Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
RPL32	6161	genome.wustl.edu	36	3	12855994	12855994	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	12855994	12855994	C	A	SNP	RPL32	NM_000994	human	genbank	54_36p	-1	reviewed	missense	c.132	p.R44S	1.000	superfamily_Ribosomal protein L32e,HMMPfam_Ribosomal_L32e	superfamily_Ribosomal protein L32e,HMMPfam_Ribosomal_L32e,PatternScan_RIBOSOMAL_L32E	-	no_errors
LOC100133234	100133234	genome.wustl.edu	36	8	56529203	56529203	+	RNA	SNP	A	A	G			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	56529203	56529203	A	G	SNP	LOC100133234	XR_038021	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.803	-	-	-	pseudogene
RYR3	6263	genome.wustl.edu	36	15	31835807	31835807	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	31835807	31835807	G	A	SNP	RYR3	NM_001036	human	genbank	54_36p	+1	validated	missense	c.8524	p.V2842I	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
RNPEPL1	57140	genome.wustl.edu	36	2	241163647	241163647	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	241163647	241163647	C	A	SNP	RNPEPL1	NM_018226	human	genbank	54_36p	+1	provisional	missense	c.764	p.S255Y	1.000	superfamily_SSF55486	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_ARM-type_fold,HMMPfam_Leuk-A4-hydro_C	-	no_errors
C7orf29	113763	genome.wustl.edu	36	7	149658979	149658979	+	Silent	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149658979	149658979	C	T	SNP	C7orf29	NM_138434	human	genbank	54_36p	+1	validated	silent	c.553	p.L185	0.015	NULL	NULL	-	no_errors
LOC100131868	100131868	genome.wustl.edu	36	3	198848209	198848209	+	RNA	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	198848209	198848209	G	A	SNP	LOC100131868	XR_038143	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LMOD1	25802	genome.wustl.edu	36	1	200181928	200181928	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	200181928	200181928	G	A	SNP	LMOD1	ENST00000367288	human	ensembl	54_36p	-1	known	missense	c.164	p.T55M	1.000	HMMPfam_Tropomodulin	HMMPfam_Tropomodulin,superfamily_SSF52047,HMMPfam_WH2	-	no_errors
ABCC1	4363	genome.wustl.edu	36	16	16073088	16073089	+	Splice_Site	DEL	GT	GT	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	GT	GT			GT	GT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	16073088	16073089	GT	-	DEL	ABCC1	NM_004996	human	genbank	54_36p	+1	reviewed	splice_site_del	c.1912+1_1912+1	e14+1	0.982:0.981	-	-	-	no_errors
PEX13	5194	genome.wustl.edu	36	2	61112441	61112441	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	61112441	61112441	G	-	DEL	PEX13	NM_002618	human	genbank	54_36p	+1	reviewed	frame_shift_del	c.476	p.A160fs	1.000	HMMPfam_Peroxin-13_N	HMMPfam_Peroxin-13_N,superfamily_SH3-domain,HMMPfam_SH3_1,HMMSmart_SM00326	-	no_errors
CC2D2A	57545	genome.wustl.edu	36	4	15178450	15178450	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	15178450	15178450	C	T	SNP	CC2D2A	NM_001080522	human	genbank	54_36p	+1	validated	missense	c.3341	p.T1114M	0.971	HMMSmart_C2	HMMSmart_C2	-	no_errors
WNK1	65125	genome.wustl.edu	36	12	831174	831176	+	In_Frame_Del	DEL	TGC	TGC	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	TGC	TGC			TGC	TGC	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	831174	831176	TGC	-	DEL	WNK1	ENST00000340908	human	ensembl	54_36p	+1	known	in_frame_del	c.55_57	p.C22in_frame_del	1.000:1.000:1.000	NULL	superfamily_Kinase_like	-	no_errors
LOC100132516	100132516	genome.wustl.edu	36	9	67900298	67900298	+	RNA	SNP	G	G	C			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	67900298	67900298	G	C	SNP	LOC100132516	XR_037086	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC643342	643342	genome.wustl.edu	36	9	97095390	97095391	+	RNA	DEL	TG	TG	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	TG	TG			TG	TG	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	97095390	97095391	TG	-	DEL	LOC643342	XR_016301	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.996:0.998	-	-	-	pseudogene
LNX1	84708	genome.wustl.edu	36	4	54069006	54069006	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	54069006	54069006	C	T	SNP	LNX1	NM_032622	human	genbank	54_36p	-1	reviewed	missense	c.238	p.E80K	0.988	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ	-	no_errors
KRTAP9-9	81870	genome.wustl.edu	36	17	36665430	36665430	+	Silent	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	36665430	36665430	C	T	SNP	KRTAP9-9	NM_030975	human	genbank	54_36p	+1	reviewed	silent	c.222	p.S74	0.398	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
ASMTL	8623	genome.wustl.edu	36	X	1506842	1506842	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	1506842	1506842	A	G	SNP	ASMTL	NM_004192	human	genbank	54_36p	-1	validated	missense	c.682	p.S228P	0.995	HMMPfam_Maf	"HMMPfam_Methyltransf_2,HMMPfam_Maf,superfamily_""Winged helix"" DNA-binding domain,superfamily_Maf/Ham1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases"	-	no_errors
TRIM48	79097	genome.wustl.edu	36	11	54789725	54789725	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	54789725	54789725	C	A	SNP	TRIM48	NM_024114	human	genbank	54_36p	+1	validated	missense	c.485	p.T162N	0.000	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
KDM2B	84678	genome.wustl.edu	36	12	120364831	120364833	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	CTT	CTT			CTT	CTT	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	120364831	120364833	CTT	-	DEL	FBXL10	NM_032590	human	genbank	54_36p	-1	reviewed	in_frame_del	c.2796_2794	p.K932in_frame_del	0.989:0.993:0.990	NULL	HMMPfam_F-box,HMMSmart_SM00249,HMMPfam_zf-CXXC,HMMSmart_SM00558,HMMSmart_SM00367,superfamily_FYVE/PHD zinc finger,HMMPfam_JmjC,superfamily_Clavaminate synthase-like,superfamily_RNI-like	-	no_errors
FNIP2	57600	genome.wustl.edu	36	4	159974210	159974210	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	159974210	159974210	G	A	SNP	FNIP2	NM_020840	human	genbank	54_36p	+1	validated	missense	c.635	p.C212Y	0.998	NULL	NULL	-	no_errors
TAS2R38	5726	genome.wustl.edu	36	7	141319023	141319023	+	Silent	SNP	C	C	G			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	141319023	141319023	C	G	SNP	TAS2R38	NM_176817	human	genbank	54_36p	-1	validated	silent	c.936	p.L312	0.001	superfamily_SSF81321,HMMPfam_TAS2R	superfamily_SSF81321,HMMPfam_TAS2R	-	no_errors
ENSG00000205822	0	genome.wustl.edu	36	13	24066489	24066489	+	Silent	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	24066489	24066489	G	A	SNP	ENSG00000205822	ENST00000381974	human	ensembl	54_36p	+1	known	silent	c.258	p.Q86	0.000	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	HMMPfam_PTEN_C2,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CACNA1S	779	genome.wustl.edu	36	1	199321250	199321250	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	199321250	199321250	G	A	SNP	CACNA1S	NM_000069	human	genbank	54_36p	-1	reviewed	missense	c.1087	p.L363F	1.000	NULL	superfamily_SSF81324,HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ	-	no_errors
ENSG00000222666	0	genome.wustl.edu	36	10	28737034	28737034	+	RNA	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	28737034	28737034	C	T	SNP	ENSG00000222666	ENST00000410734	human	ensembl	54_36p	-1	novel	rna	NULL	NULL	0.277	-	-	-	no_errors
POU5F1	5460	genome.wustl.edu	36	6	31240983	31240983	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31240983	31240983	G	T	SNP	POU5F1	NM_002701	human	genbank	54_36p	-1	validated	missense	c.717	p.N239K	0.995	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	HMMPfam_Pou,HMMSmart_SM00352,superfamily_lambda repressor-like DNA-binding domains,PatternScan_POU_1,PatternScan_POU_2,superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox,PatternScan_HOMEOBOX_1	-	no_errors
LOC147804	147804	genome.wustl.edu	36	19	58638641	58638641	+	RNA	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	58638641	58638641	G	A	SNP	LOC147804	NR_003148	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.000	-	-	-	pseudogene
MPPE1	65258	genome.wustl.edu	36	18	11879416	11879416	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	11879416	11879416	G	T	SNP	MPPE1	NM_023075	human	genbank	54_36p	-1	validated	missense	c.464	p.A155D	0.980	superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos	superfamily_Metallo-dependent phosphatases,HMMPfam_Metallophos,PatternScan_HEMOPEXIN	-	no_errors
HMX1	3166	genome.wustl.edu	36	4	40346	40346	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	40346	40346	G	A	SNP	HMX1	NM_018942	human	genbank	54_36p	-1	validated	missense	c.752	p.P251L	0.000	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
MT-CO1	0	genome.wustl.edu	36	MT	7207	7207	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	MT	7207	7207	G	A	SNP	MT-CO1	ENST00000361624	human	ensembl	54_36p	+1	known	nonsense	c.1303	p.G435*	NULL	HMMPfam_COX1,superfamily_Cytochrome c oxidase subunit I-like	HMMPfam_COX1,PatternScan_COX1_CUB,superfamily_Cytochrome c oxidase subunit I-like	-	no_stop_codon
TUBA1A	7846	genome.wustl.edu	36	12	47865247	47865247	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47865247	47865247	C	T	SNP	TUBA1A	NM_006009	human	genbank	54_36p	-1	reviewed	missense	c.1169	p.R390H	1.000	superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	superfamily_Tubulin nucleotide-binding domain-like,HMMPfam_Tubulin,PatternScan_TUBULIN,superfamily_Tubulin C-terminal domain-like,HMMPfam_Tubulin_C	-	no_errors
FSD2	123722	genome.wustl.edu	36	15	81252794	81252794	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2803-03B-01W-0728-08	TCGA-AB-2803-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	81252794	81252794	C	T	SNP	FSD2	NM_001007122	human	genbank	54_36p	-1	provisional	missense	c.403	p.G135R	0.000	NULL	HMMSmart_FN3,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_SPRY	-	no_errors
