	154535612	154535612	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155052244	155052244	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NTRK1	4914	broad.mit.edu	36	1	155111311	155111311	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155172558	155172558	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OR10K1	391109	broad.mit.edu	36	1	156701964	156701964	+	5'Flank	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IFI16	3428	broad.mit.edu	36	1	157281720	157281720	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	1	157550082	157550082	+	IGR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CASQ1	844	broad.mit.edu	36	1	158434036	158434036	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NUF2	83540	broad.mit.edu	36	1	161575896	161575896	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PBX1	5087	broad.mit.edu	36	1	163028349	163028349	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADCY10	55811	broad.mit.edu	36	1	166058996	166058996	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DCAF6	55827	broad.mit.edu	36	1	166239853	166239853	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIFAP3	22920	broad.mit.edu	36	1	168275063	168275063	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FMO1	2326	broad.mit.edu	36	1	169517737	169517737	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SLC9A11	284525	broad.mit.edu	36	1	171769364	171769364	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ATP13A2	23400	broad.mit.edu	36	1	17203915	17203915	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GAS5	60674	broad.mit.edu	36	1	172101145	172101145	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TNR	7143	broad.mit.edu	36	1	173595499	173595499	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIAA1614	57710	broad.mit.edu	36	1	179181349	179181349	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GLUL	2752	broad.mit.edu	36	1	180622013	180622013	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NMNAT2	23057	broad.mit.edu	36	1	181529562	181529562	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SMG7	9887	broad.mit.edu	36	1	181785515	181785515	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TPR	7175	broad.mit.edu	36	1	184554368	184554368	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C1orf27	54953	broad.mit.edu	36	1	184625342	184625342	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBR4	23352	broad.mit.edu	36	1	19360986	19360986	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CFHR3	10878	broad.mit.edu	36	1	195015538	195015538	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NEK7	140609	broad.mit.edu	36	1	196555157	196555157	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MIR181A1	406995	broad.mit.edu	36	1	197094867	197094867	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CAMSAP1L1	23271	broad.mit.edu	36	1	199067946	199067946	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CAMSAP1L1	23271	broad.mit.edu	36	1	199080521	199080521	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZC3H11A	9877	broad.mit.edu	36	1	202085788	202085788	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C1orf157	284573	broad.mit.edu	36	1	202276123	202276123	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PLA2G2C	391013	broad.mit.edu	36	1	20371867	20371867	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CR1	1378	broad.mit.edu	36	1	205861970	205861970	+	Intron	SNP	T	G	G	rs56004407	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RCOR3	55758	broad.mit.edu	36	1	209529136	209529136	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TATDN3	128387	broad.mit.edu	36	1	211037169	211037169	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212637872	212637872	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USH2A	7399	broad.mit.edu	36	1	213983130	213983130	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
USH2A	7399	broad.mit.edu	36	1	214239028	214239028	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TGFB2	7042	broad.mit.edu	36	1	216675927	216675927	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EPRS	2058	broad.mit.edu	36	1	218258408	218258408	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IARS2	55699	broad.mit.edu	36	1	218376884	218376884	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HHIPL2	79802	broad.mit.edu	36	1	220762857	220762857	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TAF1A	9015	broad.mit.edu	36	1	220809469	220809469	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NUP133	55746	broad.mit.edu	36	1	227655014	227655014	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230617995	230617995	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EPHB2	2048	broad.mit.edu	36	1	23095479	23095479	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ERO1LB	56605	broad.mit.edu	36	1	234462766	234462766	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RYR2	6262	broad.mit.edu	36	1	235853801	235853801	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PLD5	200150	broad.mit.edu	36	1	240354389	240354389	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AKT3	10000	broad.mit.edu	36	1	241735260	241735260	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYOM3	127294	broad.mit.edu	36	1	24260130	24260130	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HNRNPU	3192	broad.mit.edu	36	1	243084366	243084366	+	3'UTR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245085758	245085758	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GRHL3	57822	broad.mit.edu	36	1	24553450	24553450	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OR2M5	127059	broad.mit.edu	36	1	246375072	246375072	+	5'Flank	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SH3BP5L	80851	broad.mit.edu	36	1	247085568	247085568	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LCK	3932	broad.mit.edu	36	1	32518186	32518186	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AK2	204	broad.mit.edu	36	1	33259776	33259776	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZMYM6	9204	broad.mit.edu	36	1	35250770	35250770	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZMYM6	9204	broad.mit.edu	36	1	35257534	35257534	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C1orf216	127703	broad.mit.edu	36	1	35959176	35959176	+	5'Flank	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3732171	3732171	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDCA8	55143	broad.mit.edu	36	1	37946573	37946573	+	Intron	SNP	C	A	A	rs35705618	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COL9A2	1298	broad.mit.edu	36	1	40543966	40543966	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZMYND12	84217	broad.mit.edu	36	1	42673524	42673524	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TIE1	7075	broad.mit.edu	36	1	43550556	43550556	+	Intron	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43904010	43904010	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MAST2	23139	broad.mit.edu	36	1	46246546	46246546	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POMGNT1	55624	broad.mit.edu	36	1	46427216	46427216	+	3'UTR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CYP4Z1	199974	broad.mit.edu	36	1	47320592	47320592	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OSBPL9	114883	broad.mit.edu	36	1	52022167	52022167	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NRD1	4898	broad.mit.edu	36	1	52029261	52029261	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MRPL37	51253	broad.mit.edu	36	1	54454608	54454608	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYSM1	114803	broad.mit.edu	36	1	58923408	58923408	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64904445	64904445	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LEPR	3953	broad.mit.edu	36	1	65808743	65808743	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LEPR	3953	broad.mit.edu	36	1	65809078	65809078	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6621019	6621019	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SGIP1	84251	broad.mit.edu	36	1	66932746	66932746	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LRRC7	57554	broad.mit.edu	36	1	70256978	70256978	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74474362	74474362	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74606248	74606248	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82194337	82194337	+	Intron	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SH3GLB1	51100	broad.mit.edu	36	1	86966721	86966721	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GBP5	115362	broad.mit.edu	36	1	89500680	89500680	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GBP6	163351	broad.mit.edu	36	1	89621905	89621905	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BRDT	676	broad.mit.edu	36	1	92218969	92218969	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BRDT	676	broad.mit.edu	36	1	92219405	92219405	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MKKS	8195	broad.mit.edu	36	20	10341532	10341532	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018848	exon3	c.G631T	p.D211Y	.	.	.
JAG1	182	broad.mit.edu	36	20	10569476	10569476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000214	exon25	c.G3154A	p.V1052I	.	.	.
ISM1	140862	broad.mit.edu	36	20	13208470	13208470	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080826	exon3	c.C568A	p.L190I	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13795451	13795451	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025229	exon15	c.T1301G	p.F434C	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13842461	13842461	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025229	exon5	c.C516A	p.S172S	.	.	.
MACROD2	140733	broad.mit.edu	36	20	13930984	13930984	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080676	exon2	c.G97T	p.D33Y	.	.	.
FLRT3	23767	broad.mit.edu	36	20	14254584	14254584	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198391	exon3	c.A1569C	p.K523N	.	.	.
FLRT3	23767	broad.mit.edu	36	20	14255246	14255246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198391	exon3	c.C907T	p.R303C	.	.	.
SIRPD	128646	broad.mit.edu	36	20	1480601	1480601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178460	exon2	c.G157A	p.V53I	.	.	.
SIRPG	55423	broad.mit.edu	36	20	1565063	1565063	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039508	exon3	c.C519A	p.F173L	.	.	.
MACROD2	140733	broad.mit.edu	36	20	15861977	15861977	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033087	exon7	c.G127T	p.D43Y	.	.	.
DSTN	11034	broad.mit.edu	36	20	17529461	17529461	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006870	exon2	c.G82T	p.E28X	.	.	.
DSTN	11034	broad.mit.edu	36	20	17529541	17529541	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006870	exon2	c.G162T	p.E54D	.	.	.
RRBP1	6238	broad.mit.edu	36	20	17556210	17556210	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042576	exon11	c.G1568T	p.R523I	.	.	.
RBBP9	10741	broad.mit.edu	36	20	18418507	18418507	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006606	exon5	c.A462G	p.E154E	.	.	.
PDYN	5173	broad.mit.edu	36	20	1909213	1909213	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190899	exon3	c.G521A	p.R174H	.	.	.
C20orf26	26074	broad.mit.edu	36	20	20027416	20027416	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015585	exon8	c.G817A	p.V273I	.	.	.
RALGAPA2	57186	broad.mit.edu	36	20	20340720	20340720	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020343	exon38	c.C5568T	p.F1856F	.	.	.
XRN2	22803	broad.mit.edu	36	20	21285284	21285284	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012255	exon23	c.G2179T	p.E727X	.	.	.
TGM3	7053	broad.mit.edu	36	20	2238958	2238958	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003245	exon3	c.G316A	p.A106T	.	.	.
TGM3	7053	broad.mit.edu	36	20	2269213	2269213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003245	exon13	c.G2068A	p.D690N	.	.	.
GZF1	64412	broad.mit.edu	36	20	23294071	23294071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022482	exon1	c.G1051A	p.D351N	.	.	.
CSTL1	128817	broad.mit.edu	36	20	23372620	23372620	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138283	exon3	c.A269C	p.K90T	.	.	.
CST11	140880	broad.mit.edu	36	20	23380486	23380486	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130794	exon2	c.G300A	p.T100T	.	.	.
CST3	1471	broad.mit.edu	36	20	23562559	23562559	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000099	exon3	c.C435T	p.D145D	.	.	.
ABHD12	26090	broad.mit.edu	36	20	25252034	25252034	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015600	exon3	c.C349A	p.P117T	.	.	.
NINL	22981	broad.mit.edu	36	20	25405555	25405555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025176	exon17	c.C2372T	p.A791V	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2724058	2724058	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184699	exon12	c.G1503T	p.M501I	.	.	.
CPXM1	56265	broad.mit.edu	36	20	2725708	2725708	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184699	exon7	c.T865C	p.S289P	.	.	.
DEFB119	245932	broad.mit.edu	36	20	29440625	29440625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153323	exon2	c.G131A	p.R44Q	.	.	.
TPX2	22974	broad.mit.edu	36	20	29830333	29830333	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012112	exon10	c.G939T	p.K313N	.	.	.
TPX2	22974	broad.mit.edu	36	20	29830416	29830416	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012112	exon10	c.G1022T	p.R341I	.	.	.
PDRG1	81572	broad.mit.edu	36	20	30000323	30000323	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030815	exon3	c.A187G	p.N63D	.	.	.
C20orf160	140706	broad.mit.edu	36	20	30074177	30074177	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080625	exon6	c.C987T	p.Y329Y	.	.	.
KIF3B	9371	broad.mit.edu	36	20	30362507	30362507	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004798	exon2	c.G1266T	p.E422D	.	.	.
ASXL1	171023	broad.mit.edu	36	20	30417914	30417914	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164603	exon2	c.G124T	p.G42X	.	.	.
FASTKD5	60493	broad.mit.edu	36	20	3075480	3075480	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021826	exon2	c.G2237A	p.R746Q	.	.	.
DNMT3B	1789	broad.mit.edu	36	20	30852337	30852337	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175848	exon17	c.C1881T	p.G627G	.	.	.
BPIL3	128859	broad.mit.edu	36	20	31087084	31087084	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174897	exon6	c.T522C	p.C174C	.	.	.
C20orf71	128861	broad.mit.edu	36	20	31276694	31276694	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178466	exon4	c.C516A	p.V172V	.	.	.
C20orf114	92747	broad.mit.edu	36	20	31354396	31354396	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033197	exon11	c.T995A	p.L332Q	.	.	.
CDK5RAP1	51654	broad.mit.edu	36	20	31431119	31431119	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016082	exon8	c.A646C	p.S216R	.	.	.
SLC4A11	83959	broad.mit.edu	36	20	3163509	3163509	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174089	exon3	c.C120T	p.F40F	.	.	.
CBFA2T2	9139	broad.mit.edu	36	20	31681247	31681247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032999	exon8	c.G1094A	p.R365H	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3181310	3181310	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon37	c.G3442T	p.D1148Y	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3182400	3182400	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon36	c.C3393A	p.F1131L	.	.	.
EIF2S2	8894	broad.mit.edu	36	20	32156910	32156910	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003908	exon2	c.G118T	p.E40X	.	.	.
AHCY	191	broad.mit.edu	36	20	32336980	32336980	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161766	exon9	c.A1010G	p.Q337R	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3243726	3243726	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon20	c.A1632T	p.E544D	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32792454	32792454	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014071	exon11	c.C5267A	p.S1756Y	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32794095	32794095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014071	exon11	c.C3626T	p.P1209L	.	.	.
GGT7	2686	broad.mit.edu	36	20	32914372	32914372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178026	exon3	c.G463A	p.E155K	.	.	.
GSS	2937	broad.mit.edu	36	20	32980389	32980389	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000178	exon13	c.A1328C	p.K443T	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3302717	3302717	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009984	exon6	c.G590A	p.G197E	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33029513	33029513	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020884	exon5	c.G170A	p.R57H	.	.	.
UQCC	55245	broad.mit.edu	36	20	33435285	33435285	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199487	exon3	c.G195A	p.Q65Q	.	.	.
CEP250	11190	broad.mit.edu	36	20	33517313	33517313	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon7	c.G362A	p.R121Q	.	.	.
CEP250	11190	broad.mit.edu	36	20	33547884	33547884	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon25	c.C3232T	p.R1078X	.	.	.
CEP250	11190	broad.mit.edu	36	20	33553732	33553732	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon30	c.C4121A	p.A1374D	.	.	.
CEP250	11190	broad.mit.edu	36	20	33554942	33554942	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon30	c.G5331T	p.E1777D	.	.	.
CPNE1	8904	broad.mit.edu	36	20	33678617	33678617	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152927	exon15	c.C1235T	p.S412L	.	.	.
CPNE1	8904	broad.mit.edu	36	20	33678702	33678702	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152927	exon15	c.C1150T	p.R384C	.	.	.
RBM39	9584	broad.mit.edu	36	20	33783454	33783454	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004902	exon4	c.G119A	p.S40N	.	.	.
C20orf152	140894	broad.mit.edu	36	20	34075021	34075021	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080834	exon11	c.G1341A	p.R447R	.	.	.
C20orf132	140699	broad.mit.edu	36	20	35209717	35209717	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_213632	exon8	c.C980T	p.A327V	.	.	.
ATRN	8455	broad.mit.edu	36	20	3567484	3567484	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139321	exon27	c.C3952T	p.R1318X	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36597214	36597214	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020336	exon16	c.G2329T	p.D777Y	.	.	.
TBC1D20	128637	broad.mit.edu	36	20	367812	367812	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144628	exon7	c.T896G	p.F299C	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36786856	36786856	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080552	exon1	c.C75T	p.S25S	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36964747	36964747	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172735	exon6	c.C594T	p.N198N	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36968073	36968073	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015568	exon7	c.C744T	p.L248L	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37013613	37013613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030919	exon4	c.G884A	p.G295D	.	.	.
FAM83D	81610	broad.mit.edu	36	20	37014224	37014224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030919	exon4	c.G1495A	p.V499I	.	.	.
DHX35	60625	broad.mit.edu	36	20	37056936	37056936	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190809	exon7	c.A548G	p.D183G	.	.	.
TOP1	7150	broad.mit.edu	36	20	39138280	39138280	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003286	exon4	c.G211T	p.D71Y	.	.	.
LPIN3	64900	broad.mit.edu	36	20	39414704	39414704	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022896	exon10	c.A1408T	p.N470Y	.	.	.
CHD6	84181	broad.mit.edu	36	20	39483221	39483221	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon31	c.T5468G	p.F1823C	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40164196	40164196	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon27	c.C3753A	p.I1251I	.	.	.
SRSF6	6431	broad.mit.edu	36	20	41522271	41522271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006275	exon4	c.G566A	p.R189Q	.	.	.
CSNK2A1	1457	broad.mit.edu	36	20	416211	416211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001895	exon11	c.G833A	p.R278Q	.	.	.
MYBL2	4605	broad.mit.edu	36	20	41764786	41764786	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002466	exon8	c.C1194T	p.V398V	.	.	.
GDAP1L1	78997	broad.mit.edu	36	20	42341221	42341221	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024034	exon6	c.C971T	p.S324L	.	.	.
HNF4A	3172	broad.mit.edu	36	20	42481881	42481881	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030003	exon7	c.C777T	p.I259I	.	.	.
YWHAB	7529	broad.mit.edu	36	20	42963709	42963709	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139323	exon2	c.G121A	p.E41K	.	.	.
TOMM34	10953	broad.mit.edu	36	20	43005197	43005197	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006809	exon7	c.G897T	p.K299N	.	.	.
SEMG2	6407	broad.mit.edu	36	20	43283965	43283965	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003008	exon2	c.C278T	p.A93V	.	.	.
RBPJL	11317	broad.mit.edu	36	20	43373646	43373646	+	Missense_Mutation	SNP	C	A	A	rs2743328	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014276	exon4	c.C261A	p.F87L	.	.	.
WFDC6	140870	broad.mit.edu	36	20	43600119	43600119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080827	exon2	c.C120T	p.C40C	.	.	.
WFDC9	259240	broad.mit.edu	36	20	43670192	43670192	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147198	exon5	c.G241T	p.E81X	.	.	.
WFDC10A	140832	broad.mit.edu	36	20	43691909	43691909	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080753	exon1	c.C43T	p.L15L	.	.	.
ZSWIM3	140831	broad.mit.edu	36	20	43938864	43938864	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080752	exon2	c.G260T	p.R87I	.	.	.
ZSWIM1	90204	broad.mit.edu	36	20	43945136	43945136	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080603	exon2	c.C498A	p.V166V	.	.	.
C20orf165	128497	broad.mit.edu	36	20	43948597	43948597	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080608	exon2	c.C650A	p.S217Y	.	.	.
CTSA	5476	broad.mit.edu	36	20	43953764	43953764	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000308	exon2	c.C204A	p.Y68X	.	.	.
PLTP	5360	broad.mit.edu	36	20	43971586	43971586	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006227	exon5	c.A461G	p.H154R	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44098825	44098825	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020708	exon5	c.G465A	p.T155T	.	.	.
SLC12A5	57468	broad.mit.edu	36	20	44113869	44113869	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020708	exon18	c.G2330A	p.R777H	.	.	.
ELMO2	63916	broad.mit.edu	36	20	44435467	44435467	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182764	exon15	c.C1394T	p.A465V	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44564279	44564279	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018102	exon5	c.G1106T	p.R369I	.	.	.
ZMYND8	23613	broad.mit.edu	36	20	45308322	45308322	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012408	exon14	c.G2121T	p.K707N	.	.	.
PREX1	57580	broad.mit.edu	36	20	46700965	46700965	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon23	c.C2691T	p.F897F	.	.	.
PREX1	57580	broad.mit.edu	36	20	46708130	46708130	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon17	c.A1925C	p.K642T	.	.	.
PREX1	57580	broad.mit.edu	36	20	46750767	46750767	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020820	exon7	c.C848T	p.A283V	.	.	.
CSE1L	1434	broad.mit.edu	36	20	47122544	47122544	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001316	exon10	c.A969C	p.S323S	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47298252	47298252	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021035	exon14	c.A4716G	p.Q1572Q	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47313389	47313389	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021035	exon6	c.T2190G	p.H730Q	.	.	.
ZNFX1	57169	broad.mit.edu	36	20	47314747	47314747	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021035	exon5	c.C2064A	p.I688I	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47423792	47423792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004975	exon2	c.C1712T	p.P571L	.	.	.
PTGIS	5740	broad.mit.edu	36	20	47563044	47563044	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000961	exon8	c.G1186T	p.E396X	.	.	.
SLC9A8	23315	broad.mit.edu	36	20	47936785	47936785	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015266	exon15	c.C1581T	p.F527F	.	.	.
SLC9A8	23315	broad.mit.edu	36	20	47937793	47937793	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015266	exon16	c.C1659A	p.I553I	.	.	.
SPATA2	9825	broad.mit.edu	36	20	47956731	47956731	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006038	exon3	c.G395A	p.R132Q	.	.	.
TMEM189-UBE2V1	387522	broad.mit.edu	36	20	48146666	48146666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021988	exon2	c.G190A	p.E64K	.	.	.
TMEM189-UBE2V1	387522	broad.mit.edu	36	20	48179577	48179577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199129	exon4	c.G391A	p.D131N	.	.	.
ADNP	23394	broad.mit.edu	36	20	48941562	48941562	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015339	exon5	c.C3096A	p.S1032S	.	.	.
KCNG1	3755	broad.mit.edu	36	20	49059739	49059739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002237	exon2	c.C544T	p.R182W	.	.	.
ATP9A	10079	broad.mit.edu	36	20	49744008	49744008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006045	exon7	c.G588A	p.T196T	.	.	.
SALL4	57167	broad.mit.edu	36	20	49841096	49841096	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020436	exon2	c.T1333C	p.F445L	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50215960	50215960	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199426	exon3	c.G292T	p.E98X	.	.	.
PCNA	5111	broad.mit.edu	36	20	5047478	5047478	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002592	exon3	c.G256T	p.D86Y	.	.	.
CDS2	8760	broad.mit.edu	36	20	5114428	5114428	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003818	exon9	c.G784T	p.G262C	.	.	.
TSHZ2	128553	broad.mit.edu	36	20	51305189	51305189	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193421	exon2	c.C1776A	p.A592A	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51621746	51621746	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006526	exon4	c.A3091C	p.N1031H	.	.	.
MC3R	4159	broad.mit.edu	36	20	54257631	54257631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019888	exon1	c.G325A	p.E109K	.	.	.
CSTF1	1477	broad.mit.edu	36	20	54406109	54406109	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033521	exon4	c.C450A	p.V150V	.	.	.
GPCPD1	56261	broad.mit.edu	36	20	5514888	5514888	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019593	exon5	c.G259T	p.V87F	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55524183	55524183	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080618	exon6	c.G1173A	p.T391T	.	.	.
ZBP1	81030	broad.mit.edu	36	20	55623427	55623427	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160417	exon4	c.C424T	p.R142X	.	.	.
RAB22A	57403	broad.mit.edu	36	20	56361762	56361762	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020673	exon4	c.C226T	p.R76X	.	.	.
RAB22A	57403	broad.mit.edu	36	20	56361992	56361992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020673	exon5	c.C369T	p.I123I	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56469710	56469710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153360	exon4	c.G1048A	p.E350K	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57202316	57202316	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178457	exon1	c.G2847T	p.E949D	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57262418	57262418	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178457	exon5	c.C4259A	p.S1420Y	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57775689	57775689	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199505	exon5	c.C586T	p.P196S	.	.	.
PHACTR3	116154	broad.mit.edu	36	20	57782755	57782755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199505	exon7	c.C980T	p.T327M	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57885906	57885906	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014258	exon32	c.G3079T	p.D1027Y	.	.	.
C20orf177	63939	broad.mit.edu	36	20	57952939	57952939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190826	exon5	c.C546T	p.I182I	.	.	.
C20orf197	284756	broad.mit.edu	36	20	58079228	58079228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173644	exon4	c.G251A	p.G84E	.	.	.
CHGB	1114	broad.mit.edu	36	20	5845562	5845562	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001819	exon3	c.A187T	p.T63S	.	.	.
CHGB	1114	broad.mit.edu	36	20	5852743	5852743	+	Silent	SNP	C	T	T	rs56291961	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001819	exon4	c.C1953T	p.D651D	.	.	.
CDH4	1002	broad.mit.edu	36	20	59931929	59931929	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon10	c.C1400A	p.A467D	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60983443	60983443	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193369	exon16	c.C4310T	p.A1437V	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60992768	60992768	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193369	exon15	c.T3530G	p.F1177C	.	.	.
DIDO1	11083	broad.mit.edu	36	20	60992905	60992905	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193369	exon15	c.C3393T	p.V1131V	.	.	.
DIDO1	11083	broad.mit.edu	36	20	61007860	61007860	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193369	exon6	c.C1412A	p.A471D	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892249	61892249	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025224	exon2	c.C306A	p.V102V	.	.	.
HAO1	54363	broad.mit.edu	36	20	7863205	7863205	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017545	exon2	c.G215T	p.S72I	.	.	.
TMX4	56255	broad.mit.edu	36	20	7911216	7911216	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021156	exon8	c.G732A	p.A244A	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8657737	8657737	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015192	exon18	c.A1804G	p.T602A	.	.	.
DEFB127	140850	broad.mit.edu	36	20	87570	87570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139074	exon2	c.C205T	p.P69S	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9364235	9364235	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000933	exon25	c.G2517T	p.K839N	.	.	.
C20orf103	24141	broad.mit.edu	36	20	9446737	9446737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199897	exon4	c.G394A	p.A132T	.	.	.
PAK7	57144	broad.mit.edu	36	20	9508824	9508824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177990	exon4	c.C958T	p.R320C	.	.	.
ESF1	51575	broad.mit.edu	36	20	13704924	13704924	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C20orf12	55184	broad.mit.edu	36	20	18362295	18362295	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SEC23B	10483	broad.mit.edu	36	20	18479827	18479827	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SUN5	140732	broad.mit.edu	36	20	31035252	31035252	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SUN5	140732	broad.mit.edu	36	20	31041171	31041171	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C20orf194	25943	broad.mit.edu	36	20	3259286	3259286	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36583764	36583764	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IFT52	51098	broad.mit.edu	36	20	41686107	41686107	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
WFDC8	90199	broad.mit.edu	36	20	43617749	43617749	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ELMO2	63916	broad.mit.edu	36	20	44437421	44437421	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARFGEF2	10564	broad.mit.edu	36	20	47081986	47081986	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF217	7764	broad.mit.edu	36	20	51628274	51628274	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GPCPD1	56261	broad.mit.edu	36	20	5532998	5532998	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RAE1	8480	broad.mit.edu	36	20	55362599	55362599	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57922484	57922484	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SYCP2	10388	broad.mit.edu	36	20	57923604	57923604	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
POTED	317754	broad.mit.edu	36	21	13904830	13904830	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174981	exon1	c.G410A	p.R137Q	.	.	.
POTED	317754	broad.mit.edu	36	21	13922606	13922606	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174981	exon7	c.T1159C	p.S387P	.	.	.
POTED	317754	broad.mit.edu	36	21	13935567	13935567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174981	exon11	c.C1564A	p.L522I	.	.	.
NRIP1	8204	broad.mit.edu	36	21	15260916	15260916	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003489	exon4	c.C1469A	p.S490Y	.	.	.
NRIP1	8204	broad.mit.edu	36	21	15262063	15262063	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003489	exon4	c.T322G	p.L108V	.	.	.
USP25	29761	broad.mit.edu	36	21	16057092	16057092	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013396	exon2	c.G57A	p.T19T	.	.	.
C21orf91	54149	broad.mit.edu	36	21	18089452	18089452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100420	exon4	c.C671T	p.S224L	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18666452	18666452	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002772	exon6	c.T593C	p.I198T	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18677853	18677853	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002772	exon4	c.T458C	p.V153A	.	.	.
TMPRSS15	5651	broad.mit.edu	36	21	18692123	18692123	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002772	exon3	c.C288A	p.I96I	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21629765	21629765	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004540	exon7	c.G807A	p.R269R	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21668067	21668067	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004540	exon9	c.G1058T	p.R353L	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21760909	21760909	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004540	exon13	c.T1766C	p.L589S	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21803046	21803046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004540	exon16	c.C2081T	p.T694M	.	.	.
GABPA	2551	broad.mit.edu	36	21	26039499	26039499	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197297	exon3	c.C185A	p.S62Y	.	.	.
GABPA	2551	broad.mit.edu	36	21	26058959	26058959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197297	exon9	c.C1126T	p.R376C	.	.	.
APP	351	broad.mit.edu	36	21	26249863	26249863	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201414	exon10	c.C1311T	p.F437F	.	.	.
ADAMTS5	11096	broad.mit.edu	36	21	27260114	27260114	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007038	exon1	c.C468T	p.F156F	.	.	.
RWDD2B	10069	broad.mit.edu	36	21	29302676	29302676	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016940	exon2	c.G205T	p.D69Y	.	.	.
CCT8	10694	broad.mit.edu	36	21	29359295	29359295	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006585	exon7	c.C627T	p.G209G	.	.	.
BACH1	571	broad.mit.edu	36	21	29620556	29620556	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001186	exon3	c.G540T	p.Q180H	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29881742	29881742	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175611	exon11	c.C1563T	p.Y521Y	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29945336	29945336	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175611	exon6	c.G927A	p.E309E	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29988224	29988224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175611	exon2	c.C148T	p.P50S	.	.	.
CLDN17	26285	broad.mit.edu	36	21	30460469	30460469	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012131	exon1	c.G338T	p.R113M	.	.	.
CLDN8	9073	broad.mit.edu	36	21	30509464	30509464	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199328	exon1	c.C651T	p.S217S	.	.	.
KRTAP26-1	388818	broad.mit.edu	36	21	30613919	30613919	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203405	exon1	c.C306A	p.F102L	.	.	.
KRTAP19-1	337882	broad.mit.edu	36	21	30774250	30774250	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181607	exon1	c.C258A	p.F86L	.	.	.
KRTAP19-5	337972	broad.mit.edu	36	21	30796153	30796153	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181611	exon1	c.G127T	p.G43C	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31448565	31448565	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon18	c.C3042A	p.P1014P	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31511850	31511850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon10	c.C2032T	p.R678C	 TIAM1,large_intestine,colon,Substitution - Missense,0 	.	.
TIAM1	7074	broad.mit.edu	36	21	31519917	31519917	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon8	c.A1805G	p.D602G	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31560589	31560589	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon5	c.G571T	p.E191X	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31561114	31561114	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon5	c.G46T	p.E16X	.	.	.
SFRS15	57466	broad.mit.edu	36	21	31987651	31987651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145444	exon11	c.G1295A	p.R432Q	.	.	.
HUNK	30811	broad.mit.edu	36	21	32293033	32293033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014586	exon11	c.C1810T	p.P604S	.	.	.
SYNJ1	8867	broad.mit.edu	36	21	32944517	32944517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003895	exon23	c.G3002A	p.R1001Q	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33032419	33032419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016631	exon16	c.G2417A	p.R806Q	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33037894	33037894	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016631	exon14	c.G2233T	p.D745Y	.	.	.
GCFC1	94104	broad.mit.edu	36	21	33042801	33042801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016631	exon11	c.G1803T	p.Q601H	.	.	.
IFNAR1	3454	broad.mit.edu	36	21	33649637	33649637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000629	exon11	c.C1586T	p.S529F	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33782526	33782526	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017833	exon2	c.G1045T	p.E349X	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33782981	33782981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017833	exon2	c.C590T	p.T197M	.	.	.
DNAJC28	54943	broad.mit.edu	36	21	33783420	33783420	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017833	exon2	c.G151T	p.E51X	.	.	.
GART	2618	broad.mit.edu	36	21	33823074	33823074	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136006	exon8	c.C763A	p.L255I	.	.	.
SON	6651	broad.mit.edu	36	21	33847034	33847034	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032195	exon3	c.G3627A	p.S1209S	.	.	.
DONSON	29980	broad.mit.edu	36	21	33875508	33875508	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017613	exon8	c.T1320G	p.A440A	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34066441	34066441	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001132	exon12	c.C1249T	p.R417W	.	.	.
ATP5O	539	broad.mit.edu	36	21	34198122	34198122	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001697	exon6	c.A515C	p.K172T	.	.	.
KCNE1	3753	broad.mit.edu	36	21	34743498	34743498	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127668	exon3	c.G305A	p.S102N	.	.	.
RCAN1	1827	broad.mit.edu	36	21	34820895	34820895	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203418	exon1	c.A23G	p.Y8C	.	.	.
TTC3	7267	broad.mit.edu	36	21	37389601	37389601	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003316	exon9	c.G769T	p.A257S	.	.	.
TTC3	7267	broad.mit.edu	36	21	37438718	37438718	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003316	exon21	c.T1796C	p.F599S	.	.	.
TTC3	7267	broad.mit.edu	36	21	37459810	37459810	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003316	exon33	c.A3424G	p.T1142A	.	.	.
TTC3	7267	broad.mit.edu	36	21	37476991	37476991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003316	exon36	c.G4663A	p.E1555K	.	.	.
TTC3	7267	broad.mit.edu	36	21	37495662	37495662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003316	exon46	c.C5995T	p.R1999C	.	.	.
DYRK1A	1859	broad.mit.edu	36	21	37806087	37806087	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001396	exon11	c.C1675T	p.R559C	.	.	.
LCA5L	150082	broad.mit.edu	36	21	39700016	39700016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152505	exon10	c.C1675T	p.L559F	.	.	.
SH3BGR	6450	broad.mit.edu	36	21	39745890	39745890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007341	exon1	c.G187A	p.E63K	.	.	.
B3GALT5	10317	broad.mit.edu	36	21	39954805	39954805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033171	exon4	c.C449T	p.A150V	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40349535	40349535	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon29	c.G5022A	p.T1674T	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40482993	40482993	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon12	c.C2399T	p.T800M	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40632051	40632051	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon8	c.C1630T	p.L544F	.	.	.
PLAC4	191585	broad.mit.edu	36	21	41473410	41473410	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182832	exon1	c.C16T	p.R6C	.	.	.
BACE2	25825	broad.mit.edu	36	21	41537197	41537197	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138991	exon5	c.T772G	p.L258V	.	.	.
MX2	4600	broad.mit.edu	36	21	41671654	41671654	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002463	exon3	c.C318A	p.S106S	.	.	.
MX1	4599	broad.mit.edu	36	21	41729783	41729783	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144925	exon8	c.C255T	p.S85S	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42095977	42095977	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022115	exon30	c.C4005T	p.G1335G	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42119471	42119471	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022115	exon20	c.C2641T	p.R881X	.	.	.
PRDM15	63977	broad.mit.edu	36	21	42150414	42150414	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022115	exon11	c.C1323T	p.F441F	.	.	.
ZNF295	49854	broad.mit.edu	36	21	42286665	42286665	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098403	exon3	c.A609C	p.L203F	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42589352	42589352	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207174	exon15	c.C1815T	p.F605F	.	.	.
UBASH3A	53347	broad.mit.edu	36	21	42740361	42740361	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001895	exon14	c.C1860A	p.I620I	.	.	.
RSPH1	89765	broad.mit.edu	36	21	42775821	42775821	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080860	exon6	c.G568T	p.D190Y	.	.	.
RSPH1	89765	broad.mit.edu	36	21	42786180	42786180	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080860	exon2	c.G133A	p.E45K	.	.	.
RRP1B	23076	broad.mit.edu	36	21	43918951	43918951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	T	Unknown	Valid	Germline	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015056	exon5	c.C364T	p.R122C	.	.	.
RRP1B	23076	broad.mit.edu	36	21	43931835	43931835	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015056	exon13	c.C1152A	p.V384V	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44635292	44635292	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003307	exon10	c.G1396T	p.D466Y	.	.	.
KRTAP10-4	386672	broad.mit.edu	36	21	44818095	44818095	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198687	exon1	c.G32A	p.S11N	.	.	.
KRTAP10-7	386675	broad.mit.edu	36	21	44845321	44845321	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198689	exon2	c.C357T	p.C119C	.	.	.
KRTAP10-11	386678	broad.mit.edu	36	21	44891295	44891295	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198692	exon1	c.T492G	p.D164E	.	.	.
POFUT2	23275	broad.mit.edu	36	21	45522509	45522509	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133635	exon5	c.C642T	p.S214S	.	.	.
PCBP3	54039	broad.mit.edu	36	21	46145437	46145437	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020528	exon5	c.C321T	p.I107I	.	.	.
PCNT	5116	broad.mit.edu	36	21	46591816	46591816	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006031	exon6	c.T994C	p.L332L	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46781826	46781826	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146114	exon13	c.G1555A	p.A519T	.	.	.
TPTE	7179	broad.mit.edu	36	21	9938248	9938248	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199261	exon20	c.G1269A	p.S423S	.	.	.
TPTE	7179	broad.mit.edu	36	21	9941980	9941980	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199261	exon19	c.T1145G	p.F382C	.	.	.
TPTE	7179	broad.mit.edu	36	21	9956825	9956825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199261	exon15	c.G839A	p.R280Q	.	.	.
CXADR	1525	broad.mit.edu	36	21	17845937	17845937	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31424512	31424512	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C21orf63	59271	broad.mit.edu	36	21	32762031	32762031	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IFNGR2	3460	broad.mit.edu	36	21	33715869	33715869	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SIM2	6493	broad.mit.edu	36	21	37037734	37037734	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40307195	40307195	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MX1	4599	broad.mit.edu	36	21	41729630	41729630	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KRTAP12-2	353323	broad.mit.edu	36	21	44910790	44910790	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TPTE	7179	broad.mit.edu	36	21	9993224	9993224	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IL17RA	23765	broad.mit.edu	36	22	15963029	15963029	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014339	exon7	c.G599A	p.G200D	.	.	.
CECR2	27443	broad.mit.edu	36	22	16400202	16400202	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031413	exon13	c.C1533T	p.F511F	.	.	.
CECR2	27443	broad.mit.edu	36	22	16400356	16400356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031413	exon13	c.C1687T	p.P563S	.	.	.
ATP6V1E1	529	broad.mit.edu	36	22	16475984	16475984	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001696	exon3	c.A202G	p.K68E	.	.	.
PEX26	55670	broad.mit.edu	36	22	16950773	16950773	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017929	exon6	c.G850A	p.A284T	.	.	.
TSSK2	23617	broad.mit.edu	36	22	17499811	17499811	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053006	exon1	c.A899G	p.D300G	.	.	.
CLTCL1	8218	broad.mit.edu	36	22	17643274	17643274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007098	exon2	c.G122A	p.R41Q	.	.	.
DGCR8	54487	broad.mit.edu	36	22	18474184	18474184	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022720	exon11	c.C1959T	p.Y653Y	.	.	.
RIMBP3	85376	broad.mit.edu	36	22	18837098	18837098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015672	exon1	c.C4204T	p.P1402S	.	.	.
SNAP29	9342	broad.mit.edu	36	22	19567844	19567844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004782	exon4	c.C606T	p.I202I	.	.	.
CCDC116	164592	broad.mit.edu	36	22	20318516	20318516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152612	exon3	c.C278T	p.A93V	.	.	.
PPIL2	23759	broad.mit.edu	36	22	20350409	20350409	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014337	exon1	c.A21G	p.Q7Q	.	.	.
MAPK1	5594	broad.mit.edu	36	22	20472617	20472617	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002745	exon6	c.A785C	p.N262T	.	.	.
VPREB1	7441	broad.mit.edu	36	22	20929670	20929670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007128	exon2	c.G359A	p.R120H	.	.	.
ZNF280B	140883	broad.mit.edu	36	22	21172379	21172379	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080764	exon4	c.T1345C	p.C449R	.	.	.
ZNF280A	129025	broad.mit.edu	36	22	21199252	21199252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080740	exon2	c.G703A	p.A235T	.	.	.
RAB36	9609	broad.mit.edu	36	22	21818846	21818846	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004914	exon2	c.G241A	p.D81N	.	.	.
ZNF70	7621	broad.mit.edu	36	22	22416481	22416481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021916	exon2	c.G847A	p.D283N	.	.	.
SMARCB1	6598	broad.mit.edu	36	22	22465823	22465823	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007468	exon3	c.G283A	p.D95N	.	.	.
SLC2A11	66035	broad.mit.edu	36	22	22550010	22550010	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024939	exon6	c.G648A	p.P216P	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22782738	22782738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012295	exon10	c.C1177T	p.R393W	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23573761	23573761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098497	exon4	c.C300T	p.S100S	.	.	.
SGSM1	129049	broad.mit.edu	36	22	23645953	23645953	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098497	exon24	c.C3186A	p.F1062L	.	.	.
CRYBB3	1417	broad.mit.edu	36	22	23929759	23929759	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004076	exon4	c.G224A	p.R75H	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24507741	24507741	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon10	c.A2252C	p.E751A	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24600322	24600322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon23	c.G4021A	p.V1341I	.	.	.
HPS4	89781	broad.mit.edu	36	22	25190267	25190267	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022081	exon11	c.C1329T	p.L443L	.	.	.
SRRD	402055	broad.mit.edu	36	22	25217469	25217469	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013694	exon7	c.C851A	p.S284X	.	.	.
CRYBA4	1413	broad.mit.edu	36	22	25348598	25348598	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001886	exon2	c.A38T	p.K13M	.	.	.
CRYBA4	1413	broad.mit.edu	36	22	25354372	25354372	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001886	exon5	c.T421C	p.S141P	.	.	.
CCDC117	150275	broad.mit.edu	36	22	27509621	27509621	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173510	exon4	c.T590G	p.M197R	.	.	.
XBP1	7494	broad.mit.edu	36	22	27525130	27525130	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005080	exon2	c.A239G	p.N80S	.	.	.
NEFH	4744	broad.mit.edu	36	22	28215175	28215175	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021076	exon4	c.G1546T	p.A516S	.	.	.
NEFH	4744	broad.mit.edu	36	22	28215421	28215421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021076	exon4	c.G1792A	p.A598T	.	.	.
THOC5	8563	broad.mit.edu	36	22	28275123	28275123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002877	exon3	c.C14T	p.S5L	.	.	.
MTMR3	8897	broad.mit.edu	36	22	28717543	28717543	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153051	exon7	c.A344G	p.N115S	.	.	.
MTMR3	8897	broad.mit.edu	36	22	28745931	28745931	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153051	exon17	c.C2283T	p.F761F	.	.	.
SEC14L4	284904	broad.mit.edu	36	22	29220140	29220140	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161368	exon7	c.C577T	p.R193X	.	.	.
TCN2	6948	broad.mit.edu	36	22	29349040	29349040	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184726	exon8	c.C1111A	p.L371I	.	.	.
LIMK2	3985	broad.mit.edu	36	22	29951780	29951780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005569	exon2	c.G91A	p.E31K	.	.	.
PATZ1	23598	broad.mit.edu	36	22	30067575	30067575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032051	exon3	c.C1430T	p.S477L	.	.	.
SFI1	9814	broad.mit.edu	36	22	30257079	30257079	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014775	exon4	c.G302A	p.R101Q	.	.	.
C22orf24	25775	broad.mit.edu	36	22	30660147	30660147	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015372	exon3	c.T440G	p.I147S	.	.	.
C22orf28	51493	broad.mit.edu	36	22	31138069	31138069	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014306	exon1	c.C75A	p.G25G	.	.	.
FBXO7	25793	broad.mit.edu	36	22	31211122	31211122	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033024	exon4	c.A476T	p.Y159F	.	.	.
FBXO7	25793	broad.mit.edu	36	22	31213792	31213792	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033024	exon5	c.C611A	p.S204Y	.	.	.
TIMP3	7078	broad.mit.edu	36	22	31584006	31584006	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000362	exon4	c.C319T	p.R107C	.	.	.
SYN3	8224	broad.mit.edu	36	22	31594971	31594971	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133633	exon4	c.C603A	p.F201L	.	.	.
HMGXB4	10042	broad.mit.edu	36	22	33989200	33989200	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003681	exon3	c.C161A	p.S54Y	.	.	.
HMGXB4	10042	broad.mit.edu	36	22	33991066	33991066	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003681	exon5	c.C685T	p.R229W	.	.	.
HMOX1	3162	broad.mit.edu	36	22	34112719	34112719	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002133	exon3	c.G186T	p.E62D	.	.	.
MCM5	4174	broad.mit.edu	36	22	34142693	34142693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006739	exon12	c.C1476T	p.F492F	.	.	.
APOL5	80831	broad.mit.edu	36	22	34443886	34443886	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030642	exon1	c.A22C	p.N8H	.	.	.
APOL5	80831	broad.mit.edu	36	22	34452432	34452432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030642	exon3	c.C371T	p.A124V	.	.	.
APOL2	23780	broad.mit.edu	36	22	34954053	34954053	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030882	exon5	c.G357C	p.V119V	.	.	.
MYH9	4627	broad.mit.edu	36	22	35010115	35010115	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002473	exon40	c.G5735A	p.R1912H	.	.	.
EIF3D	8664	broad.mit.edu	36	22	35246654	35246654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003753	exon7	c.C493T	p.R165C	.	.	.
NCF4	4689	broad.mit.edu	36	22	35590918	35590918	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013416	exon3	c.C129T	p.I43I	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35649267	35649267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000395	exon3	c.G112A	p.D38N	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35655516	35655516	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000395	exon5	c.T518C	p.V173A	.	.	.
IL2RB	3560	broad.mit.edu	36	22	35865107	35865107	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000878	exon5	c.G384A	p.E128E	.	.	.
IL2RB	3560	broad.mit.edu	36	22	35869557	35869557	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000878	exon3	c.T153C	p.D51D	.	.	.
GGA1	26088	broad.mit.edu	36	22	36346840	36346840	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172687	exon6	c.A502C	p.I168L	.	.	.
TRIOBP	11078	broad.mit.edu	36	22	36450712	36450712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039141	exon7	c.C2203T	p.R735C	.	.	.
EIF3L	51386	broad.mit.edu	36	22	36603638	36603638	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016091	exon11	c.G1089A	p.Q363Q	.	.	.
EIF3L	51386	broad.mit.edu	36	22	36612768	36612768	+	Missense_Mutation	SNP	C	A	A	rs1043783	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016091	exon12	c.C1626A	p.F542L	.	.	.
C22orf23	84645	broad.mit.edu	36	22	36670444	36670444	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032561	exon6	c.G508T	p.E170X	.	.	.
TMEM184B	25829	broad.mit.edu	36	22	36947425	36947425	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195072	exon10	c.C1023T	p.F341F	.	.	.
DDX17	10521	broad.mit.edu	36	22	37211943	37211943	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098504	exon13	c.G2139A	p.G713G	.	.	.
DMC1	11144	broad.mit.edu	36	22	37288309	37288309	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007068	exon5	c.C255A	p.F85L	.	.	.
APOBEC3B	9582	broad.mit.edu	36	22	37712026	37712026	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004900	exon3	c.G438T	p.T146T	.	.	.
RPL3	6122	broad.mit.edu	36	22	38042787	38042787	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033853	exon4	c.A371C	p.K124T	.	.	.
ENTHD1	150350	broad.mit.edu	36	22	38491484	38491484	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152512	exon6	c.C909A	p.I303I	.	.	.
ADSL	158	broad.mit.edu	36	22	39075857	39075857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000026	exon2	c.G229A	p.A77T	.	.	.
DNAJB7	150353	broad.mit.edu	36	22	39587612	39587612	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145174	exon1	c.C333A	p.F111L	.	.	.
XPNPEP3	63929	broad.mit.edu	36	22	39607917	39607917	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022098	exon3	c.T379A	p.F127I	.	.	.
EP300	2033	broad.mit.edu	36	22	39843293	39843293	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001429	exon2	c.T251C	p.L84S	.	.	.
EP300	2033	broad.mit.edu	36	22	39886642	39886642	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001429	exon20	c.C3641A	p.S1214Y	.	.	.
EP300	2033	broad.mit.edu	36	22	39902296	39902296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001429	exon30	c.C4879T	p.R1627W	.	.	.
L3MBTL2	83746	broad.mit.edu	36	22	39950172	39950172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031488	exon9	c.G1145A	p.R382Q	.	.	.
XRCC6	2547	broad.mit.edu	36	22	40372918	40372918	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001469	exon7	c.G846T	p.K282N	.	.	.
SEPT3	55964	broad.mit.edu	36	22	40713588	40713588	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145733	exon5	c.A430G	p.K144E	.	.	.
TCF20	6942	broad.mit.edu	36	22	40936469	40936469	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005650	exon1	c.G4787A	p.R1596Q	.	.	.
TCF20	6942	broad.mit.edu	36	22	40941153	40941153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005650	exon1	c.G103A	p.A35T	.	.	.
ARFGAP3	26286	broad.mit.edu	36	22	41525041	41525041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014570	exon15	c.C1481T	p.S494L	.	.	.
PACSIN2	11252	broad.mit.edu	36	22	41614638	41614638	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184971	exon5	c.G564T	p.K188N	.	.	.
TTLL1	25809	broad.mit.edu	36	22	41772368	41772368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012263	exon10	c.C1134T	p.Y378Y	.	.	.
SAMM50	25813	broad.mit.edu	36	22	42699509	42699509	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015380	exon5	c.T383C	p.L128S	.	.	.
PARVG	64098	broad.mit.edu	36	22	42925871	42925871	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137606	exon12	c.A749G	p.Q250R	.	.	.
PRR5-ARHGAP8	553158	broad.mit.edu	36	22	43636937	43636937	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181334	exon15	c.A1466C	p.N489T	.	.	.
SMC1B	27127	broad.mit.edu	36	22	44158053	44158053	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148674	exon12	c.G2016T	p.K672N	.	.	.
SMC1B	27127	broad.mit.edu	36	22	44173678	44173678	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148674	exon6	c.T1074G	p.I358M	.	.	.
RIBC2	26150	broad.mit.edu	36	22	44196935	44196935	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015653	exon4	c.G642T	p.K214N	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45032690	45032690	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006071	exon1	c.C5194T	p.R1732C	.	.	.
PKDREJ	10343	broad.mit.edu	36	22	45033482	45033482	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006071	exon1	c.C4402T	p.P1468S	.	.	.
TTC38	55020	broad.mit.edu	36	22	45053196	45053196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017931	exon6	c.G589A	p.D197N	.	.	.
TRMU	55687	broad.mit.edu	36	22	45126838	45126838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018006	exon7	c.G719A	p.R240Q	.	.	.
HIRA	7290	broad.mit.edu	36	22	17728752	17728752	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UFD1L	7353	broad.mit.edu	36	22	17818185	17818185	+	3'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UBE2L3	7332	broad.mit.edu	36	22	20305794	20305794	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MAPK1	5594	broad.mit.edu	36	22	20453487	20453487	+	3'UTR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	22	21054350	21054350	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	22	21060763	21060763	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	22	21341091	21341091	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	22	21420307	21420307	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UPB1	51733	broad.mit.edu	36	22	23228307	23228307	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25077011	25077011	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OSM	5008	broad.mit.edu	36	22	28991134	28991134	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30176353	30176353	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	22	30765873	30765873	+	IGR	SNP	G	A	A	rs14938	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TMPRSS6	164656	broad.mit.edu	36	22	35829195	35829195	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	22	36751866	36751866	+	IGR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DMC1	11144	broad.mit.edu	36	22	37294156	37294156	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ENTHD1	150350	broad.mit.edu	36	22	38561784	38561784	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SEPT3	55964	broad.mit.edu	36	22	40707787	40707787	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TCF20	6942	broad.mit.edu	36	22	40941257	40941257	+	5'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PACSIN2	11252	broad.mit.edu	36	22	41608255	41608255	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GTSE1	51512	broad.mit.edu	36	22	45086695	45086695	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SSB	6741	broad.mit.edu	36	2	170375795	170375796	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003142	exon10	c.992_993insA	p.S331fs	.	.	.
ADAM23	8745	broad.mit.edu	36	2	207018300	207018300	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003812	exon2	c.239delA	p.E80fs	.	.	.
LONRF2	164832	broad.mit.edu	36	2	100269914	100269914	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198461	exon11	c.C1964A	p.S655Y	.	.	.
NMS	129521	broad.mit.edu	36	2	100455692	100455692	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011717	exon2	c.T80G	p.F27C	.	.	.
NPAS2	4862	broad.mit.edu	36	2	100947031	100947031	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002518	exon8	c.C678A	p.F226L	.	.	.
RPL31	6160	broad.mit.edu	36	2	100988973	100988973	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099693	exon4	c.C354A	p.F118L	.	.	.
C2orf29	55571	broad.mit.edu	36	2	101240774	101240774	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017546	exon2	c.C604T	p.R202C	.	.	.
IL1R2	7850	broad.mit.edu	36	2	102002566	102002566	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004633	exon5	c.T548G	p.F183C	.	.	.
IL1RL2	8808	broad.mit.edu	36	2	102222105	102222105	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003854	exon12	c.G1700T	p.R567I	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102373009	102373009	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003855	exon8	c.C1011A	p.I337I	.	.	.
IL18R1	8809	broad.mit.edu	36	2	102377510	102377510	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003855	exon9	c.C1261T	p.P421S	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102515390	102515390	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011552	exon12	c.C2208A	p.Y736X	.	.	.
MFSD9	84804	broad.mit.edu	36	2	102701512	102701512	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032718	exon6	c.C1224T	p.S408S	.	.	.
TGFBRAP1	9392	broad.mit.edu	36	2	105250285	105250285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004257	exon12	c.G2570A	p.G857D	.	.	.
C2orf49	79074	broad.mit.edu	36	2	105328255	105328255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024093	exon4	c.C694A	p.P232T	.	.	.
FHL2	2274	broad.mit.edu	36	2	105346249	105346249	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039492	exon6	c.G613T	p.D205Y	.	.	.
ST6GAL2	84620	broad.mit.edu	36	2	106826416	106826416	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142352	exon2	c.C450A	p.F150L	.	.	.
SLC5A7	60482	broad.mit.edu	36	2	107993257	107993257	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021815	exon9	c.C1251A	p.I417I	.	.	.
GCC2	9648	broad.mit.edu	36	2	108453808	108453808	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181453	exon6	c.G1591T	p.D531Y	.	.	.
GCC2	9648	broad.mit.edu	36	2	108454436	108454436	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181453	exon6	c.A2219T	p.N740I	.	.	.
SH3RF3	344558	broad.mit.edu	36	2	109330751	109330751	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099289	exon2	c.C763T	p.P255S	.	.	.
MALL	7851	broad.mit.edu	36	2	110202448	110202448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005434	exon3	c.C389T	p.S130L	.	.	.
NPHP1	4867	broad.mit.edu	36	2	110284724	110284724	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128178	exon5	c.A470G	p.Y157C	.	.	.
BUB1	699	broad.mit.edu	36	2	111131128	111131128	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004336	exon15	c.C1656A	p.T552T	.	.	.
BUB1	699	broad.mit.edu	36	2	111135717	111135717	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004336	exon10	c.A1132G	p.T378A	.	.	.
BCL2L11	10018	broad.mit.edu	36	2	111598065	111598065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138621	exon2	c.G272A	p.R91Q	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112308690	112308690	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022662	exon19	c.A2346C	p.G782G	.	.	.
TMEM87B	84910	broad.mit.edu	36	2	112572667	112572667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032824	exon14	c.G1297A	p.D433N	.	.	.
ZC3H6	376940	broad.mit.edu	36	2	112796760	112796760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198581	exon9	c.C1150T	p.R384C	.	.	.
SLC20A1	6574	broad.mit.edu	36	2	113133612	113133612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005415	exon8	c.C1409T	p.A470V	.	.	.
ACTR3	10096	broad.mit.edu	36	2	114416389	114416389	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005721	exon8	c.A841C	p.I281L	.	.	.
DPP10	57628	broad.mit.edu	36	2	115973647	115973647	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020868	exon4	c.T363G	p.T121T	.	.	.
GREB1	9687	broad.mit.edu	36	2	11614229	11614229	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148903	exon2	c.G38A	p.R13H	.	.	.
DPP10	57628	broad.mit.edu	36	2	116265149	116265149	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020868	exon18	c.T1554A	p.N518K	.	.	.
DPP10	57628	broad.mit.edu	36	2	116289747	116289747	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020868	exon21	c.A1922G	p.D641G	.	.	.
DPP10	57628	broad.mit.edu	36	2	116314837	116314837	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020868	exon25	c.C2224A	p.L742I	.	.	.
GREB1	9687	broad.mit.edu	36	2	11633982	11633982	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148903	exon5	c.G507A	p.T169T	.	.	.
GREB1	9687	broad.mit.edu	36	2	11678559	11678559	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014668	exon23	c.C4122A	p.V1374V	.	.	.
GREB1	9687	broad.mit.edu	36	2	11690516	11690516	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014668	exon28	c.G4867A	p.E1623K	.	.	.
CCDC93	54520	broad.mit.edu	36	2	118423387	118423387	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019044	exon14	c.G1123T	p.E375X	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11862027	11862027	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon15	c.A1933G	p.N645D	.	.	.
EN1	2019	broad.mit.edu	36	2	119317099	119317099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001426	exon2	c.G1064A	p.R355H	.	.	.
MARCO	8685	broad.mit.edu	36	2	119456442	119456442	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006770	exon12	c.G1049A	p.S350N	.	.	.
SCTR	6344	broad.mit.edu	36	2	119938193	119938193	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002980	exon6	c.T612G	p.D204E	.	.	.
PCDP1	200373	broad.mit.edu	36	2	120121007	120121007	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029996	exon23	c.C1371T	p.C457C	.	.	.
PCDP1	200373	broad.mit.edu	36	2	120126100	120126100	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029996	exon24	c.A1541G	p.D514G	.	.	.
TMEM177	80775	broad.mit.edu	36	2	120155236	120155236	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105199	exon2	c.G337T	p.D113Y	.	.	.
RALB	5899	broad.mit.edu	36	2	120760105	120760105	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002881	exon3	c.C300A	p.S100S	.	.	.
INHBB	3625	broad.mit.edu	36	2	120823824	120823824	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002193	exon2	c.G1128A	p.K376K	.	.	.
TFCP2L1	29842	broad.mit.edu	36	2	121711673	121711673	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014553	exon10	c.C999T	p.F333F	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121822621	121822621	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142274	exon36	c.C4149T	p.V1383V	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125083852	125083852	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon12	c.C1758A	p.I586I	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125263991	125263991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon18	c.G2792A	p.R931H	.	.	.
CYP27C1	339761	broad.mit.edu	36	2	127667887	127667887	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001665	exon6	c.G746A	p.G249D	.	.	.
ERCC3	2071	broad.mit.edu	36	2	127761013	127761013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000122	exon8	c.C1078T	p.R360C	.	.	.
IWS1	55677	broad.mit.edu	36	2	127967443	127967443	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017969	exon9	c.G1813T	p.E605X	.	.	.
UGGT1	56886	broad.mit.edu	36	2	128652554	128652554	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020120	exon34	c.A3756C	p.K1252N	.	.	.
RAB6C	84084	broad.mit.edu	36	2	130454518	130454518	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032144	exon1	c.C360A	p.I120I	.	.	.
CCDC115	84317	broad.mit.edu	36	2	130816065	130816065	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032357	exon1	c.T104C	p.V35A	.	.	.
GPR148	344561	broad.mit.edu	36	2	131203512	131203512	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207364	exon1	c.C318A	p.I106I	.	.	.
POTEE	445582	broad.mit.edu	36	2	131737974	131737974	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083538	exon15	c.A2476C	p.T826P	.	.	.
GPR39	2863	broad.mit.edu	36	2	132891212	132891212	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001508	exon1	c.A127G	p.M43V	.	.	.
GPR39	2863	broad.mit.edu	36	2	132891433	132891433	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001508	exon1	c.G348T	p.E116D	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133257279	133257279	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.A3575G	p.D1192G	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133259241	133259241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.C1613T	p.T538I	.	.	.
ACMSD	130013	broad.mit.edu	36	2	135346581	135346581	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138326	exon8	c.A749G	p.D250G	.	.	.
CCNT2	905	broad.mit.edu	36	2	135428084	135428084	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058241	exon9	c.C1589A	p.S530Y	.	.	.
YSK4	80122	broad.mit.edu	36	2	135472964	135472964	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025052	exon5	c.G388A	p.E130K	.	.	.
UBXN4	23190	broad.mit.edu	36	2	136246578	136246578	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014607	exon9	c.G941T	p.R314I	.	.	.
LCT	3938	broad.mit.edu	36	2	136262512	136262512	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon17	c.A5636C	p.E1879A	.	.	.
LCT	3938	broad.mit.edu	36	2	136283192	136283192	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002299	exon8	c.G3195T	p.E1065D	.	.	.
HNMT	3176	broad.mit.edu	36	2	138479213	138479213	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006895	exon5	c.C471A	p.F157L	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140707239	140707239	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon91	c.G13786T	p.E4596X	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140832977	140832977	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018557	exon73	c.C11140A	p.L3714I	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140844762	140844762	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon71	c.G10995T	p.E3665D	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140931609	140931609	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon61	c.C9707A	p.S3236X	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140949246	140949246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon60	c.C9556T	p.R3186C	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140969655	140969655	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon56	c.G8983A	p.D2995N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141377017	141377017	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon23	c.G3708A	p.K1236K	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141456207	141456207	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018557	exon18	c.C2879T	p.A960V	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141489776	141489776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon13	c.G2149A	p.D717N	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141721346	141721346	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon5	c.A511C	p.N171H	.	.	.
TPO	7173	broad.mit.edu	36	2	1419034	1419034	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175721	exon4	c.C353T	p.A118V	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141954449	141954449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon3	c.G329A	p.G110E	.	.	.
KYNU	8942	broad.mit.edu	36	2	143359422	143359422	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003937	exon2	c.C16A	p.L6I	.	.	.
KYNU	8942	broad.mit.edu	36	2	143459220	143459220	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003937	exon9	c.A827C	p.K276T	.	.	.
KYNU	8942	broad.mit.edu	36	2	143462896	143462896	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001032998	exon11	c.C915A	p.F305L	.	.	.
KYNU	8942	broad.mit.edu	36	2	143514497	143514497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003937	exon13	c.C1072T	p.R358W	.	.	.
TPO	7173	broad.mit.edu	36	2	1436569	1436569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175721	exon5	c.C579T	p.P193P	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144872633	144872633	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014795	exon8	c.T2591G	p.F864C	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144875255	144875255	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014795	exon7	c.A897C	p.E299D	.	.	.
ZEB2	9839	broad.mit.edu	36	2	144878922	144878922	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014795	exon5	c.G543T	p.E181D	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148391336	148391336	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon6	c.G687A	p.W229X	.	.	.
ORC4	5000	broad.mit.edu	36	2	148409619	148409619	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181741	exon14	c.C1241A	p.A414D	.	.	.
MBD5	55777	broad.mit.edu	36	2	148936715	148936715	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018328	exon7	c.C208A	p.L70I	.	.	.
MBD5	55777	broad.mit.edu	36	2	148943677	148943677	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018328	exon9	c.C1695A	p.I565I	.	.	.
MBD5	55777	broad.mit.edu	36	2	148964398	148964398	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018328	exon12	c.A4028G	p.K1343R	.	.	.
MBD5	55777	broad.mit.edu	36	2	148964553	148964553	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018328	exon12	c.G4183T	p.G1395X	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149502100	149502100	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004522	exon3	c.C276A	p.I92I	.	.	.
KIF5C	3800	broad.mit.edu	36	2	149565224	149565224	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004522	exon19	c.C2180A	p.S727Y	.	.	.
RND3	390	broad.mit.edu	36	2	151039741	151039741	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005168	exon4	c.C242A	p.S81Y	.	.	.
RBM43	375287	broad.mit.edu	36	2	151816405	151816405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198557	exon4	c.C335T	p.A112V	.	.	.
RIF1	55183	broad.mit.edu	36	2	152038733	152038733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177665	exon33	c.C7027T	p.R2343C	.	.	.
NEB	4703	broad.mit.edu	36	2	152058921	152058921	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon174	c.G24579T	p.S8193S	.	.	.
NEB	4703	broad.mit.edu	36	2	152083128	152083128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon156	c.G22750A	p.D7584N	.	.	.
NEB	4703	broad.mit.edu	36	2	152084513	152084513	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon154	c.A22495C	p.N7499H	.	.	.
NEB	4703	broad.mit.edu	36	2	152098989	152098989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon143	c.G21403A	p.D7135N	.	.	.
NEB	4703	broad.mit.edu	36	2	152134902	152134902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon109	c.C17369T	p.T5790I	.	.	.
NEB	4703	broad.mit.edu	36	2	152215025	152215025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon54	c.C7342T	p.R2448C	.	.	.
NEB	4703	broad.mit.edu	36	2	152215100	152215100	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon54	c.G7267T	p.G2423X	.	.	.
NEB	4703	broad.mit.edu	36	2	152221172	152221172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon49	c.G6236A	p.R2079H	.	.	.
NEB	4703	broad.mit.edu	36	2	152231110	152231110	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon41	c.C4771A	p.L1591I	.	.	.
NEB	4703	broad.mit.edu	36	2	152237312	152237312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon37	c.G4116T	p.K1372N	.	.	.
NEB	4703	broad.mit.edu	36	2	152252455	152252455	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon26	c.G2454T	p.K818N	.	.	.
NEB	4703	broad.mit.edu	36	2	152259130	152259130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon20	c.G1849A	p.D617N	.	.	.
STAM2	10254	broad.mit.edu	36	2	152712037	152712037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005843	exon5	c.C332A	p.S111Y	.	.	.
NBAS	51594	broad.mit.edu	36	2	15459768	15459768	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015909	exon26	c.G3046T	p.E1016X	.	.	.
NBAS	51594	broad.mit.edu	36	2	15475125	15475125	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015909	exon24	c.A2740C	p.K914Q	.	.	.
GALNT13	114805	broad.mit.edu	36	2	154810701	154810701	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052917	exon7	c.G817T	p.E273X	.	.	.
GALNT13	114805	broad.mit.edu	36	2	154960866	154960866	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052917	exon10	c.G1274T	p.R425I	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155274570	155274570	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002239	exon2	c.A912T	p.E304D	.	.	.
NBAS	51594	broad.mit.edu	36	2	15533346	15533346	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015909	exon14	c.G1257T	p.K419N	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155419661	155419661	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002239	exon3	c.C1096A	p.L366I	.	.	.
KCNJ3	3760	broad.mit.edu	36	2	155419801	155419801	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002239	exon3	c.T1236C	p.F412F	.	.	.
GPD2	2820	broad.mit.edu	36	2	157040893	157040893	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083112	exon2	c.G30A	p.T10T	.	.	.
CCDC148	130940	broad.mit.edu	36	2	158741328	158741328	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138803	exon13	c.T1580G	p.F527C	.	.	.
PKP4	8502	broad.mit.edu	36	2	159142130	159142130	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003628	exon3	c.C234T	p.I78I	.	.	.
PKP4	8502	broad.mit.edu	36	2	159222910	159222910	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003628	exon12	c.C1931A	p.S644X	.	.	.
WDSUB1	151525	broad.mit.edu	36	2	159821126	159821126	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152528	exon9	c.G959A	p.R320H	.	.	.
WDSUB1	151525	broad.mit.edu	36	2	159844691	159844691	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152528	exon3	c.T410C	p.V137A	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	160043461	160043461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013450	exon3	c.C16T	p.R6W	.	.	.
LY75	4065	broad.mit.edu	36	2	160342709	160342709	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon37	c.G5237T	p.R1746M	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160514446	160514446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007267	exon25	c.G3628A	p.V1210I	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160548723	160548723	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007267	exon13	c.G2145T	p.E715D	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160552075	160552075	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007267	exon12	c.A1875C	p.P625P	.	.	.
ITGB6	3694	broad.mit.edu	36	2	160688599	160688599	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000888	exon12	c.G1930T	p.E644X	.	.	.
ITGB6	3694	broad.mit.edu	36	2	160738825	160738825	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000888	exon5	c.G665T	p.R222I	.	.	.
ITGB6	3694	broad.mit.edu	36	2	160760292	160760292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000888	exon4	c.G427A	p.A143T	.	.	.
RBMS1	5937	broad.mit.edu	36	2	160851833	160851833	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016836	exon7	c.G649T	p.E217X	.	.	.
TBR1	10716	broad.mit.edu	36	2	161981550	161981550	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006593	exon1	c.G383A	p.G128D	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162469581	162469581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178016	exon14	c.C1610T	p.S537F	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162523293	162523293	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178016	exon21	c.A2787G	p.S929S	.	.	.
PXDN	7837	broad.mit.edu	36	2	1627507	1627507	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon18	c.C3633T	p.I1211I	.	.	.
IFIH1	64135	broad.mit.edu	36	2	162842363	162842363	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022168	exon10	c.C1852T	p.R618X	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163000153	163000153	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon7	c.C1734T	p.I578I	.	.	.
FIGN	55137	broad.mit.edu	36	2	164175171	164175171	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018086	exon3	c.A1417C	p.T473P	.	.	.
FIGN	55137	broad.mit.edu	36	2	164176110	164176110	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018086	exon3	c.G478T	p.E160X	.	.	.
PXDN	7837	broad.mit.edu	36	2	1646430	1646430	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012293	exon12	c.C1521A	p.I507I	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165269768	165269768	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014900	exon7	c.G1090A	p.A364T	.	.	.
SLC38A11	151258	broad.mit.edu	36	2	165463342	165463342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173512	exon10	c.G1006A	p.V336I	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165705568	165705568	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon13	c.C1858T	p.R620X	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165875140	165875140	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon6	c.C759A	p.I253I	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165891637	165891637	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon12	c.G2046T	p.K682N	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165909563	165909563	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon15	c.C2815T	p.L939L	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165951546	165951546	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon25	c.C4596A	p.V1532V	.	.	.
GALNT3	2591	broad.mit.edu	36	2	166313537	166313537	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004482	exon11	c.A1902C	p.X634Y	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166439527	166439527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024753	exon29	c.C3935T	p.A1312V	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166455672	166455672	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024753	exon23	c.T3023C	p.F1008S	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166510330	166510330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024753	exon4	c.G379A	p.A127T	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166601104	166601104	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006920	exon16	c.G3096T	p.K1032N	.	.	.
SCN1A	6323	broad.mit.edu	36	2	166638157	166638157	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006920	exon1	c.C221A	p.S74X	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166798151	166798151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon21	c.G3836A	p.R1279Q	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166851152	166851152	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon11	c.C1542T	p.F514F	.	.	.
SCN7A	6332	broad.mit.edu	36	2	166997322	166997322	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon15	c.A2344C	p.N782H	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167042328	167042328	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon2	c.C125A	p.P42H	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167468405	167468405	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199143	exon2	c.C167A	p.S56Y	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167807390	167807390	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C576T	p.C192C	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167808391	167808391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C1577T	p.S526L	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814048	167814048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C7234T	p.P2412S	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167814722	167814722	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C7908T	p.I2636I	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167816443	167816443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C9629T	p.S3210L	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823038	167823038	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199143	exon11	c.C1835A	p.S612Y	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167823609	167823609	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199143	exon11	c.G2406T	p.K802N	.	.	.
LASS6	253782	broad.mit.edu	36	2	169282635	169282635	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203463	exon8	c.A746T	p.K249I	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169495553	169495553	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon25	c.G3279A	p.S1093S	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169522787	169522787	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon19	c.C2276A	p.S759Y	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169534967	169534967	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon15	c.T1643G	p.F548C	.	.	.
ABCB11	8647	broad.mit.edu	36	2	169550892	169550892	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003742	exon10	c.G1057T	p.E353X	.	.	.
LRP2	4036	broad.mit.edu	36	2	169711631	169711631	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon69	c.C12675T	p.F4225F	.	.	.
LRP2	4036	broad.mit.edu	36	2	169752851	169752851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon49	c.G9203A	p.C3068Y	.	.	.
LRP2	4036	broad.mit.edu	36	2	169756698	169756698	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon48	c.C8922T	p.G2974G	.	.	.
LRP2	4036	broad.mit.edu	36	2	169768959	169768959	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon42	c.C7784A	p.A2595D	.	.	.
LRP2	4036	broad.mit.edu	36	2	169802874	169802874	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004525	exon27	c.G4479A	p.A1493A	.	.	.
LRP2	4036	broad.mit.edu	36	2	169805767	169805767	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004525	exon25	c.G4022T	p.G1341V	.	.	.
LRP2	4036	broad.mit.edu	36	2	169811596	169811596	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon21	c.A3055C	p.N1019H	.	.	.
LRP2	4036	broad.mit.edu	36	2	169837792	169837792	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon15	c.C2007T	p.G669G	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170095399	170095399	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon14	c.G2386A	p.G796R	.	.	.
PPIG	9360	broad.mit.edu	36	2	170195698	170195698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004792	exon10	c.G716A	p.R239Q	.	.	.
PPIG	9360	broad.mit.edu	36	2	170201594	170201594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004792	exon14	c.G1580A	p.S527N	.	.	.
C2orf77	129881	broad.mit.edu	36	2	170218902	170218902	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085447	exon6	c.G888T	p.K296N	.	.	.
C2orf77	129881	broad.mit.edu	36	2	170245878	170245878	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085447	exon2	c.A179C	p.D60A	.	.	.
KLHL23	151230	broad.mit.edu	36	2	170300290	170300290	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199290	exon4	c.G520T	p.E174X	.	.	.
METTL5	29081	broad.mit.edu	36	2	170385999	170385999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014168	exon3	c.C255T	p.D85D	.	.	.
UBR3	130507	broad.mit.edu	36	2	170551411	170551411	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172070	exon25	c.G3645T	p.E1215D	.	.	.
UBR3	130507	broad.mit.edu	36	2	170559198	170559198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172070	exon26	c.C3904T	p.R1302C	.	.	.
UBR3	130507	broad.mit.edu	36	2	170620295	170620295	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172070	exon33	c.C4740T	p.S1580S	.	.	.
UBR3	130507	broad.mit.edu	36	2	170644724	170644724	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172070	exon37	c.T5354G	p.F1785C	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170779221	170779221	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171642	exon4	c.C408A	p.I136I	.	.	.
MYO3B	140469	broad.mit.edu	36	2	170967736	170967736	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171642	exon19	c.T2262G	p.V754V	.	.	.
TLK1	9874	broad.mit.edu	36	2	171618566	171618566	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136555	exon6	c.A395C	p.K132T	.	.	.
DCAF17	80067	broad.mit.edu	36	2	172013570	172013570	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025000	exon4	c.T455G	p.F152C	.	.	.
SLC25A12	8604	broad.mit.edu	36	2	172457974	172457974	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003705	exon2	c.A53C	p.N18T	.	.	.
ITGA6	3655	broad.mit.edu	36	2	173064063	173064063	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000210	exon21	c.T2745G	p.F915L	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173590432	173590432	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007023	exon21	c.C1962T	p.G654G	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173600061	173600061	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007023	exon25	c.C2386T	p.L796L	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173621575	173621575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007023	exon30	c.G2855A	p.R952H	.	.	.
RAPGEF4	11069	broad.mit.edu	36	2	173624671	173624671	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007023	exon31	c.A2966T	p.Q989L	.	.	.
ZAK	51776	broad.mit.edu	36	2	173742807	173742807	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133646	exon3	c.G188A	p.R63K	.	.	.
ZAK	51776	broad.mit.edu	36	2	173776811	173776811	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133646	exon9	c.A711C	p.E237D	.	.	.
CDCA7	83879	broad.mit.edu	36	2	173939296	173939296	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031942	exon8	c.A1075G	p.T359A	.	.	.
CIR1	9541	broad.mit.edu	36	2	174921599	174921599	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004882	exon10	c.C1225T	p.R409X	.	.	.
WIPF1	7456	broad.mit.edu	36	2	175140119	175140119	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003387	exon7	c.G1381A	p.D461N	.	.	.
RAD51AP2	729475	broad.mit.edu	36	2	17561813	17561813	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099218	exon1	c.G1351T	p.V451F	.	.	.
ATP5G3	518	broad.mit.edu	36	2	175752124	175752124	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001689	exon4	c.A221C	p.K74T	.	.	.
KIAA1715	80856	broad.mit.edu	36	2	176543742	176543742	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030650	exon6	c.A353C	p.K118T	.	.	.
EVX2	344191	broad.mit.edu	36	2	176656697	176656697	+	Silent	SNP	G	A	A	rs35200230	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080458	exon1	c.C54T	p.S18S	.	.	.
HOXD8	3234	broad.mit.edu	36	2	176703748	176703748	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019558	exon1	c.T408G	p.F136L	.	.	.
HOXD8	3234	broad.mit.edu	36	2	176704495	176704495	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019558	exon2	c.T782G	p.F261C	.	.	.
SMC6	79677	broad.mit.edu	36	2	17762849	17762849	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142286	exon12	c.G1068A	p.K356K	.	.	.
HNRNPA3	220988	broad.mit.edu	36	2	177788868	177788868	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194247	exon3	c.G340T	p.E114X	.	.	.
HNRNPA3	220988	broad.mit.edu	36	2	177789511	177789511	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194247	exon5	c.T588C	p.C196C	.	.	.
AGPS	8540	broad.mit.edu	36	2	178034986	178034986	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003659	exon9	c.G990T	p.E330D	.	.	.
GEN1	348654	broad.mit.edu	36	2	17818026	17818026	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130009	exon10	c.A1050G	p.R350R	.	.	.
TTC30A	92104	broad.mit.edu	36	2	178191042	178191042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152275	exon1	c.G634A	p.A212T	.	.	.
GEN1	348654	broad.mit.edu	36	2	17825486	17825486	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130009	exon14	c.C1526T	p.S509L	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178644592	178644592	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016953	exon1	c.G819T	p.E273D	.	.	.
PDE11A	50940	broad.mit.edu	36	2	178644846	178644846	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016953	exon1	c.G565A	p.A189T	.	.	.
RBM45	129831	broad.mit.edu	36	2	178694242	178694242	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152945	exon5	c.C763A	p.P255T	.	.	.
OSBPL6	114880	broad.mit.edu	36	2	178968485	178968485	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145739	exon24	c.C2770T	p.R924X	.	.	.
PRKRA	8575	broad.mit.edu	36	2	179005091	179005091	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139517	exon7	c.G888T	p.K296N	.	.	.
DFNB59	494513	broad.mit.edu	36	2	179029075	179029075	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042702	exon4	c.G500A	p.R167Q	.	.	.
PLEKHA3	65977	broad.mit.edu	36	2	179053867	179053867	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019091	exon1	c.A25G	p.T9A	.	.	.
TTN	7273	broad.mit.edu	36	2	179101566	179101566	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon188	c.C79962A	p.F26654L	.	.	.
TTN	7273	broad.mit.edu	36	2	179108480	179108480	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003319	exon186	c.G73912A	p.E24638K	.	.	.
TTN	7273	broad.mit.edu	36	2	179108567	179108567	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon186	c.G73825T	p.D24609Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179113343	179113343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon179	c.C70600T	p.L23534F	.	.	.
TTN	7273	broad.mit.edu	36	2	179118900	179118900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon171	c.C68113T	p.P22705S	.	.	.
TTN	7273	broad.mit.edu	36	2	179125880	179125880	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon163	c.C62797T	p.R20933W	.	.	.
TTN	7273	broad.mit.edu	36	2	179126275	179126275	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon163	c.A62402G	p.D20801G	.	.	.
TTN	7273	broad.mit.edu	36	2	179126484	179126484	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon162	c.G62298T	p.K20766N	.	.	.
TTN	7273	broad.mit.edu	36	2	179130100	179130100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon158	c.C60831T	p.F20277F	.	.	.
TTN	7273	broad.mit.edu	36	2	179133310	179133310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C58599T	p.C19533C	.	.	.
TTN	7273	broad.mit.edu	36	2	179133547	179133547	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.G58362T	p.M19454I	.	.	.
TTN	7273	broad.mit.edu	36	2	179135853	179135853	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.A56056C	p.I18686L	.	.	.
TTN	7273	broad.mit.edu	36	2	179136001	179136001	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C55908T	p.V18636V	.	.	.
TTN	7273	broad.mit.edu	36	2	179137426	179137426	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.G54483T	p.X18161Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179138519	179138519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C53390T	p.A17797V	.	.	.
TTN	7273	broad.mit.edu	36	2	179143018	179143018	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C48891T	p.C16297C	.	.	.
TTN	7273	broad.mit.edu	36	2	179144050	179144050	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.A47859G	p.S15953S	.	.	.
TTN	7273	broad.mit.edu	36	2	179144697	179144697	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.T47212G	p.L15738V	.	.	.
TTN	7273	broad.mit.edu	36	2	179161634	179161634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon132	c.C35868T	p.D11956D	.	.	.
TTN	7273	broad.mit.edu	36	2	179165964	179165964	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon128	c.A31932G	p.G10644G	.	.	.
TTN	7273	broad.mit.edu	36	2	179174728	179174728	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon114	c.T28139G	p.I9380S	.	.	.
TTN	7273	broad.mit.edu	36	2	179185341	179185341	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon94	c.C22961A	p.S7654Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179194267	179194267	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon74	c.C18228T	p.C6076C	.	.	.
TTN	7273	broad.mit.edu	36	2	179250731	179250731	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon143	c.C30421T	p.L10141L	.	.	.
TTN	7273	broad.mit.edu	36	2	179286990	179286990	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon89	c.C22908A	p.F7636L	.	.	.
TTN	7273	broad.mit.edu	36	2	179291093	179291093	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon83	c.T21153G	p.I7051M	.	.	.
TTN	7273	broad.mit.edu	36	2	179292158	179292158	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon80	c.C20472T	p.C6824C	.	.	.
TTN	7273	broad.mit.edu	36	2	179293386	179293386	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon77	c.A19616G	p.D6539G	.	.	.
TTN	7273	broad.mit.edu	36	2	179294006	179294006	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133378	exon76	c.C19253A	p.S6418Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179294144	179294144	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon76	c.C19115T	p.A6372V	.	.	.
TTN	7273	broad.mit.edu	36	2	179297388	179297388	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon69	c.C17227A	p.L5743M	.	.	.
TTN	7273	broad.mit.edu	36	2	179298833	179298833	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon67	c.C16729A	p.L5577I	.	.	.
TTN	7273	broad.mit.edu	36	2	179303607	179303607	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon58	c.A14166C	p.K4722N	.	.	.
TTN	7273	broad.mit.edu	36	2	179303963	179303963	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon57	c.G13942T	p.E4648X	.	.	.
TTN	7273	broad.mit.edu	36	2	179307716	179307716	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon48	c.C11448T	p.V3816V	.	.	.
TTN	7273	broad.mit.edu	36	2	179321740	179321740	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.C13632T	p.D4544D	.	.	.
TTN	7273	broad.mit.edu	36	2	179323517	179323517	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.C11855A	p.S3952Y	.	.	.
TTN	7273	broad.mit.edu	36	2	179329470	179329470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133437	exon44	c.C10465T	p.P3489S	.	.	.
TTN	7273	broad.mit.edu	36	2	179352034	179352034	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon23	c.C3882A	p.D1294E	.	.	.
TTN	7273	broad.mit.edu	36	2	179355345	179355345	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon19	c.A3081T	p.Q1027H	.	.	.
TTN	7273	broad.mit.edu	36	2	179368161	179368161	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon7	c.C978A	p.L326L	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179445197	179445197	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173648	exon13	c.C1987A	p.L663I	.	.	.
KCNS3	3790	broad.mit.edu	36	2	17977146	17977146	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002252	exon3	c.G1390A	p.D464N	.	.	.
CWC22	57703	broad.mit.edu	36	2	180518194	180518194	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020943	exon20	c.A2634G	p.R878R	.	.	.
CWC22	57703	broad.mit.edu	36	2	180546619	180546619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020943	exon7	c.G737A	p.R246Q	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182095258	182095258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000885	exon18	c.C2018T	p.T673M	.	.	.
ITGA4	3676	broad.mit.edu	36	2	182104664	182104664	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000885	exon25	c.C2700A	p.F900L	.	.	.
MYT1L	23040	broad.mit.edu	36	2	1822081	1822081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015025	exon21	c.C2921T	p.S974F	.	.	.
SSFA2	6744	broad.mit.edu	36	2	182489006	182489006	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006751	exon11	c.G2394A	p.S798S	.	.	.
PPP1R1C	151242	broad.mit.edu	36	2	182690229	182690229	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080545	exon5	c.G292T	p.E98X	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183508340	183508340	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_205842	exon26	c.A2722G	p.S908G	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183559192	183559192	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205842	exon11	c.A974C	p.K325T	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185509812	185509812	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194250	exon4	c.G1444T	p.D482Y	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18600345	18600345	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199103	exon9	c.T1546G	p.F516V	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18621603	18621603	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199086	exon8	c.A1190G	p.D397G	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186379381	186379381	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173651	exon17	c.G17370A	p.S5790S	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186380291	186380291	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173651	exon17	c.A18280G	p.T6094A	.	.	.
FSIP2	401024	broad.mit.edu	36	2	186381165	186381165	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173651	exon17	c.C19154T	p.S6385F	.	.	.
ZC3H15	55854	broad.mit.edu	36	2	187068284	187068284	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018471	exon2	c.T155G	p.F52C	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189618199	189618199	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon47	c.C3314A	p.S1105Y	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189636963	189636963	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon26	c.A1758C	p.K586N	.	.	.
COL5A2	1290	broad.mit.edu	36	2	189652040	189652040	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000393	exon15	c.T999C	p.G333G	.	.	.
SLC40A1	30061	broad.mit.edu	36	2	190136987	190136987	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014585	exon7	c.T970G	p.F324V	.	.	.
PMS1	5378	broad.mit.edu	36	2	190417043	190417043	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000534	exon6	c.G691T	p.E231X	.	.	.
MSTN	2660	broad.mit.edu	36	2	190633110	190633110	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005259	exon2	c.G670T	p.G224C	.	.	.
C2orf88	84281	broad.mit.edu	36	2	190772852	190772852	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042519	exon2	c.G21T	p.K7N	.	.	.
INPP1	3628	broad.mit.edu	36	2	190944020	190944020	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002194	exon6	c.C847T	p.R283C	.	.	.
STAT1	6772	broad.mit.edu	36	2	191580544	191580544	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007315	exon5	c.G362T	p.R121I	.	.	.
STAT4	6775	broad.mit.edu	36	2	191646144	191646144	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003151	exon5	c.C390A	p.S130S	.	.	.
SLC39A10	57181	broad.mit.edu	36	2	196253034	196253034	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020342	exon2	c.A23C	p.K8T	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196533642	196533642	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon18	c.A2478C	p.K826N	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196545324	196545324	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon16	c.G1945T	p.D649Y	.	.	.
HECW2	57520	broad.mit.edu	36	2	196813520	196813520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020760	exon21	c.G3662A	p.R1221Q	.	.	.
HECW2	57520	broad.mit.edu	36	2	196830817	196830817	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020760	exon18	c.G3394A	p.D1132N	.	.	.
HECW2	57520	broad.mit.edu	36	2	196892668	196892668	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020760	exon9	c.G1191T	p.E397D	.	.	.
HECW2	57520	broad.mit.edu	36	2	196892809	196892809	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020760	exon9	c.C1050T	p.S350S	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197339667	197339667	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012086	exon17	c.G2405A	p.R802Q	.	.	.
PGAP1	80055	broad.mit.edu	36	2	197470137	197470137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024989	exon7	c.G890A	p.R297Q	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197586493	197586493	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195144	exon18	c.A1911G	p.P637P	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197694496	197694496	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195144	exon8	c.C711A	p.V237V	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197965383	197965383	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012433	exon25	c.T3804G	p.I1268M	.	.	.
MOBKL3	25843	broad.mit.edu	36	2	198108590	198108590	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015387	exon3	c.A215G	p.E72G	.	.	.
RFTN2	130132	broad.mit.edu	36	2	198206765	198206765	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144629	exon4	c.G640T	p.E214X	.	.	.
RFTN2	130132	broad.mit.edu	36	2	198219597	198219597	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144629	exon2	c.C178T	p.L60L	.	.	.
SATB2	23314	broad.mit.edu	36	2	199954728	199954728	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015265	exon5	c.A407G	p.D136G	.	.	.
WDR35	57539	broad.mit.edu	36	2	20014665	20014665	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006657	exon14	c.A1495C	p.T499P	.	.	.
C2orf69	205327	broad.mit.edu	36	2	200498718	200498718	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153689	exon2	c.G1022T	p.R341I	.	.	.
KCTD18	130535	broad.mit.edu	36	2	201079851	201079851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152387	exon2	c.G134A	p.R45H	.	.	.
SGOL2	151246	broad.mit.edu	36	2	201145181	201145181	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160046	exon7	c.A1867C	p.I623L	.	.	.
CLK1	1195	broad.mit.edu	36	2	201434366	201434366	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162407	exon3	c.G356T	p.R119I	.	.	.
NDUFB3	4709	broad.mit.edu	36	2	201658487	201658487	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002491	exon3	c.C201A	p.F67L	.	.	.
CASP10	843	broad.mit.edu	36	2	201801922	201801922	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032974	exon10	c.G1437T	p.K479N	.	.	.
ALS2CR12	130540	broad.mit.edu	36	2	201861739	201861739	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127391	exon15	c.A1153C	p.I385L	.	.	.
TRAK2	66008	broad.mit.edu	36	2	201962313	201962313	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015049	exon12	c.A1352G	p.D451G	.	.	.
ALS2CR11	151254	broad.mit.edu	36	2	202109145	202109145	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168217	exon13	c.C1350T	p.N450N	.	.	.
MPP4	58538	broad.mit.edu	36	2	202220778	202220778	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033066	exon21	c.C1600T	p.R534X	.	.	.
MPP4	58538	broad.mit.edu	36	2	202253818	202253818	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033066	exon10	c.A917G	p.H306R	.	.	.
ALS2	57679	broad.mit.edu	36	2	202283004	202283004	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon27	c.C4125A	p.A1375A	.	.	.
ALS2	57679	broad.mit.edu	36	2	202296304	202296304	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon22	c.A3618C	p.K1206N	.	.	.
FZD7	8324	broad.mit.edu	36	2	202608874	202608874	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003507	exon1	c.C1259T	p.A420V	.	.	.
NOP58	51602	broad.mit.edu	36	2	202870375	202870375	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015934	exon11	c.T1100G	p.V367G	.	.	.
FAM117B	150864	broad.mit.edu	36	2	203330206	203330206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173511	exon6	c.G1130A	p.R377H	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203745766	203745766	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114132	exon40	c.C6181A	p.L2061I	.	.	.
ICOS	29851	broad.mit.edu	36	2	204528735	204528735	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012092	exon2	c.G190A	p.D64N	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206879266	206879266	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.A1769G	p.E590G	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206879694	206879694	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G2197T	p.E733X	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206879959	206879959	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.G2462T	p.S821I	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882435	206882435	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.A4938C	p.K1646N	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882680	206882680	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.A5183C	p.K1728T	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206882821	206882821	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.A5324G	p.K1775R	.	.	.
DYTN	391475	broad.mit.edu	36	2	207238967	207238967	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093730	exon10	c.G1012A	p.D338N	.	.	.
DYTN	391475	broad.mit.edu	36	2	207273157	207273157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001093730	exon6	c.C512T	p.A171V	.	.	.
MDH1B	130752	broad.mit.edu	36	2	207312572	207312572	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039845	exon11	c.G1518T	p.E506D	.	.	.
FASTKD2	22868	broad.mit.edu	36	2	207340264	207340264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136194	exon2	c.G602A	p.R201H	.	.	.
FASTKD2	22868	broad.mit.edu	36	2	207359841	207359841	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136194	exon8	c.G1567T	p.D523Y	.	.	.
C2orf80	389073	broad.mit.edu	36	2	208754237	208754237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099334	exon5	c.C244T	p.R82C	.	.	.
IDH1	3417	broad.mit.edu	36	2	208812159	208812159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005896	exon9	c.G1035A	p.K345K	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208858887	208858887	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178000	exon6	c.A806C	p.D269A	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208898897	208898897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015040	exon20	c.G3117T	p.K1039N	.	.	.
PIKFYVE	200576	broad.mit.edu	36	2	208927549	208927549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015040	exon41	c.G6116A	p.R2039Q	.	.	.
MAP2	4133	broad.mit.edu	36	2	210266961	210266961	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002374	exon7	c.A1822G	p.T608A	.	.	.
MAP2	4133	broad.mit.edu	36	2	210267331	210267331	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002374	exon7	c.T2192G	p.I731S	.	.	.
MAP2	4133	broad.mit.edu	36	2	210267519	210267519	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002374	exon7	c.G2380T	p.D794Y	.	.	.
APOB	338	broad.mit.edu	36	2	21079001	21079001	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon29	c.C12798A	p.I4266I	.	.	.
APOB	338	broad.mit.edu	36	2	21082141	21082141	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.C11104A	p.L3702I	.	.	.
APOB	338	broad.mit.edu	36	2	21083768	21083768	+	Missense_Mutation	SNP	C	A	A	rs13306196	byFrequency;byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.G9477T	p.K3159N	.	.	.
APOB	338	broad.mit.edu	36	2	21083899	21083899	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.G9346T	p.G3116X	.	.	.
APOB	338	broad.mit.edu	36	2	21086275	21086275	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.C6970A	p.L2324I	.	.	.
APOB	338	broad.mit.edu	36	2	21088764	21088764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon26	c.C4481T	p.S1494L	.	.	.
LANCL1	10314	broad.mit.edu	36	2	211008416	211008416	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006055	exon9	c.T1063G	p.C355G	.	.	.
APOB	338	broad.mit.edu	36	2	21104407	21104407	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon14	c.C1865A	p.S622Y	.	.	.
LANCL1	10314	broad.mit.edu	36	2	211049339	211049339	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006055	exon2	c.T27G	p.P9P	.	.	.
CPS1	1373	broad.mit.edu	36	2	211149437	211149437	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001875	exon3	c.A359G	p.Y120C	.	.	.
APOB	338	broad.mit.edu	36	2	21118847	21118847	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon3	c.C128T	p.A43V	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212001451	212001451	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005235	exon22	c.G2646A	p.M882I	.	.	.
SPAG16	79582	broad.mit.edu	36	2	214722165	214722165	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024532	exon15	c.G1650A	p.R550R	.	.	.
SPAG16	79582	broad.mit.edu	36	2	214983262	214983262	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024532	exon16	c.G1874A	p.G625D	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215505681	215505681	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon53	c.G7710A	p.K2570K	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215529728	215529728	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon42	c.T6137C	p.V2046A	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215573773	215573773	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon22	c.G3080T	p.S1027I	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215618959	215618959	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon7	c.A719C	p.K240T	.	.	.
FN1	2335	broad.mit.edu	36	2	215944993	215944993	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon38	c.G6055T	p.A2019S	.	.	.
FN1	2335	broad.mit.edu	36	2	215980282	215980282	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon18	c.A2526C	p.R842S	.	.	.
FN1	2335	broad.mit.edu	36	2	215997272	215997272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212476	exon8	c.G1058A	p.G353D	.	.	.
XRCC5	7520	broad.mit.edu	36	2	216763248	216763248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021141	exon17	c.G1890A	p.P630P	.	.	.
MARCH4	57574	broad.mit.edu	36	2	216850701	216850701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020814	exon3	c.C804T	p.R268R	.	.	.
SMARCAL1	50485	broad.mit.edu	36	2	216988286	216988286	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014140	exon3	c.C614A	p.S205Y	.	.	.
SMARCAL1	50485	broad.mit.edu	36	2	217050127	217050127	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014140	exon16	c.C2478T	p.S826S	.	.	.
TNS1	7145	broad.mit.edu	36	2	218458720	218458720	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022648	exon13	c.G733T	p.D245Y	.	.	.
RUFY4	285180	broad.mit.edu	36	2	218648157	218648157	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198483	exon9	c.C697T	p.L233L	.	.	.
RUFY4	285180	broad.mit.edu	36	2	218648243	218648243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198483	exon9	c.C783T	p.Y261Y	.	.	.
ARPC2	10109	broad.mit.edu	36	2	218811667	218811667	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005731	exon5	c.C304A	p.L102I	.	.	.
GPBAR1	151306	broad.mit.edu	36	2	218836196	218836196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077191	exon2	c.G504A	p.S168S	.	.	.
VIL1	7429	broad.mit.edu	36	2	219022208	219022208	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007127	exon20	c.G2389T	p.D797Y	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219215761	219215761	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105537	exon8	c.C3722T	p.S1241L	.	.	.
ZNF142	7701	broad.mit.edu	36	2	219216128	219216128	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105537	exon8	c.C3355A	p.L1119M	.	.	.
CYP27A1	1593	broad.mit.edu	36	2	219385375	219385375	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000784	exon3	c.C633A	p.Y211X	.	.	.
PRKAG3	53632	broad.mit.edu	36	2	219397269	219397269	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017431	exon12	c.A1273G	p.T425A	.	.	.
PRKAG3	53632	broad.mit.edu	36	2	219400269	219400269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017431	exon9	c.G947A	p.G316D	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219577403	219577403	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon33	c.G5070T	p.K1690N	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219603741	219603741	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon9	c.G1075A	p.E359K	.	.	.
CCDC108	255101	broad.mit.edu	36	2	219611964	219611964	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194302	exon3	c.G51T	p.E17D	.	.	.
C2orf24	27013	broad.mit.edu	36	2	219746004	219746004	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015680	exon8	c.T781C	p.C261R	.	.	.
ABCB6	10058	broad.mit.edu	36	2	219786849	219786849	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005689	exon9	c.C1521T	p.L507L	.	.	.
ATG9A	79065	broad.mit.edu	36	2	219797188	219797188	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024085	exon7	c.C1149T	p.F383F	.	.	.
GLB1L	79411	broad.mit.edu	36	2	219812625	219812625	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024506	exon9	c.C804A	p.G268G	.	.	.
PTPRN	5798	broad.mit.edu	36	2	219869719	219869719	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199764	exon16	c.C2036A	p.P679H	.	.	.
GMPPA	29926	broad.mit.edu	36	2	220077142	220077142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013335	exon7	c.C583T	p.R195W	.	.	.
TMEM198	130612	broad.mit.edu	36	2	220122177	220122177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005209	exon4	c.C802T	p.R268C	.	.	.
TMEM198	130612	broad.mit.edu	36	2	220122295	220122295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005209	exon4	c.G920A	p.R307H	.	.	.
INHA	3623	broad.mit.edu	36	2	220148263	220148263	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002191	exon2	c.G872A	p.C291Y	.	.	.
PAX3	5077	broad.mit.edu	36	2	222805114	222805114	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181457	exon5	c.G719T	p.R240I	.	.	.
ACSL3	2181	broad.mit.edu	36	2	223482098	223482098	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004457	exon4	c.A364C	p.K122Q	.	.	.
ACSL3	2181	broad.mit.edu	36	2	223496046	223496046	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004457	exon10	c.A1087C	p.K363Q	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225379194	225379194	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014689	exon34	c.C3707A	p.S1236Y	.	.	.
DOCK10	55619	broad.mit.edu	36	2	225414802	225414802	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014689	exon23	c.C2624A	p.S875Y	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155225	226155225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020864	exon4	c.C848T	p.A283V	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155352	226155352	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020864	exon4	c.C975A	p.P325P	.	.	.
IRS1	3667	broad.mit.edu	36	2	227369516	227369516	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005544	exon1	c.G2183A	p.C728Y	.	.	.
IRS1	3667	broad.mit.edu	36	2	227371030	227371030	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005544	exon1	c.C669T	p.I223I	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227667223	227667223	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon20	c.G1231T	p.G411X	.	.	.
MFF	56947	broad.mit.edu	36	2	227913306	227913306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020194	exon6	c.C484T	p.R162C	.	.	.
MFF	56947	broad.mit.edu	36	2	227920340	227920340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020194	exon8	c.C748T	p.R250C	.	.	.
TM4SF20	79853	broad.mit.edu	36	2	227952134	227952134	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024795	exon1	c.T95C	p.V32A	.	.	.
AGFG1	3267	broad.mit.edu	36	2	228097738	228097738	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004504	exon5	c.G557A	p.R186H	.	.	.
WDR69	164781	broad.mit.edu	36	2	228491749	228491749	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178821	exon11	c.G983T	p.R328I	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228591710	228591710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.C2104T	p.L702L	.	.	.
PID1	55022	broad.mit.edu	36	2	229598661	229598661	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100818	exon3	c.C585T	p.S195S	.	.	.
PID1	55022	broad.mit.edu	36	2	229598805	229598805	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100818	exon3	c.C441T	p.F147F	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230372317	230372317	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon21	c.A3008C	p.K1003T	.	.	.
SLC16A14	151473	broad.mit.edu	36	2	230610468	230610468	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152527	exon5	c.A1405C	p.K469Q	.	.	.
SP140	11262	broad.mit.edu	36	2	230810138	230810138	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007237	exon2	c.G156T	p.E52D	.	.	.
SP140	11262	broad.mit.edu	36	2	230882940	230882940	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007237	exon23	c.G2116A	p.D706N	.	.	.
SP100	6672	broad.mit.edu	36	2	231076046	231076046	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080391	exon20	c.C1742A	p.P581H	.	.	.
PSMD1	5707	broad.mit.edu	36	2	231640068	231640068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002807	exon5	c.C509T	p.S170L	.	.	.
NCL	4691	broad.mit.edu	36	2	232032008	232032008	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005381	exon7	c.C1113T	p.V371V	.	.	.
DIS3L2	129563	broad.mit.edu	36	2	232836376	232836376	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152383	exon13	c.C1641T	p.G547G	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233321965	233321965	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103146	exon5	c.G196T	p.E66X	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233333527	233333527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103146	exon7	c.C473T	p.S158L	.	.	.
KCNJ13	3769	broad.mit.edu	36	2	233341280	233341280	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002242	exon3	c.G948A	p.E316E	.	.	.
NEU2	4759	broad.mit.edu	36	2	233607478	233607478	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005383	exon2	c.C610T	p.R204C	.	.	.
ATG16L1	55054	broad.mit.edu	36	2	233863737	233863737	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190266	exon14	c.C1177T	p.R393X	.	.	.
USP40	55230	broad.mit.edu	36	2	234059177	234059177	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018218	exon27	c.T3175C	p.S1059P	.	.	.
USP40	55230	broad.mit.edu	36	2	234085101	234085101	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018218	exon18	c.C2311T	p.R771C	.	.	.
UGT1A8	54576	broad.mit.edu	36	2	234191593	234191593	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019076	exon1	c.C501A	p.V167V	.	.	.
UGT1A10	54575	broad.mit.edu	36	2	234210273	234210273	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019075	exon1	c.G366A	p.S122S	.	.	.
UGT1A9	54600	broad.mit.edu	36	2	234245627	234245627	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021027	exon1	c.G308A	p.R103Q	.	.	.
UGT1A7	54577	broad.mit.edu	36	2	234255783	234255783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019077	exon1	c.G461A	p.G154D	.	.	.
UGT1A5	54579	broad.mit.edu	36	2	234286874	234286874	+	Silent	SNP	G	A	A	rs17868332	byCluster;byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019078	exon1	c.G498A	p.S166S	.	.	.
DNAJB3	414061	broad.mit.edu	36	2	234317115	234317115	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001394	exon1	c.G187A	p.D63N	.	.	.
IQCA1	79781	broad.mit.edu	36	2	237070636	237070636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024726	exon2	c.G245A	p.R82H	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237947976	237947976	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004369	exon8	c.G3497T	p.G1166V	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237952048	237952048	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004369	exon6	c.G2467T	p.G823C	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237952537	237952537	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004369	exon6	c.G1978A	p.D660N	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237954408	237954408	+	Missense_Mutation	SNP	C	T	T	rs34934127	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004369	exon5	c.G1786A	p.A596T	.	.	.
MLPH	79083	broad.mit.edu	36	2	238120026	238120026	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042467	exon12	c.A1494G	p.R498R	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238326847	238326847	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004735	exon7	c.G568A	p.E190K	.	.	.
RBM44	375316	broad.mit.edu	36	2	238391554	238391554	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080504	exon3	c.T1256C	p.V419A	.	.	.
PER2	8864	broad.mit.edu	36	2	238844729	238844729	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022817	exon6	c.G735A	p.P245P	.	.	.
TRAF3IP1	26146	broad.mit.edu	36	2	238917885	238917885	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015650	exon9	c.G1168T	p.E390X	.	.	.
ATAD2B	54454	broad.mit.edu	36	2	23962106	23962106	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017552	exon5	c.G670T	p.E224X	.	.	.
NDUFA10	4705	broad.mit.edu	36	2	240593324	240593324	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004544	exon8	c.G866A	p.R289H	.	.	.
OR6B2	389090	broad.mit.edu	36	2	240617678	240617678	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005853	exon1	c.T842C	p.V281A	.	.	.
OR6B3	150681	broad.mit.edu	36	2	240633887	240633887	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173351	exon1	c.C276A	p.I92I	.	.	.
PPP1R7	5510	broad.mit.edu	36	2	241746614	241746614	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002712	exon4	c.T280G	p.F94V	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241828129	241828129	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005336	exon18	c.C2251T	p.R751C	.	.	.
FARP2	9855	broad.mit.edu	36	2	242029566	242029566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014808	exon13	c.C1333T	p.R445C	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24387048	24387048	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147152	exon6	c.A370G	p.N124D	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24783604	24783604	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003743	exon11	c.G1761T	p.E587D	.	.	.
DNAJC27	51277	broad.mit.edu	36	2	25043651	25043651	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198559	exon2	c.C103T	p.R35X	.	.	.
KIF3C	3797	broad.mit.edu	36	2	26057433	26057433	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002254	exon1	c.G858A	p.R286R	.	.	.
ACP1	52	broad.mit.edu	36	2	261878	261878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007099	exon2	c.G56A	p.R19Q	.	.	.
HADHA	3030	broad.mit.edu	36	2	26274091	26274091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000182	exon14	c.C1452T	p.I484I	.	.	.
HADHA	3030	broad.mit.edu	36	2	26290863	26290863	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000182	exon9	c.C871T	p.R291X	.	.	.
HADHB	3032	broad.mit.edu	36	2	26359413	26359413	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000183	exon12	c.C1051A	p.L351I	.	.	.
OTOF	9381	broad.mit.edu	36	2	26559883	26559883	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194248	exon13	c.A1343G	p.N448S	.	.	.
ACP1	52	broad.mit.edu	36	2	267042	267042	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007099	exon5	c.G356A	p.S119N	.	.	.
ACP1	52	broad.mit.edu	36	2	267235	267235	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007099	exon6	c.C408T	p.D136D	.	.	.
CENPA	1058	broad.mit.edu	36	2	26869134	26869134	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001809	exon3	c.G217T	p.E73X	.	.	.
TCF23	150921	broad.mit.edu	36	2	27229174	27229174	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175769	exon3	c.G580T	p.V194F	.	.	.
SLC5A6	8884	broad.mit.edu	36	2	27280888	27280888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021095	exon9	c.C950T	p.A317V	.	.	.
CAD	790	broad.mit.edu	36	2	27294305	27294305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004341	exon2	c.G139A	p.A47T	.	.	.
CAD	790	broad.mit.edu	36	2	27319302	27319302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004341	exon42	c.G6437A	p.R2146Q	.	.	.
DNAJC5G	285126	broad.mit.edu	36	2	27353194	27353194	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173650	exon3	c.G94T	p.D32Y	.	.	.
GTF3C2	2976	broad.mit.edu	36	2	27405269	27405269	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035521	exon15	c.T2073G	p.A691A	.	.	.
IFT172	26160	broad.mit.edu	36	2	27521691	27521691	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon46	c.C5044T	p.R1682X	.	.	.
IFT172	26160	broad.mit.edu	36	2	27522665	27522665	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon43	c.A4721G	p.D1574G	.	.	.
GCKR	2646	broad.mit.edu	36	2	27582114	27582114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001486	exon10	c.G776A	p.R259Q	.	.	.
GCKR	2646	broad.mit.edu	36	2	27599652	27599652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001486	exon19	c.G1720A	p.A574T	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27653934	27653934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.G991A	p.E331K	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27654867	27654867	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.G1924T	p.E642X	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27655061	27655061	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.A2118G	p.G706G	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27658066	27658066	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.G5123T	p.R1708I	.	.	.
C2orf16	84226	broad.mit.edu	36	2	27658358	27658358	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032266	exon1	c.A5415G	p.R1805R	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27745746	27745746	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018158	exon5	c.C1333T	p.R445W	.	.	.
SLC4A1AP	22950	broad.mit.edu	36	2	27751925	27751925	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018158	exon6	c.G1368T	p.K456N	.	.	.
PLB1	151056	broad.mit.edu	36	2	28608553	28608553	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170585	exon9	c.C543A	p.P181P	.	.	.
PLB1	151056	broad.mit.edu	36	2	28709371	28709371	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170585	exon55	c.C4026T	p.R1342R	.	.	.
WDR43	23160	broad.mit.edu	36	2	28990459	28990459	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015131	exon5	c.G627A	p.T209T	.	.	.
LCLAT1	253558	broad.mit.edu	36	2	30716522	30716522	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182551	exon7	c.G778T	p.A260S	.	.	.
GALNT14	79623	broad.mit.edu	36	2	31021253	31021253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024572	exon8	c.C802T	p.R268C	.	.	.
EHD3	30845	broad.mit.edu	36	2	31342769	31342769	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014600	exon6	c.G1303A	p.D435N	.	.	.
XDH	7498	broad.mit.edu	36	2	31416031	31416031	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000379	exon34	c.T3602C	p.V1201A	.	.	.
XDH	7498	broad.mit.edu	36	2	31426583	31426583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000379	exon25	c.G2642A	p.R881Q	.	.	.
DPY30	84661	broad.mit.edu	36	2	32102822	32102822	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032574	exon5	c.A235C	p.N79H	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328660	32328660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.G1777A	p.D593N	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328769	32328769	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.G1668A	p.E556E	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32329927	32329927	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.A510C	p.E170D	.	.	.
TSSC1	7260	broad.mit.edu	36	2	3240121	3240121	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003310	exon4	c.G372A	p.E124E	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32494223	32494223	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon10	c.A2360C	p.N787T	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32564306	32564306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon40	c.G7789A	p.A2597T	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32586648	32586648	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon51	c.A9798C	p.K3266N	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32653905	32653905	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon66	c.G13323T	p.K4441N	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33467788	33467788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166264	exon27	c.C3641T	p.T1214M	.	.	.
RASGRP3	25780	broad.mit.edu	36	2	33634102	33634102	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170672	exon16	c.C1543A	p.L515I	.	.	.
TTC15	51112	broad.mit.edu	36	2	3384671	3384671	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016030	exon3	c.C1164T	p.I388I	.	.	.
TTC15	51112	broad.mit.edu	36	2	3407399	3407399	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016030	exon5	c.C1375A	p.L459I	.	.	.
VIT	5212	broad.mit.edu	36	2	36886116	36886116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053276	exon14	c.C1194A	p.F398L	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37069445	37069445	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019024	exon35	c.C5759A	p.S1920X	.	.	.
HEATR5B	54497	broad.mit.edu	36	2	37109329	37109329	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019024	exon23	c.T3600G	p.S1200R	.	.	.
SULT6B1	391365	broad.mit.edu	36	2	37248593	37248593	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032377	exon7	c.T787C	p.C263R	.	.	.
C2orf56	55471	broad.mit.edu	36	2	37328858	37328858	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144736	exon10	c.A1187C	p.K396T	.	.	.
PRKD3	23683	broad.mit.edu	36	2	37358625	37358625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005813	exon8	c.G1184A	p.S395N	.	.	.
ATL2	64225	broad.mit.edu	36	2	38390117	38390117	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022374	exon9	c.C979A	p.L327M	.	.	.
DHX57	90957	broad.mit.edu	36	2	38941800	38941800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198963	exon5	c.C1256T	p.S419L	.	.	.
DHX57	90957	broad.mit.edu	36	2	38942034	38942034	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198963	exon5	c.C1022A	p.S341Y	.	.	.
SOS1	6654	broad.mit.edu	36	2	39135444	39135444	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005633	exon5	c.G535T	p.D179Y	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39363181	39363181	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003618	exon22	c.C1606A	p.L536I	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39406850	39406850	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003618	exon9	c.A603C	p.G201G	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40509685	40509685	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001112800	exon1	c.G1240T	p.G414W	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40510181	40510181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112800	exon1	c.C744T	p.F248F	.	.	.
EML4	27436	broad.mit.edu	36	2	42410563	42410563	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145076	exon22	c.C2484A	p.V828V	.	.	.
MTA3	57504	broad.mit.edu	36	2	42659797	42659797	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020744	exon3	c.G143A	p.R48Q	.	.	.
THADA	63892	broad.mit.edu	36	2	43655136	43655136	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022065	exon11	c.G1572T	p.E524D	.	.	.
LOC728819	728819	broad.mit.edu	36	2	43756761	43756761	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101330	exon1	c.C205T	p.R69C	.	.	.
PLEKHH2	130271	broad.mit.edu	36	2	43790663	43790663	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172069	exon12	c.G1997T	p.S666I	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43877363	43877363	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016008	exon8	c.T579G	p.D193E	.	.	.
DYNC2LI1	51626	broad.mit.edu	36	2	43882338	43882338	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016008	exon10	c.C788A	p.S263Y	.	.	.
ABCG8	64241	broad.mit.edu	36	2	43926892	43926892	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022437	exon3	c.G260A	p.G87D	.	.	.
ABCG8	64241	broad.mit.edu	36	2	43955948	43955948	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022437	exon11	c.G1648A	p.A550T	.	.	.
PREPL	9581	broad.mit.edu	36	2	44440260	44440260	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042385	exon1	c.C99T	p.F33F	.	.	.
SIX2	10736	broad.mit.edu	36	2	45087039	45087039	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016932	exon2	c.C650T	p.T217I	.	.	.
SRBD1	55133	broad.mit.edu	36	2	45666278	45666278	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018079	exon5	c.A788T	p.E263V	.	.	.
SRBD1	55133	broad.mit.edu	36	2	45680179	45680179	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018079	exon4	c.G561T	p.E187D	.	.	.
EPAS1	2034	broad.mit.edu	36	2	46427661	46427661	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001430	exon2	c.C172T	p.R58X	.	.	.
EPAS1	2034	broad.mit.edu	36	2	46459339	46459339	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001430	exon11	c.G1483A	p.D495N	.	.	.
SOCS5	9655	broad.mit.edu	36	2	46839636	46839636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014011	exon2	c.C463T	p.R155C	.	.	.
MSH2	4436	broad.mit.edu	36	2	47547439	47547439	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000251	exon10	c.A1649C	p.K550T	.	.	.
MSH6	2956	broad.mit.edu	36	2	47881462	47881462	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.G2836T	p.E946X	 MSH6,endometrium,NS,Substitution - Nonsense,0 	.	.
MSH6	2956	broad.mit.edu	36	2	47887257	47887257	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000179	exon9	c.G3964T	p.E1322X	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48701539	48701539	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006872	exon2	c.C67T	p.R23W	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48727149	48727149	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006872	exon6	c.G442T	p.A148S	.	.	.
FSHR	2492	broad.mit.edu	36	2	49043495	49043495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181446	exon9	c.G1891A	p.E631K	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50576670	50576670	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon16	c.C3067A	p.L1023I	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50578116	50578116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon15	c.C2858T	p.S953L	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50611983	50611983	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135659	exon12	c.C2353T	p.R785W	.	.	.
ERLEC1	27248	broad.mit.edu	36	2	53889860	53889860	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127397	exon10	c.C1047T	p.V349V	.	.	.
GPR75	10936	broad.mit.edu	36	2	53934666	53934666	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006794	exon2	c.C732T	p.V244V	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54639511	54639511	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178313	exon1	c.G92T	p.R31I	.	.	.
SPTBN1	6711	broad.mit.edu	36	2	54711745	54711745	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178313	exon15	c.G3018A	p.A1006A	.	.	.
RTN4	57142	broad.mit.edu	36	2	55106629	55106629	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020532	exon3	c.G2110T	p.E704X	.	.	.
RTN4	57142	broad.mit.edu	36	2	55107035	55107035	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020532	exon3	c.T1704C	p.G568G	.	.	.
RTN4	57142	broad.mit.edu	36	2	55108124	55108124	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020532	exon3	c.A615C	p.E205D	.	.	.
MTIF2	4528	broad.mit.edu	36	2	55317431	55317431	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005369	exon17	c.G2041T	p.D681Y	.	.	.
MTIF2	4528	broad.mit.edu	36	2	55333247	55333247	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005369	exon9	c.A711G	p.G237G	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55377096	55377096	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135597	exon30	c.C4890T	p.D1630D	.	.	.
CCDC88A	55704	broad.mit.edu	36	2	55444622	55444622	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135597	exon6	c.A454G	p.T152A	.	.	.
CCDC104	112942	broad.mit.edu	36	2	55604391	55604391	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080667	exon3	c.G211T	p.E71X	.	.	.
SMEK2	57223	broad.mit.edu	36	2	55667343	55667343	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122964	exon6	c.C1031A	p.S344Y	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55760426	55760426	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033109	exon8	c.C574T	p.R192X	.	.	.
PNPT1	87178	broad.mit.edu	36	2	55774354	55774354	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033109	exon1	c.G109T	p.A37S	.	.	.
BCL11A	53335	broad.mit.edu	36	2	60541458	60541458	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022893	exon4	c.G2093A	p.R698H	.	.	.
REL	5966	broad.mit.edu	36	2	60975053	60975053	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002908	exon3	c.A171G	p.G57G	.	.	.
KIAA1841	84542	broad.mit.edu	36	2	61178465	61178465	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032506	exon12	c.C1339T	p.R447W	.	.	.
USP34	9736	broad.mit.edu	36	2	61269047	61269047	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon80	c.C10335T	p.D3445D	.	.	.
XPO1	7514	broad.mit.edu	36	2	61568871	61568871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003400	exon19	c.G2246A	p.R749Q	.	.	.
FAM161A	84140	broad.mit.edu	36	2	61907118	61907118	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032180	exon6	c.G1959T	p.E653D	.	.	.
TMEM17	200728	broad.mit.edu	36	2	62582069	62582069	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198276	exon4	c.C376A	p.L126I	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63514528	63514528	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015910	exon9	c.G680A	p.R227Q	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63565622	63565622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015910	exon5	c.G257A	p.R86Q	.	.	.
VPS54	51542	broad.mit.edu	36	2	64014588	64014588	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005739	exon12	c.G1426T	p.E476X	.	.	.
VPS54	51542	broad.mit.edu	36	2	64042697	64042697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005739	exon7	c.C973T	p.R325W	.	.	.
AFTPH	54812	broad.mit.edu	36	2	64632452	64632452	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017657	exon2	c.G340T	p.E114X	.	.	.
SLC1A4	6509	broad.mit.edu	36	2	65097120	65097120	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003038	exon5	c.C843T	p.I281I	.	.	.
MEIS1	4211	broad.mit.edu	36	2	66520545	66520545	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002398	exon3	c.C306T	p.R102R	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67483886	67483886	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019002	exon5	c.G568T	p.E190X	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67485864	67485864	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019002	exon5	c.T2546G	p.I849S	.	.	.
PLEK	5341	broad.mit.edu	36	2	68469060	68469060	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002664	exon6	c.A695G	p.D232G	.	.	.
PROKR1	10887	broad.mit.edu	36	2	68736014	68736014	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138964	exon2	c.G984T	p.E328D	.	.	.
ANXA4	307	broad.mit.edu	36	2	69899261	69899261	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001153	exon10	c.C655G	p.Q219E	.	.	.
ASPRV1	151516	broad.mit.edu	36	2	70041705	70041705	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152792	exon1	c.T620C	p.V207A	.	.	.
PCYOX1	51449	broad.mit.edu	36	2	70357868	70357868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016297	exon6	c.G1358A	p.R453Q	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71504074	71504074	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014497	exon22	c.G3922T	p.D1308Y	.	.	.
ZNF638	27332	broad.mit.edu	36	2	71513834	71513834	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014497	exon27	c.C5784A	p.F1928L	.	.	.
RAB11FIP5	26056	broad.mit.edu	36	2	73169861	73169861	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015470	exon2	c.C522T	p.S174S	.	.	.
SMYD5	10322	broad.mit.edu	36	2	73300792	73300792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006062	exon3	c.G311A	p.R104H	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73529739	73529739	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon8	c.G2574A	p.A858A	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73533358	73533358	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon8	c.G6193T	p.D2065Y	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73534182	73534182	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon8	c.G7017A	p.T2339T	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73571170	73571170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon10	c.C8573T	p.S2858L	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73653086	73653086	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon16	c.A10571G	p.H3524R	.	.	.
ALMS1	7840	broad.mit.edu	36	2	73653841	73653841	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015120	exon16	c.G11326A	p.E3776K	.	.	.
STAMBP	10617	broad.mit.edu	36	2	73940696	73940696	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006463	exon10	c.C1128A	p.F376L	.	.	.
TET3	200424	broad.mit.edu	36	2	74127791	74127791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144993	exon1	c.G834A	p.E278E	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74307699	74307699	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133478	exon27	c.C2983T	p.H995Y	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74322666	74322666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133478	exon20	c.C2081T	p.A694V	.	.	.
MOGS	7841	broad.mit.edu	36	2	74543841	74543841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146158	exon4	c.G442A	p.A148T	.	.	.
LOXL3	84695	broad.mit.edu	36	2	74617481	74617481	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032603	exon5	c.T775C	p.S259P	.	.	.
C2orf65	130951	broad.mit.edu	36	2	74695737	74695737	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138804	exon3	c.C288A	p.L96L	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74754181	74754181	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004263	exon6	c.C640T	p.R214W	.	.	.
HK2	3099	broad.mit.edu	36	2	74970085	74970085	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000189	exon17	c.G2581T	p.D861Y	.	.	.
TACR1	6869	broad.mit.edu	36	2	75201258	75201258	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015727	exon2	c.C534T	p.V178V	.	.	.
C2orf3	6936	broad.mit.edu	36	2	75750911	75750911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003203	exon15	c.G1964A	p.R655H	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	76829368	76829368	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134745	exon4	c.G1734A	p.S578S	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	77600080	77600080	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024993	exon3	c.C423A	p.S141S	.	.	.
REG3G	130120	broad.mit.edu	36	2	79107730	79107730	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008387	exon4	c.C258A	p.S86S	.	.	.
REG3A	5068	broad.mit.edu	36	2	79237878	79237878	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002580	exon6	c.C510A	p.V170V	.	.	.
C2orf89	129293	broad.mit.edu	36	2	84904824	84904824	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080824	exon5	c.G951T	p.K317N	.	.	.
KCMF1	56888	broad.mit.edu	36	2	85115732	85115732	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020122	exon3	c.G267A	p.T89T	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86122675	86122675	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon24	c.C3420T	p.A1140A	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86150657	86150657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon13	c.C1861T	p.P621S	.	.	.
PTCD3	55037	broad.mit.edu	36	2	86205642	86205642	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017952	exon10	c.G730A	p.A244T	.	.	.
PTCD3	55037	broad.mit.edu	36	2	86213053	86213053	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017952	exon17	c.C1368A	p.F456L	.	.	.
IMMT	10989	broad.mit.edu	36	2	86226792	86226792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100169	exon14	c.C1570T	p.R524C	.	.	.
VPS24	51652	broad.mit.edu	36	2	86643956	86643956	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193517	exon1	c.G27T	p.E9D	.	.	.
CD8B	926	broad.mit.edu	36	2	86938814	86938814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004931	exon2	c.C280T	p.R94W	.	.	.
KIDINS220	57498	broad.mit.edu	36	2	8789391	8789391	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020738	exon30	c.G4226T	p.R1409I	.	.	.
SMYD1	150572	broad.mit.edu	36	2	88187075	88187075	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198274	exon8	c.C1098A	p.A366A	.	.	.
RPIA	22934	broad.mit.edu	36	2	88816322	88816322	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144563	exon6	c.G549T	p.K183N	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	8916329	8916329	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138799	exon13	c.T1494G	p.F498L	.	.	.
MBOAT2	129642	broad.mit.edu	36	2	8930877	8930877	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138799	exon8	c.C695T	p.A232V	.	.	.
ASAP2	8853	broad.mit.edu	36	2	9413850	9413850	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135191	exon14	c.G1252T	p.E418X	.	.	.
TEKT4	150483	broad.mit.edu	36	2	94905119	94905119	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144705	exon5	c.G996T	p.K332N	.	.	.
MRPS5	64969	broad.mit.edu	36	2	95116832	95116832	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031902	exon12	c.G1290A	p.T430T	.	.	.
ZNF514	84874	broad.mit.edu	36	2	95179624	95179624	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032788	exon5	c.G333A	p.S111S	.	.	.
ZNF2	7549	broad.mit.edu	36	2	95211124	95211124	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017396	exon4	c.G698A	p.R233Q	.	.	.
IAH1	285148	broad.mit.edu	36	2	9535922	9535922	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039613	exon3	c.C255A	p.F85L	.	.	.
KCNIP3	30818	broad.mit.edu	36	2	95411138	95411138	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034914	exon5	c.A437C	p.N146T	.	.	.
ADAM17	6868	broad.mit.edu	36	2	9559786	9559786	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003183	exon13	c.A1615G	p.N539D	.	.	.
TRIM43	129868	broad.mit.edu	36	2	95623807	95623807	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138800	exon2	c.C309A	p.F103L	.	.	.
ASTL	431705	broad.mit.edu	36	2	96164864	96164864	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002036	exon3	c.G196T	p.E66X	.	.	.
STARD7	56910	broad.mit.edu	36	2	96221894	96221894	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020151	exon6	c.C783T	p.F261F	.	.	.
SNRNP200	23020	broad.mit.edu	36	2	96317339	96317339	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014014	exon25	c.C3354T	p.I1118I	.	.	.
NCAPH	23397	broad.mit.edu	36	2	96396738	96396738	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015341	exon15	c.T1898C	p.I633T	.	.	.
YWHAQ	10971	broad.mit.edu	36	2	9649071	9649071	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006826	exon3	c.G319T	p.A107S	.	.	.
FER1L5	90342	broad.mit.edu	36	2	96729077	96729078	+	Missense_Mutation	DNP	CG	TA	TA	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001113382	exon42	c.4755_4756TA	.	.	.	NA
FER1L5	90342	broad.mit.edu	36	2	96729811	96729811	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113382	exon44	c.C5027A	p.T1676N	.	.	.
FER1L5	90342	broad.mit.edu	36	2	96733793	96733793	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113382	exon51	c.A6024G	p.A2008A	.	.	.
ANKRD36B	57730	broad.mit.edu	36	2	97498643	97498643	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025190	exon37	c.G2605T	p.E869X	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97870973	97870973	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015348	exon4	c.G333A	p.E111E	.	.	.
CNGA3	1261	broad.mit.edu	36	2	98378760	98378760	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001298	exon8	c.T695C	p.M232T	.	.	.
MGAT4A	11320	broad.mit.edu	36	2	98628390	98628390	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160154	exon6	c.A438C	p.K146N	.	.	.
C2orf55	343990	broad.mit.edu	36	2	98779035	98779035	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207362	exon9	c.C2729A	p.S910X	.	.	.
TSGA10	80705	broad.mit.edu	36	2	99061566	99061566	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182911	exon11	c.T870G	p.S290R	.	.	.
TSGA10	80705	broad.mit.edu	36	2	99091835	99091835	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182911	exon6	c.G103T	p.E35X	.	.	.
LIPT1	51601	broad.mit.edu	36	2	99145123	99145123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145197	exon4	c.G271A	p.E91K	.	.	.
LYG2	254773	broad.mit.edu	36	2	99228262	99228262	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175735	exon4	c.C276T	p.C92C	.	.	.
REV1	51455	broad.mit.edu	36	2	99384246	99384246	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016316	exon23	c.C3646T	p.L1216L	.	.	.
AFF3	3899	broad.mit.edu	36	2	99576540	99576540	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon14	c.C2090T	p.S697F	.	.	.
AFF3	3899	broad.mit.edu	36	2	99990334	99990334	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025108	exon5	c.C270A	p.L90L	.	.	.
ANAPC1	64682	broad.mit.edu	36	2	112256562	112256562	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EPB41L5	57669	broad.mit.edu	36	2	120641500	120641500	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MKI67IP	84365	broad.mit.edu	36	2	122202408	122202408	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124908530	124908530	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	124998341	124998341	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRIB2	28951	broad.mit.edu	36	2	12782253	12782253	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140959575	140959575	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140961784	140961784	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KYNU	8942	broad.mit.edu	36	2	143459983	143459983	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ARHGAP15	55843	broad.mit.edu	36	2	143690496	143690496	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NMI	9111	broad.mit.edu	36	2	151836375	151836375	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NEB	4703	broad.mit.edu	36	2	152140569	152140569	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DDX1	1653	broad.mit.edu	36	2	15687283	15687283	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC4A10	57282	broad.mit.edu	36	2	162427822	162427822	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DPP4	1803	broad.mit.edu	36	2	162612154	162612154	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GCG	2641	broad.mit.edu	36	2	162708661	162708661	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GCA	25801	broad.mit.edu	36	2	162924962	162924962	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163403191	163403191	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165727596	165727596	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165954592	165954592	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAM49A	81553	broad.mit.edu	36	2	16605829	16605829	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TTC21B	79809	broad.mit.edu	36	2	166484201	166484201	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167818782	167818782	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C2orf77	129881	broad.mit.edu	36	2	170245996	170245996	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CHRNA1	1134	broad.mit.edu	36	2	175332450	175332450	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AGPS	8540	broad.mit.edu	36	2	178080939	178080939	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179110313	179110313	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179170798	179170798	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179236882	179236882	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179240701	179240701	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179265079	179265079	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179266990	179266990	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTN	7273	broad.mit.edu	36	2	179290362	179290362	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179410722	179410722	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CCDC141	285025	broad.mit.edu	36	2	179429379	179429379	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CWC22	57703	broad.mit.edu	36	2	180523907	180523907	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NCKAP1	10787	broad.mit.edu	36	2	183530422	183530422	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185172049	185172049	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CALCRL	10203	broad.mit.edu	36	2	187925075	187925075	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189571229	189571229	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196621262	196621262	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STK17B	9262	broad.mit.edu	36	2	196718869	196718869	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HECW2	57520	broad.mit.edu	36	2	196879448	196879448	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MOBKL3	25843	broad.mit.edu	36	2	198096582	198096582	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NOP58	51602	broad.mit.edu	36	2	202866103	202866103	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAM117B	150864	broad.mit.edu	36	2	203328653	203328653	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
APOB	338	broad.mit.edu	36	2	21092810	21092810	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212278371	212278371	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212298040	212298040	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234581445	234581445	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IQCA1	79781	broad.mit.edu	36	2	236965460	236965460	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238321737	238321737	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RBM44	375316	broad.mit.edu	36	2	238394644	238394644	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HADHB	3032	broad.mit.edu	36	2	26346315	26346315	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HADHB	3032	broad.mit.edu	36	2	26355694	26355694	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C2orf70	339778	broad.mit.edu	36	2	26655811	26655811	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LCLAT1	253558	broad.mit.edu	36	2	30535974	30535974	+	5'UTR	SNP	A	G	G	rs55723517	by1000genomes	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SPAST	6683	broad.mit.edu	36	2	32168184	32168184	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36627624	36627624	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STRN	6801	broad.mit.edu	36	2	36950385	36950385	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
QPCT	25797	broad.mit.edu	36	2	37440515	37440515	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SRSF7	6432	broad.mit.edu	36	2	38829305	38829305	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDKL4	344387	broad.mit.edu	36	2	39294043	39294043	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM178	130733	broad.mit.edu	36	2	39787692	39787692	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
THADA	63892	broad.mit.edu	36	2	43508879	43508879	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SRBD1	55133	broad.mit.edu	36	2	45653840	45653840	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CRIPT	9419	broad.mit.edu	36	2	46704800	46704800	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NRXN1	9378	broad.mit.edu	36	2	50578363	50578363	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ASB3	51130	broad.mit.edu	36	2	53780901	53780901	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ASB3	51130	broad.mit.edu	36	2	53895173	53895173	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EFEMP1	2202	broad.mit.edu	36	2	55951631	55951631	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ETAA1	54465	broad.mit.edu	36	2	67490679	67490679	+	3'UTR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
WDR92	116143	broad.mit.edu	36	2	68238264	68238264	+	5'Flank	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANTXR1	84168	broad.mit.edu	36	2	69225955	69225955	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74303593	74303593	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C2orf3	6936	broad.mit.edu	36	2	75787293	75787293	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79990441	79990441	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TCF7L1	83439	broad.mit.edu	36	2	85364219	85364219	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RETSAT	54884	broad.mit.edu	36	2	85432308	85432308	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89091066	89091066	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89223349	89223349	+	IGR	SNP	G	A	A	rs11546039	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89715353	89715353	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89715577	89715577	+	IGR	SNP	T	G	G	rs11546053	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89746308	89746308	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89830485	89830485	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	2	89830688	89830688	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97745101	97745101	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AFF3	3899	broad.mit.edu	36	2	99727041	99727041	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MRPS22	56945	broad.mit.edu	36	3	140554280	140554281	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020191	exon6	c.834_835insA	p.N278fs	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181819827	181819827	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon16	c.2179delA	p.I727fs	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101050405	101050405	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014890	exon2	c.G2085T	p.V695V	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101051897	101051897	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014890	exon2	c.A593C	p.K198T	.	.	.
FILIP1L	11259	broad.mit.edu	36	3	101125915	101125915	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182909	exon4	c.G454T	p.E152X	.	.	.
C3orf26	84319	broad.mit.edu	36	3	101348539	101348539	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167924	exon2	c.G43T	p.E15X	.	.	.
TOMM70A	9868	broad.mit.edu	36	3	101569672	101569672	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014820	exon11	c.C1579A	p.L527M	.	.	.
GPR128	84873	broad.mit.edu	36	3	101856555	101856555	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032787	exon12	c.G1566A	p.P522P	.	.	.
GPR128	84873	broad.mit.edu	36	3	101870586	101870586	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032787	exon15	c.G2083T	p.D695Y	.	.	.
GPR128	84873	broad.mit.edu	36	3	101896491	101896491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032787	exon16	c.G2350A	p.E784K	.	.	.
TFG	10342	broad.mit.edu	36	3	101934145	101934145	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006070	exon5	c.C519A	p.N173K	.	.	.
TFG	10342	broad.mit.edu	36	3	101950016	101950016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006070	exon8	c.G1154A	p.R385H	.	.	.
ABI3BP	25890	broad.mit.edu	36	3	102104165	102104165	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015429	exon3	c.G336T	p.K112N	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10217116	10217116	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001570	exon3	c.A341C	p.K114T	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102430955	102430955	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016247	exon17	c.G3592T	p.E1198X	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102445396	102445396	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016247	exon13	c.C2469A	p.I823I	.	.	.
IMPG2	50939	broad.mit.edu	36	3	102445749	102445749	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016247	exon13	c.A2116G	p.I706V	.	.	.
IRAK2	3656	broad.mit.edu	36	3	10255549	10255549	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001570	exon12	c.G1591A	p.D531N	.	.	.
TATDN2	9797	broad.mit.edu	36	3	10265911	10265911	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014760	exon2	c.G27T	p.K9N	.	.	.
CEP97	79598	broad.mit.edu	36	3	102966463	102966463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024548	exon11	c.C1976T	p.T659I	.	.	.
ATP2B2	491	broad.mit.edu	36	3	10357369	10357369	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001683	exon17	c.C2802T	p.I934I	.	.	.
CCDC54	84692	broad.mit.edu	36	3	108579505	108579505	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032600	exon1	c.C381T	p.L127L	.	.	.
BBX	56987	broad.mit.edu	36	3	108957151	108957151	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020235	exon10	c.C842T	p.S281L	.	.	.
CD47	961	broad.mit.edu	36	3	109261037	109261037	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198793	exon5	c.A643T	p.T215S	.	.	.
MYH15	22989	broad.mit.edu	36	3	109694652	109694652	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014981	exon9	c.C834A	p.I278I	.	.	.
KIAA1524	57650	broad.mit.edu	36	3	109758809	109758809	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020890	exon17	c.C2156T	p.S719F	.	.	.
KIAA1524	57650	broad.mit.edu	36	3	109777849	109777849	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020890	exon8	c.T853G	p.L285V	.	.	.
MORC1	27136	broad.mit.edu	36	3	110300981	110300981	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014429	exon6	c.G337T	p.D113Y	.	.	.
HRH1	3269	broad.mit.edu	36	3	11276192	11276192	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000861	exon3	c.C469A	p.L157M	.	.	.
ZBED2	79413	broad.mit.edu	36	3	112795203	112795203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024508	exon2	c.G536A	p.R179Q	.	.	.
CD96	10225	broad.mit.edu	36	3	112802287	112802287	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005816	exon7	c.G923T	p.R308I	.	.	.
CD96	10225	broad.mit.edu	36	3	112802392	112802392	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005816	exon7	c.C1028A	p.S343Y	.	.	.
PLCXD2	257068	broad.mit.edu	36	3	113047398	113047398	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153268	exon4	c.A907C	p.R303R	.	.	.
PHLDB2	90102	broad.mit.edu	36	3	113115070	113115070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134439	exon3	c.C1550T	p.A517V	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113382133	113382133	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183061	exon22	c.G2716T	p.G906X	.	.	.
SLC9A10	285335	broad.mit.edu	36	3	113405841	113405841	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183061	exon17	c.G2086T	p.D696Y	.	.	.
CD200	4345	broad.mit.edu	36	3	113549343	113549343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001004196	exon5	c.G745A	p.D249N	.	.	.
CCDC80	151887	broad.mit.edu	36	3	113840790	113840790	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199511	exon2	c.T653C	p.L218P	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114126049	114126049	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170780	exon6	c.A833G	p.E278G	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114130526	114130526	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170780	exon4	c.C527T	p.A176V	.	.	.
CD200R1	131450	broad.mit.edu	36	3	114130976	114130976	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170780	exon3	c.A202C	p.N68H	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114769237	114769237	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017699	exon3	c.T505G	p.F169V	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114859191	114859191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.G4028A	p.R1343H	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114859626	114859626	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.C3593A	p.S1198Y	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114860571	114860571	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.C2648A	p.S883Y	.	.	.
GRAMD1C	54762	broad.mit.edu	36	3	115139652	115139652	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172105	exon10	c.G1048A	p.V350I	.	.	.
KIAA1407	57577	broad.mit.edu	36	3	115236673	115236673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020817	exon6	c.C607T	p.R203C	.	.	.
DRD3	1814	broad.mit.edu	36	3	115349081	115349081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000796	exon4	c.G397A	p.V133I	.	.	.
TIGIT	201633	broad.mit.edu	36	3	115497382	115497382	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173799	exon2	c.G362T	p.R121I	.	.	.
LSAMP	4045	broad.mit.edu	36	3	117287867	117287867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002338	exon2	c.G382A	p.V128I	.	.	.
LSAMP	4045	broad.mit.edu	36	3	117287959	117287959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002338	exon2	c.G290A	p.R97Q	.	.	.
C3orf31	132001	broad.mit.edu	36	3	11860566	11860566	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138807	exon2	c.G255A	p.T85T	.	.	.
UPK1B	7348	broad.mit.edu	36	3	120405463	120405463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006952	exon8	c.C742T	p.L248F	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120615460	120615460	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020754	exon12	c.C1994A	p.S665Y	.	.	.
TMEM39A	55254	broad.mit.edu	36	3	120663563	120663563	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018266	exon2	c.G49A	p.A17T	.	.	.
C3orf15	89876	broad.mit.edu	36	3	120940801	120940801	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033364	exon12	c.G1471T	p.E491X	.	.	.
C3orf15	89876	broad.mit.edu	36	3	120945718	120945718	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033364	exon14	c.C1887T	p.D629D	.	.	.
GSK3B	2932	broad.mit.edu	36	3	121077958	121077958	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002093	exon8	c.T901C	p.W301R	.	.	.
GSK3B	2932	broad.mit.edu	36	3	121203765	121203765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002093	exon2	c.G100A	p.G34S	.	.	.
GPR156	165829	broad.mit.edu	36	3	121368724	121368724	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168271	exon9	c.G2278T	p.E760X	.	.	.
GPR156	165829	broad.mit.edu	36	3	121369882	121369882	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168271	exon9	c.A1120G	p.N374D	.	.	.
GPR156	165829	broad.mit.edu	36	3	121445245	121445245	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168271	exon2	c.T165G	p.T55T	.	.	.
FSTL1	11167	broad.mit.edu	36	3	121613391	121613391	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007085	exon4	c.G298T	p.E100X	.	.	.
SYN2	6854	broad.mit.edu	36	3	12162197	12162197	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133625	exon5	c.C543T	p.F181F	.	.	.
SYN2	6854	broad.mit.edu	36	3	12199872	12199872	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133625	exon12	c.G1366A	p.G456R	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122359065	122359065	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014980	exon9	c.C778A	p.H260N	.	.	.
POLQ	10721	broad.mit.edu	36	3	122691889	122691889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199420	exon16	c.G2579A	p.R860Q	.	.	.
ARGFX	503582	broad.mit.edu	36	3	122787780	122787780	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012659	exon5	c.G591T	p.E197D	.	.	.
FBXO40	51725	broad.mit.edu	36	3	122824142	122824142	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016298	exon3	c.A1176C	p.K392N	.	.	.
HCLS1	3059	broad.mit.edu	36	3	122858865	122858865	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005335	exon3	c.C109T	p.R37X	.	.	.
GOLGB1	2804	broad.mit.edu	36	3	122892356	122892356	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004487	exon14	c.G8530T	p.E2844X	.	.	.
IQCB1	9657	broad.mit.edu	36	3	123027678	123027678	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023571	exon5	c.G303T	p.E101D	.	.	.
EAF2	55840	broad.mit.edu	36	3	123058686	123058686	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018456	exon4	c.C477T	p.I159I	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123195126	123195126	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199799	exon7	c.C1160A	p.S387Y	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123206805	123206805	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199799	exon3	c.C355T	p.Q119X	.	.	.
CASR	846	broad.mit.edu	36	3	123485498	123485498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000388	exon7	c.C2007T	p.I669I	.	.	.
CASR	846	broad.mit.edu	36	3	123486272	123486272	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000388	exon7	c.C2781T	p.P927P	.	.	.
WDR5B	54554	broad.mit.edu	36	3	123616375	123616375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019069	exon1	c.G691A	p.D231N	.	.	.
PARP9	83666	broad.mit.edu	36	3	123752156	123752156	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146103	exon6	c.T1291G	p.F431V	.	.	.
PARP9	83666	broad.mit.edu	36	3	123753979	123753979	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146103	exon5	c.G1083T	p.W361C	.	.	.
DTX3L	151636	broad.mit.edu	36	3	123770668	123770668	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138287	exon3	c.G1042T	p.D348Y	.	.	.
PARP15	165631	broad.mit.edu	36	3	123836625	123836625	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152615	exon7	c.G939T	p.K313N	.	.	.
SEMA5B	54437	broad.mit.edu	36	3	124115407	124115407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031702	exon15	c.G2120A	p.S707N	.	.	.
SEC22A	26984	broad.mit.edu	36	3	124410866	124410866	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012430	exon2	c.A112T	p.K38X	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1244521	1244521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon4	c.G202A	p.D68N	.	.	.
MYLK	4638	broad.mit.edu	36	3	124850588	124850588	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053027	exon26	c.C4335T	p.P1445P	.	.	.
CCDC14	64770	broad.mit.edu	36	3	125150288	125150288	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022757	exon6	c.A645G	p.L215L	.	.	.
TSEN2	80746	broad.mit.edu	36	3	12519851	12519851	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025265	exon5	c.G399A	p.T133T	.	.	.
UMPS	7372	broad.mit.edu	36	3	125936668	125936668	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000373	exon2	c.C195T	p.G65G	.	.	.
ITGB5	3693	broad.mit.edu	36	3	125965955	125965955	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002213	exon14	c.C2277T	p.S759S	.	.	.
MUC13	56667	broad.mit.edu	36	3	126113653	126113653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033049	exon9	c.G1237A	p.D413N	.	.	.
HEG1	57493	broad.mit.edu	36	3	126230820	126230820	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020733	exon2	c.C519T	p.S173S	.	.	.
ALG1L	200810	broad.mit.edu	36	3	127131069	127131069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001195223	exon7	c.G440A	p.G147D	.	.	.
ALDH1L1	10840	broad.mit.edu	36	3	127325923	127325923	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012190	exon16	c.G1862A	p.G621D	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127621652	127621652	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182628	exon11	c.G972T	p.K324N	.	.	.
CHST13	166012	broad.mit.edu	36	3	127737875	127737875	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152889	exon2	c.G169T	p.D57Y	.	.	.
TXNRD3IT1	645840	broad.mit.edu	36	3	127773841	127773841	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039783	exon3	c.C236A	p.S79Y	.	.	.
CAND2	23066	broad.mit.edu	36	3	12833210	12833210	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012298	exon8	c.C1500A	p.S500S	.	.	.
CAND2	23066	broad.mit.edu	36	3	12844036	12844036	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012298	exon11	c.G2957T	p.G986V	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129124692	129124692	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207335	exon1	c.T98C	p.V33A	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129125659	129125659	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207335	exon1	c.T1065A	p.I355I	.	.	.
SEC61A1	29927	broad.mit.edu	36	3	129258334	129258334	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013336	exon5	c.A313G	p.T105A	.	.	.
EEFSEC	60678	broad.mit.edu	36	3	129448542	129448542	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021937	exon2	c.A490G	p.T164A	.	.	.
DNAJB8	165721	broad.mit.edu	36	3	129664659	129664659	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153330	exon3	c.G120T	p.E40D	.	.	.
C3orf27	23434	broad.mit.edu	36	3	129775006	129775006	+	Missense_Mutation	SNP	T	C	C	rs35833142	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007354	exon3	c.A257G	p.D86G	.	.	.
ACAD9	28976	broad.mit.edu	36	3	130086266	130086266	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014049	exon2	c.C231A	p.F77L	.	.	.
KIAA1257	57501	broad.mit.edu	36	3	130190421	130190421	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020741	exon3	c.A293G	p.E98G	.	.	.
C3orf25	90288	broad.mit.edu	36	3	130610308	130610308	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207307	exon6	c.G1119A	p.P373P	.	.	.
MBD4	8930	broad.mit.edu	36	3	130638784	130638784	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003925	exon3	c.T393C	p.N131N	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130769236	130769236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon21	c.G3968A	p.R1323H	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1312291	1312291	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon6	c.C461A	p.S154Y	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131772576	131772576	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon6	c.C2626A	p.L876I	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131909843	131909843	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon10	c.G2515A	p.E839K	.	.	.
PIK3R4	30849	broad.mit.edu	36	3	131919949	131919949	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014602	exon8	c.C2101A	p.P701T	.	.	.
NEK11	79858	broad.mit.edu	36	3	132370382	132370382	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024800	exon13	c.G1195T	p.G399X	.	.	.
CPNE4	131034	broad.mit.edu	36	3	132736751	132736751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130808	exon16	c.C1652A	p.S551Y	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133648984	133648984	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon4	c.G274A	p.E92K	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133700821	133700821	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon37	c.C4318T	p.L1440F	.	.	.
NPHP3	27031	broad.mit.edu	36	3	133894280	133894280	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153240	exon17	c.T2383G	p.S795A	.	.	.
NPHP3	27031	broad.mit.edu	36	3	133914737	133914737	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153240	exon6	c.T1041G	p.N347K	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1346531	1346531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon11	c.G1276A	p.D426N	.	.	.
TF	7018	broad.mit.edu	36	3	134950027	134950027	+	Missense_Mutation	SNP	G	A	A	rs41298293	byFrequency	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001063	exon2	c.G125A	p.R42H	.	.	.
SLCO2A1	6578	broad.mit.edu	36	3	135152812	135152812	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005630	exon6	c.C791A	p.S264Y	.	.	.
STAG1	10274	broad.mit.edu	36	3	137722861	137722861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005862	exon7	c.G560A	p.R187Q	.	.	.
CLDN18	51208	broad.mit.edu	36	3	139211902	139211902	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016369	exon1	c.C145T	p.L49F	.	.	.
DZIP1L	199221	broad.mit.edu	36	3	139296503	139296503	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170538	exon5	c.A599T	p.K200I	.	.	.
DBR1	51163	broad.mit.edu	36	3	139364101	139364101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016216	exon8	c.G955A	p.A319T	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139436568	139436568	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014154	exon8	c.G489A	p.G163G	.	.	.
CEP70	80321	broad.mit.edu	36	3	139772650	139772650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024491	exon5	c.G200A	p.R67K	.	.	.
PRR23B	389151	broad.mit.edu	36	3	140221718	140221718	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013650	exon1	c.C476T	p.A159V	.	.	.
COPB2	9276	broad.mit.edu	36	3	140576048	140576048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004766	exon7	c.C724T	p.P242S	.	.	.
RBP2	5948	broad.mit.edu	36	3	140663790	140663790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004164	exon2	c.C106T	p.R36C	.	.	.
ZBTB38	253461	broad.mit.edu	36	3	142645947	142645947	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080412	exon8	c.C2027A	p.S676Y	.	.	.
RASA2	5922	broad.mit.edu	36	3	142788223	142788223	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006506	exon19	c.G1872T	p.K624N	.	.	.
TFDP2	7029	broad.mit.edu	36	3	143175698	143175698	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178141	exon5	c.G254A	p.R85Q	.	.	.
XRN1	54464	broad.mit.edu	36	3	143622596	143622596	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019001	exon10	c.T1125G	p.G375G	.	.	.
XRN1	54464	broad.mit.edu	36	3	143628295	143628295	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019001	exon3	c.T387G	p.D129E	.	.	.
ATR	545	broad.mit.edu	36	3	143713838	143713838	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon27	c.G4806T	p.E1602D	.	.	.
ATR	545	broad.mit.edu	36	3	143764404	143764404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon4	c.G530A	p.R177Q	.	.	.
ATR	545	broad.mit.edu	36	3	143767674	143767674	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184	exon3	c.G271T	p.E91X	.	.	.
TRPC1	7220	broad.mit.edu	36	3	143992598	143992598	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003304	exon7	c.G1243T	p.D415Y	.	.	.
TRPC1	7220	broad.mit.edu	36	3	144005597	144005597	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003304	exon10	c.G1744T	p.E582X	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144031332	144031332	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013363	exon6	c.G757T	p.D253Y	.	.	.
PCOLCE2	26577	broad.mit.edu	36	3	144089303	144089303	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013363	exon2	c.T90G	p.V30V	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144470486	144470486	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173653	exon15	c.C1631A	p.S544Y	.	.	.
C3orf19	51244	broad.mit.edu	36	3	14684014	14684014	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016474	exon8	c.G804T	p.E268D	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14720904	14720904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184958	exon7	c.G569A	p.R190Q	.	.	.
PLSCR2	57047	broad.mit.edu	36	3	147649775	147649775	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020359	exon7	c.G553A	p.A185T	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14773952	14773952	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184958	exon13	c.C1645T	p.R549W	.	.	.
FGD5	152273	broad.mit.edu	36	3	14836811	14836811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152536	exon1	c.C1229T	p.A410V	.	.	.
FGD5	152273	broad.mit.edu	36	3	14837675	14837675	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152536	exon1	c.G2093T	p.R698I	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148591501	148591501	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168378	exon4	c.C1061T	p.S354F	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148591648	148591648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168378	exon4	c.C914T	p.S305L	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148610747	148610747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003412	exon1	c.C158T	p.S53L	.	.	.
ZIC1	7545	broad.mit.edu	36	3	148611560	148611560	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003412	exon1	c.G971T	p.R324M	.	.	.
FGD5	152273	broad.mit.edu	36	3	14914531	14914531	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152536	exon6	c.C2991T	p.F997F	.	.	.
AGTR1	185	broad.mit.edu	36	3	149942539	149942539	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000685	exon3	c.G1027T	p.D343Y	.	.	.
HLTF	6596	broad.mit.edu	36	3	150239545	150239545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139048	exon23	c.G2777A	p.R926Q	.	.	.
HLTF	6596	broad.mit.edu	36	3	150242046	150242046	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139048	exon20	c.C2297A	p.S766Y	.	.	.
COMMD2	51122	broad.mit.edu	36	3	150942159	150942159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016094	exon5	c.G439A	p.A147T	.	.	.
EIF2A	83939	broad.mit.edu	36	3	151772492	151772492	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032025	exon10	c.C869T	p.A290V	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151860377	151860377	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152394	exon14	c.G1984T	p.E662X	.	.	.
SIAH2	6478	broad.mit.edu	36	3	151942627	151942627	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005067	exon2	c.T966G	p.C322W	.	.	.
MED12L	116931	broad.mit.edu	36	3	152360546	152360546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon7	c.C1075T	p.P359S	.	.	.
GPR171	29909	broad.mit.edu	36	3	152399700	152399700	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013308	exon3	c.A164C	p.N55T	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152646514	152646514	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178822	exon4	c.A3945C	p.Q1315H	.	.	.
MBNL1	4154	broad.mit.edu	36	3	153656037	153656037	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207295	exon5	c.G774T	p.M258I	.	.	.
METTL6	131965	broad.mit.edu	36	3	15427934	15427934	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152396	exon6	c.C688A	p.L230I	.	.	.
METTL6	131965	broad.mit.edu	36	3	15430577	15430577	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152396	exon5	c.T628G	p.F210V	.	.	.
METTL6	131965	broad.mit.edu	36	3	15441514	15441514	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152396	exon3	c.C312A	p.I104I	.	.	.
METTL6	131965	broad.mit.edu	36	3	15442855	15442855	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152396	exon2	c.C168A	p.F56L	.	.	.
C3orf79	152118	broad.mit.edu	36	3	154685159	154685159	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101337	exon1	c.C124A	p.L42I	.	.	.
C3orf79	152118	broad.mit.edu	36	3	154686554	154686554	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101337	exon2	c.G193T	p.D65Y	.	.	.
COLQ	8292	broad.mit.edu	36	3	15495864	15495864	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080539	exon3	c.A249G	p.G83G	.	.	.
ARHGEF26	26084	broad.mit.edu	36	3	155455878	155455878	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015595	exon15	c.G2542T	p.G848X	.	.	.
GPR149	344758	broad.mit.edu	36	3	155629574	155629574	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001038705	exon1	c.C525T	p.F175F	.	.	.
MME	4311	broad.mit.edu	36	3	156342749	156342749	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000902	exon12	c.T1124G	p.F375C	.	.	.
PLCH1	23007	broad.mit.edu	36	3	156691294	156691294	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130960	exon18	c.G2329T	p.D777Y	.	.	.
ANKRD28	23243	broad.mit.edu	36	3	15686949	15686949	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015199	exon28	c.T2994G	p.N998K	.	.	.
SLC33A1	9197	broad.mit.edu	36	3	157043032	157043032	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004733	exon2	c.C846T	p.N282N	.	.	.
GMPS	8833	broad.mit.edu	36	3	157111342	157111342	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003875	exon6	c.G694T	p.E232X	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157714855	157714855	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172159	exon9	c.C613T	p.R205X	.	.	.
TIPARP	25976	broad.mit.edu	36	3	157896478	157896478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015508	exon4	c.G1217A	p.R406H	.	.	.
LEKR1	389170	broad.mit.edu	36	3	158228638	158228638	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004316	exon12	c.C1421A	p.T474N	.	.	.
CCNL1	57018	broad.mit.edu	36	3	158350637	158350637	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020307	exon7	c.C790T	p.R264C	.	.	.
CCNL1	57018	broad.mit.edu	36	3	158353621	158353621	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020307	exon4	c.C507T	p.I169I	.	.	.
VEPH1	79674	broad.mit.edu	36	3	158628814	158628814	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167911	exon5	c.A687T	p.K229N	.	.	.
GFM1	85476	broad.mit.edu	36	3	159852686	159852686	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024996	exon6	c.A797G	p.E266G	.	.	.
SCHIP1	29970	broad.mit.edu	36	3	161066753	161066753	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197108	exon2	c.C171A	p.S57R	.	.	.
SMC4	10051	broad.mit.edu	36	3	161604939	161604939	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002800	exon5	c.C640T	p.R214X	.	.	.
SMC4	10051	broad.mit.edu	36	3	161631112	161631112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002800	exon19	c.C2827T	p.R943C	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16191754	16191754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054110	exon1	c.C92T	p.A31V	.	.	.
NMD3	51068	broad.mit.edu	36	3	162438645	162438645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015938	exon8	c.G628A	p.E210K	.	.	.
OTOL1	131149	broad.mit.edu	36	3	162699724	162699724	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080440	exon2	c.G436T	p.G146C	.	.	.
DPH3	285381	broad.mit.edu	36	3	16280675	16280675	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206831	exon2	c.T174A	p.I58I	.	.	.
DPH3	285381	broad.mit.edu	36	3	16281319	16281319	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001047434	exon1	c.C69A	p.F23L	.	.	.
DAZL	1618	broad.mit.edu	36	3	16611045	16611045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001351	exon8	c.C620T	p.P207L	.	.	.
SI	6476	broad.mit.edu	36	3	166197097	166197097	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon40	c.G4612T	p.E1538X	.	.	.
SI	6476	broad.mit.edu	36	3	166259739	166259739	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001041	exon11	c.G1189T	p.D397Y	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166390420	166390420	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014926	exon2	c.C893T	p.S298L	.	.	.
SLITRK3	22865	broad.mit.edu	36	3	166391296	166391296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014926	exon2	c.C17T	p.A6V	.	.	.
ZBBX	79740	broad.mit.edu	36	3	168498879	168498879	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024687	exon18	c.G1787T	p.R596I	.	.	.
WDR49	151790	broad.mit.edu	36	3	168729660	168729660	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178824	exon10	c.G1224T	p.K408N	.	.	.
GOLIM4	27333	broad.mit.edu	36	3	169210861	169210861	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014498	exon16	c.C1981T	p.R661X	.	.	.
GOLIM4	27333	broad.mit.edu	36	3	169243945	169243945	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014498	exon5	c.G433T	p.D145Y	.	.	.
MECOM	2122	broad.mit.edu	36	3	170316564	170316564	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164000	exon7	c.C1226T	p.S409L	.	.	.
MECOM	2122	broad.mit.edu	36	3	170316904	170316904	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164000	exon7	c.G886A	p.A296T	.	.	.
ARPM1	84517	broad.mit.edu	36	3	170968067	170968067	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032487	exon2	c.C966T	p.T322T	.	.	.
LRRC34	151827	broad.mit.edu	36	3	171004545	171004545	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172779	exon6	c.A647G	p.D216G	.	.	.
LRRIQ4	344657	broad.mit.edu	36	3	171029289	171029289	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080460	exon2	c.A1069C	p.T357P	.	.	.
LRRIQ4	344657	broad.mit.edu	36	3	171038011	171038011	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080460	exon5	c.C1581T	p.F527F	.	.	.
SAMD7	344658	broad.mit.edu	36	3	171127283	171127283	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182610	exon6	c.G539T	p.R180I	.	.	.
SAMD7	344658	broad.mit.edu	36	3	171127464	171127464	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182610	exon6	c.G720A	p.T240T	.	.	.
PRKCI	5584	broad.mit.edu	36	3	171480835	171480835	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002740	exon9	c.C832T	p.R278C	.	.	.
RPL22L1	200916	broad.mit.edu	36	3	172066919	172066919	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099645	exon4	c.G313A	p.E105K	.	.	.
TNIK	23043	broad.mit.edu	36	3	172264429	172264429	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161563	exon32	c.C3853T	p.R1285X	.	.	.
TNIK	23043	broad.mit.edu	36	3	172284750	172284750	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161563	exon25	c.G2892T	p.K964N	.	.	.
TNIK	23043	broad.mit.edu	36	3	172367584	172367584	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161563	exon10	c.G943T	p.E315X	.	.	.
SPATA16	83893	broad.mit.edu	36	3	174317808	174317808	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031955	exon2	c.C408T	p.R136R	.	.	.
NLGN1	22871	broad.mit.edu	36	3	174805465	174805465	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014932	exon3	c.A383C	p.E128A	.	.	.
TBL1XR1	79718	broad.mit.edu	36	3	178251009	178251009	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024665	exon6	c.G511A	p.E171K	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180425217	180425217	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon16	c.G2330T	p.R777M	.	.	.
MRPL47	57129	broad.mit.edu	36	3	180803180	180803180	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020409	exon2	c.A198C	p.E66D	.	.	.
USP13	8975	broad.mit.edu	36	3	180890725	180890725	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003940	exon3	c.G297T	p.K99N	.	.	.
TTC14	151613	broad.mit.edu	36	3	181803764	181803764	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133462	exon3	c.G445T	p.G149X	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181847677	181847677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon11	c.G1411A	p.E471K	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181860032	181860032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon6	c.C640T	p.R214C	.	.	.
SATB1	6304	broad.mit.edu	36	3	18411066	18411066	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002971	exon7	c.G1098A	p.S366S	.	.	.
MCCC1	56922	broad.mit.edu	36	3	184239612	184239612	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020166	exon12	c.G1273A	p.E425K	.	.	.
KLHL6	89857	broad.mit.edu	36	3	184700302	184700302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130446	exon4	c.C917T	p.S306L	.	.	.
YEATS2	55689	broad.mit.edu	36	3	184922506	184922506	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018023	exon5	c.C425A	p.S142Y	.	.	.
YEATS2	55689	broad.mit.edu	36	3	185004576	185004576	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018023	exon27	c.C3690T	p.C1230C	.	.	.
PARL	55486	broad.mit.edu	36	3	185030167	185030167	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018622	exon10	c.A1053G	p.E351E	.	.	.
HTR3D	200909	broad.mit.edu	36	3	185238751	185238751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182537	exon4	c.G390T	p.K130N	.	.	.
HTR3C	170572	broad.mit.edu	36	3	185260820	185260820	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130770	exon9	c.C1330A	p.L444I	.	.	.
EIF2B5	8893	broad.mit.edu	36	3	185338456	185338456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003907	exon4	c.C583T	p.R195C	.	.	.
ABCF3	55324	broad.mit.edu	36	3	185389912	185389912	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018358	exon12	c.A1100G	p.E367G	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185523387	185523387	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194947	exon13	c.T1901C	p.M634T	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185527434	185527434	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194947	exon23	c.G3418T	p.E1140X	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185527820	185527820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194947	exon24	c.G3572A	p.R1191Q	.	.	.
THPO	7066	broad.mit.edu	36	3	185573499	185573499	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177598	exon6	c.C541A	p.L181I	.	.	.
CHRD	8646	broad.mit.edu	36	3	185585653	185585653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003741	exon14	c.C1751T	p.A584V	.	.	.
CHRD	8646	broad.mit.edu	36	3	185589444	185589444	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003741	exon22	c.C2779T	p.R927X	.	.	.
VPS8	23355	broad.mit.edu	36	3	186071249	186071249	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009921	exon20	c.G1696T	p.D566Y	.	.	.
EHHADH	1962	broad.mit.edu	36	3	186405105	186405105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166415	exon6	c.C415T	p.R139C	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186664119	186664119	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon8	c.C1366T	p.R456X	.	.	.
LIPH	200879	broad.mit.edu	36	3	186714901	186714901	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139248	exon8	c.A1085C	p.K362T	.	.	.
LIPH	200879	broad.mit.edu	36	3	186735421	186735421	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139248	exon2	c.A243G	p.T81T	.	.	.
SENP2	59343	broad.mit.edu	36	3	186815202	186815202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021627	exon11	c.G1090A	p.D364N	.	.	.
IGF2BP2	10644	broad.mit.edu	36	3	186849978	186849978	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006548	exon14	c.C1500A	p.N500K	.	.	.
ETV5	2119	broad.mit.edu	36	3	187305830	187305830	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004454	exon5	c.C190T	p.P64S	.	.	.
TBCCD1	55171	broad.mit.edu	36	3	187756998	187756998	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134415	exon4	c.C753A	p.F251L	.	.	.
HRG	3273	broad.mit.edu	36	3	187877600	187877600	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000412	exon7	c.C812A	p.S271Y	.	.	.
HRG	3273	broad.mit.edu	36	3	187877772	187877772	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000412	exon7	c.A984G	p.Q328Q	.	.	.
KNG1	3827	broad.mit.edu	36	3	187942776	187942776	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102416	exon10	c.G1897T	p.E633X	.	.	.
RFC4	5984	broad.mit.edu	36	3	187995177	187995177	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181573	exon5	c.A374C	p.N125T	.	.	.
MASP1	5648	broad.mit.edu	36	3	188420680	188420680	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001879	exon16	c.G1973C	p.G658A	.	.	.
TP63	8626	broad.mit.edu	36	3	191094722	191094722	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114980	exon12	c.C1498T	p.R500X	.	.	.
LEPREL1	55214	broad.mit.edu	36	3	191173476	191173476	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134418	exon11	c.G1037T	p.S346I	.	.	.
CLDN16	10686	broad.mit.edu	36	3	191608896	191608896	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006580	exon4	c.A692C	p.K231T	.	.	.
FGF12	2257	broad.mit.edu	36	3	193608534	193608534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021032	exon1	c.G173A	p.R58H	.	.	.
C3orf59	151963	broad.mit.edu	36	3	193999656	193999656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178496	exon2	c.G689A	p.R230H	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194514519	194514519	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198505	exon19	c.G2316T	p.K772N	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194663285	194663285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032279	exon13	c.G1483A	p.G495S	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194665490	194665490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032279	exon12	c.G1394A	p.G465D	.	.	.
ATP13A4	84239	broad.mit.edu	36	3	194755232	194755232	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032279	exon1	c.G51T	p.E17D	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19526883	19526883	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144633	exon12	c.T2065C	p.S689P	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19550148	19550148	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144633	exon16	c.G2877T	p.W959C	.	.	.
C3orf21	152002	broad.mit.edu	36	3	196358508	196358508	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152531	exon3	c.C744T	p.G248G	.	.	.
ACAP2	23527	broad.mit.edu	36	3	196583961	196583961	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012287	exon3	c.G191A	p.R64Q	.	.	.
MUC4	4585	broad.mit.edu	36	3	197001888	197001888	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018406	exon2	c.G958T	p.A320S	.	.	.
MUC4	4585	broad.mit.edu	36	3	197002645	197002645	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018406	exon2	c.T201C	p.N67N	.	.	.
TFRC	7037	broad.mit.edu	36	3	197263236	197263236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128148	exon19	c.G2257A	p.V753I	.	.	.
FBXO45	200933	broad.mit.edu	36	3	197795411	197795411	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105573	exon3	c.G686T	p.R229I	.	.	.
LRRC33	375387	broad.mit.edu	36	3	197872329	197872329	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198565	exon3	c.G1418T	p.G473V	.	.	.
PIGX	54965	broad.mit.edu	36	3	197933684	197933684	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166304	exon3	c.G178T	p.D60Y	.	.	.
SENP5	205564	broad.mit.edu	36	3	198097663	198097663	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152699	exon2	c.C1214A	p.S405Y	.	.	.
EFHB	151651	broad.mit.edu	36	3	19899197	19899197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon12	c.G2177A	p.R726Q	.	.	.
EFHB	151651	broad.mit.edu	36	3	19922150	19922150	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon6	c.G1384A	p.A462T	.	.	.
EFHB	151651	broad.mit.edu	36	3	19950380	19950380	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon1	c.G135A	p.E45E	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21437825	21437825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024697	exon8	c.G1073A	p.R358Q	.	.	.
UBE2E1	7324	broad.mit.edu	36	3	23907088	23907088	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182666	exon5	c.G518T	p.R173I	.	.	.
THRB	7068	broad.mit.edu	36	3	24139417	24139417	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000461	exon10	c.C1348A	p.L450I	.	.	.
RARB	5915	broad.mit.edu	36	3	25517700	25517700	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000965	exon3	c.G330T	p.Q110H	.	.	.
TOP2B	7155	broad.mit.edu	36	3	25637294	25637294	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001068	exon22	c.C2730G	p.N910K	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27402497	27402497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003615	exon23	c.C3355T	p.R1119C	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27426009	27426009	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003615	exon13	c.A1756C	p.I586L	.	.	.
SLC4A7	9497	broad.mit.edu	36	3	27453992	27453992	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003615	exon4	c.C292A	p.L98I	.	.	.
EOMES	8320	broad.mit.edu	36	3	27733828	27733828	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005442	exon6	c.T1798G	p.F600V	.	.	.
EOMES	8320	broad.mit.edu	36	3	27735260	27735260	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005442	exon4	c.C1287A	p.F429L	.	.	.
CMC1	152100	broad.mit.edu	36	3	28332884	28332884	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182523	exon3	c.G166T	p.E56X	.	.	.
ZCWPW2	152098	broad.mit.edu	36	3	28508626	28508626	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040432	exon5	c.A615C	p.K205N	.	.	.
CNTN4	152330	broad.mit.edu	36	3	2903808	2903808	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175607	exon9	c.T840A	p.L280L	.	.	.
RBMS3	27303	broad.mit.edu	36	3	29756264	29756264	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014483	exon5	c.C449A	p.S150Y	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3060370	3060370	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175607	exon22	c.G2793A	p.S931S	.	.	.
TGFBR2	7048	broad.mit.edu	36	3	30661250	30661250	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024847	exon3	c.C177T	p.N59N	.	.	.
TGFBR2	7048	broad.mit.edu	36	3	30704972	30704972	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024847	exon7	c.C1564T	p.R522X	 TGFBR2,large_intestine,NS,Substitution - Nonsense,0 	.	.
CNTN4	152330	broad.mit.edu	36	3	3072837	3072837	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175607	exon24	c.C3014T	p.S1005L	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3112061	3112061	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175728	exon8	c.G777T	p.E259D	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3114831	3114831	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175728	exon6	c.C511A	p.L171I	.	.	.
TRNT1	51095	broad.mit.edu	36	3	3154132	3154132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182916	exon3	c.G337A	p.A113T	.	.	.
STT3B	201595	broad.mit.edu	36	3	31641429	31641429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178862	exon12	c.G1747T	p.D583Y	.	.	.
TRNT1	51095	broad.mit.edu	36	3	3164273	3164273	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182916	exon7	c.G942A	p.K314K	.	.	.
OSBPL10	114884	broad.mit.edu	36	3	31700319	31700319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017784	exon8	c.G1537A	p.E513K	.	.	.
DYNC1LI1	51143	broad.mit.edu	36	3	32551110	32551110	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016141	exon7	c.G865T	p.E289X	.	.	.
CNOT10	25904	broad.mit.edu	36	3	32736634	32736634	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015442	exon8	c.A769C	p.S257R	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35808912	35808912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016300	exon19	c.C2067T	p.F689F	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35809012	35809012	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016300	exon19	c.A2167C	p.M723L	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36847841	36847841	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014831	exon21	c.G8105A	p.R2702H	.	.	.
TRANK1	9881	broad.mit.edu	36	3	36849438	36849438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014831	exon21	c.C6508T	p.R2170W	.	.	.
LRRFIP2	9209	broad.mit.edu	36	3	37082775	37082775	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006309	exon23	c.C1510T	p.R504X	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37343062	37343062	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172713	exon15	c.G4747T	p.E1583X	.	.	.
GOLGA4	2803	broad.mit.edu	36	3	37343979	37343979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172713	exon15	c.G5664T	p.Q1888H	.	.	.
PLCD1	5333	broad.mit.edu	36	3	38025039	38025039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006225	exon12	c.G1816A	p.A606T	.	.	.
PLCD1	5333	broad.mit.edu	36	3	38025852	38025852	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006225	exon10	c.C1521A	p.F507L	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38055955	38055955	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007337	exon1	c.C235T	p.L79L	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38128811	38128811	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007337	exon25	c.C3621T	p.G1207G	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38134473	38134473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007337	exon33	c.C4658T	p.A1553V	.	.	.
OXSR1	9943	broad.mit.edu	36	3	38266461	38266461	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005109	exon15	c.G1323A	p.R441R	.	.	.
ACVR2B	93	broad.mit.edu	36	3	38498776	38498776	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001106	exon9	c.G1158T	p.M386I	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38730508	38730508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon21	c.G3749A	p.R1250Q	.	.	.
SCN10A	6336	broad.mit.edu	36	3	38787796	38787796	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006514	exon4	c.G577T	p.D193Y	.	.	.
SCN11A	11280	broad.mit.edu	36	3	38863503	38863503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014139	exon26	c.G5062A	p.A1688T	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39134656	39134656	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145755	exon7	c.C809A	p.S270Y	.	.	.
CSRNP1	64651	broad.mit.edu	36	3	39160527	39160527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033027	exon5	c.G793A	p.A265T	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39203793	39203793	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194293	exon2	c.C2148T	p.I716I	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39204620	39204620	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194293	exon2	c.T1321C	p.F441L	.	.	.
CX3CR1	1524	broad.mit.edu	36	3	39282291	39282291	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171174	exon2	c.C810T	p.I270I	.	.	.
CCR8	1237	broad.mit.edu	36	3	39348946	39348946	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005201	exon2	c.C120A	p.V40V	.	.	.
MYRIP	25924	broad.mit.edu	36	3	39917346	39917346	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015460	exon2	c.A35C	p.D12A	.	.	.
ENTPD3	956	broad.mit.edu	36	3	40440439	40440439	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001248	exon10	c.A1334G	p.Q445R	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40503928	40503928	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145083	exon4	c.G791T	p.R264I	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40504012	40504012	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145083	exon4	c.G875A	p.R292Q	.	.	.
CHL1	10752	broad.mit.edu	36	3	406045	406045	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon20	c.G2358A	p.L786L	.	.	.
CHL1	10752	broad.mit.edu	36	3	411423	411423	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006614	exon24	c.A2962C	p.T988P	.	.	.
ULK4	54986	broad.mit.edu	36	3	41414616	41414616	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon35	c.C3636T	p.D1212D	.	.	.
ULK4	54986	broad.mit.edu	36	3	41698021	41698021	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon29	c.G2960A	p.R987Q	.	.	.
ULK4	54986	broad.mit.edu	36	3	41935013	41935013	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon7	c.A667C	p.S223R	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42219049	42219049	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042646	exon13	c.C1545A	p.F515L	.	.	.
CCK	885	broad.mit.edu	36	3	42274634	42274634	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174138	exon3	c.T308C	p.F103S	.	.	.
ZBTB47	92999	broad.mit.edu	36	3	42679554	42679554	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145166	exon4	c.C1668A	p.S556S	.	.	.
HHATL	57467	broad.mit.edu	36	3	42714085	42714085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020707	exon7	c.G784A	p.D262N	.	.	.
CYP8B1	1582	broad.mit.edu	36	3	42890957	42890957	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004391	exon1	c.C1356A	p.L452L	.	.	.
ZNF662	389114	broad.mit.edu	36	3	42930849	42930849	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134656	exon4	c.G358T	p.D120Y	.	.	.
ZNF662	389114	broad.mit.edu	36	3	42931278	42931278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134656	exon4	c.G787A	p.A263T	.	.	.
ZNF662	389114	broad.mit.edu	36	3	42931708	42931708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134656	exon4	c.G1217A	p.R406K	.	.	.
SNRK	54861	broad.mit.edu	36	3	43320164	43320164	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017719	exon3	c.G465A	p.K155K	.	.	.
ANO10	55129	broad.mit.edu	36	3	43577726	43577726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018075	exon9	c.G1466A	p.G489E	.	.	.
C3orf23	285343	broad.mit.edu	36	3	44416866	44416866	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173826	exon9	c.C901T	p.P301S	.	.	.
ZNF445	353274	broad.mit.edu	36	3	44466993	44466993	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181489	exon6	c.A770G	p.N257S	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587701	44587701	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018651	exon6	c.G2095A	p.A699T	.	.	.
ZNF197	10168	broad.mit.edu	36	3	44648641	44648641	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024855	exon4	c.G591T	p.E197D	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44737921	44737921	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134442	exon3	c.G608T	p.R203I	.	.	.
ZNF502	91392	broad.mit.edu	36	3	44738642	44738642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134442	exon3	c.C1329T	p.G443G	.	.	.
LZTFL1	54585	broad.mit.edu	36	3	45843919	45843919	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020347	exon9	c.C814T	p.R272X	.	.	.
CCR9	10803	broad.mit.edu	36	3	45918283	45918283	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006641	exon2	c.G963T	p.K321N	.	.	.
CCR9	10803	broad.mit.edu	36	3	45918344	45918344	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006641	exon2	c.A1024C	p.K342Q	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45971860	45971860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024513	exon14	c.G3829A	p.D1277N	.	.	.
CCR3	1232	broad.mit.edu	36	3	46282163	46282163	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178328	exon3	c.C573A	p.I191I	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4698091	4698091	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon26	c.C3123T	p.I1041I	.	.	.
SETD2	29072	broad.mit.edu	36	3	47138430	47138430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014159	exon3	c.C2700T	p.C900C	.	.	.
PTPN23	25930	broad.mit.edu	36	3	47421177	47421177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015466	exon3	c.G191A	p.G64D	.	.	.
MAP4	4134	broad.mit.edu	36	3	47933190	47933190	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134364	exon7	c.G1131T	p.K377N	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4796291	4796291	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon46	c.G6205A	p.A2069T	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4817276	4817276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon51	c.G6955A	p.A2319T	.	.	.
CDC25A	993	broad.mit.edu	36	3	48194466	48194466	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001789	exon7	c.G566T	p.R189I	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48602907	48602907	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000094	exon14	c.G1895A	p.S632N	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48606838	48606838	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000094	exon2	c.G233A	p.R78H	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48671663	48671663	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001407	exon1	c.G3409T	p.E1137X	.	.	.
PRKAR2A	5576	broad.mit.edu	36	3	48764136	48764136	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004157	exon11	c.C1101T	p.F367F	.	.	.
QRICH1	54870	broad.mit.edu	36	3	49056938	49056938	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198880	exon6	c.C1675A	p.L559I	.	.	.
USP19	10869	broad.mit.edu	36	3	49126721	49126721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199162	exon16	c.G2257A	p.V753I	.	.	.
USP19	10869	broad.mit.edu	36	3	49127228	49127228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199162	exon15	c.C2228T	p.S743L	.	.	.
CCDC71	64925	broad.mit.edu	36	3	49176381	49176381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022903	exon2	c.C265T	p.R89C	.	.	.
BSN	8927	broad.mit.edu	36	3	49667085	49667085	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon5	c.C5092A	p.L1698I	.	.	.
BSN	8927	broad.mit.edu	36	3	49667206	49667206	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon5	c.C5213T	p.S1738L	.	.	.
BSN	8927	broad.mit.edu	36	3	49673828	49673828	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon6	c.C9546T	p.G3182G	.	.	.
APEH	327	broad.mit.edu	36	3	49695675	49695675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001640	exon22	c.C2095T	p.L699F	.	.	.
RNF123	63891	broad.mit.edu	36	3	49725053	49725053	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022064	exon27	c.G2634T	p.K878N	.	.	.
IP6K1	9807	broad.mit.edu	36	3	49745394	49745394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153273	exon4	c.G450T	p.K150N	.	.	.
CDHR4	389118	broad.mit.edu	36	3	49811780	49811780	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007540	exon2	c.G144A	p.T48T	.	.	.
UBA7	7318	broad.mit.edu	36	3	49825503	49825503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003335	exon4	c.G463A	p.V155M	.	.	.
GNAT1	2779	broad.mit.edu	36	3	50207217	50207217	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000172	exon8	c.A878G	p.E293G	.	.	.
SEMA3B	7869	broad.mit.edu	36	3	50286015	50286015	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005914	exon9	c.T855C	p.R285R	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51362861	51362861	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon40	c.C4064T	p.S1355L	.	.	.
VPRBP	9730	broad.mit.edu	36	3	51472186	51472186	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014703	exon6	c.T359C	p.V120A	.	.	.
ARL8B	55207	broad.mit.edu	36	3	5189376	5189376	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018184	exon4	c.G323A	p.R108Q	.	.	.
POC1A	25886	broad.mit.edu	36	3	52131436	52131436	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161581	exon9	c.T866G	p.L289R	.	.	.
ALAS1	211	broad.mit.edu	36	3	52215013	52215013	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000688	exon7	c.C919T	p.L307F	.	.	.
ALAS1	211	broad.mit.edu	36	3	52217142	52217142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000688	exon9	c.C1169T	p.A390V	.	.	.
TLR9	54106	broad.mit.edu	36	3	52232725	52232725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017442	exon2	c.G647A	p.R216H	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52355786	52355786	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon11	c.G1915T	p.D639Y	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52364074	52364074	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon21	c.G3656A	p.R1219H	.	.	.
BAP1	8314	broad.mit.edu	36	3	52414856	52414856	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004656	exon10	c.A896G	p.N299S	.	.	.
PHF7	51533	broad.mit.edu	36	3	52430763	52430763	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016483	exon8	c.A633C	p.K211N	.	.	.
GLT8D1	55830	broad.mit.edu	36	3	52704601	52704601	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152932	exon8	c.C688T	p.R230C	.	.	.
NEK4	6787	broad.mit.edu	36	3	52761220	52761220	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193533	exon6	c.G869A	p.S290N	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52790999	52790999	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166434	exon5	c.C265A	p.H89N	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52921655	52921655	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005158	exon17	c.C1669T	p.R557W	.	.	.
SFMBT1	51460	broad.mit.edu	36	3	52937316	52937316	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005158	exon10	c.G979A	p.A327T	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53814073	53814073	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128839	exon43	c.G5537T	p.R1846I	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	54636884	54636884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018398	exon10	c.G994A	p.A332T	.	.	.
CACNA2D3	55799	broad.mit.edu	36	3	55027325	55027325	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018398	exon35	c.C2928T	p.F976F	.	.	.
WNT5A	7474	broad.mit.edu	36	3	55488467	55488467	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003392	exon3	c.A306C	p.K102N	.	.	.
ERC2	26059	broad.mit.edu	36	3	56089944	56089944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015576	exon7	c.C1582T	p.R528C	.	.	.
C3orf63	23272	broad.mit.edu	36	3	56642192	56642192	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112736	exon18	c.A3667C	p.I1223L	.	.	.
ARHGEF3	50650	broad.mit.edu	36	3	56754308	56754308	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128615	exon10	c.A931C	p.N311H	.	.	.
DNAH12	201625	broad.mit.edu	36	3	57463186	57463186	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178504	exon10	c.G1147T	p.E383X	.	.	.
SLMAP	7871	broad.mit.edu	36	3	57792202	57792202	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007159	exon2	c.G251T	p.R84I	.	.	.
FLNB	2317	broad.mit.edu	36	3	58042411	58042411	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001457	exon4	c.G655T	p.E219X	.	.	.
FLNB	2317	broad.mit.edu	36	3	58056924	58056924	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001457	exon6	c.A923G	p.D308G	.	.	.
FLNB	2317	broad.mit.edu	36	3	58120326	58120326	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001457	exon42	c.G6894A	p.S2298S	.	.	.
PTPRG	5793	broad.mit.edu	36	3	62179656	62179656	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002841	exon13	c.C2247T	p.F749F	.	.	.
CADPS	8618	broad.mit.edu	36	3	62360229	62360229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003716	exon30	c.C3954T	p.I1318I	.	.	.
CADPS	8618	broad.mit.edu	36	3	62476798	62476798	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003716	exon16	c.C2557A	p.L853I	.	.	.
CADPS	8618	broad.mit.edu	36	3	62545958	62545958	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003716	exon8	c.G1519T	p.D507Y	.	.	.
CADPS	8618	broad.mit.edu	36	3	62611761	62611761	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003716	exon5	c.T1004C	p.M335T	.	.	.
PRICKLE2	166336	broad.mit.edu	36	3	64107850	64107850	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198859	exon7	c.C1356T	p.S452S	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64574185	64574185	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182920	exon22	c.T3230C	p.V1077A	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64583162	64583162	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182920	exon17	c.C2530T	p.R844C	.	.	.
LRIG1	26018	broad.mit.edu	36	3	66513937	66513937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015541	exon18	c.G2809A	p.E937K	.	.	.
TMF1	7110	broad.mit.edu	36	3	69175605	69175605	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007114	exon4	c.G1564A	p.D522N	.	.	.
MITF	4286	broad.mit.edu	36	3	70071005	70071005	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198178	exon3	c.C160T	p.R54X	.	.	.
FOXP1	27086	broad.mit.edu	36	3	71108796	71108796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032682	exon17	c.G1516A	p.A506T	.	.	.
RYBP	23429	broad.mit.edu	36	3	72510366	72510366	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012234	exon4	c.T517C	p.S173P	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72973002	72973002	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018130	exon4	c.G370T	p.E124X	.	.	.
GXYLT2	727936	broad.mit.edu	36	3	73086950	73086950	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080393	exon4	c.G612T	p.K204N	.	.	.
PPP4R2	151987	broad.mit.edu	36	3	73195539	73195539	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174907	exon6	c.C445T	p.R149X	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77612958	77612958	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon3	c.A506G	p.D169G	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77706443	77706443	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002942	exon14	c.C2075T	p.P692L	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77749497	77749497	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon21	c.G3378A	p.W1126X	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77776559	77776559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon24	c.C3890T	p.A1297V	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78817713	78817713	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon10	c.T1215G	p.F405L	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78849241	78849241	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon7	c.T791G	p.F264C	.	.	.
GBE1	2632	broad.mit.edu	36	3	81837395	81837395	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000158	exon2	c.A203C	p.K68T	.	.	.
LMCD1	29995	broad.mit.edu	36	3	8582327	8582327	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014583	exon5	c.C933T	p.C311C	.	.	.
POU1F1	5449	broad.mit.edu	36	3	87391742	87391742	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122757	exon6	c.T946C	p.C316R	.	.	.
POU1F1	5449	broad.mit.edu	36	3	87393128	87393128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122757	exon5	c.G728A	p.R243Q	.	.	.
ZNF654	55279	broad.mit.edu	36	3	88271463	88271463	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018293	exon1	c.G313T	p.E105X	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89341828	89341828	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon3	c.G282T	p.K94N	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89342167	89342167	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon3	c.G621A	p.K207K	.	.	.
SRGAP3	9901	broad.mit.edu	36	3	9074962	9074962	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014850	exon7	c.C996T	p.F332F	.	.	.
THUMPD3	25917	broad.mit.edu	36	3	9397292	9397292	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015453	exon7	c.A1114T	p.I372F	.	.	.
THUMPD3	25917	broad.mit.edu	36	3	9401367	9401367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015453	exon10	c.G1519A	p.E507K	.	.	.
PROS1	5627	broad.mit.edu	36	3	95107432	95107432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000313	exon6	c.G487A	p.D163N	.	.	.
DHFRL1	200895	broad.mit.edu	36	3	95262902	95262902	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195643	exon2	c.G144T	p.Q48H	.	.	.
BRPF1	7862	broad.mit.edu	36	3	9760550	9760550	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004634	exon8	c.C2582T	p.A861V	.	.	.
EPHA6	285220	broad.mit.edu	36	3	98685570	98685570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080448	exon10	c.G2177A	p.R726H	.	.	.
MINA	84864	broad.mit.edu	36	3	99147404	99147404	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042533	exon9	c.G1167T	p.K389N	.	.	.
OR5AC2	81050	broad.mit.edu	36	3	99289439	99289439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054106	exon1	c.G733A	p.A245T	.	.	.
IL17RC	84818	broad.mit.edu	36	3	9937199	9937199	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153460	exon6	c.G490A	p.E164K	.	.	.
OR5H2	79310	broad.mit.edu	36	3	99485260	99485260	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005482	exon1	c.C839A	p.S280Y	.	.	.
OR5K4	403278	broad.mit.edu	36	3	99555693	99555693	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005517	exon1	c.T306G	p.Y102X	.	.	.
OR5K3	403277	broad.mit.edu	36	3	99593014	99593014	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005516	exon1	c.T815G	p.V272G	.	.	.
GPR15	2838	broad.mit.edu	36	3	99733727	99733727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005290	exon1	c.C160A	p.L54I	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10078823	10078823	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TBC1D23	55773	broad.mit.edu	36	3	101517727	101517727	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ALCAM	214	broad.mit.edu	36	3	106746881	106746881	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GRAMD1C	54762	broad.mit.edu	36	3	115071137	115071137	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARHGAP31	57514	broad.mit.edu	36	3	120603348	120603348	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C3orf1	51300	broad.mit.edu	36	3	120702403	120702403	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122456656	122456656	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POLQ	10721	broad.mit.edu	36	3	122637647	122637647	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC15A2	6565	broad.mit.edu	36	3	123125922	123125922	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KPNA1	3836	broad.mit.edu	36	3	123697967	123697967	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SEC22A	26984	broad.mit.edu	36	3	124425271	124425271	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYLK	4638	broad.mit.edu	36	3	124861222	124861222	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KALRN	8997	broad.mit.edu	36	3	125658135	125658135	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ITGB5	3693	broad.mit.edu	36	3	126074982	126074982	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RAF1	5894	broad.mit.edu	36	3	12625428	12625428	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ACPP	55	broad.mit.edu	36	3	133539096	133539096	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SR140	23350	broad.mit.edu	36	3	144224201	144224201	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC6A6	6533	broad.mit.edu	36	3	14488832	14488832	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZIC4	84107	broad.mit.edu	36	3	148596319	148596319	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CPB1	1360	broad.mit.edu	36	3	150045143	150045143	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CLRN1	7401	broad.mit.edu	36	3	152128408	152128408	+	3'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MED12L	116931	broad.mit.edu	36	3	152557682	152557682	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MBNL1	4154	broad.mit.edu	36	3	153658603	153658603	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VEPH1	79674	broad.mit.edu	36	3	158466155	158466155	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RSRC1	51319	broad.mit.edu	36	3	159744654	159744654	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GALNTL2	117248	broad.mit.edu	36	3	16217339	16217339	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PLD1	5337	broad.mit.edu	36	3	172887161	172887161	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PEX5L	51555	broad.mit.edu	36	3	181020331	181020331	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DCUN1D1	54165	broad.mit.edu	36	3	184161846	184161846	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MCF2L2	23101	broad.mit.edu	36	3	184380542	184380542	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HTR3C	170572	broad.mit.edu	36	3	185259075	185259075	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DVL3	1857	broad.mit.edu	36	3	185364742	185364742	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185528196	185528196	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
VPS8	23355	broad.mit.edu	36	3	186167203	186167203	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SENP2	59343	broad.mit.edu	36	3	186830256	186830256	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RFC4	5984	broad.mit.edu	36	3	187990739	187990739	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SST	6750	broad.mit.edu	36	3	188870776	188870776	+	5'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194501682	194501682	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194564585	194564585	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TFRC	7037	broad.mit.edu	36	3	197274116	197274116	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EFHB	151651	broad.mit.edu	36	3	19950519	19950519	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KAT2B	8850	broad.mit.edu	36	3	20116456	20116456	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OXSM	54995	broad.mit.edu	36	3	25810998	25810998	+	3'UTR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NEK10	152110	broad.mit.edu	36	3	27127786	27127786	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RBMS3	27303	broad.mit.edu	36	3	30004630	30004630	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RBMS3	27303	broad.mit.edu	36	3	30007565	30007565	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UBP1	7342	broad.mit.edu	36	3	33425184	33425184	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ARPP21	10777	broad.mit.edu	36	3	35723586	35723586	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STAC	6769	broad.mit.edu	36	3	36522231	36522231	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
WDR48	57599	broad.mit.edu	36	3	39082395	39082395	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ZNF619	285267	broad.mit.edu	36	3	40504747	40504747	+	3'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NKTR	4820	broad.mit.edu	36	3	42634056	42634056	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C3orf23	285343	broad.mit.edu	36	3	44378018	44378018	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIF15	56992	broad.mit.edu	36	3	44842864	44842864	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SACM1L	22908	broad.mit.edu	36	3	45747789	45747789	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4701036	4701036	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SMARCC1	6599	broad.mit.edu	36	3	47754512	47754512	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48598505	48598505	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48663792	48663792	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DOCK3	1795	broad.mit.edu	36	3	50889929	50889929	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51272620	51272620	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IQCF2	389123	broad.mit.edu	36	3	51872430	51872430	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EDEM1	9695	broad.mit.edu	36	3	5230213	5230213	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CACNA1D	776	broad.mit.edu	36	3	53731548	53731548	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
WNT5A	7474	broad.mit.edu	36	3	55489988	55489988	+	Splice_Site	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM116A	201627	broad.mit.edu	36	3	57619954	57619954	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FLNB	2317	broad.mit.edu	36	3	58129431	58129431	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PDHB	5162	broad.mit.edu	36	3	58388800	58388800	+	3'UTR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ADAMTS9	56999	broad.mit.edu	36	3	64594606	64594606	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBA3	9039	broad.mit.edu	36	3	69187372	69187372	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FOXP1	27086	broad.mit.edu	36	3	71132909	71132909	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SHQ1	55164	broad.mit.edu	36	3	72949237	72949237	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78777981	78777981	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CHMP2B	25978	broad.mit.edu	36	3	87385237	87385237	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99078968	99078968	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GABRR3	200959	broad.mit.edu	36	3	99210582	99210582	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HAUS3	79441	broad.mit.edu	36	4	2203538	2203539	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024511	exon5	c.1726_1727insA	p.F576fs	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38791037	38791037	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015990	exon9	c.1829delT	p.L610fs	.	.	.
H2AFZ	3015	broad.mit.edu	36	4	101089695	101089695	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADH6	130	broad.mit.edu	36	4	100350388	100350388	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000672	exon5	c.C441A	p.F147L	.	.	.
ADH6	130	broad.mit.edu	36	4	100353791	100353791	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000672	exon3	c.A257C	p.K86T	.	.	.
ADH1C	126	broad.mit.edu	36	4	100485430	100485430	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000669	exon4	c.G276A	p.P92P	.	.	.
ADH7	131	broad.mit.edu	36	4	100569722	100569722	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000673	exon2	c.T146G	p.V49G	.	.	.
RG9MTD2	93587	broad.mit.edu	36	4	100689281	100689281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134665	exon8	c.C1007T	p.S336F	.	.	.
RG9MTD2	93587	broad.mit.edu	36	4	100698306	100698306	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134665	exon3	c.C271A	p.R91S	.	.	.
DAPP1	27071	broad.mit.edu	36	4	100980476	100980476	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014395	exon3	c.G232T	p.D78Y	.	.	.
DNAJB14	79982	broad.mit.edu	36	4	101041225	101041225	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031723	exon8	c.C1123A	p.L375I	.	.	.
CLNK	116449	broad.mit.edu	36	4	10118702	10118702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052964	exon17	c.G963T	p.E321D	.	.	.
SLC39A8	64116	broad.mit.edu	36	4	103403241	103403241	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135146	exon9	c.G1366T	p.E456X	.	.	.
NFKB1	4790	broad.mit.edu	36	4	103670089	103670089	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165412	exon3	c.G106A	p.A36T	.	.	.
CENPE	1062	broad.mit.edu	36	4	104249418	104249418	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon48	c.C8002A	p.L2668I	.	.	.
CENPE	1062	broad.mit.edu	36	4	104276962	104276962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon40	c.C6307T	p.L2103F	.	.	.
CENPE	1062	broad.mit.edu	36	4	104299641	104299641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001813	exon22	c.C2576T	p.S859L	.	.	.
TACR3	6870	broad.mit.edu	36	4	104799008	104799008	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001059	exon2	c.T550G	p.Y184D	.	.	.
RNF212	285498	broad.mit.edu	36	4	1063468	1063468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194439	exon8	c.C473T	p.S158L	.	.	.
NPNT	255743	broad.mit.edu	36	4	107081167	107081167	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184693	exon8	c.C778T	p.R260X	.	.	.
TBCK	93627	broad.mit.edu	36	4	107373600	107373600	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163437	exon17	c.T1466G	p.F489C	.	.	.
CYP2U1	113612	broad.mit.edu	36	4	109086007	109086007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183075	exon2	c.C923A	p.S308Y	.	.	.
OSTC	58505	broad.mit.edu	36	4	109798204	109798204	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021227	exon3	c.T383C	p.V128A	.	.	.
COL25A1	84570	broad.mit.edu	36	4	110000300	110000300	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198721	exon23	c.G1281A	p.E427E	.	.	.
HS3ST1	9957	broad.mit.edu	36	4	11009869	11009869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005114	exon2	c.G859A	p.E287K	.	.	.
CCDC109B	55013	broad.mit.edu	36	4	110823310	110823310	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017918	exon5	c.T575G	p.I192S	.	.	.
CFI	3426	broad.mit.edu	36	4	110881691	110881691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000204	exon13	c.C1559T	p.A520V	.	.	.
RRH	10692	broad.mit.edu	36	4	110973840	110973840	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006583	exon2	c.C203T	p.A68V	.	.	.
EGF	1950	broad.mit.edu	36	4	111129302	111129302	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001963	exon18	c.A2722G	p.I908V	.	.	.
ENPEP	2028	broad.mit.edu	36	4	111629190	111629190	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001977	exon2	c.C689A	p.S230Y	.	.	.
ENPEP	2028	broad.mit.edu	36	4	111683430	111683430	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001977	exon12	c.C1882T	p.R628C	.	.	.
AP1AR	55435	broad.mit.edu	36	4	113401387	113401387	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128426	exon5	c.G202T	p.E68X	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113572418	113572418	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102406	exon11	c.G2266A	p.D756N	.	.	.
Unknown	0	broad.mit.edu	36	4	113728086	113728086	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018392	exon12	c.C3576A	p.V1192V	.	.	.
ANK2	287	broad.mit.edu	36	4	114495763	114495763	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.C6540T	p.L2180L	.	.	.
ANK2	287	broad.mit.edu	36	4	114496856	114496856	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.G7633T	p.E2545X	.	.	.
ANK2	287	broad.mit.edu	36	4	114501448	114501448	+	Missense_Mutation	SNP	C	T	T	rs72556376	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020977	exon38	c.C4447T	p.R1483W	.	.	.
ANK2	287	broad.mit.edu	36	4	114508397	114508397	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020977	exon41	c.C5004A	p.F1668L	.	.	.
ANK2	287	broad.mit.edu	36	4	114513981	114513981	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020977	exon44	c.A5531G	p.N1844S	.	.	.
TRAM1L1	133022	broad.mit.edu	36	4	118225209	118225209	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152402	exon1	c.G789T	p.V263V	.	.	.
TRAM1L1	133022	broad.mit.edu	36	4	118225743	118225743	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152402	exon1	c.C255A	p.F85L	.	.	.
NDST3	9348	broad.mit.edu	36	4	119278664	119278664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004784	exon5	c.G1232A	p.G411D	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119459014	119459014	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003619	exon5	c.G1117T	p.E373X	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119872068	119872068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon21	c.C2719T	p.R907C	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119946446	119946446	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon7	c.G913T	p.G305X	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119956257	119956257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon5	c.G470A	p.R157Q	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120167370	120167370	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon3	c.T398C	p.L133P	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120168032	120168032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon3	c.C1060T	p.R354W	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120171141	120171141	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon4	c.C1763T	p.T588M	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120172185	120172185	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon4	c.C2807A	p.A936D	.	.	.
MYOZ2	51778	broad.mit.edu	36	4	120291589	120291589	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016599	exon3	c.G191T	p.R64I	.	.	.
MYOZ2	51778	broad.mit.edu	36	4	120326654	120326654	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016599	exon6	c.G646T	p.D216Y	.	.	.
USP53	54532	broad.mit.edu	36	4	120407963	120407963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019050	exon12	c.G1013A	p.R338Q	.	.	.
FABP2	2169	broad.mit.edu	36	4	120461387	120461387	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000134	exon2	c.A126G	p.T42T	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120693180	120693180	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033437	exon9	c.A1213C	p.K405Q	.	.	.
CTBP1	1487	broad.mit.edu	36	4	1212001	1212001	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001328	exon3	c.C326T	p.S109L	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122177338	122177338	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024574	exon4	c.C1238A	p.P413H	.	.	.
C4orf31	79625	broad.mit.edu	36	4	122178163	122178163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024574	exon4	c.C413T	p.S138L	.	.	.
QRFPR	84109	broad.mit.edu	36	4	122481192	122481192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198179	exon2	c.C364T	p.P122S	.	.	.
BBS7	55212	broad.mit.edu	36	4	122988038	122988038	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176824	exon10	c.G1008T	p.Q336H	.	.	.
BBS7	55212	broad.mit.edu	36	4	122999767	122999767	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176824	exon5	c.G358T	p.D120Y	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123040269	123040269	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003305	exon9	c.T2276C	p.V759A	.	.	.
TRPC3	7222	broad.mit.edu	36	4	123043554	123043554	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003305	exon8	c.T2147G	p.F716C	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123411805	123411805	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon45	c.C7676T	p.S2559F	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123488252	123488252	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon74	c.C12997A	p.P4333T	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123502644	123502644	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015312	exon84	c.C14810A	p.S4937Y	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123536882	123536882	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159295	exon6	c.G570T	p.K190N	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123551883	123551883	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159295	exon8	c.A851C	p.K284T	.	.	.
IL21	59067	broad.mit.edu	36	4	123753491	123753491	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021803	exon4	c.G403T	p.E135X	.	.	.
BBS12	166379	broad.mit.edu	36	4	123883480	123883480	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152618	exon2	c.C983A	p.S328Y	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125809649	125809649	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.G3696A	p.K1232K	.	.	.
ANKRD50	57182	broad.mit.edu	36	4	125811700	125811700	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167882	exon3	c.G1645A	p.A549T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459351	126459351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G2335T	p.V779L	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459728	126459728	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G2712T	p.E904D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126461043	126461043	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G4027A	p.D1343N	.	.	.
FAT4	79633	broad.mit.edu	36	4	126547540	126547540	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon3	c.G5363A	p.R1788H	.	.	.
FAT4	79633	broad.mit.edu	36	4	126547620	126547620	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon3	c.C5443T	p.R1815C	.	.	.
FAT4	79633	broad.mit.edu	36	4	126555855	126555855	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon5	c.A6287C	p.K2096T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126556026	126556026	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon5	c.T6458A	p.I2153N	.	.	.
FAT4	79633	broad.mit.edu	36	4	126587122	126587122	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon8	c.C7418T	p.T2473I	.	.	.
FAT4	79633	broad.mit.edu	36	4	126590399	126590399	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.G8778T	p.E2926D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126590533	126590533	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.T8912C	p.I2971T	.	.	.
FAT4	79633	broad.mit.edu	36	4	126592270	126592270	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.G10649A	p.S3550N	.	.	.
INTU	27152	broad.mit.edu	36	4	128847097	128847097	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015693	exon12	c.T1794G	p.H598Q	.	.	.
HSPA4L	22824	broad.mit.edu	36	4	128967996	128967996	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014278	exon17	c.T2133C	p.L711L	.	.	.
PLK4	10733	broad.mit.edu	36	4	129022454	129022454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190799	exon2	c.C49A	p.L17M	.	.	.
LARP1B	55132	broad.mit.edu	36	4	129319168	129319168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018078	exon14	c.G1817A	p.R606Q	.	.	.
SCLT1	132320	broad.mit.edu	36	4	130093408	130093408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144643	exon14	c.C1184T	p.S395F	.	.	.
KIAA1530	57654	broad.mit.edu	36	4	1331968	1331968	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020894	exon2	c.A89G	p.K30R	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292338	134292338	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020815	exon1	c.C1593T	p.F531F	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292421	134292421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020815	exon1	c.C1676A	p.T559N	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134303858	134303858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon4	c.C3074T	p.T1025M	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138661782	138661782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon4	c.C3259T	p.P1087S	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138671880	138671880	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.G813A	p.T271T	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672011	138672011	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.G682T	p.G228C	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672111	138672111	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.G582T	p.K194N	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138672229	138672229	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.G464A	p.R155H	.	.	.
NAA15	80155	broad.mit.edu	36	4	140516987	140516987	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057175	exon16	c.G1966T	p.E656X	.	.	.
RNF150	57484	broad.mit.edu	36	4	142108450	142108450	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020724	exon2	c.T512A	p.I171N	.	.	.
INPP4B	8821	broad.mit.edu	36	4	143286544	143286544	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003866	exon19	c.A1619G	p.D540G	.	.	.
USP38	84640	broad.mit.edu	36	4	144355100	144355100	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032557	exon9	c.C2521T	p.L841L	.	.	.
GAB1	2549	broad.mit.edu	36	4	144579197	144579197	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207123	exon4	c.C1189T	p.R397X	.	.	.
SMARCA5	8467	broad.mit.edu	36	4	144693772	144693772	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003601	exon24	c.G3144T	p.K1048N	.	.	.
GYPE	2996	broad.mit.edu	36	4	145046093	145046093	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198682	exon1	c.C18A	p.I6I	.	.	.
HHIP	64399	broad.mit.edu	36	4	145854929	145854929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022475	exon9	c.A1526G	p.Y509C	.	.	.
HHIP	64399	broad.mit.edu	36	4	145859543	145859543	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022475	exon11	c.T1745G	p.I582S	.	.	.
ANAPC10	10393	broad.mit.edu	36	4	146136022	146136022	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014885	exon5	c.C511A	p.P171T	.	.	.
ANAPC10	10393	broad.mit.edu	36	4	146136091	146136091	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014885	exon5	c.G442A	p.G148R	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146278106	146278106	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102653	exon21	c.G3076T	p.V1026F	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146282095	146282095	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102653	exon19	c.A1774G	p.T592A	.	.	.
ZNF827	152485	broad.mit.edu	36	4	146919981	146919981	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178835	exon9	c.A2516G	p.H839R	.	.	.
ZNF827	152485	broad.mit.edu	36	4	147043154	147043154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178835	exon2	c.G707A	p.R236Q	.	.	.
TTC29	83894	broad.mit.edu	36	4	148049687	148049687	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031956	exon5	c.C341A	p.P114H	.	.	.
TTC29	83894	broad.mit.edu	36	4	148049833	148049833	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031956	exon5	c.G195T	p.K65N	.	.	.
PRMT10	90826	broad.mit.edu	36	4	148798519	148798519	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138364	exon8	c.G1204T	p.E402X	.	.	.
ARHGAP10	79658	broad.mit.edu	36	4	148987792	148987792	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024605	exon4	c.A353C	p.K118T	.	.	.
NR3C2	4306	broad.mit.edu	36	4	149254763	149254763	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166104	exon7	c.C2390A	p.S797Y	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15165819	15165819	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080522	exon21	c.C2513A	p.S838X	.	.	.
CC2D2A	57545	broad.mit.edu	36	4	15190767	15190767	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080522	exon31	c.C3850T	p.R1284C	.	.	.
LRBA	987	broad.mit.edu	36	4	151969142	151969142	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006726	exon30	c.A4811G	p.D1604G	.	.	.
BST1	683	broad.mit.edu	36	4	15318348	15318348	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004334	exon3	c.T432C	p.C144C	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153551974	153551974	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033632	exon2	c.G432A	p.T144T	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153910705	153910705	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145720	exon2	c.C902T	p.S301F	.	.	.
TIGD4	201798	broad.mit.edu	36	4	153911038	153911038	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145720	exon2	c.G569A	p.R190Q	.	.	.
FHDC1	85462	broad.mit.edu	36	4	154094821	154094821	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033393	exon3	c.C563A	p.S188Y	.	.	.
FHDC1	85462	broad.mit.edu	36	4	154101356	154101356	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033393	exon5	c.C760T	p.R254W	.	.	.
TRIM2	23321	broad.mit.edu	36	4	154456587	154456587	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015271	exon8	c.G1768A	p.D590N	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154743147	154743147	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon23	c.C2454A	p.F818L	.	.	.
RNF175	285533	broad.mit.edu	36	4	154853145	154853145	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173662	exon8	c.C798T	p.I266I	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155377108	155377108	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.G6781T	p.E2261X	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155377442	155377442	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.C6447A	p.F2149L	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155379847	155379847	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon24	c.G6052T	p.D2018Y	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155456486	155456486	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon15	c.G3759A	p.Q1253Q	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155461158	155461158	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon14	c.G3478T	p.D1160Y	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155463061	155463061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon13	c.G2683A	p.A895T	.	.	.
PLRG1	5356	broad.mit.edu	36	4	155688426	155688426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002669	exon3	c.G146A	p.R49H	.	.	.
FGB	2244	broad.mit.edu	36	4	155710243	155710243	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005141	exon7	c.G1086T	p.Q362H	.	.	.
FGA	2243	broad.mit.edu	36	4	155725352	155725352	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000508	exon6	c.T1975G	p.F659V	.	.	.
FGG	2266	broad.mit.edu	36	4	155747311	155747311	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021870	exon8	c.C1125T	p.Y375Y	.	.	.
FGG	2266	broad.mit.edu	36	4	155753163	155753163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021870	exon1	c.C49A	p.L17I	.	.	.
RBM46	166863	broad.mit.edu	36	4	155939662	155939662	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144979	exon4	c.A898G	p.S300G	.	.	.
RBM46	166863	broad.mit.edu	36	4	155939918	155939918	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144979	exon4	c.C1154A	p.S385Y	.	.	.
PROM1	8842	broad.mit.edu	36	4	15635938	15635938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145847	exon5	c.G578A	p.R193Q	.	.	.
PROM1	8842	broad.mit.edu	36	4	15644096	15644096	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145847	exon4	c.A411C	p.R137R	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851220	156851220	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon6	c.C453T	p.I151I	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851731	156851731	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon6	c.G964T	p.E322X	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156853813	156853813	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon7	c.C1200A	p.L400L	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156857882	156857882	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon8	c.C1694A	p.S565Y	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156870636	156870636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon10	c.C1876T	p.L626F	.	.	.
GUCY1B3	2983	broad.mit.edu	36	4	156945730	156945730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000857	exon13	c.G1735A	p.D579N	.	.	.
ACCN5	51802	broad.mit.edu	36	4	156992845	156992845	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017419	exon4	c.G659T	p.R220I	.	.	.
TDO2	6999	broad.mit.edu	36	4	157055008	157055008	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005651	exon8	c.G810T	p.E270D	.	.	.
PDGFC	56034	broad.mit.edu	36	4	157908531	157908531	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016205	exon5	c.C765A	p.F255L	.	.	.
GLRB	2743	broad.mit.edu	36	4	158311326	158311326	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166060	exon10	c.T1490G	p.L497X	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158481923	158481923	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083619	exon12	c.C1902A	p.I634I	.	.	.
GRIA2	2891	broad.mit.edu	36	4	158501628	158501628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083619	exon14	c.G2308A	p.A770T	.	.	.
RXFP1	59350	broad.mit.edu	36	4	159740030	159740030	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021634	exon4	c.C389A	p.A130E	.	.	.
ETFDH	2110	broad.mit.edu	36	4	159825720	159825720	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004453	exon5	c.C505A	p.H169N	.	.	.
PPID	5481	broad.mit.edu	36	4	159855978	159855978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005038	exon6	c.G673A	p.D225N	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160483645	160483645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon15	c.G2500A	p.E834K	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162621699	162621699	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128427	exon13	c.G1528T	p.D510Y	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162651006	162651006	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128427	exon11	c.G1330T	p.E444X	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162678870	162678870	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128427	exon10	c.C1207T	p.R403C	.	.	.
NPY1R	4886	broad.mit.edu	36	4	164466074	164466074	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000909	exon3	c.G986A	p.R329K	.	.	.
TKTL2	84076	broad.mit.edu	36	4	164613070	164613070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032136	exon1	c.G1267A	p.V423I	.	.	.
C4orf43	55319	broad.mit.edu	36	4	164654702	164654702	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018352	exon4	c.C181A	p.H61N	.	.	.
MARCH1	55016	broad.mit.edu	36	4	164669586	164669586	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166373	exon8	c.C634A	p.L212I	.	.	.
TRIM60	166655	broad.mit.edu	36	4	166180866	166180866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152620	exon3	c.C192T	p.S64S	.	.	.
KLHL2	11275	broad.mit.edu	36	4	166452075	166452075	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161521	exon11	c.C1259T	p.S420F	.	.	.
CPE	1363	broad.mit.edu	36	4	166605001	166605001	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001873	exon2	c.A317C	p.E106A	.	.	.
SLBP	7884	broad.mit.edu	36	4	1671114	1671114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006527	exon5	c.G454A	p.D152N	.	.	.
TLL1	7092	broad.mit.edu	36	4	167218622	167218622	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012464	exon18	c.G2432A	p.R811Q	.	.	.
DDX60	55601	broad.mit.edu	36	4	169441183	169441183	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017631	exon13	c.A1711G	p.K571E	.	.	.
DDX60	55601	broad.mit.edu	36	4	169445929	169445929	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017631	exon9	c.C1154A	p.A385D	.	.	.
PALLD	23022	broad.mit.edu	36	4	169669257	169669257	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016081	exon2	c.C27A	p.S9S	.	.	.
SH3RF1	57630	broad.mit.edu	36	4	170294340	170294340	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020870	exon5	c.T772C	p.S258P	.	.	.
NEK1	4750	broad.mit.edu	36	4	170665985	170665985	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199397	exon21	c.C1822T	p.R608C	.	.	.
NEK1	4750	broad.mit.edu	36	4	170695581	170695581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199397	exon19	c.G1619A	p.R540Q	.	.	.
NEK1	4750	broad.mit.edu	36	4	170713473	170713473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199397	exon18	c.C1535T	p.A512V	.	.	.
NEK1	4750	broad.mit.edu	36	4	170734772	170734772	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199397	exon12	c.C902A	p.S301Y	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170846789	170846789	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001829	exon5	c.G439T	p.D147Y	.	.	.
CLCN3	1182	broad.mit.edu	36	4	170855038	170855038	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001829	exon9	c.T1141C	p.Y381H	.	.	.
C4orf27	54969	broad.mit.edu	36	4	170889437	170889437	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017867	exon7	c.G902T	p.G301V	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175801547	175801547	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042543	exon9	c.C1315A	p.L439I	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175840554	175840554	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042543	exon6	c.G686C	p.R229P	.	.	.
GLRA3	8001	broad.mit.edu	36	4	175886296	175886296	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042543	exon4	c.C396A	p.F132L	.	.	.
ADAM29	11086	broad.mit.edu	36	4	176135024	176135024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130705	exon3	c.G1773A	p.K591K	.	.	.
GPM6A	2823	broad.mit.edu	36	4	176793130	176793130	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201591	exon7	c.G757T	p.D253Y	.	.	.
WDR17	116966	broad.mit.edu	36	4	177283281	177283281	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170710	exon6	c.G643T	p.E215X	.	.	.
WDR17	116966	broad.mit.edu	36	4	177330619	177330619	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170710	exon26	c.G3319T	p.E1107X	.	.	.
WDR17	116966	broad.mit.edu	36	4	177337685	177337685	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170710	exon31	c.C3930T	p.F1310F	.	.	.
SPATA4	132851	broad.mit.edu	36	4	177351726	177351726	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144644	exon2	c.G220T	p.D74Y	.	.	.
ASB5	140458	broad.mit.edu	36	4	177379381	177379381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080874	exon5	c.G589A	p.E197K	.	.	.
SPCS3	60559	broad.mit.edu	36	4	177486463	177486463	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021928	exon5	c.G531A	p.T177T	.	.	.
VEGFC	7424	broad.mit.edu	36	4	177842090	177842090	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005429	exon7	c.G1244T	p.R415I	.	.	.
VEGFC	7424	broad.mit.edu	36	4	177845555	177845555	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005429	exon6	c.G925T	p.E309X	.	.	.
NEIL3	55247	broad.mit.edu	36	4	178511857	178511857	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018248	exon8	c.A1441G	p.N481D	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912988	183912988	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon21	c.A4474G	p.N1492D	.	.	.
WWC2	80014	broad.mit.edu	36	4	184403593	184403593	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024949	exon6	c.C633T	p.S211S	.	.	.
WWC2	80014	broad.mit.edu	36	4	184423246	184423246	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024949	exon12	c.C2031T	p.F677F	.	.	.
CDKN2AIP	55602	broad.mit.edu	36	4	184605290	184605290	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017632	exon3	c.G1459T	p.E487X	.	.	.
RWDD4	201965	broad.mit.edu	36	4	184799601	184799601	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152682	exon7	c.C549A	p.G183G	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184865018	184865018	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199053	exon28	c.C3120T	p.T1040T	.	.	.
IRF2	3660	broad.mit.edu	36	4	185576744	185576744	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002199	exon4	c.G300T	p.K100N	.	.	.
IRF2	3660	broad.mit.edu	36	4	185577682	185577682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002199	exon3	c.C122T	p.A41V	.	.	.
CASP3	836	broad.mit.edu	36	4	185790455	185790455	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032991	exon4	c.G268T	p.D90Y	.	.	.
CCDC111	201973	broad.mit.edu	36	4	185836460	185836460	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152683	exon8	c.G925T	p.D309Y	.	.	.
MLF1IP	79682	broad.mit.edu	36	4	185860528	185860528	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024629	exon9	c.G859T	p.E287X	.	.	.
SLC25A4	291	broad.mit.edu	36	4	186303965	186303965	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001151	exon3	c.T657G	p.S219R	.	.	.
KIAA1430	57587	broad.mit.edu	36	4	186349292	186349292	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020827	exon2	c.A53G	p.D18G	.	.	.
SNX25	83891	broad.mit.edu	36	4	186417025	186417025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031953	exon3	c.C52T	p.L18L	.	.	.
LRP2BP	55805	broad.mit.edu	36	4	186535104	186535104	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018409	exon2	c.G169T	p.G57X	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186616783	186616783	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152775	exon6	c.C1952A	p.S651Y	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186617027	186617027	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152775	exon6	c.G1708T	p.E570X	.	.	.
CCDC110	256309	broad.mit.edu	36	4	186617545	186617545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152775	exon6	c.G1190A	p.R397K	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187321765	187321765	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006655	exon9	c.C1027A	p.L343I	.	.	.
FAT1	2195	broad.mit.edu	36	4	187762060	187762060	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon19	c.G10614T	p.E3538D	.	.	.
FAT1	2195	broad.mit.edu	36	4	187777590	187777590	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.G7144A	p.D2382N	.	.	.
FAT1	2195	broad.mit.edu	36	4	187779145	187779145	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.G5589A	p.A1863A	.	.	.
FAT1	2195	broad.mit.edu	36	4	187866022	187866022	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon2	c.A1954C	p.N652H	.	.	.
ZFP42	132625	broad.mit.edu	36	4	189160973	189160973	+	Missense_Mutation	SNP	G	T	T	rs12641972	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174900	exon4	c.G18T	p.K6N	.	.	.
TRIML1	339976	broad.mit.edu	36	4	189298060	189298060	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178556	exon1	c.G354T	p.Q118H	.	.	.
TUBB4Q	56604	broad.mit.edu	36	4	191141370	191141370	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020040	exon4	c.G605T	p.R202I	.	.	.
WHSC2	7469	broad.mit.edu	36	4	1961263	1961263	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005663	exon3	c.G547A	p.A183T	.	.	.
WHSC2	7469	broad.mit.edu	36	4	1963084	1963084	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005663	exon2	c.G400T	p.E134X	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20134608	20134608	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon13	c.C1258T	p.R420W	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20150166	20150166	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon19	c.T1837C	p.L613L	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20164678	20164678	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon26	c.T2714G	p.F905C	.	.	.
SLIT2	9353	broad.mit.edu	36	4	20229503	20229503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004787	exon37	c.G4363T	p.G1455W	.	.	.
KCNIP4	80333	broad.mit.edu	36	4	20360386	20360386	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001035004	exon4	c.C240T	p.F80F	.	.	.
GPR125	166647	broad.mit.edu	36	4	21998671	21998671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145290	exon19	c.G3721A	p.D1241N	.	.	.
DHX15	1665	broad.mit.edu	36	4	24165517	24165517	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001358	exon5	c.C1009T	p.R337X	.	.	.
DHX15	1665	broad.mit.edu	36	4	24187120	24187120	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001358	exon2	c.G351A	p.P117P	.	.	.
LGI2	55203	broad.mit.edu	36	4	24614529	24614529	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018176	exon8	c.G1280A	p.R427Q	.	.	.
LGI2	55203	broad.mit.edu	36	4	24614807	24614807	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018176	exon8	c.C1002T	p.I334I	.	.	.
SLC34A2	10568	broad.mit.edu	36	4	25286959	25286959	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006424	exon13	c.C1563A	p.I521I	.	.	.
SEL1L3	23231	broad.mit.edu	36	4	25430585	25430585	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015187	exon8	c.G1366T	p.E456X	.	.	.
CCKAR	886	broad.mit.edu	36	4	26099990	26099990	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000730	exon2	c.C327T	p.F109F	.	.	.
NOP14	8602	broad.mit.edu	36	4	2921622	2921622	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003703	exon8	c.C1119T	p.S373S	.	.	.
GRK4	2868	broad.mit.edu	36	4	3006960	3006960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182982	exon13	c.C1319T	p.A440V	.	.	.
PCDH7	5099	broad.mit.edu	36	4	30333654	30333654	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173523	exon1	c.C1512A	p.V504V	.	.	.
HTT	3064	broad.mit.edu	36	4	3102897	3102897	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon15	c.G2073A	p.S691S	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35746239	35746239	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon33	c.C4800A	p.S1600S	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35829021	35829021	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon16	c.G2793A	p.L931L	.	.	.
ARAP2	116984	broad.mit.edu	36	4	35838487	35838487	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015230	exon13	c.G2431T	p.E811X	.	.	.
RELL1	768211	broad.mit.edu	36	4	37313032	37313032	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085399	exon5	c.C552T	p.G184G	.	.	.
TBC1D1	23216	broad.mit.edu	36	4	37796155	37796155	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015173	exon17	c.T2909C	p.F970S	.	.	.
TLR1	7096	broad.mit.edu	36	4	38476522	38476522	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003263	exon4	c.C326A	p.S109Y	.	.	.
TLR6	10333	broad.mit.edu	36	4	38506239	38506239	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006068	exon2	c.T1251C	p.S417S	.	.	.
TLR6	10333	broad.mit.edu	36	4	38506706	38506706	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006068	exon2	c.A784G	p.T262A	.	.	.
TLR6	10333	broad.mit.edu	36	4	38507076	38507076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006068	exon2	c.C414T	p.I138I	.	.	.
FAM114A1	92689	broad.mit.edu	36	4	38556413	38556413	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138389	exon3	c.G319A	p.E107K	.	.	.
KLHL5	51088	broad.mit.edu	36	4	38760112	38760112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015990	exon4	c.C976T	p.R326C	.	.	.
RFC1	5981	broad.mit.edu	36	4	39005664	39005664	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon5	c.A439C	p.N147H	.	.	.
RPL9	6133	broad.mit.edu	36	4	39134468	39134468	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000661	exon5	c.G344A	p.R115Q	.	.	.
UGDH	7358	broad.mit.edu	36	4	39182432	39182432	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184700	exon9	c.G1062T	p.K354N	.	.	.
UGDH	7358	broad.mit.edu	36	4	39182513	39182513	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184700	exon9	c.C981T	p.L327L	.	.	.
PDS5A	23244	broad.mit.edu	36	4	39544921	39544921	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100399	exon23	c.C2597T	p.A866V	.	.	.
N4BP2	55728	broad.mit.edu	36	4	39780306	39780306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018177	exon4	c.C446T	p.A149V	.	.	.
NSUN7	79730	broad.mit.edu	36	4	40495663	40495663	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024677	exon10	c.A1385C	p.K462T	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41732058	41732058	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006345	exon7	c.G620T	p.R207I	.	.	.
SLC30A9	10463	broad.mit.edu	36	4	41759793	41759793	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006345	exon11	c.G930A	p.S310S	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42240710	42240710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006095	exon20	c.G1703A	p.R568Q	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42291106	42291106	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105529	exon7	c.G481T	p.G161C	.	.	.
OTOP1	133060	broad.mit.edu	36	4	4241573	4241573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177998	exon6	c.G1697A	p.R566Q	.	.	.
ZNF721	170960	broad.mit.edu	36	4	427072	427072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133474	exon3	c.G1184A	p.G395D	.	.	.
ZBTB49	166793	broad.mit.edu	36	4	4355091	4355091	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145291	exon3	c.G627A	p.Q209Q	.	.	.
ZBTB49	166793	broad.mit.edu	36	4	4373643	4373643	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145291	exon8	c.A1997G	p.D666G	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45761281	45761281	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173536	exon5	c.G559A	p.E187K	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45820603	45820603	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173536	exon1	c.A85G	p.T29A	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46661980	46661980	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000809	exon8	c.A898G	p.T300A	.	.	.
GABRB1	2560	broad.mit.edu	36	4	47016981	47016981	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000812	exon5	c.G542T	p.S181I	.	.	.
GABRB1	2560	broad.mit.edu	36	4	47103606	47103606	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000812	exon8	c.A986G	p.Y329C	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47209580	47209580	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon2	c.G266T	p.R89I	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47251620	47251620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon11	c.G1756A	p.D586N	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47255033	47255033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon12	c.C2420T	p.S807L	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47265647	47265647	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon16	c.G2890T	p.E964X	.	.	.
CORIN	10699	broad.mit.edu	36	4	47320349	47320349	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon19	c.G2536A	p.E846K	.	.	.
CORIN	10699	broad.mit.edu	36	4	47320507	47320507	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon19	c.G2378A	p.R793H	.	.	.
CORIN	10699	broad.mit.edu	36	4	47323294	47323294	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon17	c.G2200T	p.E734X	.	.	.
CORIN	10699	broad.mit.edu	36	4	47460310	47460310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon4	c.G460A	p.A154T	.	.	.
TEC	7006	broad.mit.edu	36	4	47846358	47846358	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003215	exon11	c.A979G	p.I327V	.	.	.
FRYL	285527	broad.mit.edu	36	4	48219845	48219845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon54	c.C7351T	p.R2451C	.	.	.
CWH43	80157	broad.mit.edu	36	4	48688763	48688763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025087	exon4	c.G410A	p.R137H	.	.	.
CYTL1	54360	broad.mit.edu	36	4	5069587	5069587	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018659	exon3	c.C204A	p.Y68X	.	.	.
LRRC66	339977	broad.mit.edu	36	4	52555958	52555958	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024611	exon4	c.G1987T	p.D663Y	.	.	.
SGCB	6443	broad.mit.edu	36	4	52589776	52589776	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000232	exon4	c.C498T	p.I166I	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53434955	53434955	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152540	exon9	c.C1993T	p.P665S	.	.	.
SCFD2	152579	broad.mit.edu	36	4	53874662	53874662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152540	exon3	c.G1033A	p.E345K	.	.	.
FIP1L1	81608	broad.mit.edu	36	4	54019711	54019711	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134937	exon17	c.G1616A	p.R539Q	.	.	.
LNX1	84708	broad.mit.edu	36	4	54068327	54068327	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126328	exon4	c.T689C	p.V230A	.	.	.
CHIC2	26511	broad.mit.edu	36	4	54571024	54571024	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012110	exon6	c.G493T	p.D165Y	.	.	.
GSX2	170825	broad.mit.edu	36	4	54661343	54661343	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133267	exon1	c.G75A	p.P25P	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54822025	54822025	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon3	c.G56T	p.S19I	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54822218	54822218	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon3	c.G249A	p.T83T	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54828250	54828250	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon6	c.T797C	p.V266A	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54828354	54828354	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon6	c.G901T	p.E301X	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54828535	54828535	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon7	c.G991T	p.E331X	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54848444	54848444	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon19	c.C2653T	p.L885F	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54856051	54856051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006206	exon23	c.C3125T	p.S1042L	.	.	.
KIT	3815	broad.mit.edu	36	4	55256515	55256515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000222	exon2	c.G148A	p.V50M	.	.	.
KIT	3815	broad.mit.edu	36	4	55286893	55286893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000222	exon9	c.G1460A	p.G487D	.	.	.
KDR	3791	broad.mit.edu	36	4	55671656	55671656	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon8	c.C1013A	p.S338Y	.	.	.
SRD5A3	79644	broad.mit.edu	36	4	55925113	55925113	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024592	exon3	c.C480T	p.V160V	.	.	.
EVC2	132884	broad.mit.edu	36	4	5637254	5637254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147127	exon17	c.C3054T	p.S1018S	.	.	.
EXOC1	55763	broad.mit.edu	36	4	56451214	56451214	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018261	exon12	c.T1444G	p.S482A	.	.	.
EVC2	132884	broad.mit.edu	36	4	5678476	5678476	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147127	exon13	c.C1947A	p.V649V	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57571761	57571761	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000938	exon12	c.G1639T	p.E547X	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57576440	57576440	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000938	exon14	c.G1816A	p.D606N	.	.	.
POLR2B	5431	broad.mit.edu	36	4	57576551	57576551	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000938	exon14	c.T1927A	p.L643M	.	.	.
EVC	2121	broad.mit.edu	36	4	5781968	5781968	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon3	c.G334T	p.A112S	.	.	.
EVC	2121	broad.mit.edu	36	4	5797930	5797930	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon7	c.A900C	p.E300D	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62483196	62483196	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon11	c.T1952G	p.L651W	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62592800	62592800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon22	c.G3548A	p.R1183Q	.	.	.
TECRL	253017	broad.mit.edu	36	4	64828507	64828507	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010874	exon12	c.A970T	p.I324F	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65913465	65913465	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004439	exon12	c.G2101T	p.E701X	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65915682	65915682	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004439	exon10	c.C1912A	p.H638N	.	.	.
TMPRSS11D	9407	broad.mit.edu	36	4	68381677	68381677	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004262	exon7	c.G532T	p.D178Y	.	.	.
TMPRSS11A	339967	broad.mit.edu	36	4	68459733	68459733	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182606	exon10	c.T1188C	p.C396C	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68881671	68881671	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133370	exon5	c.C923A	p.S308Y	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68886039	68886039	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133370	exon3	c.G305T	p.R102I	.	.	.
UGT2B17	7367	broad.mit.edu	36	4	69099026	69099026	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077	exon5	c.T1277C	p.L426S	.	.	.
UGT2B17	7367	broad.mit.edu	36	4	69100201	69100201	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077	exon4	c.G1029T	p.K343N	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6914223	6914223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014743	exon7	c.G1213A	p.E405K	.	.	.
UGT2B7	7364	broad.mit.edu	36	4	69996964	69996964	+	Missense_Mutation	SNP	T	G	G	rs61361928	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001074	exon1	c.T137G	p.L46R	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70114440	70114440	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001073	exon1	c.T590G	p.V197G	.	.	.
UGT2B11	10720	broad.mit.edu	36	4	70114825	70114825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001073	exon1	c.G205A	p.A69T	.	.	.
UGT2B4	7363	broad.mit.edu	36	4	70381150	70381150	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021139	exon6	c.G1378A	p.A460T	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70489876	70489876	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105677	exon6	c.G1390A	p.E464K	.	.	.
UGT2A1	10941	broad.mit.edu	36	4	70539593	70539593	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105677	exon1	c.G331T	p.E111X	.	.	.
SULT1B1	27284	broad.mit.edu	36	4	70630808	70630808	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014465	exon7	c.G778T	p.G260W	.	.	.
TBC1D14	57533	broad.mit.edu	36	4	7063336	7063336	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113361	exon11	c.A1574G	p.D525G	.	.	.
SULT1B1	27284	broad.mit.edu	36	4	70634464	70634464	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014465	exon5	c.G483T	p.E161D	.	.	.
CCDC96	257236	broad.mit.edu	36	4	7094446	7094446	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153376	exon1	c.C1121T	p.A374V	.	.	.
GRPEL1	80273	broad.mit.edu	36	4	7113577	7113577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025196	exon4	c.C567T	p.G189G	.	.	.
SMR3B	10879	broad.mit.edu	36	4	71289987	71289987	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006685	exon3	c.G73T	p.G25C	.	.	.
ENAM	10117	broad.mit.edu	36	4	71727581	71727581	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031889	exon9	c.G1574T	p.R525I	.	.	.
ENAM	10117	broad.mit.edu	36	4	71728110	71728110	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031889	exon9	c.C2103A	p.P701P	.	.	.
UTP3	57050	broad.mit.edu	36	4	71774225	71774225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020368	exon1	c.C967T	p.R323C	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72321188	72321188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134742	exon2	c.G31A	p.A11T	.	.	.
SLC4A4	8671	broad.mit.edu	36	4	72618834	72618834	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003759	exon15	c.C2175T	p.F725F	.	.	.
NPFFR2	10886	broad.mit.edu	36	4	73213340	73213340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144756	exon3	c.C177A	p.F59L	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73388640	73388640	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon17	c.G2282T	p.G761V	.	.	.
COX18	285521	broad.mit.edu	36	4	74152647	74152647	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173827	exon2	c.C397T	p.R133C	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74219832	74219832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198889	exon15	c.G2347A	p.A783T	.	.	.
AFM	173	broad.mit.edu	36	4	74576636	74576636	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001133	exon8	c.C1027T	p.R343X	.	.	.
ZNF595	152687	broad.mit.edu	36	4	76287	76287	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182524	exon4	c.G892T	p.A298S	.	.	.
RCHY1	25898	broad.mit.edu	36	4	76626897	76626897	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015436	exon9	c.C661A	p.L221I	.	.	.
C4orf26	152816	broad.mit.edu	36	4	76708415	76708415	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178497	exon2	c.C135A	p.I45I	.	.	.
C4orf26	152816	broad.mit.edu	36	4	76708510	76708510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178497	exon2	c.G230A	p.R77Q	.	.	.
CDKL2	8999	broad.mit.edu	36	4	76741385	76741385	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003948	exon9	c.A1080C	p.K360N	.	.	.
G3BP2	9908	broad.mit.edu	36	4	76790631	76790631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203505	exon11	c.C1091T	p.T364I	.	.	.
G3BP2	9908	broad.mit.edu	36	4	76801884	76801884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203505	exon4	c.C232T	p.R78C	.	.	.
ZNF595	152687	broad.mit.edu	36	4	77061	77061	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182524	exon4	c.A1666T	p.K556X	.	.	.
NUP54	53371	broad.mit.edu	36	4	77274500	77274500	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017426	exon5	c.G562A	p.D188N	.	.	.
CCDC158	339965	broad.mit.edu	36	4	77536448	77536448	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042784	exon3	c.G286A	p.E96K	.	.	.
SORCS2	57537	broad.mit.edu	36	4	7776487	7776487	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020777	exon19	c.C2588T	p.A863V	.	.	.
AFAP1	60312	broad.mit.edu	36	4	7862380	7862380	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198595	exon9	c.G915T	p.K305N	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79392704	79392704	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon5	c.C444T	p.C148C	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79604282	79604282	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon48	c.T6847C	p.S2283P	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79656063	79656063	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon66	c.C10261T	p.R3421X	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79659656	79659656	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon67	c.A10537G	p.T3513A	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79679531	79679531	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon73	c.C11358A	p.H3786Q	.	.	.
NAA11	84779	broad.mit.edu	36	4	80465984	80465984	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032693	exon1	c.G72T	p.E24D	.	.	.
GK2	2712	broad.mit.edu	36	4	80547314	80547314	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033214	exon1	c.T1065G	p.S355S	.	.	.
ANTXR2	118429	broad.mit.edu	36	4	81118237	81118237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145794	exon15	c.G1295A	p.R432Q	.	.	.
FGF5	2250	broad.mit.edu	36	4	81426696	81426696	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004464	exon3	c.G653T	p.R218I	.	.	.
BMP3	651	broad.mit.edu	36	4	82186629	82186629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001201	exon2	c.C1030T	p.R344W	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82275385	82275385	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006259	exon13	c.G1724T	p.R575I	.	.	.
SH3TC1	54436	broad.mit.edu	36	4	8284730	8284730	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018986	exon13	c.G3078T	p.E1026D	.	.	.
ENOPH1	58478	broad.mit.edu	36	4	83588118	83588118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021204	exon2	c.G106A	p.E36K	.	.	.
ENOPH1	58478	broad.mit.edu	36	4	83595001	83595001	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021204	exon4	c.C492T	p.F164F	.	.	.
THAP9	79725	broad.mit.edu	36	4	84046737	84046737	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024672	exon3	c.T513G	p.I171M	.	.	.
THAP9	79725	broad.mit.edu	36	4	84057284	84057284	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024672	exon5	c.T895G	p.L299V	.	.	.
HPSE	10855	broad.mit.edu	36	4	84450993	84450993	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166498	exon6	c.C748A	p.H250N	.	.	.
HELQ	113510	broad.mit.edu	36	4	84569904	84569904	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133636	exon12	c.A2315G	p.D772G	.	.	.
FAM175A	84142	broad.mit.edu	36	4	84610432	84610432	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139076	exon5	c.G424T	p.E142X	.	.	.
AGPAT9	84803	broad.mit.edu	36	4	84738860	84738860	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032717	exon11	c.T1165C	p.S389P	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85831891	85831891	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon60	c.C9121A	p.L3041I	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85842576	85842576	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon56	c.C8550A	p.F2850L	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85853413	85853413	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon51	c.T7965A	p.F2655L	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85930031	85930031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon22	c.C3541T	p.R1181C	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85969297	85969297	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon9	c.C840T	p.V280V	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85990132	85990132	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon5	c.T251A	p.V84D	.	.	.
CPZ	8532	broad.mit.edu	36	4	8658626	8658626	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014447	exon5	c.G720T	p.E240D	.	.	.
MAPK10	5602	broad.mit.edu	36	4	87207966	87207966	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138981	exon5	c.G534T	p.E178D	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87890656	87890656	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080683	exon18	c.C2660T	p.S887L	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87911626	87911626	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080683	exon31	c.T5082C	p.H1694H	.	.	.
DMP1	1758	broad.mit.edu	36	4	88803050	88803050	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079911	exon5	c.G1048T	p.D350Y	.	.	.
PKD2	5311	broad.mit.edu	36	4	89208122	89208122	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000297	exon13	c.C2407T	p.R803X	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89232421	89232421	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004827	exon16	c.A1957G	p.K653E	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89253617	89253617	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004827	exon9	c.T1056A	p.L352L	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89271329	89271329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004827	exon5	c.C439T	p.R147W	.	.	.
HERC6	55008	broad.mit.edu	36	4	89568857	89568857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165136	exon15	c.C1929T	p.V643V	.	.	.
HERC5	51191	broad.mit.edu	36	4	89616166	89616166	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016323	exon12	c.T1544G	p.V515G	.	.	.
HERC5	51191	broad.mit.edu	36	4	89634483	89634483	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016323	exon18	c.G2422T	p.E808X	.	.	.
FAM13A	10144	broad.mit.edu	36	4	90131195	90131195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014883	exon4	c.G557A	p.R186H	.	.	.
GPRIN3	285513	broad.mit.edu	36	4	90388233	90388233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198281	exon2	c.C2052T	p.V684V	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91067991	91067991	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007351	exon5	c.T978G	p.D326E	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91075364	91075364	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007351	exon6	c.G1510T	p.E504X	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91076630	91076630	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007351	exon6	c.G2776A	p.E926K	.	.	.
MMRN1	22915	broad.mit.edu	36	4	91076891	91076891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007351	exon6	c.G3037A	p.A1013T	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91608482	91608482	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145065	exon5	c.G1678T	p.E560X	.	.	.
TMSL3	7117	broad.mit.edu	36	4	91979085	91979085	+	Missense_Mutation	SNP	C	T	T	rs55773729	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183049	exon1	c.G127A	p.E43K	.	.	.
TMEM175	84286	broad.mit.edu	36	4	935033	935033	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032326	exon5	c.C329T	p.A110V	.	.	.
GRID2	2895	broad.mit.edu	36	4	94364855	94364855	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001510	exon7	c.A1031G	p.D344G	.	.	.
ATOH1	474	broad.mit.edu	36	4	94970031	94970031	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005172	exon1	c.T931G	p.L311V	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95374181	95374181	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128429	exon4	c.G422T	p.R141I	.	.	.
SMARCAD1	56916	broad.mit.edu	36	4	95418871	95418871	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128429	exon18	c.C2260A	p.L754I	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96289019	96289019	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001203	exon11	c.T1174G	p.F392V	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96343011	96343011	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003728	exon12	c.C2030T	p.A677V	.	.	.
UNC5C	8633	broad.mit.edu	36	4	96418437	96418437	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003728	exon4	c.C590A	p.A197D	.	.	.
PDHA2	5161	broad.mit.edu	36	4	96980915	96980915	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005390	exon1	c.G591A	p.A197A	.	.	.
C4orf37	285555	broad.mit.edu	36	4	99283270	99283270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174952	exon1	c.G55A	p.A19T	.	.	.
RAP1GDS1	5910	broad.mit.edu	36	4	99574201	99574201	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100427	exon13	c.T1532G	p.L511R	.	.	.
TSPAN5	10098	broad.mit.edu	36	4	99622226	99622226	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005723	exon4	c.C403A	p.R135R	.	.	.
TSPAN5	10098	broad.mit.edu	36	4	99798381	99798381	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005723	exon1	c.A20C	p.K7T	.	.	.
PPP3CA	5530	broad.mit.edu	36	4	102220703	102220703	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBE2D3	7323	broad.mit.edu	36	4	103949928	103949928	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CENPE	1062	broad.mit.edu	36	4	104317664	104317664	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CASP6	839	broad.mit.edu	36	4	110835119	110835119	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PITX2	5308	broad.mit.edu	36	4	111773553	111773553	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANK2	287	broad.mit.edu	36	4	114451849	114451849	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NDST4	64579	broad.mit.edu	36	4	115970386	115970386	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NDST3	9348	broad.mit.edu	36	4	119396184	119396184	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MAD2L1	4085	broad.mit.edu	36	4	121207257	121207257	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BBS7	55212	broad.mit.edu	36	4	123002102	123002102	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LARP1B	55132	broad.mit.edu	36	4	129347022	129347022	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GYPA	2993	broad.mit.edu	36	4	145259311	145259311	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OTUD4	54726	broad.mit.edu	36	4	146296526	146296526	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FGG	2266	broad.mit.edu	36	4	155752815	155752815	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156848903	156848903	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM144	55314	broad.mit.edu	36	4	159376115	159376115	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AADAT	51166	broad.mit.edu	36	4	171222557	171222557	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FBXO8	26269	broad.mit.edu	36	4	175398818	175398818	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GPM6A	2823	broad.mit.edu	36	4	176793214	176793214	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TLR3	7098	broad.mit.edu	36	4	187242328	187242328	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187312798	187312798	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	4	24130938	24130938	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ANAPC4	29945	broad.mit.edu	36	4	25026264	25026264	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	4	26771582	26771582	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HTT	3064	broad.mit.edu	36	4	3152184	3152184	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM156	80008	broad.mit.edu	36	4	38666993	38666993	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RFC1	5981	broad.mit.edu	36	4	39004656	39004656	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UBE2K	3093	broad.mit.edu	36	4	39415536	39415536	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ATP8A1	10396	broad.mit.edu	36	4	42143424	42143424	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45780751	45780751	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COX7B2	170712	broad.mit.edu	36	4	46431712	46431712	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GABRA4	2557	broad.mit.edu	36	4	46661743	46661743	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NFXL1	152518	broad.mit.edu	36	4	47594733	47594733	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OCIAD2	132299	broad.mit.edu	36	4	48582254	48582254	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SPATA18	132671	broad.mit.edu	36	4	52639653	52639653	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SPATA18	132671	broad.mit.edu	36	4	52640849	52640849	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EVC2	132884	broad.mit.edu	36	4	5678369	5678369	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EVC2	132884	broad.mit.edu	36	4	5693137	5693137	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EVC	2121	broad.mit.edu	36	4	5771864	5771864	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	4	6020069	6020069	+	IGR	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62131998	62131998	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TECRL	253017	broad.mit.edu	36	4	64923478	64923478	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBA6	55236	broad.mit.edu	36	4	68178768	68178768	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SYT14L	401135	broad.mit.edu	36	4	68611088	68611088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UGT2B15	7366	broad.mit.edu	36	4	69570719	69570719	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SCARB2	950	broad.mit.edu	36	4	77319686	77319686	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRKG2	5593	broad.mit.edu	36	4	82307328	82307328	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AFF1	4299	broad.mit.edu	36	4	88254537	88254537	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PPM1K	152926	broad.mit.edu	36	4	89402767	89402767	+	3'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SNCA	6622	broad.mit.edu	36	4	90975714	90975714	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GPR98	84059	broad.mit.edu	36	5	90015432	90015433	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032119	exon28	c.5938_5939insT	p.I1980fs	.	.	.
GOLPH3	64083	broad.mit.edu	36	5	32162477	32162477	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022130	exon4	c.495delA	p.K165fs	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100175657	100175657	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005668	exon5	c.C873A	p.F291L	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100219895	100219895	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005668	exon4	c.G608A	p.R203Q	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100219964	100219964	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005668	exon4	c.A539C	p.D180A	.	.	.
ST8SIA4	7903	broad.mit.edu	36	5	100259258	100259258	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005668	exon2	c.A244C	p.R82R	.	.	.
SLCO4C1	353189	broad.mit.edu	36	5	101602904	101602904	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_180991	exon12	c.C1964A	p.A655D	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101783537	101783537	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173488	exon8	c.T1364C	p.M455T	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101862254	101862254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173488	exon1	c.G194A	p.R65Q	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101862322	101862322	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173488	exon1	c.G126A	p.S42S	.	.	.
PAM	5066	broad.mit.edu	36	5	102337859	102337859	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138822	exon14	c.C1303A	p.L435I	.	.	.
PAM	5066	broad.mit.edu	36	5	102383400	102383400	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138822	exon22	c.A2439G	p.E813E	.	.	.
GIN1	54826	broad.mit.edu	36	5	102451518	102451518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017676	exon8	c.C1552T	p.L518F	.	.	.
PPIP5K2	23262	broad.mit.edu	36	5	102536830	102536830	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015216	exon19	c.C2359T	p.R787C	.	.	.
C5orf30	90355	broad.mit.edu	36	5	102639529	102639529	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033211	exon3	c.G10A	p.D4N	.	.	.
CCT5	22948	broad.mit.edu	36	5	10309073	10309073	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012073	exon4	c.C338A	p.A113D	.	.	.
MARCH6	10299	broad.mit.edu	36	5	10431927	10431927	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005885	exon3	c.G173T	p.R58I	.	.	.
FER	2241	broad.mit.edu	36	5	108408392	108408392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005246	exon15	c.C1826T	p.A609V	.	.	.
FER	2241	broad.mit.edu	36	5	108549873	108549873	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005246	exon19	c.T2277C	p.C759C	.	.	.
MAN2A1	4124	broad.mit.edu	36	5	109148369	109148369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002372	exon10	c.G1603A	p.A535T	.	.	.
WDR36	134430	broad.mit.edu	36	5	110455968	110455968	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139281	exon1	c.G83T	p.R28M	.	.	.
CAMK4	814	broad.mit.edu	36	5	110758351	110758351	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001744	exon5	c.C431T	p.A144V	.	.	.
CAMK4	814	broad.mit.edu	36	5	110847781	110847781	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001744	exon11	c.C1140T	p.G380G	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11135937	11135937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon16	c.G2659A	p.A887T	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11170571	11170571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon13	c.C2268T	p.I756I	.	.	.
APC	324	broad.mit.edu	36	5	112118491	112118491	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127510	exon3	c.C5A	p.A2D	.	.	.
APC	324	broad.mit.edu	36	5	112191568	112191568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon11	c.C1538T	p.A513V	.	.	.
APC	324	broad.mit.edu	36	5	112198564	112198564	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon13	c.C1707T	p.S569S	.	.	.
APC	324	broad.mit.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
APC	324	broad.mit.edu	36	5	112204176	112204176	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C4932T	p.I1644I	.	.	.
APC	324	broad.mit.edu	36	5	112206476	112206476	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.C7232T	p.S2411F	.	.	.
MCC	4163	broad.mit.edu	36	5	112446486	112446486	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085377	exon11	c.A1754T	p.E585V	.	.	.
TSSK1B	83942	broad.mit.edu	36	5	112797719	112797719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032028	exon1	c.G717A	p.K239K	.	.	.
TSSK1B	83942	broad.mit.edu	36	5	112798306	112798306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032028	exon1	c.G130A	p.D44N	.	.	.
TSSK1B	83942	broad.mit.edu	36	5	112798419	112798419	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032028	exon1	c.T17C	p.V6A	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112912191	112912191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon11	c.G1550A	p.R517H	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112917218	112917218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon14	c.G1900A	p.E634K	.	.	.
KCNN2	3781	broad.mit.edu	36	5	113859688	113859688	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021614	exon8	c.C1650T	p.H550H	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11399569	11399569	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon9	c.C1543A	p.P515T	.	.	.
AP3S1	1176	broad.mit.edu	36	5	115205663	115205663	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001284	exon1	c.C30A	p.N10K	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115348252	115348252	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon3	c.G925A	p.A309T	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115374431	115374431	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon14	c.T2188G	p.L730V	.	.	.
AQPEP	206338	broad.mit.edu	36	5	115379317	115379317	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173800	exon18	c.C2712T	p.V904V	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118513563	118513563	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005509	exon18	c.G4142A	p.S1381N	.	.	.
TNFAIP8	25816	broad.mit.edu	36	5	118756911	118756911	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077654	exon2	c.T503G	p.F168C	.	.	.
FAM170A	340069	broad.mit.edu	36	5	118996399	118996399	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182761	exon2	c.G128A	p.G43D	.	.	.
ZNF474	133923	broad.mit.edu	36	5	121516182	121516182	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207317	exon2	c.A598G	p.N200D	.	.	.
SNCAIP	9627	broad.mit.edu	36	5	121814816	121814816	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005460	exon10	c.C2375T	p.A792V	.	.	.
SNX2	6643	broad.mit.edu	36	5	122167197	122167197	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003100	exon6	c.G633T	p.K211N	.	.	.
CEP120	153241	broad.mit.edu	36	5	122713552	122713552	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166226	exon19	c.G2633T	p.R878I	.	.	.
CEP120	153241	broad.mit.edu	36	5	122750124	122750124	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166226	exon10	c.G1489T	p.D497Y	.	.	.
CEP120	153241	broad.mit.edu	36	5	122757072	122757072	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166226	exon6	c.A553G	p.K185E	.	.	.
CSNK1G3	1456	broad.mit.edu	36	5	122954042	122954042	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001044723	exon9	c.A881C	p.D294A	.	.	.
GRAMD3	65983	broad.mit.edu	36	5	125856508	125856508	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146321	exon15	c.A1284G	p.I428M	.	.	.
PHAX	51808	broad.mit.edu	36	5	125988429	125988429	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032177	exon5	c.C1179A	p.I393I	.	.	.
C5orf48	389320	broad.mit.edu	36	5	125999771	125999771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207408	exon3	c.C344T	p.S115L	.	.	.
LMNB1	4001	broad.mit.edu	36	5	126182609	126182609	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198557	exon6	c.A406C	p.M136L	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126799037	126799037	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032446	exon17	c.T2061G	p.S687S	.	.	.
CTXN3	613212	broad.mit.edu	36	5	127021218	127021218	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127385	exon3	c.C106A	p.L36M	.	.	.
FBN2	2201	broad.mit.edu	36	5	127639738	127639738	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon59	c.C7485T	p.C2495C	.	.	.
FBN2	2201	broad.mit.edu	36	5	127699054	127699054	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon29	c.C3839T	p.S1280L	.	.	.
FBN2	2201	broad.mit.edu	36	5	127894285	127894285	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon3	c.C338T	p.P113L	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	129017950	129017950	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133638	exon14	c.T2211G	p.L737L	.	.	.
ADAMTS19	171019	broad.mit.edu	36	5	129098681	129098681	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133638	exon22	c.C3452T	p.T1151I	.	.	.
CHSY3	337876	broad.mit.edu	36	5	129548931	129548931	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175856	exon3	c.G2197T	p.D733Y	.	.	.
RAPGEF6	51735	broad.mit.edu	36	5	130827774	130827774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164389	exon18	c.C2339A	p.A780D	.	.	.
PDLIM4	8572	broad.mit.edu	36	5	131635657	131635657	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003687	exon7	c.G829A	p.E277K	.	.	.
RAD50	10111	broad.mit.edu	36	5	131972741	131972741	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005732	exon18	c.C2863A	p.H955N	.	.	.
IL4	3565	broad.mit.edu	36	5	132043383	132043383	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000589	exon3	c.C262T	p.R88C	.	.	.
KIF3A	11127	broad.mit.edu	36	5	132065724	132065724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007054	exon13	c.G1757A	p.R586Q	.	.	.
SHROOM1	134549	broad.mit.edu	36	5	132188643	132188643	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172700	exon5	c.A1000C	p.T334P	.	.	.
PPP2CA	5515	broad.mit.edu	36	5	133564662	133564662	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002715	exon4	c.C489A	p.I163I	.	.	.
SEC24A	10802	broad.mit.edu	36	5	134024863	134024863	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021982	exon2	c.A253C	p.T85P	.	.	.
SEC24A	10802	broad.mit.edu	36	5	134035448	134035448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021982	exon4	c.G790A	p.D264N	.	.	.
SEC24A	10802	broad.mit.edu	36	5	134068930	134068930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021982	exon17	c.C2455T	p.R819C	.	.	.
DDX46	9879	broad.mit.edu	36	5	134130556	134130556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014829	exon3	c.G257A	p.R86Q	.	.	.
DDX46	9879	broad.mit.edu	36	5	134141168	134141168	+	Missense_Mutation	SNP	G	A	A	rs10447293	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014829	exon6	c.G619A	p.E207K	.	.	.
CATSPER3	347732	broad.mit.edu	36	5	134333590	134333590	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178019	exon2	c.T161G	p.I54R	.	.	.
TGFBI	7045	broad.mit.edu	36	5	135416544	135416544	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000358	exon8	c.C963T	p.I321I	.	.	.
SMAD5	4090	broad.mit.edu	36	5	135524679	135524679	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001419	exon5	c.T639C	p.S213S	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135615348	135615348	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020389	exon6	c.C1467T	p.R489R	.	.	.
TRPC7	57113	broad.mit.edu	36	5	135720733	135720733	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020389	exon2	c.C242A	p.A81D	.	.	.
KLHL3	26249	broad.mit.edu	36	5	137041146	137041146	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017415	exon6	c.C623A	p.S208Y	.	.	.
PKD2L2	27039	broad.mit.edu	36	5	137272396	137272396	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014386	exon8	c.C1190A	p.S397X	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137312551	137312551	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101800	exon17	c.G2086T	p.D696Y	.	.	.
WNT8A	7478	broad.mit.edu	36	5	137454285	137454285	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058244	exon6	c.C680T	p.A227V	.	.	.
NME5	8382	broad.mit.edu	36	5	137502272	137502272	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003551	exon2	c.A97G	p.I33V	.	.	.
KIF20A	10112	broad.mit.edu	36	5	137548504	137548504	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005733	exon14	c.A1793G	p.E598G	.	.	.
CDC23	8697	broad.mit.edu	36	5	137553433	137553433	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004661	exon14	c.G1486T	p.D496Y	.	.	.
CDC25C	995	broad.mit.edu	36	5	137653107	137653107	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001790	exon10	c.G909T	p.K303N	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137754665	137754665	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon8	c.C1445A	p.P482H	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137755009	137755009	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon8	c.T1789A	p.S597T	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137784507	137784507	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon15	c.A3929G	p.D1310G	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137793468	137793468	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon21	c.T4808G	p.I1603S	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138188186	138188186	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon6	c.G657A	p.P219P	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138288953	138288953	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon13	c.T1857C	p.Y619Y	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138297667	138297667	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon18	c.A2711G	p.D904G	.	.	.
MATR3	9782	broad.mit.edu	36	5	138671895	138671895	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194955	exon2	c.T892G	p.L298V	.	.	.
MATR3	9782	broad.mit.edu	36	5	138682614	138682614	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194955	exon8	c.G1427T	p.R476I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13873543	13873543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon41	c.G6753A	p.T2251T	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13903782	13903782	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon31	c.T5093C	p.I1698T	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13903872	13903872	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon31	c.G5003T	p.R1668L	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13915815	13915815	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon29	c.A4638G	p.Q1546Q	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13917623	13917623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon28	c.G4479A	p.E1493E	.	.	.
PSD2	84249	broad.mit.edu	36	5	139196728	139196728	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032289	exon10	c.G1552A	p.V518I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13936178	13936178	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001369	exon20	c.G3009T	p.K1003N	.	.	.
PFDN1	5201	broad.mit.edu	36	5	139660265	139660265	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002622	exon2	c.G120A	p.T40T	.	.	.
HBEGF	1839	broad.mit.edu	36	5	139695729	139695729	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001945	exon4	c.A466G	p.T156A	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13973716	13973716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon6	c.G671A	p.R224Q	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139800845	139800845	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024668	exon5	c.G847T	p.G283C	.	.	.
ANKHD1-EIF4EBP3	404734	broad.mit.edu	36	5	139869946	139869946	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017747	exon22	c.G4100A	p.R1367H	.	.	.
TMCO6	55374	broad.mit.edu	36	5	140003561	140003561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018502	exon9	c.G931A	p.V311M	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140147039	140147039	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031411	exon1	c.G980T	p.S327I	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140147355	140147355	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031411	exon1	c.G1296A	p.S432S	.	.	.
PCDHA1	56147	broad.mit.edu	36	5	140147568	140147568	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031411	exon1	c.G1509A	p.A503A	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140155301	140155301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.G568A	p.E190K	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140155816	140155816	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.G1083T	p.E361D	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140156450	140156450	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.G1717A	p.A573T	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140156928	140156928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.G2195A	p.R732H	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161111	140161111	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031497	exon1	c.G145A	p.A49T	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161517	140161517	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031497	exon1	c.G551T	p.R184I	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140183117	140183117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031501	exon1	c.G1573A	p.E525K	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140188986	140188986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031849	exon1	c.G1126A	p.D376N	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140190090	140190090	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018909	exon1	c.G2230A	p.A744T	.	.	.
PCDHA8	56140	broad.mit.edu	36	5	140202978	140202978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031856	exon1	c.G1888A	p.E630K	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140209222	140209222	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.G958T	p.V320F	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210236	140210236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.G1972A	p.A658T	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140215964	140215964	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018901	exon1	c.G147T	p.Q49H	.	.	.
PCDHA11	56138	broad.mit.edu	36	5	140229683	140229683	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031861	exon1	c.G811A	p.E271K	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140236052	140236052	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031864	exon1	c.G811A	p.E271K	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140243687	140243687	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031865	exon1	c.G1650A	p.T550T	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140287676	140287676	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031882	exon1	c.G1015A	p.E339K	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140327114	140327114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018899	exon1	c.C579T	p.F193F	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140455030	140455030	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018936	exon1	c.C472T	p.R158C	.	.	.
PCDHB3	56132	broad.mit.edu	36	5	140461369	140461369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018937	exon1	c.G952A	p.D318N	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140482568	140482568	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018938	exon1	c.A804C	p.I268I	.	.	.
PCDHB4	56131	broad.mit.edu	36	5	140483581	140483581	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018938	exon1	c.T1817C	p.L606P	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140495351	140495351	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015669	exon1	c.G151T	p.D51Y	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140496417	140496417	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015669	exon1	c.G1217T	p.R406I	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140496663	140496663	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015669	exon1	c.C1463T	p.S488L	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140510626	140510626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018939	exon1	c.G604A	p.E202K	.	.	.
PCDHB6	56130	broad.mit.edu	36	5	140511861	140511861	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018939	exon1	c.C1839T	p.F613F	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140532836	140532836	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018940	exon1	c.C236T	p.S79L	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140534544	140534544	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018940	exon1	c.C1944T	p.G648G	.	.	.
PCDHB8	56128	broad.mit.edu	36	5	140539057	140539057	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019120	exon1	c.G1258A	p.V420I	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140544452	140544452	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020957	exon1	c.C2134T	p.R712W	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140548451	140548451	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019119	exon1	c.T1375C	p.S459P	.	.	.
PCDHB9	56127	broad.mit.edu	36	5	140549246	140549246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019119	exon1	c.G2170A	p.A724T	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140552437	140552437	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.C128A	p.S43Y	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140553175	140553175	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.G866A	p.R289Q	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140559828	140559828	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018931	exon1	c.C297T	p.I99I	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140560174	140560174	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018931	exon1	c.C643A	p.L215M	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140560264	140560264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018931	exon1	c.G733A	p.A245T	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140561433	140561433	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018931	exon1	c.C1902T	p.D634D	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140569112	140569112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018932	exon1	c.C449T	p.A150V	.	.	.
PCDHB12	56124	broad.mit.edu	36	5	140569242	140569242	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018932	exon1	c.G579A	p.E193E	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575967	140575967	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018933	exon1	c.G2088A	p.S696S	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140584314	140584314	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018934	exon1	c.G1053A	p.S351S	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606271	140606271	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018935	exon1	c.C941T	p.S314L	.	.	.
SLC25A2	83884	broad.mit.edu	36	5	140662883	140662883	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031947	exon1	c.A734C	p.K245T	.	.	.
TAF7	6879	broad.mit.edu	36	5	140678868	140678868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005642	exon1	c.G928A	p.E310K	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140690621	140690621	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.C186T	p.G62G	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140690866	140690866	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.A431C	p.E144A	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692525	140692525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.C2090T	p.A697V	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140699270	140699270	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.G548A	p.R183Q	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700026	140700026	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.A1304G	p.D435G	.	.	.
PCDHGA2	56113	broad.mit.edu	36	5	140700610	140700610	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032009	exon1	c.C1888T	p.R630X	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140710897	140710897	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018922	exon1	c.G886A	p.D296N	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140720204	140720204	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032096	exon1	c.C318T	p.F106F	.	.	.
PCDHGA6	56109	broad.mit.edu	36	5	140734208	140734208	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032086	exon1	c.A374G	p.D125G	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140744303	140744303	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032087	exon1	c.C1653T	p.F551F	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140753117	140753117	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032088	exon1	c.G553T	p.G185X	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140754072	140754072	+	Missense_Mutation	SNP	C	T	T	rs11575959	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032088	exon1	c.C1508T	p.S503L	.	.	.
PCDHGA8	9708	broad.mit.edu	36	5	140754450	140754450	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032088	exon1	c.C1886T	p.A629V	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140768793	140768793	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018926	exon1	c.C840A	p.Y280X	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140768965	140768965	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018926	exon1	c.C1012A	p.L338I	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140769818	140769818	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018926	exon1	c.G1865A	p.R622H	.	.	.
PCDHGB6	56100	broad.mit.edu	36	5	140770100	140770100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018926	exon1	c.G2147A	p.R716Q	.	.	.
PCDHGA10	56106	broad.mit.edu	36	5	140773237	140773237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032090	exon1	c.C311T	p.A104V	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140778868	140778868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032101	exon1	c.G1258A	p.V420I	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140783192	140783192	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018914	exon1	c.G2214A	p.T738T	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140847048	140847048	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018928	exon1	c.C2124T	p.F708F	.	.	.
PCDH12	51294	broad.mit.edu	36	5	141316873	141316873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016580	exon1	c.C728T	p.A243V	.	.	.
NDFIP1	80762	broad.mit.edu	36	5	141491581	141491581	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030571	exon2	c.G88T	p.E30X	.	.	.
FGF1	2246	broad.mit.edu	36	5	141973773	141973773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144934	exon3	c.G104A	p.G35D	.	.	.
NR3C1	2908	broad.mit.edu	36	5	142760572	142760572	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018077	exon2	c.C26A	p.P9H	.	.	.
TRIO	7204	broad.mit.edu	36	5	14340144	14340144	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon4	c.A512C	p.N171T	.	.	.
TRIO	7204	broad.mit.edu	36	5	14389771	14389771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon11	c.C1981T	p.R661W	.	.	.
PRELID2	153768	broad.mit.edu	36	5	145177810	145177810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138492	exon5	c.G121A	p.V41M	.	.	.
TRIO	7204	broad.mit.edu	36	5	14530049	14530049	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon41	c.C6130A	p.L2044I	.	.	.
LARS	51520	broad.mit.edu	36	5	145512974	145512974	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020117	exon13	c.G1240A	p.A414T	.	.	.
LARS	51520	broad.mit.edu	36	5	145537417	145537417	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020117	exon2	c.G11T	p.R4I	.	.	.
TRIO	7204	broad.mit.edu	36	5	14557649	14557649	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon55	c.C8559T	p.V2853V	.	.	.
TRIO	7204	broad.mit.edu	36	5	14561315	14561315	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon57	c.C9078T	p.F3026F	.	.	.
RBM27	54439	broad.mit.edu	36	5	145621472	145621472	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018989	exon13	c.G2100A	p.Q700Q	.	.	.
POU4F3	5459	broad.mit.edu	36	5	145700016	145700016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002700	exon2	c.G833A	p.R278H	.	.	.
PPP2R2B	5521	broad.mit.edu	36	5	145960206	145960206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181675	exon8	c.G801A	p.E267E	.	.	.
DPYSL3	1809	broad.mit.edu	36	5	146760534	146760534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197294	exon10	c.G1366A	p.A456T	.	.	.
DPYSL3	1809	broad.mit.edu	36	5	146778212	146778212	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197294	exon3	c.A646G	p.T216A	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	146991237	146991237	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon14	c.C1807A	p.L603I	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	146999488	146999488	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon10	c.G1430T	p.R477I	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147004718	147004718	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon6	c.A971C	p.K324T	.	.	.
FAM105B	90268	broad.mit.edu	36	5	14726797	14726797	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138348	exon2	c.G199T	p.E67X	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147454207	147454207	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127699	exon9	c.G764T	p.G255V	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147457655	147457655	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127699	exon11	c.G915T	p.K305N	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147457743	147457743	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127699	exon11	c.G1003T	p.A335S	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147478195	147478195	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127699	exon23	c.C2115T	p.D705D	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147485571	147485571	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127698	exon30	c.C2922A	p.F974L	.	.	.
HTR4	3360	broad.mit.edu	36	5	147883072	147883072	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040169	exon4	c.C384A	p.V128V	.	.	.
SH3TC2	79628	broad.mit.edu	36	5	148387758	148387758	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024577	exon11	c.C1730T	p.A577V	.	.	.
AFAP1L1	134265	broad.mit.edu	36	5	148675667	148675667	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152406	exon10	c.C1111A	p.H371N	.	.	.
ARHGEF37	389337	broad.mit.edu	36	5	148986907	148986907	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001669	exon11	c.A1540G	p.T514A	.	.	.
PDE6A	5145	broad.mit.edu	36	5	149259143	149259143	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000440	exon9	c.G1251A	p.E417E	.	.	.
PDE6A	5145	broad.mit.edu	36	5	149294330	149294330	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000440	exon2	c.G619T	p.D207Y	.	.	.
PDE6A	5145	broad.mit.edu	36	5	149304386	149304386	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000440	exon1	c.C44T	p.S15L	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149337666	149337666	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000112	exon2	c.A258T	p.K86N	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149337980	149337980	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000112	exon2	c.C572T	p.A191V	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149340235	149340235	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000112	exon3	c.A886G	p.N296D	.	.	.
SLC26A2	1836	broad.mit.edu	36	5	149341510	149341510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000112	exon3	c.G2161A	p.V721I	.	.	.
CSF1R	1436	broad.mit.edu	36	5	149433060	149433060	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005211	exon7	c.A1079G	p.Y360C	.	.	.
PDGFRB	5159	broad.mit.edu	36	5	149494736	149494736	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002609	exon4	c.A401G	p.E134G	.	.	.
CAMK2A	815	broad.mit.edu	36	5	149582786	149582786	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015981	exon18	c.C1425T	p.I475I	.	.	.
SYNPO	11346	broad.mit.edu	36	5	150008999	150008999	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007286	exon2	c.G969T	p.E323D	.	.	.
ANXA6	309	broad.mit.edu	36	5	150481931	150481931	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001155	exon17	c.C1317T	p.Y439Y	.	.	.
ANXA6	309	broad.mit.edu	36	5	150489242	150489242	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001155	exon12	c.C837A	p.V279V	.	.	.
SLC36A3	285641	broad.mit.edu	36	5	150637312	150637312	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145017	exon11	c.C1371T	p.I457I	.	.	.
FAT2	2196	broad.mit.edu	36	5	150872044	150872044	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon20	c.C11780G	p.A3927G	.	.	.
FAT2	2196	broad.mit.edu	36	5	150910382	150910382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon7	c.C4540T	p.L1514F	.	.	.
FAT2	2196	broad.mit.edu	36	5	150926940	150926940	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon1	c.G1746A	p.S582S	.	.	.
GLRA1	2741	broad.mit.edu	36	5	151219566	151219566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000171	exon4	c.G449A	p.R150Q	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151764810	151764810	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020167	exon1	c.G58T	p.D20Y	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153046077	153046077	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon8	c.C1129T	p.R377X	.	.	.
GRIA1	2890	broad.mit.edu	36	5	153065751	153065751	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114183	exon11	c.T1754G	p.F585C	.	.	.
HAND1	9421	broad.mit.edu	36	5	153837352	153837352	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004821	exon1	c.G410A	p.R137H	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154373985	154373985	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.G373A	p.E125K	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154377070	154377070	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.G3458T	p.G1153V	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522523	156522523	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130899	exon2	c.C1331A	p.S444Y	.	.	.
FAM71B	153745	broad.mit.edu	36	5	156522730	156522730	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130899	exon2	c.C1124T	p.A375V	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156656271	156656271	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037332	exon5	c.G298A	p.E100K	.	.	.
CLINT1	9685	broad.mit.edu	36	5	157151343	157151343	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014666	exon10	c.C1326A	p.F442L	.	.	.
UBLCP1	134510	broad.mit.edu	36	5	158644510	158644510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145049	exon11	c.G950A	p.G317E	.	.	.
IL12B	3593	broad.mit.edu	36	5	158678379	158678379	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002187	exon6	c.T798C	p.H266H	.	.	.
IL12B	3593	broad.mit.edu	36	5	158682022	158682023	+	Missense_Mutation	DNP	GT	AC	AC	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	GT	GT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002187	exon4	c.439_440GT	.	.	.	NA
PTTG1	9232	broad.mit.edu	36	5	159783896	159783896	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004219	exon4	c.C351A	p.F117L	.	.	.
GABRB2	2561	broad.mit.edu	36	5	160819349	160819349	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021911	exon5	c.C317A	p.T106N	.	.	.
GABRA6	2559	broad.mit.edu	36	5	161048636	161048636	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000811	exon4	c.A329C	p.K110T	.	.	.
GABRA6	2559	broad.mit.edu	36	5	161061150	161061150	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000811	exon9	c.C1155T	p.S385S	.	.	.
GABRA1	2554	broad.mit.edu	36	5	161242213	161242213	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127646	exon7	c.G631T	p.D211Y	.	.	.
GABRA1	2554	broad.mit.edu	36	5	161255450	161255450	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127646	exon9	c.A1057C	p.K353Q	.	.	.
MAT2B	27430	broad.mit.edu	36	5	162863005	162863005	+	5'Flank	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182796	exon1	c.G27A	p.E9E	.	.	.
MYO10	4651	broad.mit.edu	36	5	16733191	16733191	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012334	exon33	c.C4407T	p.Y1469Y	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167477934	167477934	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon10	c.T1873G	p.Y625D	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167559464	167559464	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon17	c.C3153T	p.I1051I	.	.	.
MYO10	4651	broad.mit.edu	36	5	16757716	16757716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012334	exon22	c.C2248T	p.R750W	.	.	.
PANK3	79646	broad.mit.edu	36	5	167923505	167923505	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024594	exon4	c.G779T	p.R260I	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169014048	169014048	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon2	c.G107A	p.R36Q	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169041429	169041429	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon7	c.G574A	p.D192N	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169071571	169071571	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon16	c.C1537A	p.H513N	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169073665	169073665	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004946	exon18	c.G1715A	p.R572Q	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169119346	169119346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon24	c.G2436A	p.A812A	.	.	.
FOXI1	2299	broad.mit.edu	36	5	169465638	169465638	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144769	exon1	c.G99T	p.E33D	.	.	.
LCP2	3937	broad.mit.edu	36	5	169610322	169610322	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005565	exon20	c.G1469A	p.R490Q	.	.	.
GABRP	2568	broad.mit.edu	36	5	170154878	170154878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014211	exon5	c.G329A	p.R110H	.	.	.
FBXW11	23291	broad.mit.edu	36	5	171237672	171237672	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033645	exon6	c.C754A	p.L252M	.	.	.
UBTD2	92181	broad.mit.edu	36	5	171571523	171571523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152277	exon3	c.C621T	p.F207F	.	.	.
UBTD2	92181	broad.mit.edu	36	5	171571605	171571605	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152277	exon3	c.G539A	p.R180Q	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171698754	171698754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017995	exon13	c.C1960T	p.P654S	.	.	.
SH3PXD2B	285590	broad.mit.edu	36	5	171698933	171698933	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017995	exon13	c.T1781G	p.M594R	.	.	.
C5orf41	153222	broad.mit.edu	36	5	172482726	172482726	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153607	exon8	c.G1719T	p.E573D	.	.	.
BNIP1	662	broad.mit.edu	36	5	172513954	172513954	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013980	exon4	c.G330A	p.E110E	.	.	.
CPEB4	80315	broad.mit.edu	36	5	173250391	173250391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030627	exon1	c.G1049A	p.R350H	.	.	.
CPEB4	80315	broad.mit.edu	36	5	173311542	173311542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030627	exon8	c.G1775A	p.R592Q	.	.	.
MSX2	4488	broad.mit.edu	36	5	174088979	174088979	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002449	exon2	c.G591A	p.A197A	.	.	.
DRD1	1812	broad.mit.edu	36	5	174802577	174802577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000794	exon2	c.C132T	p.V44V	.	.	.
HRH2	3274	broad.mit.edu	36	5	175043185	175043185	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022304	exon1	c.G343A	p.D115N	.	.	.
HRH2	3274	broad.mit.edu	36	5	175043711	175043711	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022304	exon1	c.C869T	p.A290V	.	.	.
CDHR2	54825	broad.mit.edu	36	5	175944195	175944195	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171976	exon19	c.G2307A	p.E769E	.	.	.
GPRIN1	114787	broad.mit.edu	36	5	175957671	175957671	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052899	exon2	c.G1771T	p.D591Y	.	.	.
GPRIN1	114787	broad.mit.edu	36	5	175958354	175958354	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052899	exon2	c.C1088A	p.T363N	.	.	.
ZNF346	23567	broad.mit.edu	36	5	176410398	176410398	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012279	exon5	c.C558A	p.F186L	.	.	.
NSD1	64324	broad.mit.edu	36	5	176494739	176494739	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon2	c.G29T	p.R10I	.	.	.
NSD1	64324	broad.mit.edu	36	5	176551582	176551582	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon3	c.G1019T	p.R340M	.	.	.
NSD1	64324	broad.mit.edu	36	5	176571645	176571645	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon5	c.A3639G	p.I1213M	.	.	.
NSD1	64324	broad.mit.edu	36	5	176595441	176595441	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon6	c.G3810T	p.E1270D	.	.	.
NSD1	64324	broad.mit.edu	36	5	176598085	176598085	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022455	exon7	c.A4163C	p.E1388A	.	.	.
SLC34A1	6569	broad.mit.edu	36	5	176747884	176747884	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167579	exon8	c.C841A	p.L281M	.	.	.
PROP1	5626	broad.mit.edu	36	5	177353857	177353857	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006261	exon2	c.G198A	p.P66P	.	.	.
HNRNPAB	3182	broad.mit.edu	36	5	177566407	177566407	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031266	exon4	c.G447T	p.K149N	.	.	.
HNRNPAB	3182	broad.mit.edu	36	5	177568964	177568964	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031266	exon6	c.G697T	p.E233X	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178071864	178071864	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005649	exon5	c.C1621T	p.R541X	.	.	.
ZNF354A	6940	broad.mit.edu	36	5	178071944	178071944	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005649	exon5	c.G1541T	p.R514I	.	.	.
ZNF354B	117608	broad.mit.edu	36	5	178243278	178243278	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058230	exon5	c.G1219T	p.E407X	.	.	.
ZFP2	80108	broad.mit.edu	36	5	178291775	178291775	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030613	exon5	c.T855C	p.L285L	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178324295	178324295	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182594	exon5	c.C284A	p.T95N	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178324654	178324654	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182594	exon5	c.A643C	p.R215R	.	.	.
ZNF454	285676	broad.mit.edu	36	5	178325017	178325017	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182594	exon5	c.G1006A	p.A336T	.	.	.
HNRNPH1	3187	broad.mit.edu	36	5	178977232	178977232	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005520	exon9	c.A946C	p.R316R	.	.	.
RNF130	55819	broad.mit.edu	36	5	179372678	179372678	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018434	exon3	c.G682A	p.D228N	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179672130	179672130	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005110	exon15	c.C1452A	p.I484I	.	.	.
CNOT6	57472	broad.mit.edu	36	5	179925550	179925550	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015455	exon7	c.C684A	p.I228I	.	.	.
OR2Y1	134083	broad.mit.edu	36	5	180099284	180099284	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001657	exon1	c.T381C	p.C127C	.	.	.
TRIM7	81786	broad.mit.edu	36	5	180558723	180558723	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203293	exon4	c.G850A	p.E284K	.	.	.
TRIM41	90933	broad.mit.edu	36	5	180594547	180594547	+	3'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201627	exon7	c.G1477T	p.E493X	.	.	.
CDH18	1016	broad.mit.edu	36	5	19607519	19607519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004934	exon8	c.C1179T	p.Y393Y	.	.	.
CDH18	1016	broad.mit.edu	36	5	19607650	19607650	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004934	exon8	c.G1048A	p.A350T	.	.	.
PLEKHG4B	153478	broad.mit.edu	36	5	209195	209195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052909	exon8	c.G1150A	p.E384K	.	.	.
CDH12	1010	broad.mit.edu	36	5	21852906	21852906	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004061	exon9	c.G907T	p.E303X	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23556931	23556931	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon6	c.G394T	p.E132X	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23558198	23558198	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon7	c.G537T	p.K179N	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23562598	23562598	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.G1644T	p.G548G	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23563292	23563292	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.G2338T	p.E780X	.	.	.
CDH10	1008	broad.mit.edu	36	5	24541052	24541052	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon8	c.C1319A	p.S440Y	.	.	.
CDH10	1008	broad.mit.edu	36	5	24545643	24545643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon7	c.G1045A	p.E349K	.	.	.
CDH10	1008	broad.mit.edu	36	5	24571672	24571672	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006727	exon4	c.A543C	p.Q181H	.	.	.
CDH10	1008	broad.mit.edu	36	5	24629339	24629339	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon2	c.T18A	p.F6L	.	.	.
CCDC127	133957	broad.mit.edu	36	5	258710	258710	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145265	exon3	c.T485C	p.F162S	.	.	.
CDH9	1007	broad.mit.edu	36	5	26921509	26921509	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon11	c.C1853T	p.A618V	.	.	.
CDH9	1007	broad.mit.edu	36	5	26925814	26925814	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon9	c.A1400C	p.K467T	.	.	.
CDH9	1007	broad.mit.edu	36	5	26938558	26938558	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon7	c.G1037A	p.R346K	.	.	.
CDH9	1007	broad.mit.edu	36	5	26941907	26941907	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016279	exon5	c.C729A	p.G243G	.	.	.
SDHA	6389	broad.mit.edu	36	5	286687	286687	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004168	exon8	c.G991A	p.A331T	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31437397	31437397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon35	c.C4024T	p.R1342W	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31473157	31473157	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon23	c.A2888G	p.N963S	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31546919	31546919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon8	c.C1412T	p.T471M	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31551040	31551040	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon7	c.G1102T	p.E368X	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32125738	32125738	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon19	c.C6427A	p.H2143N	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32128871	32128871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon20	c.C7829T	p.A2610V	.	.	.
MTMR12	54545	broad.mit.edu	36	5	32304608	32304608	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040446	exon6	c.G539A	p.R180Q	.	.	.
NPR3	4883	broad.mit.edu	36	5	32760574	32760574	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000908	exon2	c.T783A	p.C261X	.	.	.
NPR3	4883	broad.mit.edu	36	5	32822123	32822123	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000908	exon8	c.G1538T	p.R513M	.	.	.
C5orf23	79614	broad.mit.edu	36	5	32825630	32825630	+	Nonstop_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024563	exon1	c.G366T	p.X122Y	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33563073	33563073	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030955	exon24	c.C4762T	p.L1588F	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33570786	33570786	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030955	exon23	c.A4515C	p.K1505N	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33585212	33585212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030955	exon21	c.C4159T	p.R1387C	.	.	.
C1QTNF3	114899	broad.mit.edu	36	5	34056525	34056525	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181435	exon6	c.C880T	p.R294X	.	.	.
RAI14	26064	broad.mit.edu	36	5	34847718	34847718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145521	exon10	c.C647T	p.S216F	.	.	.
RAI14	26064	broad.mit.edu	36	5	34847794	34847794	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145521	exon10	c.C723A	p.I241I	.	.	.
TTC23L	153657	broad.mit.edu	36	5	34886074	34886074	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144725	exon4	c.C283T	p.R95X	.	.	.
BRIX1	55299	broad.mit.edu	36	5	34960762	34960762	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018321	exon9	c.T717C	p.N239N	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35039713	35039713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031900	exon13	c.G1349A	p.R450Q	.	.	.
AGXT2	64902	broad.mit.edu	36	5	35069392	35069392	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031900	exon6	c.C605A	p.P202H	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35703103	35703103	+	Missense_Mutation	SNP	G	A	A	rs34852821	byCluster;byFrequency;by1000genomes	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024867	exon9	c.G1340A	p.R447Q	.	.	.
SPEF2	79925	broad.mit.edu	36	5	35727104	35727104	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024867	exon11	c.C1733T	p.S578F	.	.	.
UGT3A1	133688	broad.mit.edu	36	5	36027036	36027036	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152404	exon1	c.G64A	p.A22T	.	.	.
UGT3A2	167127	broad.mit.edu	36	5	36073697	36073697	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168316	exon5	c.G1152T	p.E384D	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36150940	36150940	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007527	exon12	c.C1476A	p.F492L	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37021539	37021539	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon10	c.C2500T	p.R834X	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37093096	37093096	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015384	exon43	c.C7315T	p.P2439S	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37143523	37143523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon52	c.G9532A	p.E3178K	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37194166	37194166	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon39	c.G7729T	p.D2577Y	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38442079	38442079	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152403	exon7	c.T807A	p.D269E	.	.	.
LIFR	3977	broad.mit.edu	36	5	38517674	38517674	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127671	exon20	c.C3074A	p.T1025N	.	.	.
LIFR	3977	broad.mit.edu	36	5	38546359	38546359	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127671	exon7	c.G955A	p.E319K	.	.	.
LIFR	3977	broad.mit.edu	36	5	38563111	38563111	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127671	exon4	c.T300C	p.I100I	.	.	.
OSMR	9180	broad.mit.edu	36	5	38919771	38919771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003999	exon5	c.C504T	p.Y168Y	.	.	.
RICTOR	253260	broad.mit.edu	36	5	38986446	38986446	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon31	c.C3261A	p.F1087L	.	.	.
RICTOR	253260	broad.mit.edu	36	5	39003061	39003061	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon14	c.G1177A	p.A393T	.	.	.
FYB	2533	broad.mit.edu	36	5	39174520	39174520	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199335	exon6	c.G1390T	p.D464Y	.	.	.
DAB2	1601	broad.mit.edu	36	5	39430170	39430170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001343	exon2	c.G10A	p.E4K	.	.	.
CARD6	84674	broad.mit.edu	36	5	40888567	40888567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032587	exon3	c.G1376A	p.R459H	.	.	.
CARD6	84674	broad.mit.edu	36	5	40889966	40889966	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032587	exon3	c.A2775G	p.S925S	.	.	.
C7	730	broad.mit.edu	36	5	40997995	40997995	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000587	exon13	c.T1713C	p.C571C	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41036203	41036203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon39	c.G4358A	p.R1453H	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41043288	41043288	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon34	c.T3634G	p.L1212V	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41054225	41054225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon27	c.C2738T	p.A913V	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41068963	41068963	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon23	c.C2298T	p.V766V	.	.	.
HEATR7B2	133558	broad.mit.edu	36	5	41085181	41085181	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173489	exon14	c.A1459G	p.S487G	.	.	.
C6	729	broad.mit.edu	36	5	41195046	41195046	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000065	exon12	c.C1751T	p.S584L	.	.	.
C6	729	broad.mit.edu	36	5	41231742	41231742	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000065	exon5	c.G496T	p.D166Y	.	.	.
PLCXD3	345557	broad.mit.edu	36	5	41417918	41417918	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005473	exon2	c.C579A	p.V193V	.	.	.
PLCXD3	345557	broad.mit.edu	36	5	41418390	41418390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005473	exon2	c.C107A	p.S36Y	.	.	.
C5orf51	285636	broad.mit.edu	36	5	41953113	41953113	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175921	exon6	c.G840A	p.T280T	.	.	.
GHR	2690	broad.mit.edu	36	5	42735788	42735788	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000163	exon6	c.A545C	p.D182A	.	.	.
GHR	2690	broad.mit.edu	36	5	42753975	42753975	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000163	exon9	c.C940A	p.L314I	.	.	.
GHR	2690	broad.mit.edu	36	5	42754633	42754633	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000163	exon10	c.C1267A	p.L423I	.	.	.
HCN1	348980	broad.mit.edu	36	5	45297897	45297897	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021072	exon8	c.G2556A	p.P852P	.	.	.
PARP8	79668	broad.mit.edu	36	5	50091900	50091900	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178055	exon6	c.G292T	p.D98Y	.	.	.
PARP8	79668	broad.mit.edu	36	5	50126886	50126886	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178055	exon13	c.G1306A	p.A436T	.	.	.
PARP8	79668	broad.mit.edu	36	5	50152811	50152811	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178055	exon17	c.A1676G	p.D559G	.	.	.
ISL1	3670	broad.mit.edu	36	5	50716300	50716300	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002202	exon2	c.A197G	p.Y66C	.	.	.
ITGA1	3672	broad.mit.edu	36	5	52271473	52271473	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181501	exon26	c.C3227A	p.S1076Y	.	.	.
ITGA2	3673	broad.mit.edu	36	5	52413278	52413278	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002203	exon26	c.G3139T	p.E1047X	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5292964	5292964	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139056	exon16	c.G2449A	p.D817N	.	.	.
HSPB3	8988	broad.mit.edu	36	5	53787570	53787570	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006308	exon1	c.G194A	p.R65Q	.	.	.
GZMK	3003	broad.mit.edu	36	5	54356281	54356281	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002104	exon2	c.C101T	p.S34L	.	.	.
GZMK	3003	broad.mit.edu	36	5	54356391	54356391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002104	exon2	c.C211T	p.R71W	.	.	.
GZMK	3003	broad.mit.edu	36	5	54363117	54363117	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002104	exon4	c.C532T	p.R178X	.	.	.
DHX29	54505	broad.mit.edu	36	5	54606214	54606214	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019030	exon16	c.G2675A	p.R892K	.	.	.
KIAA0947	23379	broad.mit.edu	36	5	5500605	5500605	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015325	exon8	c.G490A	p.E164K	.	.	.
DDX4	54514	broad.mit.edu	36	5	55112671	55112671	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024415	exon9	c.G517A	p.E173K	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55203907	55203907	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139017	exon4	c.A325C	p.N109H	.	.	.
ANKRD55	79722	broad.mit.edu	36	5	55443083	55443083	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024669	exon10	c.C1249A	p.L417I	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56197528	56197528	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon6	c.C1268A	p.S423X	.	.	.
MAP3K1	4214	broad.mit.edu	36	5	56225184	56225184	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005921	exon20	c.C4459T	p.R1487C	.	.	.
MIER3	166968	broad.mit.edu	36	5	56278595	56278595	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152622	exon3	c.A95C	p.D32A	.	.	.
KIF2A	3796	broad.mit.edu	36	5	61717080	61717080	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004520	exon20	c.C2048A	p.S683Y	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292424	63292424	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000524	exon1	c.C879T	p.I293I	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292919	63292919	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000524	exon1	c.C384T	p.C128C	.	.	.
CWC27	10283	broad.mit.edu	36	5	64115513	64115513	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005869	exon4	c.C347G	p.T116R	.	.	.
ADAMTS6	11174	broad.mit.edu	36	5	64557757	64557757	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197941	exon16	c.A1979C	p.N660T	.	.	.
CENPK	64105	broad.mit.edu	36	5	64853099	64853099	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022145	exon10	c.G610T	p.E204X	.	.	.
PPWD1	23398	broad.mit.edu	36	5	64901303	64901303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015342	exon3	c.C388T	p.R130C	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65385006	65385006	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018695	exon21	c.T2104G	p.F702V	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65386276	65386276	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018695	exon21	c.G3374T	p.R1125I	.	.	.
CD180	4064	broad.mit.edu	36	5	66515876	66515876	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005582	exon3	c.C551A	p.A184D	.	.	.
CD180	4064	broad.mit.edu	36	5	66517502	66517502	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005582	exon2	c.T190A	p.F64I	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67624707	67624707	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181523	exon8	c.C1042T	p.R348X	.	.	.
CCDC125	202243	broad.mit.edu	36	5	68614371	68614371	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176816	exon11	c.G1477T	p.D493Y	.	.	.
CCDC125	202243	broad.mit.edu	36	5	68652049	68652049	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176816	exon1	c.A75C	p.E25D	.	.	.
RAD17	5884	broad.mit.edu	36	5	68717782	68717782	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133344	exon8	c.C718T	p.R240X	.	.	.
BDP1	55814	broad.mit.edu	36	5	70834341	70834341	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018429	exon15	c.G2208A	p.E736E	.	.	.
BDP1	55814	broad.mit.edu	36	5	70841616	70841616	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018429	exon17	c.G2941T	p.D981Y	.	.	.
BDP1	55814	broad.mit.edu	36	5	70842270	70842270	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018429	exon17	c.G3595T	p.D1199Y	.	.	.
BDP1	55814	broad.mit.edu	36	5	70854423	70854423	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018429	exon24	c.G5278T	p.D1760Y	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71518272	71518272	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon4	c.G445T	p.E149X	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71526484	71526484	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.G1546A	p.A516T	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71527477	71527477	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.G2539T	p.E847X	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71529643	71529643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.G4705A	p.D1569N	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71531036	71531036	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.G6098A	p.R2033Q	.	.	.
MRPS27	23107	broad.mit.edu	36	5	71645735	71645735	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015084	exon2	c.G80T	p.R27I	.	.	.
PTCD2	79810	broad.mit.edu	36	5	71652014	71652014	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024754	exon1	c.C49A	p.L17I	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72221484	72221484	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153188	exon14	c.C1621A	p.L541I	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72322179	72322179	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138782	exon4	c.G319T	p.E107X	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72348804	72348804	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138782	exon8	c.G709T	p.E237X	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72413370	72413370	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138782	exon23	c.C1985A	p.S662X	.	.	.
ANKRA2	57763	broad.mit.edu	36	5	72892736	72892736	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023039	exon3	c.C423A	p.V141V	.	.	.
UTP15	84135	broad.mit.edu	36	5	72898955	72898955	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032175	exon2	c.G30T	p.Q10H	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73189785	73189785	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177693	exon16	c.T2032C	p.S678P	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73217481	73217481	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177693	exon25	c.G3106T	p.D1036Y	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73235818	73235818	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177693	exon32	c.T4090G	p.F1364V	.	.	.
ENC1	8507	broad.mit.edu	36	5	73966392	73966392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003633	exon2	c.G1675A	p.D559N	.	.	.
HMGCR	3156	broad.mit.edu	36	5	74675887	74675887	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000859	exon4	c.C339A	p.F113L	.	.	.
POLK	51426	broad.mit.edu	36	5	74929332	74929332	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016218	exon14	c.C2490A	p.S830R	.	.	.
POC5	134359	broad.mit.edu	36	5	75026372	75026372	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099271	exon6	c.T554G	p.F185C	.	.	.
F2RL2	2151	broad.mit.edu	36	5	75949411	75949411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004101	exon2	c.G877A	p.D293N	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76657310	76657310	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029853	exon2	c.G530T	p.R177M	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76744792	76744792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029853	exon16	c.G1753A	p.E585K	.	.	.
PDE8B	8622	broad.mit.edu	36	5	76757412	76757412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029853	exon20	c.G2423A	p.S808N	.	.	.
OTP	23440	broad.mit.edu	36	5	76968579	76968579	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032109	exon2	c.G270A	p.P90P	.	.	.
ADCY2	108	broad.mit.edu	36	5	7748883	7748883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon6	c.C888T	p.I296I	.	.	.
ARSB	411	broad.mit.edu	36	5	78112143	78112143	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000046	exon8	c.C1435T	p.R479W	.	.	.
ADCY2	108	broad.mit.edu	36	5	7826058	7826058	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon18	c.G2228A	p.S743N	.	.	.
ARSB	411	broad.mit.edu	36	5	78296167	78296167	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198709	exon4	c.A518G	p.E173G	.	.	.
ADCY2	108	broad.mit.edu	36	5	7842868	7842868	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon20	c.C2583T	p.P861P	.	.	.
BHMT	635	broad.mit.edu	36	5	78450947	78450947	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001713	exon3	c.G276A	p.E92E	.	.	.
HOMER1	9456	broad.mit.edu	36	5	78782692	78782692	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004272	exon3	c.A171T	p.I57I	.	.	.
PAPD4	167153	broad.mit.edu	36	5	78972506	78972506	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114394	exon5	c.G542A	p.R181Q	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79067780	79067780	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.C7436A	p.S2479Y	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79070849	79070849	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.A10505C	p.K3502T	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79084306	79084306	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon6	c.G11043A	p.A3681A	.	.	.
FASTKD3	79072	broad.mit.edu	36	5	7920578	7920578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024091	exon2	c.C619T	p.R207C	.	.	.
MTX3	345778	broad.mit.edu	36	5	79318529	79318529	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010891	exon7	c.G739T	p.D247Y	.	.	.
THBS4	7060	broad.mit.edu	36	5	79371699	79371699	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003248	exon2	c.C132T	p.G44G	.	.	.
THBS4	7060	broad.mit.edu	36	5	79410723	79410723	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003248	exon19	c.C2397A	p.I799I	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79788119	79788119	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014733	exon12	c.A3774G	p.I1258M	.	.	.
MSH3	4437	broad.mit.edu	36	5	80003832	80003832	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002439	exon5	c.A806G	p.E269G	.	.	.
MSH3	4437	broad.mit.edu	36	5	80107286	80107286	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002439	exon16	c.G2271T	p.K757N	.	.	.
RASGRF2	5924	broad.mit.edu	36	5	80532965	80532965	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006909	exon19	c.C2854T	p.R952X	.	.	.
CKMT2	1160	broad.mit.edu	36	5	80589323	80589323	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001825	exon8	c.G771A	p.K257K	.	.	.
ZCCHC9	84240	broad.mit.edu	36	5	80636528	80636528	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001131036	exon2	c.G196T	p.E66X	.	.	.
ATG10	83734	broad.mit.edu	36	5	81510106	81510106	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031482	exon5	c.C397A	p.H133N	.	.	.
ATP6AP1L	92270	broad.mit.edu	36	5	81649623	81649623	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017971	exon4	c.C423T	p.C141C	.	.	.
VCAN	1462	broad.mit.edu	36	5	82851295	82851295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164098	exon7	c.G1414A	p.D472N	.	.	.
VCAN	1462	broad.mit.edu	36	5	82852128	82852128	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164098	exon7	c.C2247T	p.F749F	.	.	.
VCAN	1462	broad.mit.edu	36	5	82852460	82852460	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164098	exon7	c.G2579T	p.S860I	.	.	.
VCAN	1462	broad.mit.edu	36	5	82869865	82869865	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004385	exon8	c.A5287G	p.T1763A	.	.	.
VCAN	1462	broad.mit.edu	36	5	82871433	82871433	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004385	exon8	c.C6855A	p.P2285P	.	.	.
VCAN	1462	broad.mit.edu	36	5	82871530	82871530	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004385	exon8	c.A6952G	p.T2318A	.	.	.
VCAN	1462	broad.mit.edu	36	5	82872106	82872106	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004385	exon8	c.G7528T	p.V2510L	.	.	.
VCAN	1462	broad.mit.edu	36	5	82872273	82872273	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004385	exon8	c.A7695C	p.E2565D	.	.	.
VCAN	1462	broad.mit.edu	36	5	82885005	82885005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126336	exon9	c.G1337A	p.R446Q	.	.	.
EDIL3	10085	broad.mit.edu	36	5	83275096	83275096	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005711	exon11	c.C1341T	p.I447I	.	.	.
RASA1	5921	broad.mit.edu	36	5	86600435	86600435	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002890	exon1	c.G411A	p.L137L	.	.	.
RASA1	5921	broad.mit.edu	36	5	86600461	86600461	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002890	exon1	c.T437C	p.L146S	.	.	.
RASA1	5921	broad.mit.edu	36	5	86695019	86695019	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002890	exon11	c.G1552T	p.G518X	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88054401	88054401	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193350	exon11	c.G1198T	p.D400Y	.	.	.
MEF2C	4208	broad.mit.edu	36	5	88083453	88083453	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193350	exon5	c.G566A	p.R189Q	.	.	.
GPR98	84059	broad.mit.edu	36	5	90051779	90051779	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon44	c.C9606A	p.I3202I	.	.	.
GPR98	84059	broad.mit.edu	36	5	90108046	90108046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon61	c.C12424T	p.R4142W	.	.	.
GPR98	84059	broad.mit.edu	36	5	90180273	90180273	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon79	c.C17083A	p.L5695I	.	.	.
SEMA5A	9037	broad.mit.edu	36	5	9390844	9390844	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003966	exon4	c.G205T	p.E69X	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94314694	94314694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024717	exon3	c.G966T	p.E322D	.	.	.
MCTP1	79772	broad.mit.edu	36	5	94314790	94314790	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024717	exon3	c.C870T	p.I290I	.	.	.
FAM81B	153643	broad.mit.edu	36	5	94790150	94790150	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152548	exon6	c.C744T	p.F248F	.	.	.
TTC37	9652	broad.mit.edu	36	5	94846297	94846297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014639	exon38	c.G3940A	p.E1314K	.	.	.
SPATA9	83890	broad.mit.edu	36	5	95025421	95025421	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031952	exon4	c.A466C	p.I156L	.	.	.
ELL2	22936	broad.mit.edu	36	5	95280889	95280889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012081	exon3	c.C312T	p.F104F	.	.	.
PCSK1	5122	broad.mit.edu	36	5	95784823	95784823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177875	exon4	c.G352A	p.V118I	.	.	.
ERAP1	51752	broad.mit.edu	36	5	96164869	96164869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040458	exon2	c.G517A	p.E173K	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96383766	96383766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005575	exon14	c.G2383A	p.V795I	.	.	.
LIX1	167410	broad.mit.edu	36	5	96486000	96486000	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153234	exon2	c.T172C	p.S58P	.	.	.
FAM174A	345757	broad.mit.edu	36	5	99925686	99925686	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198507	exon2	c.G464T	p.R155I	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101802371	101802371	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PJA2	9867	broad.mit.edu	36	5	108742855	108742855	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11041364	11041364	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CAMK4	814	broad.mit.edu	36	5	110740447	110740447	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DTWD2	285605	broad.mit.edu	36	5	118338183	118338183	+	RNA	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DMXL1	1657	broad.mit.edu	36	5	118507424	118507424	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
P4HA2	8974	broad.mit.edu	36	5	131567440	131567440	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HSPA4	3308	broad.mit.edu	36	5	132467627	132467627	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FSTL4	23105	broad.mit.edu	36	5	132930821	132930821	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SMAD5	4090	broad.mit.edu	36	5	135526986	135526986	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDC23	8697	broad.mit.edu	36	5	137556090	137556090	+	Splice_Site	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDC23	8697	broad.mit.edu	36	5	137565696	137565696	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137920188	137920188	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13929927	13929927	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HARS	3035	broad.mit.edu	36	5	140050616	140050616	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PCDHGB7	56099	broad.mit.edu	36	5	140780046	140780046	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141025135	141025135	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LARS	51520	broad.mit.edu	36	5	145499952	145499952	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ABLIM3	22885	broad.mit.edu	36	5	148558164	148558164	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TCOF1	6949	broad.mit.edu	36	5	149756026	149756026	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EBF1	1879	broad.mit.edu	36	5	158058694	158058694	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTC1	7265	broad.mit.edu	36	5	159402710	159402710	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PTTG1	9232	broad.mit.edu	36	5	159782000	159782000	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	5	161111092	161111092	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GABRA1	2554	broad.mit.edu	36	5	161210394	161210394	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GABRG2	2566	broad.mit.edu	36	5	161511994	161511994	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PANK3	79646	broad.mit.edu	36	5	167918752	167918752	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYO10	4651	broad.mit.edu	36	5	16816666	16816666	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169428713	169428713	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C5orf25	375484	broad.mit.edu	36	5	175649308	175649308	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C5orf25	375484	broad.mit.edu	36	5	175650364	175650364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C5orf45	51149	broad.mit.edu	36	5	179201502	179201502	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RASGEF1C	255426	broad.mit.edu	36	5	179461757	179461757	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MAPK9	5601	broad.mit.edu	36	5	179624446	179624446	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BTNL8	79908	broad.mit.edu	36	5	180342043	180342043	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CDH18	1016	broad.mit.edu	36	5	19509591	19509591	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23544973	23544973	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CDH9	1007	broad.mit.edu	36	5	26941824	26941824	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TARS	6897	broad.mit.edu	36	5	33490798	33490798	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33563240	33563240	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RAI14	26064	broad.mit.edu	36	5	34846867	34846867	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CAPSL	133690	broad.mit.edu	36	5	35946224	35946224	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	5	37851506	37851506	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EGFLAM	133584	broad.mit.edu	36	5	38498881	38498881	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OXCT1	5019	broad.mit.edu	36	5	41830615	41830615	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PAIP1	10605	broad.mit.edu	36	5	43591867	43591867	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ITGA1	3672	broad.mit.edu	36	5	52241738	52241738	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HSPB3	8988	broad.mit.edu	36	5	53787833	53787833	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GZMK	3003	broad.mit.edu	36	5	54362009	54362009	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IL31RA	133396	broad.mit.edu	36	5	55231728	55231728	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C5orf35	133383	broad.mit.edu	36	5	56243131	56243131	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PDE4D	5144	broad.mit.edu	36	5	59035284	59035284	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	5	62108566	62108566	+	IGR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RGS7BP	401190	broad.mit.edu	36	5	63930026	63930026	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ERBB2IP	55914	broad.mit.edu	36	5	65354960	65354960	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RAD17	5884	broad.mit.edu	36	5	68723606	68723606	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OCLN	4950	broad.mit.edu	36	5	70405841	70405841	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MCCC2	64087	broad.mit.edu	36	5	70935928	70935928	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72231578	72231578	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73163911	73163911	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73204832	73204832	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RGNEF	64283	broad.mit.edu	36	5	73243168	73243168	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TBCA	6902	broad.mit.edu	36	5	77039821	77039821	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77513086	77513086	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77626024	77626024	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
THBS4	7060	broad.mit.edu	36	5	79391494	79391494	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZFYVE16	9765	broad.mit.edu	36	5	79776834	79776834	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
XRCC4	7518	broad.mit.edu	36	5	82535126	82535126	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GPR98	84059	broad.mit.edu	36	5	90172566	90172566	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TTC37	9652	broad.mit.edu	36	5	94831233	94831233	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MUT	4594	broad.mit.edu	36	6	49533571	49533572	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000255	exon3	c.545_546insA	p.M182fs	.	.	.
C6orf48	50854	broad.mit.edu	36	6	31915401	31915401	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040438	exon4	c.210delA	p.G70fs	.	.	.
MCHR2	84539	broad.mit.edu	36	6	100475766	100475766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040179	exon6	c.C794T	p.A265V	.	.	.
SIM1	6492	broad.mit.edu	36	6	100945299	100945299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon11	c.G1960A	p.A654T	.	.	.
SIM1	6492	broad.mit.edu	36	6	101003216	101003216	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon6	c.C603T	p.F201F	.	.	.
SIM1	6492	broad.mit.edu	36	6	101003992	101003992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon5	c.C511T	p.R171C	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102231298	102231298	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175768	exon4	c.G649T	p.E217X	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102444280	102444280	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175768	exon11	c.T1597G	p.F533V	.	.	.
GRIK2	2898	broad.mit.edu	36	6	102444415	102444415	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175768	exon11	c.C1732A	p.L578I	.	.	.
TFAP2A	7020	broad.mit.edu	36	6	10512861	10512861	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003220	exon4	c.C630A	p.V210V	.	.	.
HACE1	57531	broad.mit.edu	36	6	105326583	105326583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020771	exon18	c.C1924T	p.R642W	.	.	.
HACE1	57531	broad.mit.edu	36	6	105351280	105351280	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020771	exon9	c.G759A	p.P253P	.	.	.
POPDC3	64208	broad.mit.edu	36	6	105716470	105716470	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022361	exon2	c.G8T	p.R3I	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10665073	10665073	+	Missense_Mutation	SNP	G	A	A	rs56343921	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001491	exon1	c.G431A	p.C144Y	.	.	.
QRSL1	55278	broad.mit.edu	36	6	107206896	107206896	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018292	exon6	c.C677T	p.S226L	.	.	.
C6orf203	51250	broad.mit.edu	36	6	107468079	107468079	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142470	exon3	c.C437A	p.S146Y	.	.	.
SCML4	256380	broad.mit.edu	36	6	108177704	108177704	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198081	exon3	c.T163C	p.S55P	.	.	.
SEC63	11231	broad.mit.edu	36	6	108299666	108299666	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007214	exon21	c.G2218T	p.E740X	.	.	.
SEC63	11231	broad.mit.edu	36	6	108300716	108300716	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007214	exon20	c.A2128C	p.K710Q	.	.	.
NR2E1	7101	broad.mit.edu	36	6	108615357	108615357	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003269	exon9	c.C1155A	p.I385I	.	.	.
LACE1	246269	broad.mit.edu	36	6	108947596	108947596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145315	exon12	c.C1207T	p.R403C	.	.	.
SESN1	27244	broad.mit.edu	36	6	109430226	109430226	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014454	exon2	c.G293T	p.R98I	.	.	.
GCM2	9247	broad.mit.edu	36	6	10982499	10982499	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004752	exon5	c.G1236A	p.S412S	.	.	.
GCM2	9247	broad.mit.edu	36	6	10985502	10985502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004752	exon2	c.G200A	p.R67H	.	.	.
PPIL6	285755	broad.mit.edu	36	6	109864038	109864038	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111298	exon2	c.G193T	p.E65X	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109894022	109894022	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014797	exon7	c.C1819A	p.L607I	.	.	.
ZBTB24	9841	broad.mit.edu	36	6	109909081	109909081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164313	exon2	c.G842A	p.R281K	.	.	.
AKD1	221264	broad.mit.edu	36	6	110099891	110099891	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145025	exon5	c.C255T	p.S85S	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11011153	11011153	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040274	exon8	c.C612T	p.F204F	.	.	.
GPR6	2830	broad.mit.edu	36	6	110408071	110408071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005284	exon1	c.C1063T	p.R355C	.	.	.
DDO	8528	broad.mit.edu	36	6	110820967	110820967	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004032	exon4	c.C637A	p.L213M	.	.	.
GTF3C6	112495	broad.mit.edu	36	6	111390392	111390392	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138408	exon5	c.G352T	p.E118X	.	.	.
KIAA1919	91749	broad.mit.edu	36	6	111694554	111694554	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153369	exon4	c.G1096T	p.E366X	.	.	.
REV3L	5980	broad.mit.edu	36	6	111795856	111795856	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon14	c.A5828G	p.D1943G	.	.	.
REV3L	5980	broad.mit.edu	36	6	111801312	111801312	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon13	c.T4939G	p.F1647V	.	.	.
REV3L	5980	broad.mit.edu	36	6	111815919	111815919	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon8	c.C925A	p.L309I	.	.	.
ERVFRDE1	405754	broad.mit.edu	36	6	11212922	11212922	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207582	exon2	c.G608A	p.R203Q	.	.	.
FYN	2534	broad.mit.edu	36	6	112130862	112130862	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153048	exon6	c.C616T	p.R206C	.	.	.
TUBE1	51175	broad.mit.edu	36	6	112512105	112512105	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016262	exon4	c.A190C	p.I64L	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112542079	112542079	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105206	exon38	c.C5219A	p.S1740Y	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11300659	11300659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006403	exon4	c.G568A	p.D190N	.	.	.
HDAC2	3066	broad.mit.edu	36	6	114371361	114371361	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001527	exon12	c.C1225T	p.R409X	 HDAC2,skin,NS,Substitution - Nonsense,0 	.	.
HS3ST5	222537	broad.mit.edu	36	6	114485247	114485247	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153612	exon2	c.A908C	p.K303T	.	.	.
NT5DC1	221294	broad.mit.edu	36	6	116545789	116545789	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152729	exon6	c.T517C	p.S173P	.	.	.
DSE	29940	broad.mit.edu	36	6	116854545	116854545	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013352	exon3	c.C532A	p.L178I	.	.	.
FAM26E	254228	broad.mit.edu	36	6	116939948	116939948	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153711	exon1	c.G396A	p.T132T	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117055940	117055940	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161664	exon3	c.G1377T	p.K459N	.	.	.
FAM162B	221303	broad.mit.edu	36	6	117189866	117189866	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085480	exon3	c.C357T	p.I119I	.	.	.
RFX6	222546	broad.mit.edu	36	6	117352543	117352543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon15	c.G1574A	p.R525Q	.	.	.
ROS1	6098	broad.mit.edu	36	6	117716541	117716541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon43	c.G6851A	p.G2284D	.	.	.
ROS1	6098	broad.mit.edu	36	6	117747774	117747774	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon36	c.G5890A	p.A1964T	.	.	.
ROS1	6098	broad.mit.edu	36	6	117787681	117787681	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002944	exon23	c.A3632C	p.N1211T	.	.	.
SLC35F1	222553	broad.mit.edu	36	6	118742036	118742036	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029858	exon8	c.G1155T	p.Q385H	.	.	.
C6orf105	84830	broad.mit.edu	36	6	11886840	11886840	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143948	exon1	c.A139C	p.T47P	.	.	.
C6orf204	387119	broad.mit.edu	36	6	119060462	119060462	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042475	exon2	c.G79T	p.D27Y	.	.	.
MCM9	254394	broad.mit.edu	36	6	119274592	119274592	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153255	exon7	c.A1072G	p.K358E	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119343113	119343113	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024581	exon10	c.G2190A	p.T730T	.	.	.
FAM184A	79632	broad.mit.edu	36	6	119387455	119387455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024581	exon2	c.G382A	p.E128K	.	.	.
HIVEP1	3096	broad.mit.edu	36	6	12123855	12123855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002114	exon2	c.G8A	p.R3Q	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121646728	121646728	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152730	exon13	c.T1400C	p.V467A	.	.	.
C6orf170	221322	broad.mit.edu	36	6	121697134	121697134	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152730	exon1	c.G142T	p.E48X	.	.	.
RNF217	154214	broad.mit.edu	36	6	125445721	125445721	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152553	exon9	c.T807G	p.I269M	.	.	.
TPD52L1	7164	broad.mit.edu	36	6	125620003	125620003	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003287	exon6	c.G486T	p.K162N	.	.	.
HDDC2	51020	broad.mit.edu	36	6	125640019	125640019	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016063	exon5	c.C445A	p.L149I	.	.	.
RNF146	81847	broad.mit.edu	36	6	127649953	127649953	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030963	exon5	c.C499T	p.R167X	.	.	.
ECHDC1	55862	broad.mit.edu	36	6	127679294	127679294	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002030	exon4	c.T410G	p.F137C	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127810320	127810320	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014702	exon5	c.C837T	p.S279S	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127839245	127839245	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon6	c.G1619T	p.R540I	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128176751	128176751	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164685	exon4	c.G728A	p.R243H	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128192463	128192463	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164685	exon3	c.T560G	p.I187S	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129511918	129511918	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon7	c.T1011C	p.T337T	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129553070	129553070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon11	c.C1495T	p.R499C	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129756052	129756052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon37	c.C5404T	p.R1802C	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129764085	129764085	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon38	c.C5469T	p.S1823S	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129865512	129865512	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon58	c.G8248T	p.E2750X	.	.	.
L3MBTL3	84456	broad.mit.edu	36	6	130405604	130405604	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032438	exon3	c.G67T	p.D23Y	.	.	.
SAMD3	154075	broad.mit.edu	36	6	130517664	130517664	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017373	exon9	c.A1022G	p.Q341R	.	.	.
AKAP7	9465	broad.mit.edu	36	6	131531986	131531986	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016377	exon4	c.G403T	p.E135X	.	.	.
AKAP7	9465	broad.mit.edu	36	6	131582638	131582638	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016377	exon6	c.A781G	p.I261V	.	.	.
MED23	9439	broad.mit.edu	36	6	131956941	131956941	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004830	exon23	c.C3223T	p.L1075L	.	.	.
CTGF	1490	broad.mit.edu	36	6	132312226	132312226	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001901	exon5	c.C921T	p.C307C	.	.	.
TAAR6	319100	broad.mit.edu	36	6	132933620	132933620	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175067	exon1	c.C467A	p.S156Y	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132951936	132951936	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003967	exon1	c.C583T	p.L195L	.	.	.
TAAR1	134864	broad.mit.edu	36	6	133008477	133008477	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138327	exon1	c.A359C	p.D120A	.	.	.
VNN1	8876	broad.mit.edu	36	6	133056113	133056113	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004666	exon4	c.T569C	p.V190A	.	.	.
VNN1	8876	broad.mit.edu	36	6	133056962	133056962	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004666	exon3	c.T394C	p.S132P	.	.	.
VNN2	8875	broad.mit.edu	36	6	133118753	133118753	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004665	exon3	c.T459C	p.C153C	.	.	.
EYA4	2070	broad.mit.edu	36	6	133819437	133819437	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172103	exon5	c.G259T	p.A87S	.	.	.
EYA4	2070	broad.mit.edu	36	6	133875761	133875761	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172103	exon15	c.C1324A	p.L442I	.	.	.
SLC2A12	154091	broad.mit.edu	36	6	134353992	134353992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145176	exon5	c.G1848A	p.E616E	.	.	.
SGK1	6446	broad.mit.edu	36	6	134535593	134535593	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143678	exon7	c.C604A	p.L202I	.	.	.
ALDH8A1	64577	broad.mit.edu	36	6	135312869	135312869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170771	exon1	c.G16A	p.A6T	.	.	.
PDE7B	27115	broad.mit.edu	36	6	136541861	136541861	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018945	exon10	c.C837A	p.I279I	.	.	.
FAM54A	113115	broad.mit.edu	36	6	136596295	136596295	+	Missense_Mutation	SNP	C	A	A	rs2274139	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138419	exon7	c.G905T	p.R302I	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136624193	136624193	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077440	exon11	c.G2507T	p.W836L	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136631064	136631064	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077440	exon10	c.G2320T	p.E774X	.	.	.
BCLAF1	9774	broad.mit.edu	36	6	136641132	136641132	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077440	exon4	c.G574T	p.D192Y	.	.	.
MAP7	9053	broad.mit.edu	36	6	136722862	136722862	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198614	exon15	c.C1870T	p.R624X	.	.	.
MAP3K5	4217	broad.mit.edu	36	6	137019264	137019264	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005923	exon10	c.T1554G	p.I518M	.	.	.
HECA	51696	broad.mit.edu	36	6	139529469	139529469	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016217	exon2	c.G627T	p.K209N	.	.	.
RNF182	221687	broad.mit.edu	36	6	14085365	14085365	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165032	exon4	c.T36A	p.S12S	.	.	.
CD83	9308	broad.mit.edu	36	6	14239886	14239886	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004233	exon3	c.A310G	p.T104A	.	.	.
GPR126	57211	broad.mit.edu	36	6	142672400	142672400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032394	exon2	c.G29A	p.S10N	.	.	.
HIVEP2	3097	broad.mit.edu	36	6	143116483	143116483	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006734	exon10	c.C6795T	p.G2265G	.	.	.
AIG1	51390	broad.mit.edu	36	6	143499701	143499701	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016108	exon2	c.A178G	p.T60A	.	.	.
UTRN	7402	broad.mit.edu	36	6	144845133	144845133	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon26	c.G3603T	p.Q1201H	.	.	.
UTRN	7402	broad.mit.edu	36	6	144879770	144879770	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon38	c.A5534C	p.K1845T	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146286566	146286566	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon18	c.G3478T	p.E1160X	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146317800	146317800	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon2	c.G352T	p.E118X	.	.	.
STXBP5	134957	broad.mit.edu	36	6	147726492	147726492	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139244	exon22	c.C2766T	p.C922C	.	.	.
SASH1	23328	broad.mit.edu	36	6	148906963	148906963	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015278	exon18	c.C2664T	p.V888V	.	.	.
ULBP1	80329	broad.mit.edu	36	6	150332150	150332150	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025218	exon3	c.G586T	p.E196X	.	.	.
RAET1L	154064	broad.mit.edu	36	6	150383774	150383774	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130900	exon3	c.C591A	p.F197L	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151372756	151372756	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015440	exon21	c.G2234A	p.R745Q	.	.	.
MTHFD1L	25902	broad.mit.edu	36	6	151397328	151397328	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015440	exon25	c.A2593C	p.I865L	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151713789	151713789	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.G2570T	p.R857M	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714490	151714490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.G3271A	p.D1091N	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151907403	151907403	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025059	exon4	c.G447A	p.K149K	.	.	.
ESR1	2099	broad.mit.edu	36	6	152170765	152170765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122741	exon2	c.G25A	p.A9T	.	.	.
ESR1	2099	broad.mit.edu	36	6	152243578	152243578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122741	exon4	c.G739A	p.E247K	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152517799	152517799	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133650	exon5	c.C536A	p.S179Y	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152564728	152564728	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon42	c.G6641A	p.R2214Q	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152587349	152587349	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon32	c.T5067C	p.A1689A	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152617840	152617840	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon19	c.G2910T	p.E970D	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152632071	152632071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon14	c.C2189T	p.A730V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152679743	152679743	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon2	c.C216T	p.V72V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152688098	152688098	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon80	c.G15258A	p.E5086E	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152694305	152694305	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon77	c.C12995T	p.S4332L	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152696891	152696891	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon76	c.A12526C	p.N4176H	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152715114	152715114	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon70	c.C11276T	p.A3759V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152730122	152730122	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon62	c.C9917T	p.A3306V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152753260	152753260	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon53	c.T8046C	p.G2682G	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152758367	152758367	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon51	c.T7710G	p.F2570L	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152816483	152816483	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon25	c.C2979T	p.T993T	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152824551	152824551	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon21	c.G2289T	p.V763V	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152873193	152873193	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon8	c.G430T	p.E144X	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152873910	152873910	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033071	exon7	c.T352C	p.S118P	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152883299	152883299	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033071	exon5	c.C297T	p.L99L	.	.	.
RGS17	26575	broad.mit.edu	36	6	153389305	153389305	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012419	exon3	c.G186A	p.E62E	.	.	.
RBM16	22828	broad.mit.edu	36	6	155195325	155195325	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014892	exon20	c.G2920T	p.D974Y	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155492840	155492840	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon3	c.A791G	p.E264G	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155493056	155493056	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon3	c.C1007A	p.A336D	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155615779	155615779	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon23	c.G4125A	p.S1375S	.	.	.
NOX3	50508	broad.mit.edu	36	6	155770018	155770018	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015718	exon12	c.G1518T	p.K506N	.	.	.
NOX3	50508	broad.mit.edu	36	6	155806234	155806234	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015718	exon5	c.C351T	p.I117I	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158407505	158407505	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178088	exon11	c.G856A	p.E286K	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158430911	158430911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178088	exon24	c.C2798T	p.T933I	.	.	.
SYTL3	94120	broad.mit.edu	36	6	159086640	159086640	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009991	exon11	c.C792T	p.N264N	.	.	.
RSPH3	83861	broad.mit.edu	36	6	159334894	159334894	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031924	exon2	c.C595T	p.R199X	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159579630	159579630	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon13	c.G4123T	p.D1375Y	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159592542	159592542	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon17	c.G5053T	p.D1685Y	.	.	.
ACAT2	39	broad.mit.edu	36	6	160119744	160119744	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005891	exon9	c.C1087A	p.L363I	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160384295	160384295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon12	c.G1606A	p.A536T	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160391541	160391541	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon19	c.A2561C	p.K854T	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160431083	160431083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon44	c.C6613T	p.R2205W	.	.	.
SLC22A2	6582	broad.mit.edu	36	6	160597674	160597674	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003058	exon2	c.C480A	p.F160L	.	.	.
SLC22A3	6581	broad.mit.edu	36	6	160783788	160783788	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021977	exon8	c.G1294T	p.A432S	.	.	.
LPA	4018	broad.mit.edu	36	6	160886481	160886481	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005577	exon34	c.C5379A	p.Y1793X	.	.	.
LPA	4018	broad.mit.edu	36	6	160886553	160886553	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005577	exon34	c.C5307T	p.Y1769Y	.	.	.
AGPAT4	56895	broad.mit.edu	36	6	161507345	161507345	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020133	exon3	c.C273T	p.I91I	.	.	.
PACRG	135138	broad.mit.edu	36	6	163403303	163403303	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080378	exon4	c.G423T	p.K141N	.	.	.
PACRG	135138	broad.mit.edu	36	6	163655854	163655854	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080378	exon6	c.T619A	p.S207T	.	.	.
QKI	9444	broad.mit.edu	36	6	163796410	163796410	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206855	exon2	c.G252A	p.E84E	.	.	.
QKI	9444	broad.mit.edu	36	6	163903010	163903010	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_206855	exon5	c.G553T	p.G185X	.	.	.
QKI	9444	broad.mit.edu	36	6	163904696	163904696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206855	exon6	c.G889A	p.A297T	.	.	.
QKI	9444	broad.mit.edu	36	6	163905711	163905711	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206854	exon7	c.G957A	p.M319I	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165729894	165729894	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006661	exon15	c.G1293A	p.T431T	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165763796	165763796	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006661	exon10	c.G742A	p.E248K	.	.	.
SFT2D1	113402	broad.mit.edu	36	6	166663712	166663712	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145169	exon2	c.C77A	p.S26X	.	.	.
CCR6	1235	broad.mit.edu	36	6	167469857	167469857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004367	exon3	c.C149T	p.P50L	.	.	.
CCR6	1235	broad.mit.edu	36	6	167470651	167470651	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004367	exon3	c.C943T	p.L315F	.	.	.
UNC93A	54346	broad.mit.edu	36	6	167629625	167629625	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143947	exon3	c.C385T	p.R129C	.	.	.
THBS2	7058	broad.mit.edu	36	6	169365442	169365442	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003247	exon19	c.G2827T	p.D943Y	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390544	169390544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003247	exon4	c.G502A	p.D168N	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390701	169390701	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003247	exon4	c.C345T	p.I115I	.	.	.
THBS2	7058	broad.mit.edu	36	6	169390767	169390767	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003247	exon4	c.C279T	p.D93D	.	.	.
C6orf70	55780	broad.mit.edu	36	6	169921298	169921298	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018341	exon17	c.A1835C	p.E612A	.	.	.
C6orf70	55780	broad.mit.edu	36	6	169923406	169923406	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018341	exon18	c.G1909A	p.E637K	.	.	.
DLL1	28514	broad.mit.edu	36	6	170434258	170434258	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005618	exon9	c.G2034A	p.P678P	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170468986	170468986	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032448	exon2	c.G583A	p.E195K	.	.	.
FAM120B	84498	broad.mit.edu	36	6	170469061	170469061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032448	exon2	c.G658A	p.A220T	.	.	.
TBP	6908	broad.mit.edu	36	6	170712830	170712830	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003194	exon3	c.C81A	p.I27I	.	.	.
FAM8A1	51439	broad.mit.edu	36	6	17716429	17716429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016255	exon5	c.G1122T	p.K374N	.	.	.
NUP153	9972	broad.mit.edu	36	6	17724782	17724782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005124	exon21	c.C4298T	p.S1433L	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17879338	17879338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022113	exon38	c.C4567T	p.R1523C	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17934119	17934119	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105566	exon16	c.C1645T	p.R549X	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17963669	17963669	+	Missense_Mutation	SNP	G	A	A	rs73726225	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105566	exon6	c.C472T	p.R158W	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20217959	20217959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080480	exon12	c.G1210A	p.V404I	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20236922	20236922	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080480	exon6	c.C517T	p.R173X	.	.	.
GMDS	2762	broad.mit.edu	36	6	2062746	2062746	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001500	exon3	c.G191A	p.R64Q	.	.	.
DCDC2	51473	broad.mit.edu	36	6	24313238	24313238	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016356	exon8	c.G994T	p.D332Y	.	.	.
DCDC2	51473	broad.mit.edu	36	6	24386337	24386337	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016356	exon7	c.G841T	p.E281X	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24553797	24553797	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001503	exon20	c.A1976C	p.N659T	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24556090	24556090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001503	exon17	c.G1672A	p.D558N	.	.	.
ALDH5A1	7915	broad.mit.edu	36	6	24628745	24628745	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170740	exon7	c.T1047G	p.T349T	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24677133	24677133	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168376	exon12	c.C1860G	p.G620G	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24709287	24709287	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168375	exon2	c.C24T	p.L8L	.	.	.
GMNN	51053	broad.mit.edu	36	6	24885471	24885471	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015895	exon2	c.G18A	p.K6K	.	.	.
GMNN	51053	broad.mit.edu	36	6	24893985	24893985	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015895	exon7	c.G609A	p.T203T	.	.	.
FAM65B	9750	broad.mit.edu	36	6	24951114	24951114	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014722	exon14	c.T1875C	p.F625F	.	.	.
FAM65B	9750	broad.mit.edu	36	6	24951449	24951449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014722	exon14	c.G1540A	p.A514T	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25558887	25558887	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017640	exon8	c.A583C	p.N195H	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25637089	25637089	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017640	exon24	c.A2056C	p.T686P	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25714326	25714326	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017640	exon35	c.G3693T	p.K1231N	.	.	.
HIST1H2AA	221613	broad.mit.edu	36	6	25834502	25834502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170745	exon1	c.G233A	p.R78H	.	.	.
HIST1H2BA	255626	broad.mit.edu	36	6	25835416	25835416	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170610	exon1	c.C301T	p.R101C	.	.	.
SLC17A1	6568	broad.mit.edu	36	6	25906999	25906999	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005074	exon12	c.G1397A	p.R466H	.	.	.
SLC17A1	6568	broad.mit.edu	36	6	25927337	25927337	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005074	exon6	c.T554C	p.V185A	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26025019	26025019	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005835	exon8	c.C803T	p.A268V	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26031912	26031912	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005835	exon3	c.T230G	p.F77C	.	.	.
TRIM38	10475	broad.mit.edu	36	6	26080294	26080294	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006355	exon5	c.G726T	p.Q242H	.	.	.
TRIM38	10475	broad.mit.edu	36	6	26091557	26091557	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006355	exon8	c.G1061A	p.G354D	.	.	.
HIST1H4C	8364	broad.mit.edu	36	6	26212346	26212346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003542	exon1	c.G192A	p.E64E	.	.	.
HIST1H2BC	8347	broad.mit.edu	36	6	26231918	26231918	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003526	exon1	c.C194A	p.S65Y	.	.	.
MYLK4	340156	broad.mit.edu	36	6	2630591	2630591	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012418	exon6	c.G483A	p.A161A	.	.	.
HIST1H2BI	8346	broad.mit.edu	36	6	26381395	26381395	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003525	exon1	c.C213T	p.F71F	.	.	.
BTN2A2	10385	broad.mit.edu	36	6	26496351	26496351	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006995	exon4	c.G574A	p.A192T	.	.	.
BTN2A2	10385	broad.mit.edu	36	6	26498229	26498229	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006995	exon5	c.G742A	p.A248T	.	.	.
BTN1A1	696	broad.mit.edu	36	6	26617141	26617141	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001732	exon7	c.C1341A	p.F447L	.	.	.
HIST1H2BK	85236	broad.mit.edu	36	6	27222392	27222392	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080593	exon1	c.C165A	p.I55I	.	.	.
PRSS16	10279	broad.mit.edu	36	6	27324915	27324915	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005865	exon4	c.G395T	p.R132I	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27527447	27527447	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007149	exon6	c.C1870T	p.R624X	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27548049	27548049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007149	exon2	c.G4A	p.E2K	.	.	.
HIST1H2BL	8340	broad.mit.edu	36	6	27883311	27883311	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003519	exon1	c.C353T	p.A118V	.	.	.
OR2B2	81697	broad.mit.edu	36	6	27987039	27987039	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033057	exon1	c.A1038C	p.E346D	.	.	.
OR2B6	26212	broad.mit.edu	36	6	28033280	28033280	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012367	exon1	c.C283T	p.R95C	.	.	.
ZNF323	64288	broad.mit.edu	36	6	28405415	28405415	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145909	exon6	c.G25A	p.D9N	.	.	.
GPX6	257202	broad.mit.edu	36	6	28580207	28580207	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182701	exon5	c.C507A	p.L169L	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28651340	28651340	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052923	exon3	c.G1121T	p.R374I	.	.	.
ZNF311	282890	broad.mit.edu	36	6	29071373	29071373	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010877	exon7	c.G1385T	p.R462I	.	.	.
ZNF311	282890	broad.mit.edu	36	6	29071826	29071826	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010877	exon7	c.C932T	p.A311V	.	.	.
OR2W1	26692	broad.mit.edu	36	6	29120730	29120730	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030903	exon1	c.T202G	p.F68V	.	.	.
OR2W1	26692	broad.mit.edu	36	6	29120832	29120832	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030903	exon1	c.T100G	p.F34V	.	.	.
OR2J3	442186	broad.mit.edu	36	6	29188553	29188553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005216	exon1	c.G907A	p.A303T	.	.	.
OR14J1	442191	broad.mit.edu	36	6	29383070	29383070	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030946	exon1	c.T625G	p.L209V	.	.	.
OR14J1	442191	broad.mit.edu	36	6	29383245	29383245	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030946	exon1	c.C800A	p.T267N	.	.	.
OR12D3	81797	broad.mit.edu	36	6	29450135	29450135	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030959	exon1	c.C909A	p.I303I	.	.	.
OR2H1	26716	broad.mit.edu	36	6	29538345	29538345	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030883	exon3	c.C820A	p.L274I	.	.	.
OR2H2	7932	broad.mit.edu	36	6	29664250	29664250	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007160	exon1	c.C550T	p.R184X	.	.	.
OR2H2	7932	broad.mit.edu	36	6	29664410	29664410	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007160	exon1	c.G710T	p.G237V	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29689233	29689233	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021904	exon11	c.G1146A	p.Q382Q	.	.	.
MOG	4340	broad.mit.edu	36	6	29741950	29741950	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002433	exon3	c.C479T	p.A160V	.	.	.
ZFP57	346171	broad.mit.edu	36	6	29748562	29748562	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109809	exon4	c.G1305A	p.W435X	.	.	.
HLA-G	3135	broad.mit.edu	36	6	29904570	29904570	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002127	exon4	c.C615T	p.R205R	.	.	.
FLOT1	10211	broad.mit.edu	36	6	30817055	30817055	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005803	exon5	c.C245A	p.A82E	.	.	.
BPHL	670	broad.mit.edu	36	6	3097725	3097725	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004332	exon7	c.C793T	p.H265Y	.	.	.
DPCR1	135656	broad.mit.edu	36	6	31027891	31027891	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080870	exon2	c.C3671T	p.A1224V	.	.	.
CCHCR1	54535	broad.mit.edu	36	6	31233172	31233172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105563	exon1	c.G185A	p.S62N	.	.	.
TNF	7124	broad.mit.edu	36	6	31653068	31653068	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000594	exon4	c.C477T	p.I159I	.	.	.
BAT3	7917	broad.mit.edu	36	6	31716897	31716897	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098534	exon19	c.A2642G	p.Q881R	.	.	.
LY6G6F	259215	broad.mit.edu	36	6	31785931	31785931	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003693	exon4	c.G796T	p.G266C	.	.	.
LY6G6C	80740	broad.mit.edu	36	6	31795951	31795951	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025261	exon2	c.C61T	p.R21C	.	.	.
MSH5	4439	broad.mit.edu	36	6	31837299	31837299	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002441	exon22	c.C2109A	p.I703I	.	.	.
HSPA1L	3305	broad.mit.edu	36	6	31887493	31887493	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005527	exon2	c.A236C	p.K79T	.	.	.
SLC44A4	80736	broad.mit.edu	36	6	31941812	31941812	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178044	exon13	c.T1178G	p.I393S	.	.	.
CFB	629	broad.mit.edu	36	6	32022312	32022312	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001710	exon2	c.G248A	p.S83N	.	.	.
CFB	629	broad.mit.edu	36	6	32023738	32023738	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001710	exon6	c.A798G	p.S266S	.	.	.
SKIV2L	6499	broad.mit.edu	36	6	32039466	32039466	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006929	exon15	c.A1624G	p.T542A	.	.	.
TNXB	7148	broad.mit.edu	36	6	32147815	32147815	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon13	c.G4920T	p.K1640N	.	.	.
FKBPL	63943	broad.mit.edu	36	6	32204881	32204881	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022110	exon2	c.G655T	p.E219X	.	.	.
FKBPL	63943	broad.mit.edu	36	6	32205094	32205094	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022110	exon2	c.G442A	p.V148I	.	.	.
BTNL2	56244	broad.mit.edu	36	6	32478799	32478799	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019602	exon3	c.C600A	p.F200L	.	.	.
SLC22A23	63027	broad.mit.edu	36	6	3269085	3269085	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021945	exon5	c.T221C	p.L74P	.	.	.
TAP2	6891	broad.mit.edu	36	6	32904716	32904716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000544	exon12	c.C2006T	p.A669V	.	.	.
HLA-DMA	3108	broad.mit.edu	36	6	33026397	33026397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006120	exon2	c.G250A	p.E84K	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33239474	33239474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080681	exon64	c.C4912T	p.R1638W	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33253419	33253419	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080681	exon20	c.T1657G	p.L553V	.	.	.
COL11A2	1302	broad.mit.edu	36	6	33254679	33254679	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080681	exon15	c.T1403C	p.V468A	.	.	.
SLC39A7	7922	broad.mit.edu	36	6	33279302	33279302	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006979	exon7	c.C1144T	p.R382C	.	.	.
WDR46	9277	broad.mit.edu	36	6	33364597	33364597	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164267	exon2	c.G79A	p.E27K	.	.	.
TAPBP	6892	broad.mit.edu	36	6	33389165	33389165	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172208	exon3	c.G276T	p.E92D	.	.	.
SYNGAP1	8831	broad.mit.edu	36	6	33513491	33513491	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006772	exon8	c.G831T	p.K277N	.	.	.
ITPR3	3710	broad.mit.edu	36	6	33739577	33739577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002224	exon11	c.G1090A	p.A364T	.	.	.
C6orf125	84300	broad.mit.edu	36	6	33776236	33776236	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032340	exon3	c.C246T	p.G82G	.	.	.
IP6K3	117283	broad.mit.edu	36	6	33801242	33801242	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_054111	exon5	c.C719T	p.A240V	.	.	.
PACSIN1	29993	broad.mit.edu	36	6	34606071	34606071	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020804	exon7	c.C862T	p.R288C	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34911055	34911055	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017754	exon7	c.G676T	p.D226Y	.	.	.
UHRF1BP1	54887	broad.mit.edu	36	6	34934264	34934264	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017754	exon14	c.T2153A	p.F718Y	.	.	.
TCP11	6954	broad.mit.edu	36	6	35195083	35195083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018679	exon9	c.G993T	p.K331N	.	.	.
C6orf81	221481	broad.mit.edu	36	6	35823369	35823369	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145028	exon5	c.G738T	p.K246N	.	.	.
LHFPL5	222662	broad.mit.edu	36	6	35881596	35881596	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182548	exon1	c.G171A	p.P57P	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35933083	35933083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003137	exon13	c.G1553A	p.R518H	.	.	.
SLC26A8	116369	broad.mit.edu	36	6	36031169	36031169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193476	exon17	c.C1970T	p.S657F	.	.	.
MAPK14	1432	broad.mit.edu	36	6	36149458	36149458	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001315	exon5	c.G430A	p.A144T	.	.	.
BRPF3	27154	broad.mit.edu	36	6	36290104	36290104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015695	exon8	c.C2952T	p.S984S	.	.	.
C6orf222	389384	broad.mit.edu	36	6	36399943	36399943	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010903	exon7	c.G1171T	p.E391X	.	.	.
PIM1	5292	broad.mit.edu	36	6	37248868	37248868	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002648	exon5	c.C726T	p.F242F	.	.	.
TMEM217	221468	broad.mit.edu	36	6	37294613	37294613	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145316	exon2	c.A172G	p.N58D	.	.	.
RNF8	9025	broad.mit.edu	36	6	37436317	37436317	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003958	exon2	c.A229G	p.M77V	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37538641	37538641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015050	exon13	c.G1384A	p.A462T	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37548220	37548220	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015050	exon16	c.G1668A	p.S556S	.	.	.
FTSJD2	23070	broad.mit.edu	36	6	37553382	37553382	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015050	exon21	c.G2142T	p.K714N	.	.	.
BTBD9	114781	broad.mit.edu	36	6	38420770	38420770	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172418	exon7	c.A1142G	p.N381S	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38810314	38810314	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon3	c.G46T	p.G16X	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38933327	38933327	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon40	c.G5138A	p.R1713H	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38942389	38942389	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon44	c.A5892C	p.K1964N	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38966409	38966409	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon56	c.T7826G	p.I2609S	.	.	.
DNAH8	1769	broad.mit.edu	36	6	39007623	39007623	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon74	c.C10682T	p.T3561M	.	.	.
KIF6	221458	broad.mit.edu	36	6	39615835	39615835	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145027	exon13	c.C1567T	p.R523X	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3989203	3989203	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003913	exon6	c.T1808G	p.F603C	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40508260	40508260	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020737	exon2	c.G571T	p.G191C	.	.	.
UNC5CL	222643	broad.mit.edu	36	6	41106386	41106386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173561	exon7	c.G1206A	p.P402P	.	.	.
TREML1	340205	broad.mit.edu	36	6	41229496	41229496	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178174	exon2	c.C354A	p.V118V	.	.	.
PGC	5225	broad.mit.edu	36	6	41812573	41812573	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002630	exon9	c.G1162A	p.A388T	.	.	.
PGC	5225	broad.mit.edu	36	6	41818148	41818148	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002630	exon5	c.A505G	p.T169A	.	.	.
UBR2	23304	broad.mit.edu	36	6	42723866	42723866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015255	exon22	c.C2442T	p.I814I	.	.	.
UBR2	23304	broad.mit.edu	36	6	42735557	42735557	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015255	exon30	c.T3428G	p.F1143C	.	.	.
TBCC	6903	broad.mit.edu	36	6	42820861	42820861	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003192	exon1	c.G929T	p.R310M	.	.	.
PTCRA	171558	broad.mit.edu	36	6	43001313	43001313	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138296	exon4	c.G761T	p.R254I	.	.	.
MEA1	4201	broad.mit.edu	36	6	43089047	43089047	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014623	exon2	c.C87A	p.I29I	.	.	.
EXOC2	55770	broad.mit.edu	36	6	431720	431720	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018303	exon28	c.T2726C	p.L909S	.	.	.
PTK7	5754	broad.mit.edu	36	6	43205520	43205520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152882	exon3	c.C445T	p.R149C	.	.	.
CUL9	23113	broad.mit.edu	36	6	43264394	43264394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon8	c.C2143T	p.R715W	.	.	.
TTBK1	84630	broad.mit.edu	36	6	43333587	43333587	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032538	exon10	c.C921A	p.A307A	.	.	.
ABCC10	89845	broad.mit.edu	36	6	43514441	43514441	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198934	exon8	c.T2057G	p.F686C	.	.	.
ABCC10	89845	broad.mit.edu	36	6	43524865	43524865	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198934	exon20	c.C4148A	p.S1383Y	.	.	.
RSPH9	221421	broad.mit.edu	36	6	43731294	43731294	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152732	exon3	c.G411T	p.E137D	.	.	.
MRPL14	64928	broad.mit.edu	36	6	44189684	44189684	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032111	exon3	c.C312T	p.N104N	.	.	.
TMEM63B	55362	broad.mit.edu	36	6	44230124	44230124	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018426	exon23	c.A2271G	p.G757G	.	.	.
HSP90AB1	3326	broad.mit.edu	36	6	44329210	44329210	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007355	exon12	c.A2072G	p.D691G	.	.	.
NFKBIE	4794	broad.mit.edu	36	6	44336192	44336192	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004556	exon4	c.C1171T	p.R391W	.	.	.
TCTE1	202500	broad.mit.edu	36	6	44356060	44356060	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182539	exon5	c.C1342A	p.L448I	.	.	.
AARS2	57505	broad.mit.edu	36	6	44376909	44376909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020745	exon21	c.C2755T	p.P919S	.	.	.
SUPT3H	8464	broad.mit.edu	36	6	45037525	45037525	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181356	exon9	c.C556T	p.R186X	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46767004	46767004	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168359	exon1	c.G3180A	p.K1060K	.	.	.
TDRD6	221400	broad.mit.edu	36	6	46767759	46767759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168359	exon1	c.C3935A	p.S1312Y	.	.	.
MEP1A	4224	broad.mit.edu	36	6	46908830	46908830	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005588	exon11	c.G1205A	p.R402H	.	.	.
TNFRSF21	27242	broad.mit.edu	36	6	47328977	47328977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014452	exon4	c.C1483T	p.R495C	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47579032	47579032	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012120	exon2	c.G62A	p.R21Q	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47609382	47609382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012120	exon3	c.G251A	p.R84Q	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47620401	47620401	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012120	exon4	c.G420T	p.E140D	.	.	.
GPR111	222611	broad.mit.edu	36	6	47757152	47757152	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153839	exon7	c.G694T	p.D232Y	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47954071	47954071	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013732	exon3	c.C2468A	p.A823D	.	.	.
C6orf138	442213	broad.mit.edu	36	6	48084634	48084634	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013732	exon2	c.T602G	p.L201R	.	.	.
RPP40	10799	broad.mit.edu	36	6	4940491	4940491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006638	exon8	c.G912A	p.P304P	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862035	49862035	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138733	exon1	c.G825T	p.K275N	.	.	.
PGK2	5232	broad.mit.edu	36	6	49862493	49862493	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138733	exon1	c.C367T	p.R123C	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51717145	51717145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon60	c.G10153A	p.A3385T	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51717297	51717297	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon60	c.A10001C	p.K3334T	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51719516	51719516	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon59	c.A9960G	p.K3320K	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51884692	51884692	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_170724	exon39	c.G6354T	p.E2118D	.	.	.
EXOC2	55770	broad.mit.edu	36	6	521760	521760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018303	exon12	c.G1315A	p.D439N	.	.	.
EFHC1	114327	broad.mit.edu	36	6	52426970	52426970	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018100	exon5	c.G842A	p.R281Q	.	.	.
GCM1	8521	broad.mit.edu	36	6	53101293	53101293	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003643	exon6	c.C981A	p.F327L	.	.	.
GCLC	2729	broad.mit.edu	36	6	53473216	53473216	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197115	exon12	c.T1336C	p.F446L	.	.	.
GCLC	2729	broad.mit.edu	36	6	53481977	53481977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197115	exon6	c.G670A	p.A224T	.	.	.
C6orf142	90523	broad.mit.edu	36	6	54203499	54203499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138569	exon11	c.C1142T	p.S381L	.	.	.
FAM83B	222584	broad.mit.edu	36	6	54899182	54899182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010872	exon3	c.G499A	p.V167I	.	.	.
HCRTR2	3062	broad.mit.edu	36	6	55255178	55255178	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001526	exon7	c.A1302G	p.A434A	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55486854	55486854	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019036	exon6	c.T583A	p.F195I	.	.	.
BMP5	653	broad.mit.edu	36	6	55728309	55728309	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021073	exon7	c.G1346A	p.R449H	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56140884	56140884	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon6	c.T1197G	p.V399V	.	.	.
COL21A1	81578	broad.mit.edu	36	6	56143826	56143826	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030820	exon4	c.C700A	p.L234I	.	.	.
DST	667	broad.mit.edu	36	6	56533160	56533160	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon39	c.G6462A	p.K2154K	.	.	.
DST	667	broad.mit.edu	36	6	56566840	56566840	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon29	c.G4437T	p.E1479D	.	.	.
DST	667	broad.mit.edu	36	6	56571244	56571244	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon27	c.G4048T	p.E1350X	.	.	.
DST	667	broad.mit.edu	36	6	56589226	56589226	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon24	c.T6998C	p.V2333A	.	.	.
DST	667	broad.mit.edu	36	6	56591420	56591420	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon23	c.G5371T	p.E1791X	.	.	.
DST	667	broad.mit.edu	36	6	56592197	56592197	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001723	exon23	c.G4594T	p.E1532X	.	.	.
DST	667	broad.mit.edu	36	6	56605727	56605727	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon14	c.T2078G	p.F693C	.	.	.
DST	667	broad.mit.edu	36	6	56612218	56612218	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon7	c.G1237T	p.D413Y	.	.	.
ZNF451	26036	broad.mit.edu	36	6	57101540	57101540	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031623	exon5	c.G367T	p.G123X	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57354873	57354873	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000947	exon7	c.T641A	p.I214N	.	.	.
PRIM2	5558	broad.mit.edu	36	6	57480269	57480269	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000947	exon8	c.C716T	p.A239V	.	.	.
EXOC2	55770	broad.mit.edu	36	6	582784	582784	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018303	exon2	c.G35A	p.G12D	.	.	.
F13A1	2162	broad.mit.edu	36	6	6141036	6141036	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000129	exon10	c.T1298C	p.F433S	.	.	.
KHDRBS2	202559	broad.mit.edu	36	6	62662515	62662515	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152688	exon6	c.A794G	p.E265G	.	.	.
LGSN	51557	broad.mit.edu	36	6	64047907	64047907	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016571	exon4	c.A1508C	p.K503T	.	.	.
PTP4A1	7803	broad.mit.edu	36	6	64344828	64344828	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003463	exon2	c.G84A	p.A28A	.	.	.
PHF3	23469	broad.mit.edu	36	6	64452886	64452886	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon3	c.T1304C	p.I435T	.	.	.
PHF3	23469	broad.mit.edu	36	6	64459796	64459796	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon4	c.G2400T	p.M800I	.	.	.
PHF3	23469	broad.mit.edu	36	6	64479672	64479672	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon15	c.G4229T	p.R1410I	.	.	.
PHF3	23469	broad.mit.edu	36	6	64480630	64480630	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon15	c.G5187T	p.Q1729H	.	.	.
PHF3	23469	broad.mit.edu	36	6	64481315	64481315	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon15	c.G5872T	p.D1958Y	.	.	.
BAI3	577	broad.mit.edu	36	6	69760460	69760460	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001704	exon11	c.T1814C	p.L605S	.	.	.
B3GAT2	135152	broad.mit.edu	36	6	71628275	71628275	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080742	exon3	c.G864A	p.P288P	.	.	.
SSR1	6745	broad.mit.edu	36	6	7235154	7235154	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003144	exon8	c.C803T	p.S268L	.	.	.
RIMS1	22999	broad.mit.edu	36	6	72946305	72946305	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon5	c.T778C	p.S260P	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73057229	73057229	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014989	exon25	c.T3681G	p.C1227W	.	.	.
KCNQ5	56479	broad.mit.edu	36	6	73961222	73961222	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160133	exon15	c.C2220T	p.S740S	.	.	.
OOEP	441161	broad.mit.edu	36	6	74136074	74136074	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080507	exon1	c.G163T	p.E55X	.	.	.
C6orf150	115004	broad.mit.edu	36	6	74212148	74212148	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138441	exon2	c.T701C	p.V234A	.	.	.
CD109	135228	broad.mit.edu	36	6	74534523	74534523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon14	c.G1522A	p.A508T	.	.	.
CD109	135228	broad.mit.edu	36	6	74554979	74554979	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon22	c.G2624A	p.S875N	.	.	.
DSP	1832	broad.mit.edu	36	6	7530651	7530651	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008844	exon24	c.G6360A	p.P2120P	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75883860	75883860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080645	exon32	c.G3985A	p.E1329K	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75912599	75912599	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080645	exon9	c.C1007T	p.A336V	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75932173	75932173	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon14	c.A2753C	p.D918A	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75949971	75949971	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon10	c.G1406T	p.S469I	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75961290	75961290	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon3	c.G167T	p.R56I	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76078888	76078888	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015687	exon5	c.G3380T	p.S1127I	.	.	.
MYO6	4646	broad.mit.edu	36	6	76589273	76589273	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004999	exon3	c.G172T	p.D58Y	.	.	.
MYO6	4646	broad.mit.edu	36	6	76680598	76680598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004999	exon34	c.G3538A	p.D1180N	.	.	.
IMPG1	3617	broad.mit.edu	36	6	76808354	76808354	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001563	exon2	c.C277T	p.L93F	.	.	.
IMPG1	3617	broad.mit.edu	36	6	76838885	76838885	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001563	exon1	c.T41G	p.I14S	.	.	.
HTR1B	3351	broad.mit.edu	36	6	78229800	78229800	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000863	exon1	c.G40A	p.A14T	.	.	.
TXNDC5	81567	broad.mit.edu	36	6	7849928	7849928	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030810	exon2	c.G291A	p.P97P	.	.	.
PHIP	55023	broad.mit.edu	36	6	79707464	79707464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017934	exon40	c.C5131T	p.R1711C	.	.	.
PHIP	55023	broad.mit.edu	36	6	79749336	79749336	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017934	exon23	c.G2755T	p.E919X	.	.	.
PHIP	55023	broad.mit.edu	36	6	79754715	79754715	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017934	exon21	c.G2390A	p.R797H	.	.	.
IBTK	25998	broad.mit.edu	36	6	82982609	82982609	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015525	exon11	c.C1504T	p.R502X	.	.	.
SLC35B3	51000	broad.mit.edu	36	6	8360173	8360173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001142541	exon10	c.C1022T	p.S341L	.	.	.
PGM3	5238	broad.mit.edu	36	6	83957291	83957291	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015599	exon2	c.A160C	p.K54Q	.	.	.
PRSS35	167681	broad.mit.edu	36	6	84290867	84290867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170423	exon3	c.G988A	p.E330K	.	.	.
SNAP91	9892	broad.mit.edu	36	6	84360105	84360105	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014841	exon17	c.A1507G	p.T503A	.	.	.
RIPPLY2	134701	broad.mit.edu	36	6	84623822	84623822	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009994	exon4	c.A382C	p.N128H	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84941671	84941671	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014895	exon14	c.C1778T	p.S593F	.	.	.
TBX18	9096	broad.mit.edu	36	6	85503188	85503188	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080508	exon8	c.C1758A	p.F586L	.	.	.
SYNCRIP	10492	broad.mit.edu	36	6	86381465	86381465	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159673	exon10	c.G1306A	p.G436S	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782083	87782083	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000865	exon2	c.C312A	p.T104T	.	.	.
ZNF292	23036	broad.mit.edu	36	6	87985115	87985115	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon4	c.A485C	p.K162T	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88022058	88022058	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.C1992A	p.S664S	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88022402	88022402	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.C2336T	p.A779V	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88024643	88024643	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.C4577T	p.T1526M	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88025482	88025482	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.T5416G	p.L1806V	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88026409	88026409	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.C6343T	p.R2115X	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88176370	88176370	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031743	exon2	c.C94A	p.L32M	.	.	.
C6orf165	154313	broad.mit.edu	36	6	88230492	88230492	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031743	exon13	c.A1674C	p.Q558H	.	.	.
ORC3	23595	broad.mit.edu	36	6	88382816	88382816	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197259	exon8	c.C510A	p.I170I	.	.	.
AKIRIN2	55122	broad.mit.edu	36	6	88444277	88444277	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018064	exon3	c.A507C	p.E169D	.	.	.
CNR1	1268	broad.mit.edu	36	6	88911459	88911459	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160259	exon2	c.C254A	p.S85Y	.	.	.
SRSF12	135295	broad.mit.edu	36	6	89871611	89871611	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080743	exon4	c.G362A	p.R121Q	.	.	.
GABRR1	2569	broad.mit.edu	36	6	89956647	89956647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002042	exon6	c.G611A	p.R204Q	.	.	.
GABRR2	2570	broad.mit.edu	36	6	90034120	90034120	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002043	exon6	c.A808G	p.T270A	.	.	.
RRAGD	58528	broad.mit.edu	36	6	90153874	90153874	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021244	exon2	c.C303T	p.C101C	.	.	.
MDN1	23195	broad.mit.edu	36	6	90491799	90491799	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon38	c.A5510C	p.N1837T	.	.	.
MDN1	23195	broad.mit.edu	36	6	90525291	90525291	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon18	c.C2570A	p.S857Y	.	.	.
MDN1	23195	broad.mit.edu	36	6	90585990	90585990	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon1	c.A58G	p.N20D	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90630115	90630115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon7	c.G1966A	p.E656K	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90637787	90637787	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon9	c.T5851G	p.F1951V	.	.	.
GJA10	84694	broad.mit.edu	36	6	90662512	90662512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032602	exon1	c.C1604T	p.S535L	.	.	.
BACH2	60468	broad.mit.edu	36	6	90716850	90716850	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021813	exon7	c.C1696A	p.L566M	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94035968	94035968	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004440	exon7	c.T1581G	p.S527R	.	.	.
KLHL32	114792	broad.mit.edu	36	6	97521661	97521661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052904	exon2	c.C4T	p.P2S	.	.	.
KLHL32	114792	broad.mit.edu	36	6	97668600	97668600	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052904	exon7	c.A848T	p.K283I	.	.	.
C6orf167	253714	broad.mit.edu	36	6	97783683	97783683	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198468	exon14	c.A1847C	p.Q616P	.	.	.
SFRS18	25957	broad.mit.edu	36	6	99965477	99965477	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032870	exon5	c.C362A	p.P121H	.	.	.
LACE1	246269	broad.mit.edu	36	6	108783662	108783662	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SYCP2L	221711	broad.mit.edu	36	6	11039709	11039709	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
WASF1	8936	broad.mit.edu	36	6	110534961	110534961	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RPF2	84154	broad.mit.edu	36	6	111453287	111453287	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
WISP3	8838	broad.mit.edu	36	6	112494933	112494933	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112550102	112550102	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112586787	112586787	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
LAMA4	3910	broad.mit.edu	36	6	112641940	112641940	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
NKAIN2	154215	broad.mit.edu	36	6	124645992	124645992	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STL	7955	broad.mit.edu	36	6	125273274	125273274	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STL	7955	broad.mit.edu	36	6	125274084	125274084	+	RNA	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128600863	128600863	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STX7	8417	broad.mit.edu	36	6	132833399	132833399	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VNN3	55350	broad.mit.edu	36	6	133085864	133085864	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VNN2	8875	broad.mit.edu	36	6	133120497	133120497	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KIAA1244	57221	broad.mit.edu	36	6	138661432	138661432	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
REPS1	85021	broad.mit.edu	36	6	139271658	139271658	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152730037	152730037	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152824420	152824420	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155603543	155603543	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TCP1	6950	broad.mit.edu	36	6	160121458	160121458	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TCP1	6950	broad.mit.edu	36	6	160126719	160126719	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MRPL18	29074	broad.mit.edu	36	6	160131671	160131671	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PLG	5340	broad.mit.edu	36	6	161043380	161043380	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
QKI	9444	broad.mit.edu	36	6	163906994	163906994	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
QKI	9444	broad.mit.edu	36	6	163907735	163907735	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PDE10A	10846	broad.mit.edu	36	6	165749666	165749666	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BRP44L	51660	broad.mit.edu	36	6	166698939	166698939	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PHF10	55274	broad.mit.edu	36	6	169846023	169846023	+	3'UTR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PRL	5617	broad.mit.edu	36	6	22398566	22398566	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DCDC2	51473	broad.mit.edu	36	6	24461773	24461773	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24691917	24691917	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GMNN	51053	broad.mit.edu	36	6	24893844	24893844	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BTN2A3	54718	broad.mit.edu	36	6	26539553	26539553	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GPX6	257202	broad.mit.edu	36	6	28582186	28582186	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28648122	28648122	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28648262	28648262	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SCAND3	114821	broad.mit.edu	36	6	28649015	28649015	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	6	29339486	29339486	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29688989	29688989	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MOG	4340	broad.mit.edu	36	6	29746485	29746485	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FLOT1	10211	broad.mit.edu	36	6	30806667	30806667	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
VARS2	57176	broad.mit.edu	36	6	30991809	30991809	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HCG27	253018	broad.mit.edu	36	6	31278531	31278531	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C6orf81	221481	broad.mit.edu	36	6	35813774	35813774	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RNF8	9025	broad.mit.edu	36	6	37466495	37466495	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MDGA1	266727	broad.mit.edu	36	6	37714425	37714425	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38798833	38798833	+	5'UTR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38867440	38867440	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38985509	38985509	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRPF4B	8899	broad.mit.edu	36	6	3997943	3997943	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RPL7L1	285855	broad.mit.edu	36	6	42959340	42959340	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CAPN11	11131	broad.mit.edu	36	6	44255351	44255351	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CDC5L	988	broad.mit.edu	36	6	44498529	44498529	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CYP39A1	51302	broad.mit.edu	36	6	46629557	46629557	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OPN5	221391	broad.mit.edu	36	6	47867668	47867668	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RHAG	6005	broad.mit.edu	36	6	49686823	49686823	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TFAP2B	7021	broad.mit.edu	36	6	50894651	50894651	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GCLC	2729	broad.mit.edu	36	6	53473281	53473281	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DST	667	broad.mit.edu	36	6	56576132	56576132	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DST	667	broad.mit.edu	36	6	56577856	56577856	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DST	667	broad.mit.edu	36	6	56618746	56618746	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DST	667	broad.mit.edu	36	6	56824218	56824218	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DST	667	broad.mit.edu	36	6	56873354	56873354	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RAB23	51715	broad.mit.edu	36	6	57180374	57180374	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EYS	346007	broad.mit.edu	36	6	66169082	66169082	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73017523	73017523	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FILIP1	27145	broad.mit.edu	36	6	76081645	76081645	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MYO6	4646	broad.mit.edu	36	6	76678108	76678108	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BMP6	654	broad.mit.edu	36	6	7790365	7790365	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RNGTT	8732	broad.mit.edu	36	6	89657046	89657046	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MDN1	23195	broad.mit.edu	36	6	90444143	90444143	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TAS2R39	259285	broad.mit.edu	36	7	142590743	142590743	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176881	exon1	c.110delT	p.I37fs	.	.	.
FBXO24	26261	broad.mit.edu	36	7	100036156	100036156	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163499	exon10	c.G1405A	p.D469N	.	.	.
ZAN	7455	broad.mit.edu	36	7	100188659	100188659	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173059	exon14	c.G2995T	p.A999S	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100295774	100295774	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020246	exon9	c.C1202A	p.S401Y	.	.	.
TRIP6	7205	broad.mit.edu	36	7	100306169	100306169	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003302	exon6	c.T867C	p.D289D	.	.	.
MUC17	140453	broad.mit.edu	36	7	100468886	100468886	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.C7469A	p.S2490Y	.	.	.
MUC17	140453	broad.mit.edu	36	7	100488008	100488008	+	Missense_Mutation	SNP	G	A	A	rs9656065	byCluster;byFrequency;byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon13	c.G13445A	p.R4482Q	.	.	.
LRWD1	222229	broad.mit.edu	36	7	101893656	101893656	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152892	exon3	c.C366A	p.V122V	.	.	.
FBXL13	222235	broad.mit.edu	36	7	102456382	102456382	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111038	exon4	c.A118T	p.K40X	.	.	.
PSMC2	5701	broad.mit.edu	36	7	102795141	102795141	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002803	exon10	c.G890T	p.R297I	.	.	.
RELN	5649	broad.mit.edu	36	7	102911348	102911348	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173054	exon62	c.A10169G	p.Y3390C	.	.	.
RELN	5649	broad.mit.edu	36	7	102925773	102925773	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173054	exon54	c.C8830A	p.L2944I	.	.	.
RELN	5649	broad.mit.edu	36	7	102928471	102928471	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173054	exon53	c.C8624T	p.P2875L	.	.	.
RELN	5649	broad.mit.edu	36	7	103079363	103079363	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173054	exon15	c.T1873C	p.S625P	.	.	.
MLL5	55904	broad.mit.edu	36	7	104504835	104504835	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon10	c.G958A	p.D320N	.	.	.
MLL5	55904	broad.mit.edu	36	7	104536650	104536650	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon23	c.G3494T	p.R1165I	.	.	.
MLL5	55904	broad.mit.edu	36	7	104539700	104539700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon27	c.G4261A	p.V1421I	.	.	.
PUS7	54517	broad.mit.edu	36	7	104893035	104893035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019042	exon13	c.C1588T	p.P530S	.	.	.
NAMPT	10135	broad.mit.edu	36	7	105691186	105691186	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005746	exon7	c.C857T	p.A286V	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106296775	106296775	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.G1533T	p.E511D	 PIK3CG,lung,NS,Substitution - Missense,+2 	.	.
HBP1	26959	broad.mit.edu	36	7	106627939	106627939	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012257	exon10	c.A1484C	p.K495T	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107116757	107116757	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000441	exon9	c.C1025A	p.P342H	.	.	.
LAMB4	22798	broad.mit.edu	36	7	107490614	107490614	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007356	exon23	c.C3123T	p.C1041C	.	.	.
NRCAM	4897	broad.mit.edu	36	7	107577608	107577608	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193583	exon30	c.A3562C	p.M1188L	.	.	.
NRCAM	4897	broad.mit.edu	36	7	107653969	107653969	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193583	exon9	c.G640A	p.E214K	.	.	.
THAP5	168451	broad.mit.edu	36	7	107992254	107992254	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182529	exon3	c.G679T	p.E227X	.	.	.
DNAJB9	4189	broad.mit.edu	36	7	107999512	107999512	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012328	exon2	c.T106G	p.S36A	.	.	.
NDUFA4	4697	broad.mit.edu	36	7	10944982	10944982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002489	exon2	c.G109A	p.A37T	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111187599	111187599	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014705	exon39	c.T4009G	p.C1337G	.	.	.
IFRD1	3475	broad.mit.edu	36	7	111902752	111902752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001550	exon12	c.G1298A	p.R433Q	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112200287	112200287	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022484	exon4	c.C1331A	p.S444Y	.	.	.
TMEM168	64418	broad.mit.edu	36	7	112212107	112212107	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022484	exon2	c.T10G	p.S4A	.	.	.
PPP1R3A	5506	broad.mit.edu	36	7	113306905	113306905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002711	exon4	c.C1478T	p.T493M	.	.	.
FOXP2	93986	broad.mit.edu	36	7	114058925	114058925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172766	exon6	c.G701A	p.S234N	.	.	.
FOXP2	93986	broad.mit.edu	36	7	114081218	114081218	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172766	exon10	c.T1181G	p.L394R	.	.	.
THSD7A	221981	broad.mit.edu	36	7	11599449	11599449	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015204	exon3	c.G1228T	p.E410X	.	.	.
MET	4233	broad.mit.edu	36	7	116126982	116126982	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000245	exon2	c.C608A	p.S203Y	.	.	.
MET	4233	broad.mit.edu	36	7	116184764	116184764	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000245	exon7	c.T1900C	p.F634L	.	.	.
ASZ1	136991	broad.mit.edu	36	7	116854737	116854737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130768	exon1	c.C14T	p.A5V	.	.	.
CFTR	1080	broad.mit.edu	36	7	116986821	116986821	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon11	c.G1460T	p.R487I	.	.	.
CFTR	1080	broad.mit.edu	36	7	117054948	117054948	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon22	c.A3605G	p.D1202G	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117194403	117194403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033427	exon9	c.C2842T	p.R948W	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117219996	117219996	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033427	exon4	c.C490T	p.R164C	.	.	.
NAA38	51691	broad.mit.edu	36	7	117612973	117612973	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016200	exon2	c.A61G	p.R21G	.	.	.
ANKRD7	56311	broad.mit.edu	36	7	117662124	117662124	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019644	exon3	c.A428C	p.K143T	.	.	.
ANKRD7	56311	broad.mit.edu	36	7	117663436	117663436	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019644	exon4	c.A574C	p.R192R	.	.	.
KCND2	3751	broad.mit.edu	36	7	120173183	120173183	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012281	exon5	c.C1581T	p.S527S	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120671522	120671522	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105533	exon17	c.C2204T	p.S735L	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120694512	120694512	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024913	exon21	c.T2641G	p.L881V	.	.	.
WNT16	51384	broad.mit.edu	36	7	120766444	120766444	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016087	exon4	c.C877A	p.P293T	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121439849	121439849	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon12	c.G3513T	p.E1171D	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121440344	121440344	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon12	c.T4008G	p.I1336M	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121446533	121446533	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002851	exon13	c.C4963A	p.L1655I	.	.	.
AASS	10157	broad.mit.edu	36	7	121505227	121505227	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon23	c.A2563C	p.T855P	.	.	.
AASS	10157	broad.mit.edu	36	7	121508829	121508829	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon20	c.G2241A	p.A747A	.	.	.
AASS	10157	broad.mit.edu	36	7	121540910	121540910	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon10	c.G1144T	p.D382Y	.	.	.
FEZF1	389549	broad.mit.edu	36	7	121731349	121731349	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001024613	exon1	c.C379T	p.L127F	.	.	.
RNF133	168433	broad.mit.edu	36	7	122125912	122125912	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139175	exon1	c.G297A	p.E99E	.	.	.
IQUB	154865	broad.mit.edu	36	7	122888807	122888807	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178827	exon11	c.C1847A	p.S616X	.	.	.
IQUB	154865	broad.mit.edu	36	7	122939579	122939579	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178827	exon2	c.G52T	p.E18X	.	.	.
WASL	8976	broad.mit.edu	36	7	123131941	123131941	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003941	exon5	c.G443T	p.R148I	.	.	.
WASL	8976	broad.mit.edu	36	7	123134032	123134032	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003941	exon3	c.G337T	p.D113Y	.	.	.
GPR37	2861	broad.mit.edu	36	7	124191645	124191645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005302	exon1	c.G622A	p.E208K	.	.	.
GRM8	2918	broad.mit.edu	36	7	125960422	125960422	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127323	exon9	c.T2250G	p.I750M	.	.	.
GRM8	2918	broad.mit.edu	36	7	126329893	126329893	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127323	exon6	c.G1095T	p.E365D	.	.	.
GRM8	2918	broad.mit.edu	36	7	126670406	126670406	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127323	exon2	c.G89T	p.R30I	.	.	.
PAX4	5078	broad.mit.edu	36	7	127041153	127041153	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006193	exon4	c.T431C	p.V144A	.	.	.
SND1	27044	broad.mit.edu	36	7	127132144	127132144	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014390	exon8	c.G856T	p.E286X	.	.	.
LRRC4	64101	broad.mit.edu	36	7	127457140	127457140	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022143	exon2	c.G790T	p.G264W	.	.	.
OPN1SW	611	broad.mit.edu	36	7	128202770	128202770	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001708	exon1	c.G311A	p.R104H	.	.	.
CCDC136	64753	broad.mit.edu	36	7	128228762	128228762	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022742	exon4	c.C633T	p.S211S	.	.	.
FLNC	2318	broad.mit.edu	36	7	128272336	128272336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon21	c.C3581T	p.S1194L	.	.	.
FLNC	2318	broad.mit.edu	36	7	128276132	128276132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001458	exon28	c.G4787A	p.G1596D	.	.	.
AHCYL2	23382	broad.mit.edu	36	7	128816215	128816215	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130722	exon3	c.C249A	p.F83L	.	.	.
NRF1	4899	broad.mit.edu	36	7	129084455	129084455	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005011	exon2	c.G28A	p.E10K	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129450738	129450738	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016478	exon8	c.T1082C	p.V361A	.	.	.
CPA4	51200	broad.mit.edu	36	7	129720316	129720316	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163446	exon1	c.A60C	p.K20N	.	.	.
TSGA14	95681	broad.mit.edu	36	7	129827154	129827154	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018718	exon10	c.A935G	p.Y312C	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131481894	131481894	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon28	c.A4970G	p.N1657S	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131633419	131633419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon4	c.G1474A	p.E492K	.	.	.
EXOC4	60412	broad.mit.edu	36	7	132624269	132624269	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037126	exon3	c.G330A	p.E110E	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133519109	133519109	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144648	exon11	c.G1298A	p.R433H	.	.	.
LRGUK	136332	broad.mit.edu	36	7	133557114	133557114	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144648	exon16	c.G1887T	p.K629N	.	.	.
AKR1B15	441282	broad.mit.edu	36	7	133910712	133910712	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080538	exon7	c.G514A	p.A172T	.	.	.
CALD1	800	broad.mit.edu	36	7	134276475	134276475	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004342	exon6	c.G714A	p.S238S	.	.	.
C7orf49	78996	broad.mit.edu	36	7	134504123	134504123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024033	exon2	c.C92T	p.A31V	.	.	.
WDR91	29062	broad.mit.edu	36	7	134528883	134528883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014149	exon10	c.G1477A	p.D493N	.	.	.
STRA8	346673	broad.mit.edu	36	7	134567322	134567322	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182489	exon1	c.C52A	p.L18M	.	.	.
NUP205	23165	broad.mit.edu	36	7	134909012	134909012	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015135	exon3	c.A242G	p.Q81R	.	.	.
NUP205	23165	broad.mit.edu	36	7	134911695	134911695	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015135	exon4	c.G481T	p.E161X	.	.	.
NUP205	23165	broad.mit.edu	36	7	134941493	134941493	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015135	exon20	c.G2884T	p.E962X	.	.	.
NUP205	23165	broad.mit.edu	36	7	134953799	134953799	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015135	exon28	c.G3871T	p.E1291X	.	.	.
SLC13A4	26266	broad.mit.edu	36	7	135041503	135041503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012450	exon4	c.G451A	p.V151M	.	.	.
CHRM2	1129	broad.mit.edu	36	7	136350847	136350847	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001006626	exon5	c.C695T	p.S232F	.	.	.
CREB3L2	64764	broad.mit.edu	36	7	137217730	137217730	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194071	exon11	c.G1455T	p.E485D	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138084560	138084560	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130840	exon11	c.C1072T	p.Q358X	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138234264	138234264	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon9	c.G3824A	p.R1275Q	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138254482	138254482	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon2	c.T430C	p.S144P	.	.	.
KLRG2	346689	broad.mit.edu	36	7	138815513	138815513	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198508	exon2	c.T778C	p.S260P	.	.	.
ETV1	2115	broad.mit.edu	36	7	13937817	13937817	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163149	exon7	c.C583T	p.R195C	.	.	.
DENND2A	27147	broad.mit.edu	36	7	139893200	139893200	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015689	exon11	c.T2046C	p.D682D	.	.	.
WEE2	494551	broad.mit.edu	36	7	141055088	141055088	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105558	exon1	c.G61A	p.E21K	.	.	.
TAS2R4	50832	broad.mit.edu	36	7	141125204	141125204	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016944	exon1	c.G447A	p.T149T	.	.	.
PRSS37	136242	broad.mit.edu	36	7	141185632	141185632	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171951	exon2	c.C151A	p.L51M	.	.	.
OR9A4	130075	broad.mit.edu	36	7	141265372	141265372	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001656	exon1	c.C228T	p.I76I	.	.	.
CLEC5A	23601	broad.mit.edu	36	7	141290226	141290226	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013252	exon4	c.G147T	p.Q49H	.	.	.
MGAM	8972	broad.mit.edu	36	7	141394112	141394112	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon22	c.G2557T	p.E853X	.	.	.
MGAM	8972	broad.mit.edu	36	7	141405832	141405832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004668	exon32	c.G3911A	p.R1304H	.	.	.
DGKB	1607	broad.mit.edu	36	7	14155355	14155355	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004080	exon25	c.C2341T	p.L781L	.	.	.
PRSS2	5645	broad.mit.edu	36	7	142178812	142178812	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002770	exon1	c.T29C	p.V10A	.	.	.
TRPV6	55503	broad.mit.edu	36	7	142293347	142293347	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018646	exon1	c.C37A	p.L13I	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142315923	142315923	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon15	c.G2069T	p.R690L	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142321976	142321976	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon12	c.G1475A	p.R492H	.	.	.
TRPV5	56302	broad.mit.edu	36	7	142335364	142335364	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	C	C	C	Unknown	Wildtype	None	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019841	exon7	c.G850A	p.D284N	.	.	.
C7orf34	135927	broad.mit.edu	36	7	142346952	142346952	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178829	exon1	c.A187G	p.T63A	.	.	.
CASP2	835	broad.mit.edu	36	7	142699902	142699902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032982	exon4	c.G464A	p.R155H	.	.	.
FAM131B	9715	broad.mit.edu	36	7	142764511	142764511	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031690	exon6	c.A594C	p.E198D	.	.	.
FAM115C	285966	broad.mit.edu	36	7	143048073	143048073	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130026	exon2	c.G496A	p.D166N	.	.	.
CTAGE6P	340307	broad.mit.edu	36	7	143084591	143084591	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178561	exon1	c.C1094A	p.S365Y	.	.	.
OR6B1	135946	broad.mit.edu	36	7	143332379	143332379	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005281	exon1	c.C357A	p.A119A	.	.	.
DGKB	1607	broad.mit.edu	36	7	14344749	14344749	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004080	exon22	c.C2041T	p.R681X	.	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147737489	147737489	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon23	c.C3789A	p.I1263I	.	.	.
CUL1	8454	broad.mit.edu	36	7	148118442	148118442	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003592	exon16	c.C1782A	p.C594X	.	.	.
CUL1	8454	broad.mit.edu	36	7	148126031	148126031	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003592	exon19	c.C2017A	p.L673I	.	.	.
EZH2	2146	broad.mit.edu	36	7	148156883	148156883	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152998	exon5	c.A390C	p.E130D	.	.	.
PDIA4	9601	broad.mit.edu	36	7	148331927	148331927	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004911	exon10	c.C1830T	p.D610D	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148432561	148432561	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001661	exon4	c.G1335A	p.P445P	.	.	.
LRRC61	65999	broad.mit.edu	36	7	149665187	149665187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023942	exon2	c.C304T	p.L102F	.	.	.
GIMAP7	168537	broad.mit.edu	36	7	149848686	149848686	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153236	exon2	c.G691T	p.E231X	.	.	.
GIMAP6	474344	broad.mit.edu	36	7	149955899	149955899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024711	exon3	c.G720T	p.Q240H	.	.	.
GIMAP6	474344	broad.mit.edu	36	7	149956028	149956028	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024711	exon3	c.C591T	p.C197C	.	.	.
GIMAP6	474344	broad.mit.edu	36	7	149956371	149956371	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024711	exon3	c.G248T	p.S83I	.	.	.
GIMAP1	170575	broad.mit.edu	36	7	150048475	150048475	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130759	exon3	c.C450A	p.V150V	.	.	.
TMEM176B	28959	broad.mit.edu	36	7	150120108	150120108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014020	exon6	c.G689A	p.R230Q	.	.	.
ABCB8	11194	broad.mit.edu	36	7	150373274	150373274	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007188	exon16	c.G2062A	p.E688K	.	.	.
ACCN3	9311	broad.mit.edu	36	7	150379914	150379914	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020321	exon7	c.G1299A	p.E433E	.	.	.
SMARCD3	6604	broad.mit.edu	36	7	150570575	150570575	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003078	exon6	c.G465A	p.A155A	.	.	.
PRKAG2	51422	broad.mit.edu	36	7	151003550	151003550	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016203	exon4	c.C573A	p.I191I	.	.	.
PRKAG2	51422	broad.mit.edu	36	7	151109291	151109291	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016203	exon3	c.C346T	p.R116C	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151347718	151347718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145292	exon9	c.C1231T	p.R411C	.	.	.
GALNT11	63917	broad.mit.edu	36	7	151422447	151422447	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022087	exon2	c.G202A	p.E68K	.	.	.
MLL3	58508	broad.mit.edu	36	7	151477024	151477024	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon52	c.C12921T	p.I4307I	.	.	.
TMEM195	392636	broad.mit.edu	36	7	15393567	15393567	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004320	exon9	c.G946T	p.E316X	.	.	.
TMEM195	392636	broad.mit.edu	36	7	15424739	15424739	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004320	exon5	c.A578C	p.N193T	.	.	.
DPP6	1804	broad.mit.edu	36	7	154310369	154310369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039350	exon23	c.G2104A	p.A702T	.	.	.
RBM33	155435	broad.mit.edu	36	7	155227330	155227330	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053043	exon13	c.G2106A	p.A702A	.	.	.
RNF32	140545	broad.mit.edu	36	7	156161242	156161242	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001184996	exon8	c.G776A	p.R259Q	.	.	.
MEOX2	4223	broad.mit.edu	36	7	15618708	15618708	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005924	exon3	c.A744G	p.G248G	.	.	.
LMBR1	64327	broad.mit.edu	36	7	156210976	156210976	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022458	exon14	c.C1072A	p.L358I	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156693286	156693286	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon13	c.C1705T	p.R569X	.	.	.
UBE3C	9690	broad.mit.edu	36	7	156716680	156716680	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014671	exon18	c.G2379T	p.K793N	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157652738	157652738	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130843	exon6	c.G556T	p.D186Y	.	.	.
NCAPG2	54892	broad.mit.edu	36	7	158161017	158161017	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017760	exon12	c.G1239A	p.P413P	.	.	.
ISPD	729920	broad.mit.edu	36	7	16284302	16284302	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101417	exon5	c.G760T	p.E254X	.	.	.
ANKMY2	57037	broad.mit.edu	36	7	16615842	16615842	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020319	exon7	c.T820G	p.F274V	.	.	.
AHR	196	broad.mit.edu	36	7	17316238	17316238	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001621	exon2	c.C219T	p.S73S	.	.	.
AHR	196	broad.mit.edu	36	7	17345479	17345479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001621	exon10	c.C1505T	p.P502L	.	.	.
SNX13	23161	broad.mit.edu	36	7	17856543	17856543	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015132	exon11	c.C1017T	p.F339F	.	.	.
SNX13	23161	broad.mit.edu	36	7	17881631	17881631	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015132	exon7	c.G661T	p.E221X	.	.	.
PRPS1L1	221823	broad.mit.edu	36	7	18033001	18033001	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175886	exon1	c.C930A	p.S310S	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18591625	18591625	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178425	exon2	c.G219T	p.E73D	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18635581	18635581	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178425	exon6	c.G748T	p.D250Y	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18768374	18768374	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178425	exon14	c.T2113C	p.Y705H	.	.	.
FERD3L	222894	broad.mit.edu	36	7	19151460	19151460	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152898	exon1	c.C51T	p.V17V	.	.	.
TMEM196	256130	broad.mit.edu	36	7	19728244	19728244	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152774	exon4	c.G498T	p.L166L	.	.	.
MACC1	346389	broad.mit.edu	36	7	20164438	20164438	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182762	exon5	c.G2071A	p.E691K	.	.	.
MACC1	346389	broad.mit.edu	36	7	20165135	20165135	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182762	exon5	c.G1374T	p.K458N	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20654195	20654195	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163941	exon11	c.C1175A	p.S392Y	.	.	.
ABCB5	340273	broad.mit.edu	36	7	20710946	20710946	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178559	exon11	c.A1077C	p.Q359H	.	.	.
SP4	6671	broad.mit.edu	36	7	21517366	21517366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003112	exon6	c.C2309T	p.S770L	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21578051	21578051	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon8	c.G1528T	p.E510X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21607029	21607029	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon16	c.G3211T	p.E1071X	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21607548	21607548	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon18	c.G3435T	p.E1145D	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21870778	21870778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon70	c.C11496T	p.F3832F	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21879492	21879492	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon74	c.G12065T	p.R4022I	.	.	.
DNAH11	8701	broad.mit.edu	36	7	21907319	21907319	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003777	exon82	c.C13495A	p.L4499M	.	.	.
CDCA7L	55536	broad.mit.edu	36	7	21914416	21914416	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127370	exon5	c.C436A	p.L146I	.	.	.
FAM126A	84668	broad.mit.edu	36	7	22990163	22990163	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032581	exon3	c.T78G	p.N26K	.	.	.
NUPL2	11097	broad.mit.edu	36	7	23206764	23206764	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007342	exon7	c.G1147T	p.D383Y	.	.	.
GPNMB	10457	broad.mit.edu	36	7	23272731	23272731	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002510	exon7	c.C1089T	p.G363G	.	.	.
C7orf30	115416	broad.mit.edu	36	7	23307136	23307136	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138446	exon2	c.C410T	p.A137V	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23353843	23353843	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006547	exon7	c.C719A	p.A240D	.	.	.
CCDC126	90693	broad.mit.edu	36	7	23649234	23649234	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138771	exon4	c.C398T	p.T133M	.	.	.
MPP6	51678	broad.mit.edu	36	7	24655869	24655869	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016447	exon5	c.T384G	p.I128M	.	.	.
DFNA5	1687	broad.mit.edu	36	7	24750810	24750810	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127453	exon3	c.G300A	p.K100K	.	.	.
OSBPL3	26031	broad.mit.edu	36	7	24848538	24848538	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145321	exon12	c.A1178G	p.N393S	.	.	.
IQCE	23288	broad.mit.edu	36	7	2604631	2604631	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152558	exon17	c.G1447T	p.E483X	.	.	.
NFE2L3	9603	broad.mit.edu	36	7	26191618	26191618	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004289	exon4	c.C1775T	p.A592V	.	.	.
HNRNPA2B1	3181	broad.mit.edu	36	7	26203575	26203575	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031243	exon4	c.G185T	p.R62I	.	.	.
TTYH3	80727	broad.mit.edu	36	7	2658385	2658385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025250	exon8	c.G910A	p.A304T	.	.	.
HOXA6	3203	broad.mit.edu	36	7	27151956	27151956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024014	exon2	c.G548A	p.R183H	.	.	.
GNA12	2768	broad.mit.edu	36	7	2737656	2737656	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007353	exon4	c.C831T	p.F277F	.	.	.
TAX1BP1	8887	broad.mit.edu	36	7	27772068	27772068	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079864	exon4	c.A356G	p.Q119R	.	.	.
CPVL	54504	broad.mit.edu	36	7	29098816	29098816	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019029	exon6	c.G490T	p.D164Y	.	.	.
C7orf41	222166	broad.mit.edu	36	7	30152430	30152430	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152793	exon2	c.C275A	p.S92Y	.	.	.
GARS	2617	broad.mit.edu	36	7	30623295	30623295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002047	exon10	c.G1235A	p.R412H	.	.	.
FAM188B	84182	broad.mit.edu	36	7	30784651	30784651	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032222	exon2	c.C142T	p.R48X	.	.	.
PDE1C	5137	broad.mit.edu	36	7	31884116	31884116	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001191056	exon5	c.G484T	p.A162S	.	.	.
FKBP9	11328	broad.mit.edu	36	7	32986581	32986581	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007270	exon5	c.A784G	p.I262V	.	.	.
FKBP9	11328	broad.mit.edu	36	7	33002428	33002428	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007270	exon7	c.G1168T	p.D390Y	.	.	.
BBS9	27241	broad.mit.edu	36	7	33364001	33364001	+	Missense_Mutation	SNP	G	A	A	rs34218557	byCluster;byFrequency	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033605	exon15	c.G1547A	p.R516Q	.	.	.
NPSR1	387129	broad.mit.edu	36	7	34833567	34833567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207172	exon5	c.G508A	p.A170T	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34964128	34964128	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015283	exon11	c.T953G	p.I318S	.	.	.
HERPUD2	64224	broad.mit.edu	36	7	35700323	35700323	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022373	exon2	c.A143C	p.K48T	.	.	.
ELMO1	9844	broad.mit.edu	36	7	37228784	37228784	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014800	exon10	c.T741G	p.I247M	.	.	.
ELMO1	9844	broad.mit.edu	36	7	37320982	37320982	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014800	exon4	c.A189T	p.E63D	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37868196	37868196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016616	exon7	c.G312A	p.P104P	.	.	.
TXNDC3	51314	broad.mit.edu	36	7	37869589	37869589	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016616	exon8	c.C454T	p.Q152X	.	.	.
SFRP4	6424	broad.mit.edu	36	7	37915767	37915767	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003014	exon5	c.G832T	p.D278Y	.	.	.
STARD3NL	83930	broad.mit.edu	36	7	38221186	38221186	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032016	exon4	c.A336G	p.I112M	.	.	.
AMPH	273	broad.mit.edu	36	7	38481520	38481520	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001635	exon7	c.G526A	p.A176T	.	.	.
VPS41	27072	broad.mit.edu	36	7	38777346	38777346	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014396	exon14	c.A1162T	p.N388Y	.	.	.
C7orf10	79783	broad.mit.edu	36	7	40455463	40455463	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193312	exon9	c.A746T	p.Q249L	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696137	41696137	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002192	exon3	c.G917A	p.R306H	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696264	41696264	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002192	exon3	c.G790T	p.E264X	.	.	.
GLI3	2737	broad.mit.edu	36	7	41971989	41971989	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon15	c.C3207A	p.I1069I	.	.	.
C7orf25	79020	broad.mit.edu	36	7	42915826	42915826	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024054	exon2	c.T1199G	p.L400R	.	.	.
HECW1	23072	broad.mit.edu	36	7	43451270	43451270	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015052	exon11	c.C1974T	p.S658S	.	.	.
HECW1	23072	broad.mit.edu	36	7	43514201	43514201	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015052	exon23	c.C3812T	p.S1271L	.	.	.
BLVRA	644	broad.mit.edu	36	7	43794146	43794146	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000712	exon3	c.C131T	p.S44L	.	.	.
NPC1L1	29881	broad.mit.edu	36	7	44545231	44545231	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101648	exon2	c.G1290T	p.K430N	.	.	.
MYO1G	64005	broad.mit.edu	36	7	44981330	44981330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033054	exon5	c.G586A	p.V196M	.	.	.
RAMP3	10268	broad.mit.edu	36	7	45189522	45189522	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005856	exon3	c.G433A	p.D145N	.	.	.
IGFBP1	3484	broad.mit.edu	36	7	45896819	45896819	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000596	exon2	c.T497C	p.V166A	.	.	.
IGFBP1	3484	broad.mit.edu	36	7	45898066	45898066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000596	exon3	c.G530A	p.R177Q	.	.	.
TNS3	64759	broad.mit.edu	36	7	47310959	47310959	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022748	exon21	c.G2818T	p.E940X	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47863743	47863743	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138295	exon28	c.C4575T	p.S1525S	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47921683	47921683	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138295	exon8	c.T1099C	p.S367P	.	.	.
HUS1	3364	broad.mit.edu	36	7	47974021	47974021	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004507	exon7	c.A667C	p.N223H	.	.	.
SUN3	256979	broad.mit.edu	36	7	48002192	48002192	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030019	exon7	c.T654C	p.G218G	.	.	.
SUN3	256979	broad.mit.edu	36	7	48013397	48013397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030019	exon5	c.G382A	p.E128K	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48255668	48255668	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon10	c.C1241T	p.A414V	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48282254	48282254	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.A2282C	p.N761T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48289363	48289363	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon16	c.G7863T	p.K2621N	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48420720	48420720	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon38	c.G11965A	p.A3989T	.	.	.
ZPBP	11055	broad.mit.edu	36	7	50028392	50028392	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007009	exon6	c.G773T	p.R258I	.	.	.
FIGNL1	63979	broad.mit.edu	36	7	50482369	50482369	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042762	exon4	c.G111T	p.Q37H	.	.	.
RBAK	57786	broad.mit.edu	36	7	5071753	5071753	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021163	exon5	c.C2140A	p.L714I	.	.	.
GRB10	2887	broad.mit.edu	36	7	50739013	50739013	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001549	exon2	c.G138A	p.Q46Q	.	.	.
EGFR	1956	broad.mit.edu	36	7	55228018	55228018	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005228	exon22	c.C2691A	p.V897V	 EGFR,lung,NS,Substitution - Missense,+2 	.	.
CCT6A	908	broad.mit.edu	36	7	56090938	56090938	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009186	exon3	c.C329A	p.S110Y	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57191930	57191930	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033273	exon5	c.G1134A	p.E378E	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57192093	57192093	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033273	exon5	c.C971A	p.P324H	.	.	.
ZNF479	90827	broad.mit.edu	36	7	57192198	57192198	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033273	exon5	c.G866T	p.R289I	.	.	.
RNF216	54476	broad.mit.edu	36	7	5747543	5747543	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207116	exon4	c.A460C	p.N154H	.	.	.
PMS2	5395	broad.mit.edu	36	7	5983844	5983844	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000535	exon14	c.C2346T	p.D782D	.	.	.
PMS2	5395	broad.mit.edu	36	7	6001693	6001693	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000535	exon8	c.A901C	p.K301Q	.	.	.
EIF2AK1	27102	broad.mit.edu	36	7	6043651	6043651	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134335	exon11	c.A1259C	p.K420T	.	.	.
USP42	84132	broad.mit.edu	36	7	6142072	6142072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032172	exon4	c.G517A	p.V173I	.	.	.
ZNF680	340252	broad.mit.edu	36	7	63619461	63619461	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178558	exon4	c.A1106C	p.K369T	.	.	.
ZNF680	340252	broad.mit.edu	36	7	63619526	63619526	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178558	exon4	c.G1041T	p.E347D	.	.	.
ZNF107	51427	broad.mit.edu	36	7	63804488	63804488	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016220	exon7	c.G371T	p.R124I	.	.	.
ZNF138	7697	broad.mit.edu	36	7	63929788	63929788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006524	exon3	c.C655T	p.R219C	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64076074	64076074	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015852	exon4	c.G1310T	p.R437I	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64076998	64076998	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015852	exon4	c.G386T	p.R129I	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64089102	64089102	+	5'Flank	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007253	exon2	c.G1738A	p.E580K	.	.	.
ZNF117	51351	broad.mit.edu	36	7	64089411	64089411	+	5'Flank	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007253	exon2	c.G1429T	p.D477Y	.	.	.
KDELR2	11014	broad.mit.edu	36	7	6475890	6475890	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100603	exon3	c.C213A	p.S71S	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69865985	69865985	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015570	exon7	c.G936A	p.E312E	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70780135	70780135	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022479	exon9	c.C1408T	p.R470C	.	.	.
CALN1	83698	broad.mit.edu	36	7	70913342	70913342	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017440	exon5	c.G447A	p.T149T	.	.	.
CALN1	83698	broad.mit.edu	36	7	71126581	71126581	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017440	exon4	c.G372T	p.W124C	.	.	.
FKBP6	8468	broad.mit.edu	36	7	72382112	72382112	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135211	exon4	c.C274T	p.L92L	.	.	.
DNAJC30	84277	broad.mit.edu	36	7	72735108	72735108	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032317	exon1	c.G582T	p.E194D	.	.	.
ELN	2006	broad.mit.edu	36	7	73100821	73100821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081753	exon15	c.C813T	p.F271F	.	.	.
HIP1	3092	broad.mit.edu	36	7	75012390	75012390	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005338	exon26	c.G2592T	p.K864N	.	.	.
COL28A1	340267	broad.mit.edu	36	7	7537766	7537766	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037763	exon3	c.C419A	p.A140D	.	.	.
ZP3	7784	broad.mit.edu	36	7	75892476	75892476	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007155	exon2	c.G106T	p.E36X	.	.	.
MIOS	54468	broad.mit.edu	36	7	7602433	7602433	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019005	exon11	c.C2217A	p.F739L	.	.	.
CCDC146	57639	broad.mit.edu	36	7	76723684	76723684	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020879	exon6	c.T606G	p.D202E	.	.	.
PION	54103	broad.mit.edu	36	7	76829888	76829888	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017439	exon13	c.G897A	p.P299P	.	.	.
PTPN12	5782	broad.mit.edu	36	7	77050862	77050862	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002835	exon4	c.G340T	p.V114L	.	.	.
GNAT3	346562	broad.mit.edu	36	7	79925940	79925940	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102386	exon8	c.G1048T	p.D350Y	.	.	.
HGF	3082	broad.mit.edu	36	7	81173603	81173603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000601	exon15	c.C1693T	p.L565F	.	.	.
HGF	3082	broad.mit.edu	36	7	81177483	81177483	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000601	exon13	c.C1457A	p.S486Y	.	.	.
HGF	3082	broad.mit.edu	36	7	81184489	81184489	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000601	exon11	c.C1400A	p.S467Y	.	.	.
ICA1	3382	broad.mit.edu	36	7	8120096	8120096	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004968	exon14	c.C1434T	p.H478H	.	.	.
HGF	3082	broad.mit.edu	36	7	81224526	81224526	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010934	exon4	c.G397T	p.G133X	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81429199	81429199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000722	exon36	c.C2913T	p.F971F	.	.	.
PCLO	27445	broad.mit.edu	36	7	82417499	82417499	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon6	c.G10341T	p.T3447T	.	.	.
PCLO	27445	broad.mit.edu	36	7	82420262	82420262	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.T7943G	p.F2648C	.	.	.
PCLO	27445	broad.mit.edu	36	7	82422346	82422346	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.G5859T	p.E1953D	.	.	.
PCLO	27445	broad.mit.edu	36	7	82424139	82424139	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon5	c.A4066G	p.S1356G	.	.	.
PCLO	27445	broad.mit.edu	36	7	82623133	82623133	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon2	c.A760C	p.T254P	.	.	.
SEMA3E	9723	broad.mit.edu	36	7	82936510	82936510	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012431	exon3	c.G321T	p.M107I	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83478317	83478317	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006080	exon9	c.G952T	p.D318Y	.	.	.
SEMA3A	10371	broad.mit.edu	36	7	83602075	83602075	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006080	exon2	c.G241A	p.D81N	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84482463	84482463	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152754	exon14	c.A1551T	p.Q517H	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84565107	84565107	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152754	exon2	c.G262T	p.D88Y	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86377217	86377217	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152748	exon15	c.G1705T	p.D569Y	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86380427	86380427	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152748	exon13	c.G1260T	p.K420N	.	.	.
C7orf23	79161	broad.mit.edu	36	7	86665248	86665248	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024315	exon3	c.T179C	p.L60S	.	.	.
ABCB4	5244	broad.mit.edu	36	7	86869460	86869460	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018849	exon28	c.T3749C	p.V1250A	.	.	.
ABCB1	5243	broad.mit.edu	36	7	87017998	87017998	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000927	exon11	c.A1092C	p.E364D	.	.	.
SLC25A40	55972	broad.mit.edu	36	7	87317177	87317177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018843	exon6	c.G287A	p.R96Q	.	.	.
NXPH1	30010	broad.mit.edu	36	7	8757278	8757278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152745	exon3	c.G170A	p.R57Q	.	.	.
NXPH1	30010	broad.mit.edu	36	7	8757670	8757670	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152745	exon3	c.G562T	p.D188Y	.	.	.
MGC26647	219557	broad.mit.edu	36	7	88261482	88261482	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152706	exon2	c.A711G	p.I237M	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88800795	88800795	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon4	c.G563T	p.R188L	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88801078	88801078	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon4	c.T846G	p.N282K	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88804254	88804254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon4	c.C4022T	p.A1341V	.	.	.
STEAP1	26872	broad.mit.edu	36	7	89631812	89631812	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012449	exon5	c.T848G	p.F283C	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89722700	89722700	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039706	exon2	c.C148T	p.R50C	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89738779	89738779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039706	exon7	c.A536G	p.Y179C	.	.	.
CLDN12	9069	broad.mit.edu	36	7	89880482	89880482	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185072	exon4	c.T556C	p.F186L	.	.	.
FZD1	8321	broad.mit.edu	36	7	90733601	90733601	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003505	exon1	c.C1470T	p.F490F	.	.	.
MTERF	7978	broad.mit.edu	36	7	91340959	91340959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006980	exon3	c.G1085A	p.R362Q	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91469363	91469363	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon8	c.A2196G	p.R732R	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91506000	91506000	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon17	c.A4670C	p.K1557T	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91512346	91512346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon21	c.C5251T	p.R1751C	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91549802	91549802	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon32	c.G8026T	p.E2676X	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91553555	91553555	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon37	c.C9078A	p.F3026L	.	.	.
C7orf64	84060	broad.mit.edu	36	7	91996813	91996813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032120	exon2	c.G199A	p.A67T	.	.	.
FAM133B	257415	broad.mit.edu	36	7	92045572	92045572	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152789	exon4	c.A273G	p.R91R	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92569392	92569392	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193307	exon2	c.C3955A	p.L1319I	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92571360	92571360	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193307	exon2	c.A1987G	p.T663A	.	.	.
SAMD9	54809	broad.mit.edu	36	7	92571479	92571479	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193307	exon2	c.C1868A	p.S623Y	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92598651	92598651	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.C4570T	p.R1524C	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92601579	92601579	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.C1642A	p.L548I	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92602206	92602206	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.C1015A	p.L339I	.	.	.
SAMD9L	219285	broad.mit.edu	36	7	92602815	92602815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152703	exon5	c.C406T	p.L136F	.	.	.
CCDC132	55610	broad.mit.edu	36	7	92764480	92764480	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017667	exon16	c.G1350T	p.K450N	.	.	.
CCDC132	55610	broad.mit.edu	36	7	92816051	92816051	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017667	exon24	c.C2300A	p.S767Y	.	.	.
CALCR	799	broad.mit.edu	36	7	92910963	92910963	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001164737	exon11	c.G793C	p.A265P	.	.	.
CASD1	64921	broad.mit.edu	36	7	94012845	94012845	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022900	exon12	c.G1529A	p.R510Q	.	.	.
SGCE	8910	broad.mit.edu	36	7	94095550	94095550	+	Missense_Mutation	SNP	C	T	T	rs11548285	byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099400	exon3	c.G290A	p.R97Q	.	.	.
PEG10	23089	broad.mit.edu	36	7	94131473	94131473	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015068	exon2	c.C669T	p.V223V	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94377671	94377671	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon1	c.G310T	p.E104X	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94378505	94378505	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166163	exon1	c.G1144T	p.E382X	.	.	.
PPP1R9A	55607	broad.mit.edu	36	7	94736618	94736618	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166160	exon14	c.C2987A	p.P996Q	.	.	.
PON1	5444	broad.mit.edu	36	7	94775317	94775317	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000446	exon6	c.C640T	p.R214X	.	.	.
PON1	5444	broad.mit.edu	36	7	94782593	94782593	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000446	exon4	c.G347T	p.G116V	.	.	.
ASB4	51666	broad.mit.edu	36	7	95003787	95003787	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016116	exon4	c.G1081T	p.D361Y	.	.	.
DYNC1I1	1780	broad.mit.edu	36	7	95506546	95506546	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135557	exon13	c.C1326A	p.V442V	.	.	.
SLC25A13	10165	broad.mit.edu	36	7	95651600	95651600	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014251	exon11	c.G1102T	p.E368X	.	.	.
DLX5	1749	broad.mit.edu	36	7	96488308	96488308	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005221	exon3	c.A546C	p.K182N	.	.	.
ACN9	57001	broad.mit.edu	36	7	96648293	96648293	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020186	exon2	c.G208A	p.E70K	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97608657	97608657	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014916	exon3	c.A244G	p.N82D	.	.	.
LMTK2	22853	broad.mit.edu	36	7	97659674	97659674	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014916	exon11	c.T1961G	p.L654X	.	.	.
BAIAP2L1	55971	broad.mit.edu	36	7	97777721	97777721	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018842	exon9	c.G927A	p.P309P	.	.	.
TMEM130	222865	broad.mit.edu	36	7	98295772	98295772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134450	exon3	c.G517A	p.A173T	.	.	.
TMEM130	222865	broad.mit.edu	36	7	98298724	98298724	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134450	exon2	c.C321A	p.V107V	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98424433	98424433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003496	exon61	c.C9424T	p.R3142W	.	.	.
ARPC1A	10552	broad.mit.edu	36	7	98768920	98768920	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006409	exon2	c.T8C	p.L3P	.	.	.
ZNF655	79027	broad.mit.edu	36	7	99008397	99008397	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083956	exon4	c.G835T	p.E279X	.	.	.
CYP3A5	1577	broad.mit.edu	36	7	99099586	99099586	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000777	exon8	c.A739C	p.N247H	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99155901	99155901	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000765	exon4	c.G289T	p.E97X	.	.	.
CYP3A7	1551	broad.mit.edu	36	7	99157886	99157886	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000765	exon3	c.G187T	p.E63X	.	.	.
COPS6	10980	broad.mit.edu	36	7	99525284	99525284	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006833	exon3	c.T313C	p.Y105H	.	.	.
GPC2	221914	broad.mit.edu	36	7	99609520	99609520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152742	exon5	c.C766T	p.R256C	.	.	.
STAG3	10734	broad.mit.edu	36	7	99640935	99640935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012447	exon29	c.G3230A	p.R1077H	.	.	.
ZCWPW1	55063	broad.mit.edu	36	7	99836702	99836702	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017984	exon18	c.C1818T	p.D606D	.	.	.
LRCH4	4034	broad.mit.edu	36	7	100013479	100013479	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	100396783	100396783	+	IGR	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ATXN7L1	222255	broad.mit.edu	36	7	105304241	105304241	+	5'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PRKAR2B	5577	broad.mit.edu	36	7	106578711	106578711	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
BCAP29	55973	broad.mit.edu	36	7	107049486	107049486	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC26A4	5172	broad.mit.edu	36	7	107111127	107111127	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111236694	111236694	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TES	26136	broad.mit.edu	36	7	115645059	115645059	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	120868235	120868235	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PTPRZ1	5803	broad.mit.edu	36	7	121431960	121431960	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
POT1	25913	broad.mit.edu	36	7	124324465	124324465	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SND1	27044	broad.mit.edu	36	7	127509173	127509173	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UBE2H	7328	broad.mit.edu	36	7	129266276	129266276	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CPA2	1358	broad.mit.edu	36	7	129709271	129709271	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COPG2	26958	broad.mit.edu	36	7	129933889	129933889	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131468343	131468343	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CHCHD3	54927	broad.mit.edu	36	7	132359935	132359935	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NUP205	23165	broad.mit.edu	36	7	134958225	134958225	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138044902	138044902	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ATP6V0A4	50617	broad.mit.edu	36	7	138069412	138069412	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBN2	254048	broad.mit.edu	36	7	138587347	138587347	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	141709120	141709120	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	141760773	141760773	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	141943529	141943529	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	141949296	141949296	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	141952432	141952432	+	IGR	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	141969917	141969917	+	IGR	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	142044281	142044281	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	142103051	142103051	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CLCN1	1180	broad.mit.edu	36	7	142754120	142754120	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
IGF2BP3	10643	broad.mit.edu	36	7	23349856	23349856	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C7orf46	340277	broad.mit.edu	36	7	23704331	23704331	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
STK31	56164	broad.mit.edu	36	7	23777275	23777275	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STK31	56164	broad.mit.edu	36	7	23794284	23794284	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31560996	31560996	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DPY19L1	23333	broad.mit.edu	36	7	34953760	34953760	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TBX20	57057	broad.mit.edu	36	7	35237633	35237633	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ELMO1	9844	broad.mit.edu	36	7	36900975	36900975	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TARP	445347	broad.mit.edu	36	7	38323185	38323185	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	7	38364936	38364936	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
BLVRA	644	broad.mit.edu	36	7	43777302	43777302	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
OGDH	4967	broad.mit.edu	36	7	44707656	44707656	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TNS3	64759	broad.mit.edu	36	7	47374486	47374486	+	Splice_Site	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47841248	47841248	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48208519	48208519	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48345557	48345557	+	Intron	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48384566	48384566	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
LOC389458	389458	broad.mit.edu	36	7	5079083	5079083	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
POM121	9883	broad.mit.edu	36	7	72048451	72048451	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POR	5447	broad.mit.edu	36	7	75411082	75411082	+	RNA	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PDK4	5166	broad.mit.edu	36	7	95054968	95054968	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98372703	98372703	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TRRAP	8295	broad.mit.edu	36	7	98381317	98381317	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121365161	121365162	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon32	c.3930_3931insA	p.N1310fs	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100184381	100184381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon5	c.G437A	p.R146Q	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100858279	100858279	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon41	c.T7348G	p.F2450V	.	.	.
RGS22	26166	broad.mit.edu	36	8	101085434	101085434	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015668	exon17	c.G2523T	p.W841C	.	.	.
RGS22	26166	broad.mit.edu	36	8	101134209	101134209	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015668	exon10	c.C1686T	p.I562I	.	.	.
FBXO43	286151	broad.mit.edu	36	8	101223556	101223556	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029860	exon2	c.G102T	p.K34N	.	.	.
SPAG1	6674	broad.mit.edu	36	8	101306686	101306686	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003114	exon14	c.G1798T	p.E600X	.	.	.
SNX31	169166	broad.mit.edu	36	8	101693464	101693464	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152628	exon7	c.T551C	p.L184P	.	.	.
SNX31	169166	broad.mit.edu	36	8	101694426	101694426	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152628	exon6	c.C496T	p.R166W	.	.	.
PABPC1	26986	broad.mit.edu	36	8	101791073	101791073	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002568	exon8	c.A1035C	p.E345D	.	.	.
UBR5	51366	broad.mit.edu	36	8	103441536	103441536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015902	exon5	c.G325A	p.D109N	.	.	.
FZD6	8323	broad.mit.edu	36	8	104411403	104411403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164616	exon7	c.C1790T	p.S597F	.	.	.
CTHRC1	115908	broad.mit.edu	36	8	104459635	104459635	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138455	exon3	c.C577T	p.R193C	.	.	.
DCAF13	25879	broad.mit.edu	36	8	104522889	104522889	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015420	exon10	c.T1573C	p.Y525H	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104847673	104847673	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon3	c.C430A	p.L144I	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105042476	105042476	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001100117	exon15	c.G2709T	p.K903N	.	.	.
TM7SF4	81501	broad.mit.edu	36	8	105430290	105430290	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030788	exon2	c.G334T	p.E112X	.	.	.
TM7SF4	81501	broad.mit.edu	36	8	105437536	105437536	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030788	exon4	c.C1347A	p.F449L	.	.	.
SOX7	83595	broad.mit.edu	36	8	10621532	10621532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031439	exon2	c.C293T	p.A98V	.	.	.
PINX1	54984	broad.mit.edu	36	8	10660374	10660374	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017884	exon7	c.G934A	p.A312T	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106882821	106882821	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012082	exon8	c.T1335G	p.T445T	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106884174	106884174	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012082	exon8	c.G2688A	p.P896P	.	.	.
ZFPM2	23414	broad.mit.edu	36	8	106884239	106884239	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012082	exon8	c.A2753T	p.K918I	.	.	.
XKR6	286046	broad.mit.edu	36	8	10793334	10793334	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173683	exon3	c.C1464T	p.I488I	.	.	.
XKR6	286046	broad.mit.edu	36	8	10793634	10793634	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173683	exon3	c.C1164A	p.I388I	.	.	.
RSPO2	340419	broad.mit.edu	36	8	109070533	109070533	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178565	exon3	c.G210T	p.Q70H	.	.	.
TTC35	9694	broad.mit.edu	36	8	109558230	109558230	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014673	exon9	c.G635T	p.R212I	.	.	.
TTC35	9694	broad.mit.edu	36	8	109567964	109567964	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014673	exon11	c.C855T	p.V285V	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110516635	110516635	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon29	c.A3381G	p.G1127G	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110525116	110525116	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon37	c.G4600C	p.A1534P	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110526547	110526547	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon38	c.C5273A	p.S1758Y	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110599787	110599787	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_177531	exon73	c.C11905T	p.P3969S	.	.	.
FAM167A	83648	broad.mit.edu	36	8	11319481	11319481	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053279	exon3	c.A456G	p.K152K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113387481	113387481	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon51	c.G8002T	p.E2668X	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113387580	113387580	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon51	c.C7903A	p.P2635T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113395867	113395867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon48	c.G7516A	p.E2506K	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113766911	113766911	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon15	c.T2382G	p.A794A	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114057302	114057302	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon7	c.A1282C	p.R428R	.	.	.
CSMD3	114788	broad.mit.edu	36	8	114255254	114255254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon4	c.C582T	p.F194F	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116686287	116686287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon4	c.G1084A	p.E362K	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116700610	116700610	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon3	c.G890A	p.R297H	 TRPS1,lung,NS,Substitution - Missense,0 	.	.
TRPS1	7227	broad.mit.edu	36	8	116701338	116701338	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon3	c.G162A	p.Q54Q	.	.	.
UTP23	84294	broad.mit.edu	36	8	117853029	117853029	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032334	exon3	c.G517T	p.E173X	.	.	.
EXT1	2131	broad.mit.edu	36	8	118894354	118894354	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000127	exon8	c.G1660A	p.D554N	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12032882	12032882	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201402	exon1	c.C797T	p.T266M	.	.	.
USP17L2	377630	broad.mit.edu	36	8	12033343	12033343	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201402	exon1	c.G336T	p.E112D	.	.	.
NOV	4856	broad.mit.edu	36	8	120504446	120504446	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002514	exon5	c.A967G	p.K323E	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120672027	120672027	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130863	exon13	c.G1106T	p.R369I	.	.	.
ENPP2	5168	broad.mit.edu	36	8	120677421	120677421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006209	exon12	c.G975T	p.E325D	.	.	.
TAF2	6873	broad.mit.edu	36	8	120866650	120866650	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003184	exon15	c.G1831T	p.E611X	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121249619	121249619	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon5	c.G388A	p.V130I	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121359562	121359562	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon27	c.G3245T	p.R1082I	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121423838	121423838	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon44	c.G4860A	p.A1620A	.	.	.
ZHX2	22882	broad.mit.edu	36	8	124034805	124034805	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014943	exon3	c.C1874A	p.S625Y	.	.	.
WDR67	93594	broad.mit.edu	36	8	124233274	124233274	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145088	exon20	c.C2827A	p.L943I	.	.	.
ZHX1	11244	broad.mit.edu	36	8	124335185	124335185	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017926	exon3	c.G2183A	p.S728N	.	.	.
ZHX1	11244	broad.mit.edu	36	8	124335966	124335966	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017926	exon3	c.C1402T	p.R468W	.	.	.
ZHX1	11244	broad.mit.edu	36	8	124336920	124336920	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017926	exon3	c.G448T	p.D150Y	.	.	.
ZHX1	11244	broad.mit.edu	36	8	124337162	124337162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017926	exon3	c.G206A	p.G69E	.	.	.
WDYHV1	55093	broad.mit.edu	36	8	124522757	124522757	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018024	exon6	c.G539A	p.S180N	.	.	.
FBXO32	114907	broad.mit.edu	36	8	124594660	124594660	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058229	exon6	c.C610A	p.L204I	.	.	.
KLHL38	340359	broad.mit.edu	36	8	124733240	124733240	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081675	exon1	c.C1108T	p.L370L	.	.	.
FAM91A1	157769	broad.mit.edu	36	8	124890346	124890346	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144963	exon22	c.G2170A	p.E724K	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125092023	125092023	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039112	exon14	c.A1709C	p.N570T	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125121367	125121367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039112	exon20	c.G2528A	p.S843N	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125184687	125184687	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039112	exon39	c.C5245T	p.R1749C	.	.	.
TMEM65	157378	broad.mit.edu	36	8	125408789	125408789	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194291	exon3	c.T404G	p.I135S	.	.	.
TRMT12	55039	broad.mit.edu	36	8	125533559	125533559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017956	exon1	c.G1210A	p.A404T	.	.	.
RNF139	11236	broad.mit.edu	36	8	125568221	125568221	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007218	exon2	c.T1150C	p.S384P	.	.	.
ZNF572	137209	broad.mit.edu	36	8	126058348	126058348	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152412	exon3	c.C657T	p.P219P	.	.	.
ZNF572	137209	broad.mit.edu	36	8	126058965	126058965	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152412	exon3	c.C1274T	p.S425F	.	.	.
KIAA0196	9897	broad.mit.edu	36	8	126138214	126138214	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014846	exon16	c.T1903G	p.F635V	.	.	.
C8orf79	57604	broad.mit.edu	36	8	12923227	12923227	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099677	exon2	c.G290T	p.R97I	.	.	.
DLC1	10395	broad.mit.edu	36	8	12987737	12987737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon18	c.C4541T	p.S1514F	.	.	.
DLC1	10395	broad.mit.edu	36	8	12992326	12992326	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon15	c.C3880T	p.R1294C	.	.	.
DLC1	10395	broad.mit.edu	36	8	12993269	12993269	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon14	c.G3784T	p.D1262Y	.	.	.
DLC1	10395	broad.mit.edu	36	8	13002249	13002249	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon9	c.C1968T	p.H656H	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130834243	130834243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031415	exon7	c.G727A	p.E243K	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130857684	130857684	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031415	exon3	c.A250G	p.S84G	.	.	.
FAM49B	51571	broad.mit.edu	36	8	130933667	130933667	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016623	exon11	c.C556T	p.R186X	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131161347	131161347	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018482	exon25	c.A2625G	p.G875G	.	.	.
ASAP1	50807	broad.mit.edu	36	8	131197128	131197128	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018482	exon22	c.C2100T	p.H700H	.	.	.
ADCY8	114	broad.mit.edu	36	8	132121240	132121240	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115	exon1	c.C522A	p.F174L	.	.	.
OC90	729330	broad.mit.edu	36	8	133114583	133114583	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080399	exon11	c.G744A	p.E248E	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133261610	133261610	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon4	c.C753T	p.G251G	.	.	.
TMEM71	137835	broad.mit.edu	36	8	133809283	133809283	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144649	exon6	c.C562T	p.L188F	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133876006	133876006	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032205	exon3	c.C252A	p.F84L	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133923952	133923952	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016018	exon19	c.C2398A	p.H800N	.	.	.
TG	7038	broad.mit.edu	36	8	133968780	133968780	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon9	c.G1981T	p.D661Y	.	.	.
TG	7038	broad.mit.edu	36	8	134000920	134000920	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon21	c.C4496A	p.T1499N	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401286	13401286	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon2	c.G666T	p.E222D	.	.	.
DLC1	10395	broad.mit.edu	36	8	13401435	13401435	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon2	c.G517T	p.A173S	.	.	.
SLA	6503	broad.mit.edu	36	8	134120036	134120036	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001045556	exon9	c.G746A	p.R249Q	.	.	.
WISP1	8840	broad.mit.edu	36	8	134302265	134302265	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003882	exon3	c.C609T	p.F203F	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135719088	135719088	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174157	exon3	c.G246T	p.K82N	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139675573	139675573	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon63	c.C4484A	p.S1495Y	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139695319	139695319	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon56	c.G3951T	p.Q1317H	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139728104	139728104	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152888	exon47	c.G3451T	p.E1151X	.	.	.
SGCZ	137868	broad.mit.edu	36	8	14139510	14139510	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139167	exon4	c.G386T	p.R129I	.	.	.
TRAPPC9	83696	broad.mit.edu	36	8	141484874	141484874	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031466	exon6	c.T1286G	p.I429S	.	.	.
PTK2	5747	broad.mit.edu	36	8	141958912	141958912	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153831	exon4	c.A202G	p.I68V	.	.	.
DENND3	22898	broad.mit.edu	36	8	142247321	142247321	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014957	exon13	c.A1550C	p.K517T	.	.	.
SLC45A4	57210	broad.mit.edu	36	8	142290877	142290877	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080431	exon8	c.C2243A	p.S748Y	.	.	.
CYP11B2	1585	broad.mit.edu	36	8	143996234	143996234	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000498	exon1	c.G25A	p.V9M	.	.	.
TOP1MT	116447	broad.mit.edu	36	8	144479038	144479038	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052963	exon5	c.G524T	p.G175V	.	.	.
GPAA1	8733	broad.mit.edu	36	8	145210850	145210850	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003801	exon5	c.G535T	p.D179Y	.	.	.
ZNF251	90987	broad.mit.edu	36	8	145917862	145917862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138367	exon5	c.G1992T	p.K664N	.	.	.
ZNF7	7553	broad.mit.edu	36	8	146038357	146038357	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003416	exon5	c.G1061T	p.R354I	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15525066	15525066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006765	exon2	c.G245A	p.R82Q	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15564069	15564069	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006765	exon5	c.A601G	p.T201A	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15632560	15632560	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006765	exon7	c.G813A	p.G271G	.	.	.
MSR1	4481	broad.mit.edu	36	8	16056944	16056944	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002445	exon6	c.G898T	p.G300C	.	.	.
MSR1	4481	broad.mit.edu	36	8	16077080	16077080	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002445	exon3	c.T204G	p.I68M	.	.	.
PDGFRL	5157	broad.mit.edu	36	8	17530402	17530402	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006207	exon5	c.T632C	p.F211S	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17656507	17656507	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon2	c.G1090T	p.V364L	.	.	.
MTUS1	57509	broad.mit.edu	36	8	17656939	17656939	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001925	exon2	c.G658T	p.E220X	.	.	.
FGL1	2267	broad.mit.edu	36	8	17770516	17770516	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147203	exon7	c.C600T	p.Y200Y	.	.	.
FGL1	2267	broad.mit.edu	36	8	17783920	17783920	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147203	exon3	c.C112T	p.R38C	.	.	.
ZNF596	169270	broad.mit.edu	36	8	186079	186079	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173539	exon6	c.G1232T	p.R411I	.	.	.
INTS10	55174	broad.mit.edu	36	8	19745894	19745894	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018142	exon15	c.G1747A	p.D583N	.	.	.
LPL	4023	broad.mit.edu	36	8	19857648	19857648	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000237	exon6	c.G792T	p.V264V	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2005016	2005016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003970	exon8	c.G786A	p.P262P	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20074886	20074886	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142324	exon7	c.A665G	p.D222G	.	.	.
SLC18A1	6570	broad.mit.edu	36	8	20076174	20076174	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142324	exon6	c.A609T	p.G203G	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2064602	2064602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003970	exon32	c.G3775A	p.E1259K	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22229774	22229774	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135721	exon19	c.C2280T	p.F760F	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22267792	22267792	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135721	exon22	c.C2721A	p.V907V	.	.	.
PEBP4	157310	broad.mit.edu	36	8	22833669	22833669	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144962	exon3	c.G231A	p.P77P	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22940736	22940736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003842	exon7	c.G791A	p.R264Q	.	.	.
TNFRSF10A	8797	broad.mit.edu	36	8	23125640	23125640	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003844	exon2	c.C337T	p.L113F	.	.	.
ENTPD4	9583	broad.mit.edu	36	8	23347785	23347785	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128930	exon12	c.C1588A	p.L530I	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24402680	24402680	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon12	c.T1210G	p.F404V	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24405374	24405374	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon14	c.C1425G	p.G475G	.	.	.
ADAM7	8756	broad.mit.edu	36	8	24405456	24405456	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003817	exon14	c.A1507G	p.K503E	.	.	.
NEFM	4741	broad.mit.edu	36	8	24827966	24827966	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005382	exon1	c.C755T	p.S252L	.	.	.
DOCK5	80005	broad.mit.edu	36	8	25210004	25210004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024940	exon7	c.G529A	p.E177K	.	.	.
CDCA2	157313	broad.mit.edu	36	8	25375587	25375587	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152562	exon4	c.G333A	p.Q111Q	.	.	.
EBF2	64641	broad.mit.edu	36	8	25801402	25801402	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022659	exon9	c.C755T	p.T252I	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26683898	26683898	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033304	exon2	c.G1086A	p.P362P	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26684055	26684055	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033304	exon2	c.T929C	p.I310T	.	.	.
TRIM35	23087	broad.mit.edu	36	8	27207643	27207643	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_171982	exon3	c.G633T	p.E211D	.	.	.
CHRNA2	1135	broad.mit.edu	36	8	27383266	27383266	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000742	exon3	c.C223T	p.R75C	.	.	.
ESCO2	157570	broad.mit.edu	36	8	27690548	27690548	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017420	exon3	c.G804A	p.E268E	.	.	.
ESCO2	157570	broad.mit.edu	36	8	27706119	27706119	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017420	exon9	c.G1369T	p.E457X	.	.	.
PBK	55872	broad.mit.edu	36	8	27736570	27736570	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018492	exon4	c.G224A	p.R75Q	.	.	.
PBK	55872	broad.mit.edu	36	8	27746515	27746515	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018492	exon2	c.A35G	p.K12R	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2796157	2796157	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon66	c.G10088T	p.X3363L	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2802676	2802676	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon63	c.C9764T	p.S3255L	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2808293	2808293	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon60	c.G9313A	p.E3105K	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2810830	2810830	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon59	c.G9155A	p.R3052Q	.	.	.
FZD3	7976	broad.mit.edu	36	8	28434254	28434254	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145866	exon3	c.G370T	p.D124Y	.	.	.
FZD3	7976	broad.mit.edu	36	8	28476328	28476328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145866	exon7	c.C1882T	p.R628W	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2897487	2897487	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon50	c.C7565A	p.S2522X	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29043987	29043987	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015254	exon24	c.A3057G	p.G1019G	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29069203	29069203	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015254	exon14	c.G1494A	p.T498T	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29102038	29102038	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015254	exon5	c.G229T	p.D77Y	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2951461	2951461	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon46	c.T6946C	p.X2316R	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2963336	2963336	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon42	c.G6423T	p.K2141N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30821057	30821057	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.C5019T	p.N1673N	.	.	.
TEX15	56154	broad.mit.edu	36	8	30822686	30822686	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.A3390G	p.E1130E	.	.	.
WRN	7486	broad.mit.edu	36	8	31036286	31036286	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000553	exon3	c.G172A	p.D58N	.	.	.
NRG1	3084	broad.mit.edu	36	8	32625283	32625283	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013959	exon1	c.T505G	p.S169A	.	.	.
NRG1	3084	broad.mit.edu	36	8	32733515	32733515	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160008	exon9	c.C847T	p.R283X	.	.	.
C8orf41	80185	broad.mit.edu	36	8	33486829	33486829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025115	exon2	c.C811T	p.L271F	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35545278	35545278	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon3	c.G443T	p.R148M	.	.	.
UNC5D	137970	broad.mit.edu	36	8	35683000	35683000	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080872	exon8	c.C1096A	p.L366I	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3598881	3598881	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon6	c.G910T	p.G304X	.	.	.
GPR124	25960	broad.mit.edu	36	8	37791638	37791638	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032777	exon2	c.G333A	p.E111E	.	.	.
BRF2	55290	broad.mit.edu	36	8	37823569	37823569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018310	exon3	c.C497T	p.S166F	.	.	.
WHSC1L1	54904	broad.mit.edu	36	8	38281966	38281966	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023034	exon13	c.C2397T	p.C799C	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3876921	3876921	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon4	c.A524G	p.Y175C	.	.	.
HTRA4	203100	broad.mit.edu	36	8	38951773	38951773	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153692	exon2	c.C533T	p.A178V	.	.	.
TM2D2	83877	broad.mit.edu	36	8	38972133	38972133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031940	exon2	c.C47T	p.A16V	.	.	.
ADAM9	8754	broad.mit.edu	36	8	39018643	39018643	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003816	exon12	c.T1152C	p.S384S	.	.	.
ADAM32	203102	broad.mit.edu	36	8	39210664	39210664	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145004	exon16	c.G1724A	p.R575Q	.	.	.
ADAM32	203102	broad.mit.edu	36	8	39231182	39231182	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145004	exon18	c.G1995T	p.E665D	.	.	.
ADAM18	8749	broad.mit.edu	36	8	39606054	39606054	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014237	exon7	c.A527C	p.K176T	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39797739	39797739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001464	exon6	c.C452T	p.S151F	.	.	.
ZMAT4	79698	broad.mit.edu	36	8	40674065	40674065	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024645	exon4	c.G205A	p.D69N	.	.	.
ANK1	286	broad.mit.edu	36	8	41649512	41649512	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020475	exon38	c.A4613G	p.D1538G	.	.	.
MYST3	7994	broad.mit.edu	36	8	41908930	41908930	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099413	exon18	c.G5965A	p.A1989T	.	.	.
PLAT	5327	broad.mit.edu	36	8	42164627	42164627	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033011	exon4	c.C180T	p.F60F	.	.	.
IKBKB	3551	broad.mit.edu	36	8	42295948	42295948	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190720	exon13	c.G1362T	p.M454I	.	.	.
C8orf40	114926	broad.mit.edu	36	8	42520883	42520883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135675	exon2	c.C111T	p.F37F	.	.	.
POTEA	340441	broad.mit.edu	36	8	43274874	43274874	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005365	exon4	c.A645C	p.K215N	.	.	.
POTEA	340441	broad.mit.edu	36	8	43316188	43316188	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005365	exon10	c.G1197T	p.K399N	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48934774	48934774	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon46	c.C6157A	p.H2053N	.	.	.
PRKDC	5591	broad.mit.edu	36	8	48964163	48964163	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon33	c.A4244G	p.X1415W	.	.	.
MCM4	4173	broad.mit.edu	36	8	49044934	49044934	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182746	exon11	c.C1198T	p.R400X	.	.	.
SNTG1	54212	broad.mit.edu	36	8	51477395	51477395	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018967	exon4	c.G100T	p.D34Y	.	.	.
ST18	9705	broad.mit.edu	36	8	53225027	53225027	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014682	exon16	c.C1870A	p.L624M	.	.	.
OPRK1	4986	broad.mit.edu	36	8	54304848	54304848	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000912	exon4	c.C705T	p.F235F	.	.	.
SOX17	64321	broad.mit.edu	36	8	55533540	55533540	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022454	exon1	c.G289A	p.E97K	.	.	.
RP1	6101	broad.mit.edu	36	8	55701217	55701217	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.A2222C	p.N741T	.	.	.
RP1	6101	broad.mit.edu	36	8	55704727	55704727	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006269	exon4	c.A5732G	p.Y1911C	.	.	.
TGS1	96764	broad.mit.edu	36	8	56888162	56888162	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024831	exon12	c.T2370G	p.I790M	.	.	.
MOS	4342	broad.mit.edu	36	8	57188436	57188436	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005372	exon1	c.C660T	p.F220F	.	.	.
PLAG1	5324	broad.mit.edu	36	8	57241702	57241702	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114635	exon3	c.C911A	p.P304H	.	.	.
IMPAD1	54928	broad.mit.edu	36	8	58039069	58039069	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017813	exon5	c.C917G	p.A306G	.	.	.
CYP7A1	1581	broad.mit.edu	36	8	59567536	59567536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000780	exon5	c.G1145A	p.R382Q	.	.	.
SDCBP	6386	broad.mit.edu	36	8	59655720	59655720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007070	exon8	c.C838T	p.R280W	.	.	.
TOX	9760	broad.mit.edu	36	8	59882882	59882882	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014729	exon9	c.A1559G	p.D520G	.	.	.
TOX	9760	broad.mit.edu	36	8	59890782	59890782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014729	exon7	c.C1061T	p.S354L	.	.	.
CHD7	55636	broad.mit.edu	36	8	61911198	61911198	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017780	exon16	c.A3791C	p.K1264T	.	.	.
ASPH	444	broad.mit.edu	36	8	62623304	62623304	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164750	exon21	c.G1557A	p.E519E	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6283979	6283979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024596	exon6	c.G534T	p.K178N	.	.	.
MCPH1	79648	broad.mit.edu	36	8	6290178	6290178	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024596	exon8	c.T1527G	p.C509W	.	.	.
NKAIN3	286183	broad.mit.edu	36	8	63654770	63654770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173688	exon2	c.G173A	p.R58K	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65690232	65690232	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004820	exon4	c.A962G	p.E321G	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65690825	65690825	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004820	exon3	c.T827C	p.V276A	.	.	.
MTFR1	9650	broad.mit.edu	36	8	66782756	66782756	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001145838	exon5	c.G790T	p.G264X	.	.	.
PDE7A	5150	broad.mit.edu	36	8	66794083	66794083	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002603	exon13	c.C1367A	p.S456X	.	.	.
DNAJC5B	85479	broad.mit.edu	36	8	67151528	67151528	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033105	exon4	c.G199A	p.A67T	.	.	.
C8orf46	254778	broad.mit.edu	36	8	67584926	67584926	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152765	exon4	c.C322T	p.R108X	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67667280	67667280	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080416	exon8	c.G816T	p.E272D	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67672185	67672185	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080416	exon5	c.T446C	p.I149T	.	.	.
C8orf45	157777	broad.mit.edu	36	8	67953436	67953436	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173518	exon6	c.T555G	p.N185K	.	.	.
C8orf45	157777	broad.mit.edu	36	8	67958739	67958739	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173518	exon9	c.C1029T	p.C343C	.	.	.
C8orf45	157777	broad.mit.edu	36	8	67976080	67976080	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173518	exon13	c.G1712A	p.R571K	.	.	.
LRRC67	286187	broad.mit.edu	36	8	68092436	68092436	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013626	exon2	c.A101T	p.N34I	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68233330	68233330	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024790	exon18	c.G2321T	p.R774L	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68279534	68279534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006421	exon35	c.G4894A	p.D1632N	.	.	.
ARFGEF1	10565	broad.mit.edu	36	8	68342219	68342219	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006421	exon11	c.G1585T	p.E529X	.	.	.
PREX2	80243	broad.mit.edu	36	8	69165444	69165444	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024870	exon20	c.G2190A	p.E730E	.	.	.
PREX2	80243	broad.mit.edu	36	8	69267252	69267252	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024870	exon37	c.C4542A	p.S1514S	.	.	.
C8orf34	116328	broad.mit.edu	36	8	69514408	69514408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052958	exon2	c.G448A	p.A150T	.	.	.
C8orf34	116328	broad.mit.edu	36	8	69783867	69783867	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052958	exon9	c.C1326T	p.F442F	.	.	.
C8orf34	116328	broad.mit.edu	36	8	69796164	69796164	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052958	exon10	c.A1342G	p.T448A	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70830239	70830239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146008	exon3	c.C1232T	p.S411L	.	.	.
SLCO5A1	81796	broad.mit.edu	36	8	70906911	70906911	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146008	exon1	c.C552T	p.F184F	.	.	.
XKR9	389668	broad.mit.edu	36	8	71808934	71808934	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011720	exon5	c.G843T	p.Q281H	.	.	.
EYA1	2138	broad.mit.edu	36	8	72319440	72319440	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172060	exon10	c.A993G	p.E331E	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73108495	73108495	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon23	c.C2806A	p.L936M	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73121394	73121394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007332	exon17	c.G1969A	p.E657K	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73121975	73121975	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon16	c.T1927G	p.L643V	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73130611	73130611	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon11	c.G1228A	p.D410N	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73137591	73137591	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon6	c.G804T	p.V268V	.	.	.
TRPA1	8989	broad.mit.edu	36	8	73146606	73146606	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007332	exon2	c.G162A	p.K54K	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74011342	74011342	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004770	exon3	c.C1198A	p.L400M	.	.	.
TMEM70	54968	broad.mit.edu	36	8	75056409	75056409	+	Nonstop_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017866	exon3	c.G782T	p.X261L	.	.	.
PI15	51050	broad.mit.edu	36	8	75900085	75900085	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015886	exon2	c.C46A	p.L16I	.	.	.
PI15	51050	broad.mit.edu	36	8	75900167	75900167	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015886	exon2	c.C128T	p.A43V	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77780204	77780204	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.G1326T	p.E442D	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77781139	77781139	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon2	c.G2261A	p.G754E	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77927532	77927532	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.C5820T	p.G1940G	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77928619	77928619	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024721	exon10	c.C6907T	p.R2303W	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77930312	77930312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.C8600A	p.S2867Y	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77938171	77938171	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon11	c.C9666A	p.I3222I	.	.	.
HEY1	23462	broad.mit.edu	36	8	80840335	80840335	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012258	exon5	c.T558C	p.H186H	.	.	.
MRPS28	28957	broad.mit.edu	36	8	81077951	81077951	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014018	exon2	c.A233G	p.E78G	.	.	.
TPD52	7163	broad.mit.edu	36	8	81118993	81118993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025253	exon6	c.G419A	p.R140H	.	.	.
PAG1	55824	broad.mit.edu	36	8	82051694	82051694	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018440	exon9	c.C939T	p.I313I	.	.	.
SLC10A5	347051	broad.mit.edu	36	8	82768860	82768860	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010893	exon1	c.C903T	p.F301F	.	.	.
SLC10A5	347051	broad.mit.edu	36	8	82769035	82769035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010893	exon1	c.C728T	p.T243I	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86240981	86240981	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033402	exon18	c.T2953G	p.C985G	.	.	.
WWP1	11059	broad.mit.edu	36	8	87519951	87519951	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007013	exon17	c.G1771T	p.D591Y	.	.	.
FAM82B	51115	broad.mit.edu	36	8	87556266	87556266	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016033	exon9	c.C793A	p.L265I	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87657363	87657363	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019098	exon18	c.G2215T	p.D739Y	.	.	.
MFHAS1	9258	broad.mit.edu	36	8	8786069	8786069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004225	exon1	c.G1910A	p.R637H	.	.	.
CNBD1	168975	broad.mit.edu	36	8	88368004	88368004	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173538	exon8	c.C1031A	p.P344H	.	.	.
DCAF4L2	138009	broad.mit.edu	36	8	88955199	88955199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152418	exon1	c.C117T	p.F39F	.	.	.
MMP16	4325	broad.mit.edu	36	8	89200056	89200056	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005941	exon5	c.A860C	p.Q287P	.	.	.
RIPK2	8767	broad.mit.edu	36	8	90844238	90844238	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003821	exon2	c.C218A	p.A73D	.	.	.
OSGIN2	734	broad.mit.edu	36	8	91002571	91002571	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004337	exon5	c.A486C	p.R162R	.	.	.
OTUD6B	51633	broad.mit.edu	36	8	92165490	92165490	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016023	exon6	c.G859T	p.E287X	.	.	.
SLC26A7	115111	broad.mit.edu	36	8	92377044	92377044	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134266	exon4	c.C414T	p.S138S	.	.	.
SLC26A7	115111	broad.mit.edu	36	8	92470746	92470746	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134266	exon16	c.A1680C	p.E560D	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93052246	93052246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198626	exon12	c.C1355T	p.A452V	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93067645	93067645	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198626	exon10	c.G1162T	p.E388X	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94815146	94815146	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203390	exon3	c.G2669A	p.R890H	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94816025	94816025	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203390	exon3	c.G1790A	p.R597H	.	.	.
RBM12B	389677	broad.mit.edu	36	8	94816601	94816601	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203390	exon3	c.G1214T	p.R405I	.	.	.
CDH17	1015	broad.mit.edu	36	8	95227571	95227571	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144663	exon15	c.G1928T	p.G643V	.	.	.
GEM	2669	broad.mit.edu	36	8	95341799	95341799	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181702	exon2	c.C109A	p.P37T	.	.	.
RAD54B	25788	broad.mit.edu	36	8	95461710	95461710	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012415	exon12	c.A2086C	p.I696L	.	.	.
KIAA1429	25962	broad.mit.edu	36	8	95634831	95634831	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183009	exon1	c.G21T	p.M7I	.	.	.
INTS8	55656	broad.mit.edu	36	8	95922970	95922970	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017864	exon9	c.G1093T	p.E365X	.	.	.
CCNE2	9134	broad.mit.edu	36	8	95974256	95974256	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057749	exon5	c.C283A	p.L95I	.	.	.
MTERFD1	51001	broad.mit.edu	36	8	97320974	97320974	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015942	exon8	c.C1175A	p.S392Y	.	.	.
MTERFD1	51001	broad.mit.edu	36	8	97338414	97338414	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015942	exon3	c.C439T	p.R147X	.	.	.
MTERFD1	51001	broad.mit.edu	36	8	97339781	97339781	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015942	exon2	c.A314G	p.D105G	.	.	.
SDC2	6383	broad.mit.edu	36	8	97689804	97689804	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002998	exon4	c.C372T	p.A124A	.	.	.
MTDH	92140	broad.mit.edu	36	8	98772438	98772438	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178812	exon6	c.T894C	p.S298S	.	.	.
MTDH	92140	broad.mit.edu	36	8	98781179	98781179	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178812	exon7	c.C1070A	p.S357Y	.	.	.
HRSP12	10247	broad.mit.edu	36	8	99184301	99184301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005836	exon6	c.G359A	p.R120Q	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100218163	100218163	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GRHL2	79977	broad.mit.edu	36	8	102624644	102624644	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UBR5	51366	broad.mit.edu	36	8	103376378	103376378	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PRSS55	203074	broad.mit.edu	36	8	10433721	10433721	+	3'UTR	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RIMS2	9699	broad.mit.edu	36	8	104734095	104734095	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110536119	110536119	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EBAG9	9166	broad.mit.edu	36	8	110638333	110638333	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FER1L6	654463	broad.mit.edu	36	8	125084775	125084775	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GSDMC	56169	broad.mit.edu	36	8	130832969	130832969	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ADCY8	114	broad.mit.edu	36	8	131866914	131866914	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139392350	139392350	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZNF623	9831	broad.mit.edu	36	8	144803185	144803185	+	5'UTR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TUSC3	7991	broad.mit.edu	36	8	15650447	15650447	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
EFHA2	286097	broad.mit.edu	36	8	16983630	16983630	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2058929	2058929	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
DPYSL2	1808	broad.mit.edu	36	8	26557533	26557533	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2796033	2796033	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27980945	27980945	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36865528	36865528	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ADAM2	2515	broad.mit.edu	36	8	39732394	39732394	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
POLB	5423	broad.mit.edu	36	8	42346517	42346517	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
HOOK3	84376	broad.mit.edu	36	8	42948502	42948502	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HGSNAT	138050	broad.mit.edu	36	8	43165896	43165896	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ST18	9705	broad.mit.edu	36	8	53191540	53191540	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RPS20	6224	broad.mit.edu	36	8	57148954	57148954	+	RNA	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CA8	767	broad.mit.edu	36	8	61302056	61302056	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RAB2A	5862	broad.mit.edu	36	8	61633924	61633924	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CLVS1	157807	broad.mit.edu	36	8	62451904	62451904	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CYP7B1	9420	broad.mit.edu	36	8	65671741	65671741	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CSPP1	79848	broad.mit.edu	36	8	68149031	68149031	+	Splice_Site	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PREX2	80243	broad.mit.edu	36	8	69113086	69113086	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CRISPLD1	83690	broad.mit.edu	36	8	76104172	76104172	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CNBD1	168975	broad.mit.edu	36	8	87986546	87986546	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MMP16	4325	broad.mit.edu	36	8	89150710	89150710	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RUNX1T1	862	broad.mit.edu	36	8	93068286	93068286	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PTDSS1	9791	broad.mit.edu	36	8	97381092	97381092	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
POP1	10940	broad.mit.edu	36	8	99216069	99216069	+	Intron	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
INSL6	11172	broad.mit.edu	36	9	5153941	5153942	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007179	exon2	c.614_615insA	p.R205fs	.	.	.
ANKS6	203286	broad.mit.edu	36	9	100592254	100592254	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173551	exon2	c.A815G	p.D272G	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100789398	100789398	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001855	exon4	c.G650A	p.G217D	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100838432	100838432	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001855	exon21	c.A2342G	p.D781G	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100840802	100840802	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001855	exon22	c.A2441C	p.N814T	.	.	.
TGFBR1	7046	broad.mit.edu	36	9	100939992	100939992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130916	exon3	c.C374T	p.A125V	.	.	.
TGFBR1	7046	broad.mit.edu	36	9	100940109	100940109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130916	exon3	c.C491T	p.S164L	.	.	.
ALG2	85365	broad.mit.edu	36	9	101020383	101020383	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033087	exon2	c.C905A	p.S302Y	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102311197	102311197	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003692	exon3	c.G396T	p.Q132H	.	.	.
MURC	347273	broad.mit.edu	36	9	102380331	102380331	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018116	exon1	c.G85A	p.A29T	.	.	.
ALDOB	229	broad.mit.edu	36	9	103231960	103231960	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000035	exon3	c.C222T	p.I74I	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103375541	103375541	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133445	exon9	c.C3084A	p.I1028I	.	.	.
CYLC2	1539	broad.mit.edu	36	9	104807432	104807432	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001340	exon5	c.A698C	p.E233A	.	.	.
OR13C4	138804	broad.mit.edu	36	9	106329154	106329154	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001919	exon1	c.C158A	p.S53Y	.	.	.
OR13C2	392376	broad.mit.edu	36	9	106406977	106406977	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004481	exon1	c.C753A	p.F251L	.	.	.
SLC44A1	23446	broad.mit.edu	36	9	107150518	107150518	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080546	exon5	c.T465G	p.S155S	.	.	.
FKTN	2218	broad.mit.edu	36	9	107437155	107437155	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006731	exon10	c.A1175G	p.Y392C	.	.	.
TAL2	6887	broad.mit.edu	36	9	107464888	107464888	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005421	exon1	c.A290T	p.Q97L	.	.	.
ZNF462	58499	broad.mit.edu	36	9	108730591	108730591	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021224	exon3	c.G4577A	p.R1526H	.	.	.
RAD23B	5887	broad.mit.edu	36	9	109120857	109120857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002874	exon6	c.C557T	p.T186M	.	.	.
ACTL7B	10880	broad.mit.edu	36	9	110656971	110656971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006686	exon1	c.G1061A	p.R354H	.	.	.
ACTL7B	10880	broad.mit.edu	36	9	110657496	110657496	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006686	exon1	c.C536T	p.T179M	.	.	.
ACTL7B	10880	broad.mit.edu	36	9	110657675	110657675	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006686	exon1	c.C357T	p.I119I	.	.	.
ACTL7A	10881	broad.mit.edu	36	9	110665029	110665029	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006687	exon1	c.G606A	p.S202S	.	.	.
IKBKAP	8518	broad.mit.edu	36	9	110699371	110699371	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003640	exon23	c.G2379A	p.T793T	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110754328	110754328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003798	exon14	c.C1817T	p.S606F	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110801237	110801237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003798	exon2	c.G262A	p.A88T	.	.	.
PTPN3	5774	broad.mit.edu	36	9	111212110	111212110	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145372	exon5	c.T572G	p.F191C	.	.	.
PTPN3	5774	broad.mit.edu	36	9	111224865	111224865	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002829	exon13	c.G1090T	p.E364X	.	.	.
PTPN3	5774	broad.mit.edu	36	9	111265520	111265520	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002829	exon2	c.C16T	p.R6C	.	.	.
PALM2-AKAP2	445815	broad.mit.edu	36	9	111727175	111727175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053016	exon5	c.C386T	p.T129M	.	.	.
PALM2-AKAP2	445815	broad.mit.edu	36	9	111939349	111939349	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004065	exon2	c.G1278A	p.R426R	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112245791	112245791	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon27	c.G4494T	p.K1498N	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112260647	112260647	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon20	c.C3501A	p.F1167L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112261192	112261192	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon19	c.C3345A	p.F1115L	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112268025	112268025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon18	c.C3263T	p.S1088L	.	.	.
LPAR1	1902	broad.mit.edu	36	9	112743699	112743699	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001401	exon3	c.T616C	p.Y206H	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113180827	113180827	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon37	c.A4342G	p.N1448D	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113188539	113188539	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon33	c.G4000T	p.E1334X	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113344082	113344082	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133464	exon6	c.G1046A	p.R349H	.	.	.
ZNF483	158399	broad.mit.edu	36	9	113345248	113345248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133464	exon6	c.C2212T	p.R738W	.	.	.
PTGR1	22949	broad.mit.edu	36	9	113376902	113376902	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146109	exon8	c.G693T	p.K231N	.	.	.
PTGR1	22949	broad.mit.edu	36	9	113396348	113396348	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146109	exon3	c.T127C	p.F43L	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113494000	113494000	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173521	exon25	c.T3886G	p.F1296V	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113558550	113558550	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173521	exon6	c.C546A	p.F182L	.	.	.
ROD1	9991	broad.mit.edu	36	9	114070254	114070254	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163790	exon5	c.G340A	p.V114M	.	.	.
HSDL2	84263	broad.mit.edu	36	9	114272547	114272547	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195822	exon9	c.A940G	p.T314A	.	.	.
SLC46A2	57864	broad.mit.edu	36	9	114692561	114692561	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033051	exon1	c.C222A	p.I74I	.	.	.
POLE3	54107	broad.mit.edu	36	9	115211801	115211801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017443	exon4	c.C181T	p.R61W	.	.	.
C9orf43	257169	broad.mit.edu	36	9	115226336	115226336	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152786	exon8	c.G726T	p.K242N	.	.	.
C9orf43	257169	broad.mit.edu	36	9	115227494	115227494	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152786	exon10	c.G915T	p.K305N	.	.	.
ZNF618	114991	broad.mit.edu	36	9	115851142	115851142	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133374	exon14	c.T1460C	p.V487A	.	.	.
COL27A1	85301	broad.mit.edu	36	9	115970449	115970449	+	Missense_Mutation	SNP	G	A	A	rs34578955	byCluster;byFrequency	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032888	exon3	c.G793A	p.A265T	.	.	.
COL27A1	85301	broad.mit.edu	36	9	116011828	116011828	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032888	exon11	c.G2321A	p.R774Q	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116226439	116226439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015404	exon6	c.C1412T	p.A471V	.	.	.
C9orf91	203197	broad.mit.edu	36	9	116440764	116440764	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153045	exon8	c.T786C	p.C262C	.	.	.
TNFSF15	9966	broad.mit.edu	36	9	116592622	116592622	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005118	exon4	c.C687T	p.N229N	.	.	.
TNC	3371	broad.mit.edu	36	9	116848577	116848577	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon17	c.C5058T	p.Y1686Y	.	.	.
TNC	3371	broad.mit.edu	36	9	116888681	116888681	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon3	c.C1150T	p.R384C	.	.	.
PAPPA	5069	broad.mit.edu	36	9	117989597	117989597	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002581	exon2	c.C759T	p.I253I	.	.	.
PAPPA	5069	broad.mit.edu	36	9	117989667	117989667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002581	exon2	c.G829A	p.A277T	.	.	.
PAPPA	5069	broad.mit.edu	36	9	118009676	118009676	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002581	exon3	c.G1599T	p.W533C	.	.	.
ASTN2	23245	broad.mit.edu	36	9	118527984	118527984	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014010	exon15	c.A2540T	p.Q847L	.	.	.
TLR4	7099	broad.mit.edu	36	9	119514733	119514733	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138554	exon3	c.A506C	p.E169A	.	.	.
TLR4	7099	broad.mit.edu	36	9	119515011	119515011	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138554	exon3	c.G784T	p.E262X	.	.	.
TLR4	7099	broad.mit.edu	36	9	119515496	119515496	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138554	exon3	c.A1269C	p.Q423H	.	.	.
TLR4	7099	broad.mit.edu	36	9	119516226	119516226	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138554	exon3	c.T1999C	p.Y667H	.	.	.
DBC1	1620	broad.mit.edu	36	9	120969371	120969371	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014618	exon8	c.C2098T	p.R700W	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122239623	122239623	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018249	exon25	c.C3726T	p.Y1242Y	.	.	.
CDK5RAP2	55755	broad.mit.edu	36	9	122241789	122241789	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018249	exon24	c.T3431A	p.I1144N	.	.	.
FBXW2	26190	broad.mit.edu	36	9	122578272	122578272	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012164	exon5	c.G739T	p.D247Y	.	.	.
FBXW2	26190	broad.mit.edu	36	9	122590350	122590350	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012164	exon3	c.G8T	p.R3I	.	.	.
PSMD5	5711	broad.mit.edu	36	9	122628883	122628883	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005047	exon6	c.C795T	p.F265F	.	.	.
C5	727	broad.mit.edu	36	9	122798371	122798371	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001735	exon22	c.C2819A	p.S940Y	.	.	.
CEP110	11064	broad.mit.edu	36	9	122890467	122890467	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007018	exon1	c.G42T	p.K14N	.	.	.
CEP110	11064	broad.mit.edu	36	9	122943547	122943547	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007018	exon16	c.C2551A	p.L851I	.	.	.
TTLL11	158135	broad.mit.edu	36	9	123791370	123791370	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139442	exon4	c.C1464T	p.I488I	.	.	.
MORN5	254956	broad.mit.edu	36	9	123971831	123971831	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198469	exon3	c.G282T	p.E94D	.	.	.
PTGS1	5742	broad.mit.edu	36	9	124180968	124180968	+	Missense_Mutation	SNP	G	A	A	rs10306140	byFrequency;byHapMap	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000962	exon5	c.G446A	p.R149H	.	.	.
OR1J1	347168	broad.mit.edu	36	9	124279099	124279099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004451	exon1	c.G928A	p.A310T	.	.	.
OR1N1	138883	broad.mit.edu	36	9	124329091	124329091	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012363	exon1	c.C303A	p.F101L	.	.	.
OR1N2	138882	broad.mit.edu	36	9	124355275	124355275	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004457	exon1	c.A6C	p.E2D	.	.	.
OR1N2	138882	broad.mit.edu	36	9	124355929	124355929	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004457	exon1	c.C660A	p.G220G	.	.	.
OR1L8	138881	broad.mit.edu	36	9	124369998	124369998	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004454	exon1	c.T580C	p.F194L	.	.	.
OR1L3	26735	broad.mit.edu	36	9	124478112	124478112	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005234	exon1	c.G883T	p.D295Y	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124602261	124602261	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080859	exon1	c.C39T	p.F13F	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124891939	124891939	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012197	exon20	c.G2506A	p.E836K	.	.	.
RABGAP1	23637	broad.mit.edu	36	9	124900876	124900876	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012197	exon23	c.C2795A	p.S932Y	.	.	.
PPP6C	5537	broad.mit.edu	36	9	126955750	126955750	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001123369	exon5	c.A486C	p.E162D	.	.	.
GAPVD1	26130	broad.mit.edu	36	9	127139509	127139509	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015635	exon16	c.C2776T	p.R926X	.	.	.
PBX3	5090	broad.mit.edu	36	9	127550686	127550686	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006195	exon2	c.G237A	p.A79A	.	.	.
PBX3	5090	broad.mit.edu	36	9	127768007	127768007	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006195	exon9	c.C1289T	p.S430L	.	.	.
ANGPTL2	23452	broad.mit.edu	36	9	128893788	128893788	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012098	exon4	c.G1264T	p.D422Y	.	.	.
GARNL3	84253	broad.mit.edu	36	9	129146357	129146357	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032293	exon15	c.T1274G	p.F425C	.	.	.
FAM129B	64855	broad.mit.edu	36	9	129329346	129329346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022833	exon3	c.G263A	p.R88H	.	.	.
SH2D3C	10044	broad.mit.edu	36	9	129553362	129553362	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142534	exon2	c.G114T	p.E38D	.	.	.
ENG	2022	broad.mit.edu	36	9	129627039	129627039	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114753	exon7	c.G852T	p.E284D	.	.	.
ST6GALNAC6	30815	broad.mit.edu	36	9	129696731	129696731	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013443	exon4	c.A178G	p.S60G	.	.	.
SLC25A25	114789	broad.mit.edu	36	9	129900801	129900801	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052901	exon1	c.C135A	p.F45L	.	.	.
DNM1	1759	broad.mit.edu	36	9	130020713	130020713	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon3	c.G267T	p.K89N	.	.	.
DNM1	1759	broad.mit.edu	36	9	130050032	130050032	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon17	c.G1901T	p.R634I	.	.	.
CERCAM	51148	broad.mit.edu	36	9	130230517	130230517	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016174	exon6	c.A882G	p.A294A	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130386589	130386589	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon17	c.C2401T	p.R801X	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130434565	130434565	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon52	c.G6919T	p.E2307X	.	.	.
C9orf114	51490	broad.mit.edu	36	9	130631239	130631239	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016390	exon2	c.G53T	p.R18M	.	.	.
CCBL1	883	broad.mit.edu	36	9	130644786	130644786	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122672	exon3	c.G169T	p.D57Y	.	.	.
NUP188	23511	broad.mit.edu	36	9	130795695	130795695	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015354	exon27	c.G2918A	p.R973Q	.	.	.
TOR1A	1861	broad.mit.edu	36	9	131616208	131616208	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000113	exon5	c.G863A	p.R288Q	.	.	.
MPDZ	8777	broad.mit.edu	36	9	13166160	13166160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003829	exon19	c.C2906T	p.S969F	.	.	.
NCS1	23413	broad.mit.edu	36	9	132021859	132021859	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128826	exon4	c.C209T	p.A70V	.	.	.
FUBP3	8939	broad.mit.edu	36	9	132488831	132488831	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003934	exon11	c.G887T	p.S296I	.	.	.
LAMC3	10319	broad.mit.edu	36	9	132891551	132891551	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006059	exon2	c.C432T	p.S144S	.	.	.
NUP214	8021	broad.mit.edu	36	9	133039324	133039324	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005085	exon22	c.C2955T	p.S985S	.	.	.
NUP214	8021	broad.mit.edu	36	9	133054282	133054282	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005085	exon26	c.A3517G	p.K1173E	.	.	.
POMT1	10585	broad.mit.edu	36	9	133386594	133386594	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007171	exon18	c.C1805T	p.S602L	.	.	.
SETX	23064	broad.mit.edu	36	9	134129842	134129842	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon26	c.A7639G	p.I2547V	.	.	.
SETX	23064	broad.mit.edu	36	9	134163452	134163452	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon13	c.G5617T	p.E1873X	.	.	.
SETX	23064	broad.mit.edu	36	9	134193217	134193217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon10	c.G3589A	p.D1197N	.	.	.
SETX	23064	broad.mit.edu	36	9	134194243	134194243	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon10	c.G2563T	p.E855X	.	.	.
C9orf171	389799	broad.mit.edu	36	9	134402907	134402907	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207417	exon5	c.A731T	p.K244M	.	.	.
C9orf9	11092	broad.mit.edu	36	9	134749180	134749180	+	Missense_Mutation	SNP	C	T	T	rs34208349	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018956	exon2	c.C25T	p.R9C	.	.	.
SURF6	6838	broad.mit.edu	36	9	135188971	135188971	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006753	exon5	c.C641T	p.A214V	.	.	.
C9orf96	169436	broad.mit.edu	36	9	135259846	135259846	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153710	exon17	c.C1845A	p.G615G	.	.	.
TMEM8C	389827	broad.mit.edu	36	9	135375221	135375221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080483	exon2	c.C146T	p.A49V	.	.	.
DBH	1621	broad.mit.edu	36	9	135499216	135499216	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000787	exon5	c.G977T	p.R326I	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136857565	136857565	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon63	c.C5061T	p.S1687S	.	.	.
FCN1	2219	broad.mit.edu	36	9	136941700	136941700	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002003	exon9	c.C746T	p.T249M	.	.	.
OLFM1	10439	broad.mit.edu	36	9	137151771	137151771	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014279	exon6	c.T1330C	p.Y444H	.	.	.
GLT6D1	360203	broad.mit.edu	36	9	137657750	137657750	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182974	exon4	c.C243A	p.V81V	.	.	.
CAMSAP1	157922	broad.mit.edu	36	9	137843150	137843150	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015447	exon17	c.G4635T	p.K1545N	.	.	.
SNAPC4	6621	broad.mit.edu	36	9	138401778	138401778	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003086	exon12	c.C1305T	p.S435S	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138488914	138488914	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon3	c.G2975A	p.G992E	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138489050	138489050	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon3	c.G2839A	p.A947T	.	.	.
PNPLA7	375775	broad.mit.edu	36	9	139494696	139494696	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098537	exon23	c.C2469A	p.I823I	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140116988	140116988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000718	exon37	c.C5227T	p.R1743C	.	.	.
FREM1	158326	broad.mit.edu	36	9	14766171	14766171	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon26	c.G4473A	p.E1491E	.	.	.
FREM1	158326	broad.mit.edu	36	9	14831511	14831511	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon11	c.C1815A	p.I605I	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15561671	15561671	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173550	exon3	c.G91T	p.E31X	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15836717	15836717	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173550	exon22	c.G3285T	p.K1095N	.	.	.
BNC2	54796	broad.mit.edu	36	9	16409048	16409048	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017637	exon7	c.G3239A	p.R1080Q	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17226537	17226537	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017738	exon5	c.A800G	p.Q267R	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17356696	17356696	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017738	exon13	c.T1968C	p.C656C	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18743445	18743445	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040272	exon16	c.C2156T	p.T719M	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18785428	18785428	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040272	exon20	c.C3711A	p.I1237I	.	.	.
SLC24A2	25769	broad.mit.edu	36	9	19776464	19776464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020344	exon2	c.C401T	p.A134V	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2022958	2022958	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003070	exon3	c.G232A	p.D78N	.	.	.
SMARCA2	6595	broad.mit.edu	36	9	2113819	2113819	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003070	exon27	c.A3863G	p.D1288G	.	.	.
IFNA4	3441	broad.mit.edu	36	9	21177469	21177469	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021068	exon1	c.C62A	p.S21Y	.	.	.
IFNA7	3444	broad.mit.edu	36	9	21191841	21191841	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021057	exon1	c.T324G	p.F108L	.	.	.
IFNA16	3449	broad.mit.edu	36	9	21207155	21207155	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002173	exon1	c.C150A	p.F50L	.	.	.
KLHL9	55958	broad.mit.edu	36	9	21323218	21323218	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018847	exon1	c.C1641T	p.I547I	.	.	.
KLHL9	55958	broad.mit.edu	36	9	21324512	21324512	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018847	exon1	c.C347A	p.S116Y	.	.	.
IFNA6	3443	broad.mit.edu	36	9	21340605	21340605	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021002	exon1	c.G282T	p.K94N	.	.	.
IFNA6	3443	broad.mit.edu	36	9	21340750	21340750	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021002	exon1	c.G137T	p.R46I	.	.	.
CDKN2A	1029	broad.mit.edu	36	9	21964608	21964608	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058197	exon1	c.A219C	p.E73D	.	.	.
DMRTA1	63951	broad.mit.edu	36	9	22441144	22441144	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022160	exon2	c.C749A	p.S250X	.	.	.
TEK	7010	broad.mit.edu	36	9	27099607	27099607	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000459	exon1	c.T19G	p.L7V	.	.	.
MOBKL2B	79817	broad.mit.edu	36	9	27349143	27349143	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024761	exon3	c.C510T	p.F170F	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27939138	27939138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152570	exon7	c.C1532T	p.A511V	.	.	.
KIAA0020	9933	broad.mit.edu	36	9	2819936	2819936	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014878	exon8	c.G690A	p.Q230Q	.	.	.
ACO1	48	broad.mit.edu	36	9	32395519	32395519	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002197	exon2	c.C15T	p.F5F	.	.	.
DDX58	23586	broad.mit.edu	36	9	32471340	32471340	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014314	exon11	c.C1636T	p.R546W	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32532375	32532375	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.C1953T	p.Y651Y	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32620502	32620502	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.C5076A	p.V1692V	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32623489	32623489	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.C2089A	p.L697I	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32624481	32624481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.G1097A	p.R366Q	.	.	.
DNAJA1	3301	broad.mit.edu	36	9	33020555	33020555	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001539	exon5	c.T533C	p.M178T	.	.	.
B4GALT1	2683	broad.mit.edu	36	9	33103458	33103458	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001497	exon6	c.G1191A	p.P397P	.	.	.
B4GALT1	2683	broad.mit.edu	36	9	33103815	33103815	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001497	exon5	c.A1021G	p.I341V	.	.	.
B4GALT1	2683	broad.mit.edu	36	9	33110551	33110551	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001497	exon3	c.A702C	p.E234D	.	.	.
DNAI1	27019	broad.mit.edu	36	9	34479430	34479430	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012144	exon5	c.G371A	p.R124H	.	.	.
DNAI1	27019	broad.mit.edu	36	9	34490801	34490801	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012144	exon11	c.A983G	p.D328G	.	.	.
DNAI1	27019	broad.mit.edu	36	9	34503116	34503116	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012144	exon16	c.G1496A	p.G499D	.	.	.
C9orf131	138724	broad.mit.edu	36	9	35034145	35034145	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040411	exon2	c.C1300T	p.L434F	.	.	.
PIGO	84720	broad.mit.edu	36	9	35082699	35082699	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032634	exon7	c.G1185A	p.Q395Q	.	.	.
RUSC2	9853	broad.mit.edu	36	9	35537735	35537735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014806	exon2	c.C1217T	p.S406F	.	.	.
TPM2	7169	broad.mit.edu	36	9	35674535	35674535	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213674	exon7	c.G652T	p.E218X	.	.	.
TPM2	7169	broad.mit.edu	36	9	35675749	35675749	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213674	exon3	c.G269A	p.R90H	.	.	.
TPM2	7169	broad.mit.edu	36	9	35679809	35679809	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213674	exon1	c.C6T	p.D2D	.	.	.
NPR2	4882	broad.mit.edu	36	9	35783956	35783956	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon2	c.G729T	p.E243D	.	.	.
NPR2	4882	broad.mit.edu	36	9	35791725	35791725	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon8	c.C1522A	p.H508N	.	.	.
SPAG8	26206	broad.mit.edu	36	9	35800915	35800915	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039592	exon3	c.A1004G	p.Y335C	.	.	.
OR2S2	56656	broad.mit.edu	36	9	35947817	35947817	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019897	exon1	c.C279A	p.I93I	.	.	.
RECK	8434	broad.mit.edu	36	9	36108832	36108832	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021111	exon18	c.C2332T	p.R778C	.	.	.
RECK	8434	broad.mit.edu	36	9	36111661	36111661	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021111	exon20	c.C2670T	p.V890V	.	.	.
RNF38	152006	broad.mit.edu	36	9	36347936	36347936	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194329	exon4	c.C424A	p.H142N	.	.	.
DOCK8	81704	broad.mit.edu	36	9	367067	367067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190458	exon19	c.G2092A	p.E698K	.	.	.
ZCCHC7	84186	broad.mit.edu	36	9	37116459	37116459	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032226	exon2	c.G130T	p.D44Y	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37506074	37506074	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012166	exon10	c.G2523T	p.K841N	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37736408	37736408	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014907	exon16	c.G4379T	p.S1460I	.	.	.
FRMPD1	22844	broad.mit.edu	36	9	37736645	37736645	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014907	exon16	c.A4616C	p.K1539T	.	.	.
RG9MTD3	158234	broad.mit.edu	36	9	37753707	37753707	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144964	exon4	c.G377T	p.R126I	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38385884	38385884	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000692	exon2	c.G139A	p.D47N	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38386461	38386461	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000692	exon2	c.C716T	p.T239M	.	.	.
ALDH1B1	219	broad.mit.edu	36	9	38386875	38386875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000692	exon2	c.G1130A	p.G377D	.	.	.
CNTNAP3	79937	broad.mit.edu	36	9	39099178	39099178	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033655	exon15	c.C2344T	p.P782S	.	.	.
CNTNAP3	79937	broad.mit.edu	36	9	39130580	39130580	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033655	exon12	c.T1812G	p.L604L	.	.	.
FAM75A3	727830	broad.mit.edu	36	9	40694210	40694210	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083124	exon4	c.C1867T	p.L623L	.	.	.
ZNF658	26149	broad.mit.edu	36	9	40764705	40764705	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033160	exon5	c.A570G	p.E190E	.	.	.
GLIS3	169792	broad.mit.edu	36	9	4107826	4107826	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152629	exon3	c.G1187A	p.R396H	.	.	.
DOCK8	81704	broad.mit.edu	36	9	418479	418479	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190458	exon33	c.C4156T	p.R1386C	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4554401	4554401	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004170	exon4	c.C383T	p.A128V	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4566583	4566583	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004170	exon10	c.C1013A	p.P338H	.	.	.
PPAPDC2	403313	broad.mit.edu	36	9	4652968	4652968	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203453	exon1	c.A593G	p.D198G	.	.	.
RCL1	10171	broad.mit.edu	36	9	4839456	4839456	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005772	exon8	c.G877A	p.V293I	.	.	.
JAK2	3717	broad.mit.edu	36	9	5054982	5054982	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004972	exon9	c.G1156T	p.E386X	.	.	.
JAK2	3717	broad.mit.edu	36	9	5079770	5079770	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004972	exon20	c.G2668T	p.E890X	.	.	.
INSL6	11172	broad.mit.edu	36	9	5154170	5154170	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007179	exon2	c.A385C	p.R129R	.	.	.
RLN2	6019	broad.mit.edu	36	9	5290394	5290394	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134441	exon2	c.T262C	p.S88P	.	.	.
ERMP1	79956	broad.mit.edu	36	9	5815132	5815132	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024896	exon3	c.T728C	p.V243A	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5911788	5911788	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon8	c.C4208A	p.S1403Y	.	.	.
IL33	90865	broad.mit.edu	36	9	6240494	6240494	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199640	exon3	c.G112T	p.E38X	.	.	.
TPD52L3	89882	broad.mit.edu	36	9	6318677	6318677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001875	exon1	c.G82A	p.E28K	.	.	.
GLDC	2731	broad.mit.edu	36	9	6577248	6577248	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000170	exon15	c.C1743A	p.P581P	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	67558287	67558287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012419	exon15	c.G2026A	p.D676N	.	.	.
ANKRD20A4	728747	broad.mit.edu	36	9	68713407	68713407	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098805	exon15	c.G1883T	p.R628I	.	.	.
KANK1	23189	broad.mit.edu	36	9	702443	702443	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015158	exon3	c.C1677T	p.V559V	.	.	.
APBA1	320	broad.mit.edu	36	9	71260995	71260995	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163	exon8	c.C1776T	p.F592F	.	.	.
PTAR1	375743	broad.mit.edu	36	9	71538962	71538962	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099666	exon4	c.A352C	p.N118H	.	.	.
C9orf135	138255	broad.mit.edu	36	9	71691589	71691589	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010940	exon5	c.G465A	p.T155T	.	.	.
SMC5	23137	broad.mit.edu	36	9	72069114	72069114	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015110	exon2	c.C260T	p.S87L	.	.	.
SMC5	23137	broad.mit.edu	36	9	72154892	72154892	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015110	exon23	c.C2932T	p.R978X	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72342033	72342033	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007471	exon25	c.C3780T	p.I1260I	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72424948	72424948	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007471	exon15	c.C1957A	p.L653M	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73509473	73509473	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013390	exon18	c.A3052G	p.N1018D	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73534983	73534983	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013390	exon9	c.G1780T	p.D594Y	.	.	.
TMEM2	23670	broad.mit.edu	36	9	73550150	73550150	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013390	exon4	c.G638T	p.S213I	.	.	.
ALDH1A1	216	broad.mit.edu	36	9	74716749	74716749	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000689	exon10	c.T1145C	p.V382A	.	.	.
RORB	6096	broad.mit.edu	36	9	76470254	76470254	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006914	exon7	c.G923C	p.C308S	.	.	.
TRPM6	140803	broad.mit.edu	36	9	76646955	76646955	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177310	exon4	c.G262T	p.D88Y	.	.	.
C9orf41	138199	broad.mit.edu	36	9	76803432	76803432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152420	exon5	c.G812A	p.R271Q	.	.	.
PCSK5	5125	broad.mit.edu	36	9	77900765	77900765	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190482	exon8	c.C1034A	p.P345H	.	.	.
GCNT1	2650	broad.mit.edu	36	9	78307984	78307984	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097633	exon3	c.C867T	p.F289F	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78510072	78510072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon8	c.C6938T	p.T2313M	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78510919	78510919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon8	c.C6091T	p.P2031S	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78515447	78515447	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon8	c.C1563A	p.F521L	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79010778	79010778	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon5	c.A348C	p.K116N	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79019068	79019068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon10	c.G700A	p.D234N	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79057014	79057014	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018037	exon22	c.G2214T	p.Q738H	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79100291	79100291	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018037	exon32	c.A3404C	p.N1135T	.	.	.
VPS13A	23230	broad.mit.edu	36	9	79119268	79119268	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001018037	exon36	c.T4163G	p.L1388R	.	.	.
GNAQ	2776	broad.mit.edu	36	9	79602314	79602314	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002072	exon4	c.C547T	p.R183X	.	.	.
GNAQ	2776	broad.mit.edu	36	9	79620425	79620425	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002072	exon3	c.T403G	p.L135V	.	.	.
CEP78	84131	broad.mit.edu	36	9	80069007	80069007	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098802	exon13	c.C1583A	p.S528Y	.	.	.
CEP78	84131	broad.mit.edu	36	9	80071301	80071301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098802	exon16	c.C1972T	p.R658W	.	.	.
TLE4	7091	broad.mit.edu	36	9	81379657	81379657	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007005	exon3	c.C193T	p.R65W	.	.	.
TLE1	7088	broad.mit.edu	36	9	83395776	83395776	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005077	exon16	c.T1593C	p.N531N	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8365974	8365974	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon23	c.T3393C	p.C1131C	.	.	.
FAM75D1	389763	broad.mit.edu	36	9	83796488	83796488	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001670	exon4	c.G1283T	p.W428L	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8497303	8497303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon10	c.G1666A	p.E556K	.	.	.
C9orf103	414328	broad.mit.edu	36	9	85448246	85448246	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001551	exon5	c.G295T	p.D99Y	.	.	.
UBQLN1	29979	broad.mit.edu	36	9	85466575	85466575	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053067	exon10	c.G1633T	p.G545X	.	.	.
UBQLN1	29979	broad.mit.edu	36	9	85487727	85487727	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053067	exon3	c.A407C	p.N136T	.	.	.
KIF27	55582	broad.mit.edu	36	9	85696228	85696228	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017576	exon6	c.A1611C	p.K537N	.	.	.
C9orf64	84267	broad.mit.edu	36	9	85761178	85761178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032307	exon1	c.G58A	p.D20N	.	.	.
RMI1	80010	broad.mit.edu	36	9	85806219	85806219	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024945	exon3	c.A498C	p.K166N	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86529008	86529008	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018064	exon10	c.C770T	p.S257F	.	.	.
ISCA1	81689	broad.mit.edu	36	9	88070904	88070904	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030940	exon4	c.G264T	p.K88N	.	.	.
ZCCHC6	79670	broad.mit.edu	36	9	88130247	88130247	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185074	exon8	c.G1242T	p.V414V	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89445106	89445106	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon8	c.G703A	p.E235K	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89504934	89504935	+	Nonsense_Mutation	DNP	CG	TA	TA	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	CG	CG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004938	exon24	c.2833_2834TA	.	.	.	NA
C9orf79	286234	broad.mit.edu	36	9	89689669	89689669	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.C447T	p.G149G	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89691141	89691141	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.C1919A	p.S640Y	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89693324	89693324	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.C4102T	p.R1368C	.	.	.
LOC286238	286238	broad.mit.edu	36	9	90452226	90452226	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100111	exon2	c.C237T	p.S79S	.	.	.
SECISBP2	79048	broad.mit.edu	36	9	91146171	91146171	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024077	exon10	c.C1392T	p.H464H	.	.	.
DIRAS2	54769	broad.mit.edu	36	9	92415396	92415396	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017594	exon2	c.C534T	p.I178I	.	.	.
ROR2	4920	broad.mit.edu	36	9	93526406	93526406	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004560	exon9	c.G2191A	p.E731K	.	.	.
SPTLC1	10558	broad.mit.edu	36	9	93849282	93849282	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006415	exon11	c.G1074T	p.E358D	.	.	.
SPTLC1	10558	broad.mit.edu	36	9	93852068	93852068	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006415	exon9	c.A883C	p.I295L	.	.	.
NOL8	55035	broad.mit.edu	36	9	94120726	94120726	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017948	exon6	c.C481T	p.R161C	.	.	.
CENPP	401541	broad.mit.edu	36	9	94134318	94134318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012267	exon2	c.G153A	p.K51K	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94649609	94649609	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007101	exon4	c.T1173C	p.F391F	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94649922	94649922	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007101	exon4	c.A860T	p.Y287F	.	.	.
ZNF484	83744	broad.mit.edu	36	9	94650478	94650478	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007101	exon4	c.C304T	p.R102C	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95352687	95352687	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014612	exon12	c.G2167T	p.V723L	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95364321	95364321	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014612	exon17	c.G2959T	p.G987X	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97249085	97249085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon23	c.C3821T	p.S1274L	.	.	.
C9orf102	375748	broad.mit.edu	36	9	97699994	97699994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010895	exon3	c.C547T	p.R183C	.	.	.
HABP4	22927	broad.mit.edu	36	9	98290254	98290254	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014282	exon7	c.A1062C	p.T354T	.	.	.
CDC14B	8555	broad.mit.edu	36	9	98366889	98366889	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003671	exon3	c.G318T	p.K106N	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98620549	98620549	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001662	exon6	c.G1577T	p.R526I	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98620885	98620885	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001662	exon6	c.G1241A	p.R414K	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98621386	98621386	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001662	exon6	c.A740C	p.K247T	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98621777	98621777	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001662	exon6	c.A349C	p.I117L	.	.	.
ZNF322B	387328	broad.mit.edu	36	9	99001226	99001226	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199005	exon1	c.A389G	p.D130G	.	.	.
LOC57653	57653	broad.mit.edu	36	9	99168730	99168730	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020893	exon31	c.C4248T	p.C1416C	.	.	.
TDRD7	23424	broad.mit.edu	36	9	99297811	99297811	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014290	exon17	c.G3122A	p.R1041Q	.	.	.
NCBP1	4686	broad.mit.edu	36	9	99442960	99442960	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002486	exon2	c.C98T	p.S33F	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99928702	99928702	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052820	exon11	c.A1396G	p.T466A	.	.	.
CORO2A	7464	broad.mit.edu	36	9	99959644	99959644	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052820	exon2	c.C120A	p.F40L	.	.	.
ANKS6	203286	broad.mit.edu	36	9	100586928	100586928	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100806993	100806993	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RNF20	56254	broad.mit.edu	36	9	103348920	103348920	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NIPSNAP3B	55335	broad.mit.edu	36	9	106571131	106571131	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C9orf4	23732	broad.mit.edu	36	9	110949299	110949299	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MUSK	4593	broad.mit.edu	36	9	112578068	112578068	+	Intron	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113507476	113507476	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C9orf84	158401	broad.mit.edu	36	9	113550308	113550308	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ROD1	9991	broad.mit.edu	36	9	114036914	114036914	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
C9orf91	203197	broad.mit.edu	36	9	116419407	116419407	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
RC3H2	54542	broad.mit.edu	36	9	124657823	124657823	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
RC3H2	54542	broad.mit.edu	36	9	124682364	124682364	+	RNA	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
STRBP	55342	broad.mit.edu	36	9	124975770	124975770	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
PBX3	5090	broad.mit.edu	36	9	127765203	127765203	+	Splice_Site	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CACNA1B	774	broad.mit.edu	36	9	140087887	140087887	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SNAPC3	6619	broad.mit.edu	36	9	15447949	15447949	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C9orf93	203238	broad.mit.edu	36	9	15864673	15864673	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TMEM215	401498	broad.mit.edu	36	9	32774891	32774891	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CCL21	6366	broad.mit.edu	36	9	34699684	34699684	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CCL21	6366	broad.mit.edu	36	9	34699994	34699994	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC1A1	6505	broad.mit.edu	36	9	4556090	4556090	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FAM189A2	9413	broad.mit.edu	36	9	71182214	71182214	+	Splice_Site	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C9orf41	138199	broad.mit.edu	36	9	76804458	76804458	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	9	81196325	81196325	+	IGR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
TLE4	7091	broad.mit.edu	36	9	81509643	81509643	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TLE4	7091	broad.mit.edu	36	9	81511866	81511866	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	9	83865728	83865728	+	IGR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SLC28A3	64078	broad.mit.edu	36	9	86145301	86145301	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AGTPBP1	23287	broad.mit.edu	36	9	87424044	87424044	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SECISBP2	79048	broad.mit.edu	36	9	91137635	91137635	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
ROR2	4920	broad.mit.edu	36	9	93525753	93525753	+	3'UTR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
IARS	3376	broad.mit.edu	36	9	94091401	94091401	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CTSL2	1515	broad.mit.edu	36	9	98837805	98837805	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019271	91019271	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.1376delA	p.E459fs	.	.	.
TAF7L	54457	broad.mit.edu	36	X	100418002	100418002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024885	exon10	c.G1120A	p.E374K	.	.	.
TAF7L	54457	broad.mit.edu	36	X	100429141	100429141	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024885	exon2	c.T305G	p.F102C	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101797091	101797091	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099411	exon3	c.T1594C	p.S532P	.	.	.
GPRASP1	9737	broad.mit.edu	36	X	101799307	101799307	+	Nonsense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099411	exon3	c.T3810G	p.Y1270X	.	.	.
TCEAL4	79921	broad.mit.edu	36	X	102728425	102728425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024863	exon3	c.G166A	p.E56K	.	.	.
NRK	203447	broad.mit.edu	36	X	105012381	105012381	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon4	c.C205T	p.R69X	.	.	.
NRK	203447	broad.mit.edu	36	X	105053800	105053800	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon18	c.C2645T	p.P882L	.	.	.
TBC1D8B	54885	broad.mit.edu	36	X	105970007	105970007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198881	exon9	c.G1427A	p.R476Q	.	.	.
VSIG1	340547	broad.mit.edu	36	X	107196891	107196891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182607	exon3	c.G283A	p.D95N	.	.	.
COL4A6	1288	broad.mit.edu	36	X	107305625	107305625	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033641	exon29	c.T2745G	p.I915M	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107721503	107721503	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon21	c.G1396T	p.G466X	.	.	.
KCNE1L	23630	broad.mit.edu	36	X	108754768	108754768	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012282	exon1	c.C138T	p.F46F	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109581989	109581989	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020769	exon3	c.G1488T	p.K496N	.	.	.
IL13RA2	3598	broad.mit.edu	36	X	114144914	114144914	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000640	exon10	c.T1128G	p.F376L	.	.	.
IL13RA2	3598	broad.mit.edu	36	X	114146121	114146121	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000640	exon9	c.G1011A	p.S337S	.	.	.
MSL3	10943	broad.mit.edu	36	X	11690246	11690246	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006800	exon5	c.A44C	p.K15T	.	.	.
MSL3	10943	broad.mit.edu	36	X	11700704	11700704	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006800	exon11	c.G927T	p.K309N	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117564053	117564053	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon6	c.A504G	p.K168K	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117661508	117661508	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon40	c.C4321A	p.L1441I	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117680760	117680760	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon45	c.A5053G	p.M1685V	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117698671	117698671	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon49	c.A5659G	p.T1887A	.	.	.
ZCCHC12	170261	broad.mit.edu	36	X	117844415	117844415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173798	exon4	c.G1180A	p.E394K	.	.	.
KIAA1210	57481	broad.mit.edu	36	X	118106032	118106032	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020721	exon11	c.C3189A	p.F1063L	.	.	.
UBE2A	7319	broad.mit.edu	36	X	118599518	118599518	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003336	exon4	c.G172T	p.E58X	.	.	.
UPF3B	65109	broad.mit.edu	36	X	118869855	118869855	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080632	exon2	c.C166T	p.R56X	.	.	.
XIAP	331	broad.mit.edu	36	X	122862115	122862115	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167	exon6	c.T1191G	p.I397M	.	.	.
STAG2	10735	broad.mit.edu	36	X	123004116	123004116	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042750	exon7	c.A402C	p.E134D	.	.	.
STAG2	10735	broad.mit.edu	36	X	123008937	123008937	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042750	exon9	c.T720C	p.N240N	.	.	.
DCAF12L2	340578	broad.mit.edu	36	X	125127540	125127540	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013628	exon1	c.G49A	p.E17K	.	.	.
TLR7	51284	broad.mit.edu	36	X	12816330	12816330	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016562	exon3	c.C2782A	p.L928I	.	.	.
OCRL	4952	broad.mit.edu	36	X	128527523	128527523	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001587	exon13	c.A1338G	p.R446R	.	.	.
OCRL	4952	broad.mit.edu	36	X	128537993	128537993	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001587	exon18	c.C1898A	p.S633Y	.	.	.
SASH3	54440	broad.mit.edu	36	X	128754414	128754414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018990	exon6	c.G722A	p.R241H	.	.	.
ZDHHC9	51114	broad.mit.edu	36	X	128785388	128785388	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016032	exon5	c.G435T	p.K145N	.	.	.
BCORL1	63035	broad.mit.edu	36	X	128977628	128977628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021946	exon3	c.C3199T	p.R1067W	.	.	.
GPR119	139760	broad.mit.edu	36	X	129346607	129346607	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178471	exon1	c.G496A	p.V166M	.	.	.
ENOX2	10495	broad.mit.edu	36	X	129641300	129641300	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182314	exon7	c.C444T	p.F148F	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130244687	130244687	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001555	exon6	c.C900T	p.D300D	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130247671	130247671	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001555	exon4	c.T130C	p.S44P	.	.	.
HS6ST2	90161	broad.mit.edu	36	X	131590800	131590800	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077188	exon6	c.A1070T	p.N357I	.	.	.
USP26	83844	broad.mit.edu	36	X	131988729	131988729	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031907	exon1	c.G1186T	p.D396Y	.	.	.
CCDC160	347475	broad.mit.edu	36	X	133206716	133206716	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101357	exon2	c.G220A	p.E74K	.	.	.
PLAC1	10761	broad.mit.edu	36	X	133528016	133528016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021796	exon3	c.C363T	p.S121S	.	.	.
SLC9A6	10479	broad.mit.edu	36	X	134934160	134934160	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177651	exon13	c.C1312T	p.R438C	.	.	.
GPR112	139378	broad.mit.edu	36	X	135232871	135232871	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon5	c.C339T	p.H113H	.	.	.
GPR112	139378	broad.mit.edu	36	X	135313133	135313133	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153834	exon22	c.C8640T	p.S2880S	.	.	.
RAB9A	9367	broad.mit.edu	36	X	13637125	13637125	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195328	exon2	c.G339A	p.E113E	.	.	.
FGF13	2258	broad.mit.edu	36	X	137542765	137542765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139501	exon8	c.G593A	p.R198Q	.	.	.
FGF13	2258	broad.mit.edu	36	X	137620676	137620676	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004114	exon1	c.C156T	p.F52F	.	.	.
F9	2158	broad.mit.edu	36	X	138471660	138471660	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000133	exon8	c.C1150T	p.R384X	.	.	.
MCF2	4168	broad.mit.edu	36	X	138536113	138536113	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099855	exon9	c.G772A	p.D258N	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138736544	138736544	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010986	exon2	c.A141C	p.R47S	.	.	.
SPANXE	171489	broad.mit.edu	36	X	140613360	140613360	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145665	exon2	c.G222T	p.K74N	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140821515	140821515	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005462	exon4	c.G659T	p.R220I	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140821620	140821620	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005462	exon4	c.G764T	p.R255I	.	.	.
MAGEC1	9947	broad.mit.edu	36	X	140822087	140822087	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005462	exon4	c.C1231A	p.P411T	.	.	.
SLITRK4	139065	broad.mit.edu	36	X	142544307	142544307	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184749	exon2	c.T2284G	p.F762V	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142795181	142795181	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012989	exon1	c.G313A	p.V105I	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144713310	144713310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144003	exon5	c.G1675A	p.E559K	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144713437	144713437	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144003	exon5	c.C1802T	p.S601L	.	.	.
GLRA2	2742	broad.mit.edu	36	X	14502591	14502591	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001118886	exon3	c.G259T	p.E87X	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146870722	146870722	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152578	exon1	c.G108A	p.S36S	.	.	.
AFF2	2334	broad.mit.edu	36	X	147876623	147876623	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170628	exon17	c.C2567A	p.S856Y	.	.	.
FANCB	2187	broad.mit.edu	36	X	14792907	14792907	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018113	exon3	c.C647T	p.S216F	.	.	.
MTM1	4534	broad.mit.edu	36	X	149564919	149564919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000252	exon9	c.G784A	p.D262N	.	.	.
PASD1	139135	broad.mit.edu	36	X	150593113	150593113	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173493	exon15	c.C1974A	p.T658T	.	.	.
MAGEA10	4109	broad.mit.edu	36	X	151054106	151054106	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021048	exon4	c.C643T	p.L215L	.	.	.
MAGEA10	4109	broad.mit.edu	36	X	151054702	151054702	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021048	exon4	c.T47G	p.L16R	.	.	.
ABCD1	215	broad.mit.edu	36	X	152648004	152648004	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000033	exon2	c.T1024C	p.S342P	.	.	.
ARHGAP4	393	broad.mit.edu	36	X	152831382	152831382	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164741	exon13	c.G1628T	p.R543I	.	.	.
GAB3	139716	broad.mit.edu	36	X	153561643	153561643	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081573	exon9	c.C1607T	p.A536V	.	.	.
MPP1	4354	broad.mit.edu	36	X	153660693	153660693	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002436	exon12	c.C1354A	p.Q452K	.	.	.
F8	2157	broad.mit.edu	36	X	153741995	153741995	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon25	c.C6806A	p.S2269Y	.	.	.
F8	2157	broad.mit.edu	36	X	153811868	153811868	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon14	c.A3391G	p.T1131A	.	.	.
F8	2157	broad.mit.edu	36	X	153812819	153812819	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon14	c.C2440T	p.R814X	.	.	.
F8	2157	broad.mit.edu	36	X	153868755	153868755	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon5	c.G621T	p.K207N	.	.	.
ACE2	59272	broad.mit.edu	36	X	15498353	15498353	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021804	exon15	c.C1882T	p.L628F	.	.	.
ZRSR2	8233	broad.mit.edu	36	X	15750884	15750884	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005089	exon11	c.T1047C	p.S349S	.	.	.
GRPR	2925	broad.mit.edu	36	X	16078511	16078511	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005314	exon2	c.C576A	p.T192T	.	.	.
TXLNG	55787	broad.mit.edu	36	X	16760677	16760677	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018360	exon6	c.A875C	p.K292T	.	.	.
RBBP7	5931	broad.mit.edu	36	X	16780621	16780621	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002893	exon8	c.G937A	p.E313K	.	.	.
RBBP7	5931	broad.mit.edu	36	X	16780858	16780858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002893	exon7	c.G820A	p.E274K	.	.	.
REPS2	9185	broad.mit.edu	36	X	16934316	16934316	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004726	exon2	c.T325C	p.F109L	.	.	.
NHS	4810	broad.mit.edu	36	X	17653649	17653649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon7	c.G971A	p.R324H	.	.	.
NHS	4810	broad.mit.edu	36	X	17654967	17654967	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136024	exon7	c.C2289T	p.A763A	.	.	.
SCML2	10389	broad.mit.edu	36	X	18186264	18186264	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006089	exon10	c.G1094T	p.G365V	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18532249	18532249	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003159	exon12	c.C1284T	p.G428G	.	.	.
CDKL5	6792	broad.mit.edu	36	X	18556538	18556538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003159	exon18	c.C2623T	p.R875W	.	.	.
RS1	6247	broad.mit.edu	36	X	18600071	18600071	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000330	exon1	c.C39A	p.L13L	.	.	.
PPEF1	5475	broad.mit.edu	36	X	18658254	18658254	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152226	exon5	c.C81A	p.Y27X	.	.	.
PDHA1	5160	broad.mit.edu	36	X	19277379	19277379	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173454	exon3	c.A200C	p.N67T	.	.	.
PDHA1	5160	broad.mit.edu	36	X	19283399	19283399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173454	exon8	c.C729T	p.F243F	.	.	.
MAP3K15	389840	broad.mit.edu	36	X	19302541	19302541	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001671	exon20	c.G2748T	p.K916N	.	.	.
RPS6KA3	6197	broad.mit.edu	36	X	20092952	20092952	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004586	exon18	c.T1750G	p.F584V	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21534915	21534915	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014927	exon19	c.C2142A	p.P714P	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21537527	21537527	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014927	exon20	c.C2563A	p.H855N	.	.	.
PHEX	5251	broad.mit.edu	36	X	22005701	22005701	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000444	exon5	c.T623C	p.V208A	.	.	.
PHEX	5251	broad.mit.edu	36	X	22042545	22042545	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000444	exon11	c.A1222C	p.N408H	.	.	.
PHEX	5251	broad.mit.edu	36	X	22096425	22096425	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000444	exon13	c.G1480T	p.A494S	.	.	.
PTCHD1	139411	broad.mit.edu	36	X	23321393	23321393	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173495	exon3	c.T1837C	p.L613L	.	.	.
PTCHD1	139411	broad.mit.edu	36	X	23321965	23321965	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173495	exon3	c.C2409A	p.L803L	.	.	.
CXorf58	254158	broad.mit.edu	36	X	23866646	23866646	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152761	exon8	c.T847G	p.F283V	.	.	.
ZFX	7543	broad.mit.edu	36	X	24135369	24135369	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178084	exon4	c.G652A	p.D218N	.	.	.
ZBED1	9189	broad.mit.edu	36	X	2416844	2416844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004729	exon2	c.G1917A	p.A639A	.	.	.
Unknown	0	broad.mit.edu	36	X	24240271	24240271	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136233	exon1	c.G1083A	p.P361P	.	.	.
Unknown	0	broad.mit.edu	36	X	24291868	24291868	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136234	exon1	c.C1070T	p.S357L	.	.	.
PCYT1B	9468	broad.mit.edu	36	X	24490338	24490338	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163264	exon8	c.A1049G	p.E350G	.	.	.
POLA1	5422	broad.mit.edu	36	X	24643205	24643205	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016937	exon6	c.T471C	p.G157G	.	.	.
POLA1	5422	broad.mit.edu	36	X	24669445	24669445	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016937	exon21	c.A2231G	p.H744R	.	.	.
XG	7499	broad.mit.edu	36	X	2698596	2698596	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141919	exon2	c.A67C	p.R23R	.	.	.
MAGEB3	4114	broad.mit.edu	36	X	30164650	30164650	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002365	exon5	c.A688G	p.M230V	.	.	.
NR0B1	190	broad.mit.edu	36	X	30232748	30232748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000475	exon2	c.G1282A	p.E428K	.	.	.
ARSF	416	broad.mit.edu	36	X	3040225	3040225	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004042	exon11	c.T1401G	p.V467V	.	.	.
GK	2710	broad.mit.edu	36	X	30648680	30648680	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128127	exon16	c.G1240T	p.D414Y	.	.	.
DMD	1756	broad.mit.edu	36	X	31406301	31406301	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004009	exon59	c.G8768T	p.R2923I	.	.	.
DMD	1756	broad.mit.edu	36	X	31424900	31424900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004009	exon57	c.G8461A	p.D2821N	.	.	.
DMD	1756	broad.mit.edu	36	X	32308673	32308673	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004009	exon34	c.C4708T	p.R1570C	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3237963	3237963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon7	c.C8281T	p.P2761S	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3239424	3239424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon7	c.G6820A	p.E2274K	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3250192	3250192	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon5	c.G3534T	p.E1178D	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3250874	3250874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon5	c.C2852T	p.S951L	.	.	.
DMD	1756	broad.mit.edu	36	X	32627297	32627297	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004009	exon8	c.C672A	p.I224I	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34058783	34058783	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203408	exon1	c.C1534T	p.R512C	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34058822	34058822	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203408	exon1	c.C1495T	p.R499C	.	.	.
FAM47A	158724	broad.mit.edu	36	X	34059281	34059281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203408	exon1	c.C1036T	p.R346W	.	.	.
TMEM47	83604	broad.mit.edu	36	X	34567352	34567352	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031442	exon2	c.G300T	p.L100F	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36938148	36938148	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013736	exon1	c.C1744A	p.L582I	.	.	.
BCOR	54880	broad.mit.edu	36	X	39799667	39799667	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017745	exon12	c.C4537T	p.R1513X	.	.	.
BCOR	54880	broad.mit.edu	36	X	39817344	39817344	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017745	exon4	c.G2199A	p.T733T	.	.	.
ATP6AP2	10159	broad.mit.edu	36	X	40349940	40349940	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005765	exon9	c.C1042T	p.R348X	.	.	.
USP9X	8239	broad.mit.edu	36	X	40960503	40960503	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon35	c.C5739T	p.D1913D	.	.	.
DDX3X	1654	broad.mit.edu	36	X	41086719	41086719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001356	exon5	c.C312T	p.Y104Y	.	.	.
DDX3X	1654	broad.mit.edu	36	X	41091105	41091105	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001356	exon15	c.T1665G	p.D555E	.	.	.
GPR34	2857	broad.mit.edu	36	X	41440864	41440864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097579	exon3	c.G1034A	p.R345Q	.	.	.
KDM6A	7403	broad.mit.edu	36	X	44807902	44807902	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021140	exon16	c.G1819A	p.V607M	.	.	.
SLC9A7	84679	broad.mit.edu	36	X	46426786	46426786	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032591	exon2	c.G454A	p.E152K	.	.	.
RP2	6102	broad.mit.edu	36	X	46598053	46598053	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006915	exon2	c.T301C	p.F101L	.	.	.
ZNF157	7712	broad.mit.edu	36	X	47157129	47157129	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003446	exon4	c.G713T	p.R238I	.	.	.
ZNF41	7592	broad.mit.edu	36	X	47193673	47193673	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153380	exon5	c.G440A	p.R147H	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47720661	47720661	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006962	exon7	c.G1769T	p.R590I	.	.	.
ZNF182	7569	broad.mit.edu	36	X	47721582	47721582	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006962	exon7	c.C848A	p.T283N	.	.	.
GATA1	2623	broad.mit.edu	36	X	48535798	48535798	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002049	exon4	c.C723A	p.L241L	.	.	.
HDAC6	10013	broad.mit.edu	36	X	48567532	48567532	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006044	exon28	c.C3463T	p.R1155C	.	.	.
PIM2	11040	broad.mit.edu	36	X	48657255	48657255	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006875	exon4	c.A581C	p.Y194S	.	.	.
KCND1	3750	broad.mit.edu	36	X	48710661	48710661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004979	exon1	c.G962A	p.S321N	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48956160	48956160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon33	c.C3886T	p.R1296C	.	.	.
CLCN5	1184	broad.mit.edu	36	X	49737877	49737877	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127898	exon11	c.C1167T	p.L389L	.	.	.
CCNB3	85417	broad.mit.edu	36	X	50070613	50070613	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033031	exon5	c.C2704A	p.P902T	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53612444	53612444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon49	c.C6640T	p.R2214W	.	.	.
FAM120C	54954	broad.mit.edu	36	X	54202772	54202772	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017848	exon2	c.C702A	p.V234V	.	.	.
GNL3L	54552	broad.mit.edu	36	X	54603722	54603722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019067	exon16	c.G1711A	p.D571N	.	.	.
ITIH5L	347365	broad.mit.edu	36	X	54800617	54800617	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198510	exon8	c.C2615T	p.S872F	.	.	.
MAGED2	10916	broad.mit.edu	36	X	54852527	54852527	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201222	exon2	c.G38A	p.R13H	.	.	.
TRO	7216	broad.mit.edu	36	X	54971840	54971840	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016157	exon12	c.C1958A	p.A653D	.	.	.
TRO	7216	broad.mit.edu	36	X	54973662	54973662	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039705	exon12	c.T3780G	p.G1260G	.	.	.
RRAGB	10325	broad.mit.edu	36	X	55799029	55799029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016656	exon9	c.C850T	p.R284C	.	.	.
SPIN3	169981	broad.mit.edu	36	X	57037432	57037432	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010862	exon2	c.C674T	p.T225I	.	.	.
SPIN3	169981	broad.mit.edu	36	X	57038069	57038069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010862	exon2	c.C37T	p.R13W	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57951220	57951220	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007156	exon1	c.G2360T	p.R787I	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57952050	57952050	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007156	exon1	c.C1530T	p.F510F	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831528	5831528	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181332	exon5	c.C1191A	p.F397L	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63328487	63328487	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152424	exon2	c.G1405T	p.E469X	.	.	.
STARD8	9754	broad.mit.edu	36	X	67851867	67851867	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142503	exon4	c.C158T	p.S53L	.	.	.
EFNB1	1947	broad.mit.edu	36	X	67976603	67976603	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004429	exon4	c.C575T	p.A192V	.	.	.
KIF4A	24137	broad.mit.edu	36	X	69480288	69480288	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012310	exon12	c.C1277T	p.A426V	.	.	.
GDPD2	54857	broad.mit.edu	36	X	69568971	69568971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017711	exon13	c.C1397T	p.S466L	.	.	.
MED12	9968	broad.mit.edu	36	X	70274138	70274138	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005120	exon40	c.T5754C	p.S1918S	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70291832	70291832	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166660	exon3	c.C501T	p.H167H	.	.	.
NLGN3	54413	broad.mit.edu	36	X	70304081	70304081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166660	exon5	c.G1289A	p.R430H	.	.	.
NONO	4841	broad.mit.edu	36	X	70430937	70430937	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145408	exon6	c.G484A	p.E162K	.	.	.
TAF1	6872	broad.mit.edu	36	X	70594934	70594934	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138923	exon35	c.T5054G	p.V1685G	.	.	.
RGAG4	340526	broad.mit.edu	36	X	71266485	71266485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024455	exon1	c.G1631A	p.R544Q	.	.	.
NHSL2	340527	broad.mit.edu	36	X	71276562	71276562	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013627	exon6	c.T2439C	p.T813T	.	.	.
KIAA2022	340533	broad.mit.edu	36	X	73880774	73880774	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008537	exon3	c.C343T	p.P115S	.	.	.
UPRT	139596	broad.mit.edu	36	X	74430064	74430064	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145052	exon2	c.C419T	p.A140V	.	.	.
UPRT	139596	broad.mit.edu	36	X	74432947	74432947	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145052	exon3	c.G475T	p.E159X	.	.	.
ZDHHC15	158866	broad.mit.edu	36	X	74565722	74565722	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146256	exon6	c.C492A	p.F164L	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650348	82650348	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000307	exon1	c.G360A	p.P120P	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650487	82650487	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000307	exon1	c.C499T	p.R167X	.	.	.
CYLC1	1538	broad.mit.edu	36	X	83014935	83014935	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021118	exon4	c.C563A	p.S188Y	.	.	.
RPS6KA6	27330	broad.mit.edu	36	X	83248701	83248701	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014496	exon14	c.C1115A	p.S372Y	.	.	.
HDX	139324	broad.mit.edu	36	X	83475439	83475439	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177479	exon9	c.C1808A	p.S603Y	.	.	.
KAL1	3730	broad.mit.edu	36	X	8525162	8525162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000216	exon4	c.G454A	p.E152K	.	.	.
DACH2	117154	broad.mit.edu	36	X	85836706	85836706	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053281	exon5	c.G799T	p.D267Y	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86773996	86773996	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057162	exon7	c.C1455T	p.D485D	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86775424	86775424	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057162	exon8	c.A1569G	p.G523G	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86777338	86777338	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057162	exon9	c.G1832T	p.G611V	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895105	87895105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184771	exon3	c.G34A	p.A12T	.	.	.
CPXCR1	53336	broad.mit.edu	36	X	87895367	87895367	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184771	exon3	c.A296C	p.K99T	.	.	.
PABPC5	140886	broad.mit.edu	36	X	90578247	90578247	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080832	exon2	c.C1015T	p.Q339X	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019563	91019563	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.C1668A	p.V556V	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91019749	91019749	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.T1854C	p.I618I	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91020792	91020792	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon2	c.T2897C	p.L966P	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91760516	91760516	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon7	c.C3965A	p.P1322H	.	.	.
FAM133A	286499	broad.mit.edu	36	X	92851301	92851301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171110	exon5	c.G227A	p.S76N	.	.	.
NXF5	55998	broad.mit.edu	36	X	100978368	100978368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	106730183	106730183	+	IGR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	106924110	106924110	+	IGR	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GUCY2F	2986	broad.mit.edu	36	X	108512000	108512000	+	Intron	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UPF3B	65109	broad.mit.edu	36	X	118859257	118859257	+	Intron	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FRMPD4	9758	broad.mit.edu	36	X	12602958	12602958	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EGFL6	25975	broad.mit.edu	36	X	13547285	13547285	+	Splice_Site	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FGF13	2258	broad.mit.edu	36	X	137612801	137612801	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	146126140	146126140	+	IGR	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
AFF2	2334	broad.mit.edu	36	X	147732590	147732590	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ATP2B3	492	broad.mit.edu	36	X	152498962	152498962	+	3'UTR	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21398793	21398793	+	Intron	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21534813	21534813	+	Intron	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	26089014	26089014	+	IGR	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DMD	1756	broad.mit.edu	36	X	31134613	31134613	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	47543086	47543086	+	IGR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	47547968	47547968	+	IGR	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SSX6	280657	broad.mit.edu	36	X	47863909	47863909	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SMC1A	8243	broad.mit.edu	36	X	53457122	53457122	+	Intron	SNP	C	T	T	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
ZC4H2	55906	broad.mit.edu	36	X	64058418	64058418	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
EDA	1896	broad.mit.edu	36	X	68757465	68757465	+	Intron	SNP	G	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TEX11	56159	broad.mit.edu	36	X	69806941	69806941	+	Intron	SNP	A	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
TSIX	9383	broad.mit.edu	36	X	72959486	72959486	+	RNA	SNP	T	C	C	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
XIST	7503	broad.mit.edu	36	X	72978239	72978239	+	RNA	SNP	T	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
XIST	7503	broad.mit.edu	36	X	72980960	72980960	+	RNA	SNP	C	A	A	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
XIST	7503	broad.mit.edu	36	X	72983088	72983088	+	RNA	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
XIST	7503	broad.mit.edu	36	X	72984441	72984441	+	RNA	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
Unknown	0	broad.mit.edu	36	X	73423690	73423690	+	IGR	SNP	A	G	G	novel	unknown	TCGA-AA-A010-01A-01W-A00E-09	TCGA-AA-A010-10A-01W-A00E-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
