Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU
TXNIP	10628	genome.wustl.edu	36	1	144151820	144151820	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	144151820	144151820	G	A	SNP	TXNIP	NM_006472	human	genbank	54_36p	+1	validated	missense	c.769	p.V257I	1.000	superfamily_Ig_E-set,HMMPfam_Arrestin_C	superfamily_Ig_E-set,HMMPfam_Arrestin_N,HMMPfam_Arrestin_C	-	no_errors
C9orf78	51759	genome.wustl.edu	36	9	131630321	131630321	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	131630321	131630321	G	C	SNP	C9orf78	NM_016520	human	genbank	54_36p	-1	validated	missense	c.810	p.N270K	0.973	NULL	HMMPfam_Hep_59	-	no_errors
OR3A2	4995	genome.wustl.edu	36	17	3128257	3128257	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	3128257	3128257	C	T	SNP	OR3A2	NM_002551	human	genbank	54_36p	-1	validated	silent	c.723	p.E241	0.201	superfamily_SSF81321,HMMPfam_7tm_1	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
PRPS2	5634	genome.wustl.edu	36	X	12750756	12750756	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	12750756	12750756	T	C	SNP	PRPS2	NM_001039091	human	genbank	54_36p	+1	validated	missense	c.886	p.S296P	1.000	superfamily_SSF53271	superfamily_SSF53271,PatternScan_PRPP_SYNTHETASE,HMMPfam_Pribosyltran	-	no_errors
CALCB	797	genome.wustl.edu	36	11	15052872	15052872	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	15052872	15052872	C	T	SNP	CALCB	NM_000728	human	genbank	54_36p	+1	validated	missense	c.32	p.A11V	1.000	NULL	HMMPfam_Calc_CGRP_IAPP,HMMSmart_SM00113,PatternScan_CALCITONIN	-	no_errors
CDAN1	146059	genome.wustl.edu	36	15	40808601	40808601	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	40808601	40808601	C	T	SNP	CDAN1	NM_138477	human	genbank	54_36p	-1	validated	missense	c.2557	p.A853T	1.000	NULL	NULL	-	no_errors
SFXN1	94081	genome.wustl.edu	36	5	174873099	174873099	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	174873099	174873099	G	-	DEL	SFXN1	NM_022754	human	genbank	54_36p	+1	validated	frame_shift_del	c.624	p.D209fs	0.911	HMMPfam_Mtc	HMMPfam_Mtc	-	no_errors
AARS	16	genome.wustl.edu	36	16	68850557	68850557	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	68850557	68850557	C	T	SNP	AARS	NM_001605	human	genbank	54_36p	-1	reviewed	missense	c.1819	p.A607T	1.000	superfamily_Thr/Ala-tRNA-synth_IIc_edit	superfamily_SSF55681,HMMPfam_tRNA-synt_2c,superfamily_Ala-tRNA-synth_IIc_anticod-bd,superfamily_Thr/Ala-tRNA-synth_IIc_edit,HMMPfam_tRNA_SAD,HMMPfam_DHHA1	-	no_errors
SETD3	84193	genome.wustl.edu	36	14	98934892	98934892	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	98934892	98934892	G	C	SNP	SETD3	NM_032233	human	genbank	54_36p	-1	validated	missense	c.1662	p.N554K	0.645	NULL	superfamily_SET domain,HMMPfam_SET,superfamily_RuBisCo LSMT C-terminal substrate-binding domain,HMMPfam_Rubis-subs-bind	-	no_errors
MORC2	22880	genome.wustl.edu	36	22	29667899	29667899	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	29667899	29667899	G	T	SNP	MORC2	NM_014941	human	genbank	54_36p	-1	provisional	missense	c.491	p.A164E	1.000	superfamily_ATP_bd_ATPase	superfamily_ATP_bd_ATPase,HMMPfam_zf-CW	-	no_errors
ZSWIM5	57643	genome.wustl.edu	36	1	45298500	45298500	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	45298500	45298500	G	C	SNP	ZSWIM5	NM_020883	human	genbank	54_36p	-1	validated	missense	c.959	p.P320R	1.000	NULL	HMMPfam_SWIM	-	no_errors
KITLG	4254	genome.wustl.edu	36	12	87452601	87452601	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	87452601	87452601	G	T	SNP	KITLG	ENST00000378535	human	ensembl	54_36p	-1	known	missense	c.22	p.Q8K	0.002	superfamily_4_helix_cytokine,HMMPfam_SCF	superfamily_4_helix_cytokine,HMMPfam_SCF	-	no_errors
VDAC1	7416	genome.wustl.edu	36	5	133336390	133336390	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	133336390	133336390	G	A	SNP	VDAC1	NM_003374	human	genbank	54_36p	-1	provisional	missense	c.823	p.L275F	1.000	HMMPfam_Porin_3	HMMPfam_Porin_3,PatternScan_EUKARYOTIC_PORIN	-	no_errors
ENSG00000216522	0	genome.wustl.edu	36	NT_113923	90800	90800	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	NT_113923	90800	90800	G	T	SNP	ENSG00000216522	ENST00000402757	human	ensembl	54_36p	-1	known	silent	c.420	p.G140	NULL	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62055293	62055293	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62055293	62055293	G	A	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.3172	p.P1058S	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_CheC	-	no_errors
GRM6	2916	genome.wustl.edu	36	5	178346338	178346338	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	178346338	178346338	C	T	SNP	GRM6	NM_000843	human	genbank	54_36p	-1	reviewed	missense	c.1523	p.G508D	0.740	superfamily_SSF53822	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_SSF53822	-	no_errors
SLC28A1	9154	genome.wustl.edu	36	15	83279310	83279310	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	83279310	83279310	G	A	SNP	SLC28A1	NM_004213	human	genbank	54_36p	+1	validated	missense	c.1264	p.V422M	0.866	HMMPfam_Nucleos_tra2_C	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
PML	5371	genome.wustl.edu	36	15	72123804	72123804	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72123804	72123804	T	C	SNP	PML	NM_033238	human	genbank	54_36p	+1	reviewed	missense	c.2051	p.L684P	0.111	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4,PatternScan_ZF_RING_1,HMMPfam_zf-B_box,HMMSmart_SM00336	-	no_errors
GSTA4	2941	genome.wustl.edu	36	6	52958255	52958255	+	Silent	SNP	T	T	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	52958255	52958255	T	G	SNP	GSTA4	NM_001512	human	genbank	54_36p	-1	reviewed	silent	c.225	p.I75	0.957	superfamily_Thioredoxin-like,HMMPfam_GST_N	superfamily_Thioredoxin-like,HMMPfam_GST_N,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_GST_C	-	no_errors
NEBL	10529	genome.wustl.edu	36	10	21290622	21290622	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	21290622	21290622	C	A	SNP	NEBL	NM_213569	human	genbank	54_36p	-1	validated	missense	c.342	p.Q114H	1.000	HMMSmart_NEBU,HMMPfam_Nebulin	superfamily_SSF57716,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM,HMMSmart_NEBU,HMMPfam_Nebulin,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
CA6	765	genome.wustl.edu	36	1	8953522	8953522	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	8953522	8953522	C	T	SNP	CA6	NM_001215	human	genbank	54_36p	+1	reviewed	silent	c.739	p.L247	0.008	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase	superfamily_Euk_COanhd,HMMPfam_Carb_anhydrase,PatternScan_ALPHA_CA_1	-	no_errors
SPATA20	64847	genome.wustl.edu	36	17	45987859	45987859	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	45987859	45987859	T	G	SNP	SPATA20	NM_022827	human	genbank	54_36p	+1	provisional	missense	c.2246	p.I749S	0.942	NULL	HMMPfam_DUF255,superfamily_Thioredoxin-like,superfamily_Six-hairpin glycosidases	-	no_errors
MEI1	150365	genome.wustl.edu	36	22	40496850	40496850	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	40496850	40496850	C	T	SNP	MEI1	NM_152513	human	genbank	54_36p	+1	validated	missense	c.2483	p.A828V	0.021	NULL	superfamily_ARM repeat	-	no_errors
NINL	22981	genome.wustl.edu	36	20	25455138	25455138	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	25455138	25455138	C	T	SNP	NLP	NM_025176	human	genbank	54_36p	-1	validated	missense	c.86	p.R29H	0.151	HMMSmart_EFh,superfamily_SSF47473	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
GLTP	51228	genome.wustl.edu	36	12	108780903	108780903	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	108780903	108780903	G	A	SNP	GLTP	NM_016433	human	genbank	54_36p	-1	reviewed	missense	c.130	p.P44S	0.999	superfamily_Glycolipid transfer protein GLTP,HMMPfam_GLTP	superfamily_Glycolipid transfer protein GLTP,HMMPfam_GLTP	-	no_errors
TGIF1	7050	genome.wustl.edu	36	18	3446467	3446467	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	3446467	3446467	G	T	SNP	TGIF1	NM_170695	human	genbank	54_36p	+1	reviewed	missense	c.519	p.K173N	1.000	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	superfamily_Homeodomain-like,HMMSmart_SM00389,HMMPfam_Homeobox	-	no_errors
PFKFB1	5207	genome.wustl.edu	36	X	54978111	54978111	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	54978111	54978111	C	T	SNP	PFKFB1	NM_002625	human	genbank	54_36p	-1	reviewed	missense	c.1285	p.A429T	1.000	superfamily_SSF53254	HMMPfam_6PF2K,superfamily_SSF52540,HMMPfam_PGAM,superfamily_SSF53254,PatternScan_PG_MUTASE	-	no_errors
TRMT5	57570	genome.wustl.edu	36	14	60516053	60516053	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	60516053	60516053	C	G	SNP	TRMT5	NM_020810	human	genbank	54_36p	-1	validated	missense	c.316	p.V106L	0.861	NULL	superfamily_SSF53335,HMMPfam_Met_10	-	no_errors
LIPC	3990	genome.wustl.edu	36	15	56511583	56511583	+	Silent	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	56511583	56511583	A	G	SNP	LIPC	NM_000236	human	genbank	54_36p	+1	reviewed	silent	c.60	p.S20	0.405	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase	superfamily_alpha/beta-Hydrolases,HMMPfam_Lipase,PatternScan_LIPASE_SER,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PLAT,HMMSmart_SM00308	-	no_errors
FAT2	2196	genome.wustl.edu	36	5	150889123	150889123	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	150889123	150889123	G	C	SNP	FAT2	NM_001447	human	genbank	54_36p	-1	reviewed	missense	c.9835	p.L3279V	0.985	superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin,HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NRXN1	9378	genome.wustl.edu	36	2	50611899	50611899	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	50611899	50611899	C	T	SNP	NRXN1	NM_004801	human	genbank	54_36p	-1	reviewed	missense	c.2317	p.A773T	0.977	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00282,HMMPfam_Laminin_G_2,HMMSmart_SM00181,superfamily_EGF/Laminin,HMMPfam_EGF,PatternScan_ASX_HYDROXYL,HMMSmart_SM00294	-	no_errors
EDC4	23644	genome.wustl.edu	36	16	66474133	66474133	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66474133	66474133	G	A	SNP	EDC4	NM_014329	human	genbank	54_36p	+1	validated	missense	c.3493	p.E1165K	1.000	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ENTPD5	957	genome.wustl.edu	36	14	73519532	73519532	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	73519532	73519532	T	-	DEL	ENTPD5	NM_001249	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.383	p.K128fs	1.000	HMMPfam_GDA1_CD39	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE	-	no_errors
WNT2B	7482	genome.wustl.edu	36	1	112861362	112861362	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	112861362	112861362	C	A	SNP	WNT2B	NM_024494	human	genbank	54_36p	+1	reviewed	missense	c.778	p.R260S	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
DNAH1	25981	genome.wustl.edu	36	3	52379042	52379042	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	52379042	52379042	G	T	SNP	DNAH1	ENST00000273600	human	ensembl	54_36p	+1	known	missense	c.6105	p.E2035D	0.001	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA_5,HMMPfam_Dynein_heavy	-	no_errors
VARS2	57176	genome.wustl.edu	36	6	30998687	30998687	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30998687	30998687	G	C	SNP	VARS2	NM_020442	human	genbank	54_36p	+1	provisional	missense	c.2140	p.G714R	1.000	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase	-	no_errors
PRKCE	5581	genome.wustl.edu	36	2	46065241	46065241	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	46065241	46065241	C	A	SNP	PRKCE	NM_005400	human	genbank	54_36p	+1	reviewed	silent	c.741	p.I247	1.000	superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,superfamily_Cysteine-rich domain,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_C1_1,superfamily_Protein kinase-like (PK-like),HMMSmart_SM00219,HMMSmart_SM00220,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST,HMMSmart_SM00133,HMMPfam_Pkinase_C	-	no_errors
FBXO11	80204	genome.wustl.edu	36	2	47890258	47890259	+	Frame_Shift_Ins	INS	-	-	GA			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	47890258	47890259	-	GA	INS	FBXO11	NM_025133	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.2179_2178	p.N726fs	1.000:1.000	superfamily_SSF81383,superfamily_Pectin_lyas_like,HMMSmart_CASH,HMMSmart_PbH1	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383,superfamily_Pectin_lyas_like,HMMSmart_PbH1,HMMSmart_CASH,HMMPfam_zf-UBR	-	no_errors
SLC26A9	115019	genome.wustl.edu	36	1	204154635	204154635	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	204154635	204154635	G	T	SNP	SLC26A9	NM_134325	human	genbank	54_36p	-1	reviewed	missense	c.2212	p.Q738K	0.544	NULL	HMMPfam_Sulfate_transp,superfamily_STAS,HMMPfam_STAS	-	no_errors
HJURP	55355	genome.wustl.edu	36	2	234414314	234414314	+	Silent	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	234414314	234414314	T	A	SNP	HJURP	NM_018410	human	genbank	54_36p	-1	validated	silent	c.1851	p.R617	0.000	NULL	NULL	-	no_errors
OR13H1	347468	genome.wustl.edu	36	X	130506620	130506620	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	130506620	130506620	C	T	SNP	OR13H1	NM_001004486	human	genbank	54_36p	+1	provisional	missense	c.892	p.R298W	0.967	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
BRD7P2	647076	genome.wustl.edu	36	3	161302468	161302468	+	RNA	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	161302468	161302468	T	C	SNP	BRD7P2	XR_017374	human	genbank	54_36p	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
DOCK11	139818	genome.wustl.edu	36	X	117590350	117590350	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	117590350	117590350	C	T	SNP	DOCK11	NM_144658	human	genbank	54_36p	+1	validated	missense	c.1072	p.P358S	1.000	NULL	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,HMMPfam_Ded_cyto	-	no_errors
RANBP6	26953	genome.wustl.edu	36	9	6003948	6003948	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	6003948	6003948	C	T	SNP	RANBP6	NM_012416	human	genbank	54_36p	-1	validated	missense	c.1660	p.V554I	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold,HMMPfam_HEAT	-	no_errors
PKD2L1	9033	genome.wustl.edu	36	10	102046884	102046884	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	102046884	102046884	C	T	SNP	PKD2L1	NM_016112	human	genbank	54_36p	-1	reviewed	missense	c.1028	p.R343H	1.000	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	HMMPfam_PKD_channel,superfamily_Voltage-gated potassium channels	-	no_errors
RPL27	6155	genome.wustl.edu	36	17	38404342	38404342	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	38404342	38404342	C	T	SNP	RPL27	NM_000988	human	genbank	54_36p	+1	reviewed	missense	c.49	p.R17C	1.000	HMMSmart_SM00739,HMMPfam_KOW	HMMSmart_SM00739,HMMPfam_KOW,HMMPfam_Ribosomal_L27e,PatternScan_RIBOSOMAL_L27E	-	no_errors
PSMD11	5717	genome.wustl.edu	36	17	27825916	27825916	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	27825916	27825916	G	T	SNP	PSMD11	NM_002815	human	genbank	54_36p	+1	reviewed	missense	c.810	p.L270F	1.000	superfamily_TPR-like,HMMSmart_SM00753	"superfamily_TPR-like,HMMSmart_SM00753,HMMPfam_PCI,superfamily_""Winged helix"" DNA-binding domain,HMMSmart_SM00088"	-	no_errors
KIAA1217	56243	genome.wustl.edu	36	10	24802598	24802598	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	24802598	24802598	G	A	SNP	KIAA1217	NM_019590	human	genbank	54_36p	+1	validated	missense	c.1282	p.A428T	0.889	NULL	NULL	-	no_errors
KCND2	3751	genome.wustl.edu	36	7	119702262	119702262	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	119702262	119702262	G	A	SNP	KCND2	NM_012281	human	genbank	54_36p	+1	reviewed	missense	c.340	p.A114T	0.989	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra	superfamily_POZ domain,HMMSmart_SM00225,HMMPfam_K_tetra,superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans	-	no_errors
AGGF1	55109	genome.wustl.edu	36	5	76368222	76368222	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	76368222	76368222	C	T	SNP	AGGF1	NM_018046	human	genbank	54_36p	+1	validated	missense	c.602	p.A201V	1.000	NULL	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,HMMSmart_SM00443,HMMPfam_G-patch	-	no_errors
TNRC18	84629	genome.wustl.edu	36	7	5315066	5315067	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	5315066	5315067	-	G	INS	TNRC18	NM_001080495	human	genbank	54_36p	-1	provisional	frame_shift_ins	c.4823_4822	p.L1608fs	1.000:1.000	HMMSmart_SM00439	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
POLE	5426	genome.wustl.edu	36	12	131725821	131725821	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	131725821	131725821	G	T	SNP	POLE	NM_006231	human	genbank	54_36p	-1	validated	missense	c.5515	p.R1839S	1.000	HMMPfam_DUF1744	superfamily_RNaseH_fold,HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,HMMPfam_DNA_pol_B,superfamily_SSF56672,HMMPfam_DUF1744	-	no_errors
TM7SF2	7108	genome.wustl.edu	36	11	64637426	64637426	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64637426	64637426	G	A	SNP	TM7SF2	NM_003273	human	genbank	54_36p	+1	validated	missense	c.463	p.A155T	0.947	HMMPfam_ERG4_ERG24	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1,PatternScan_STEROL_REDUCT_2	-	no_errors
DHX33	56919	genome.wustl.edu	36	17	5297701	5297701	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	5297701	5297701	G	A	SNP	DHX33	NM_020162	human	genbank	54_36p	-1	reviewed	missense	c.1319	p.A440V	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_HA2,HMMPfam_DUF1605	-	no_errors
RUSC2	9853	genome.wustl.edu	36	9	35536896	35536896	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	35536896	35536896	C	A	SNP	RUSC2	NM_014806	human	genbank	54_36p	+1	validated	silent	c.378	p.A126	0.815	NULL	HMMPfam_RUN,HMMSmart_SM00593,superfamily_SH3-domain,HMMSmart_SM00326,HMMPfam_SH3_2	-	no_errors
PSEN2	5664	genome.wustl.edu	36	1	225136298	225136298	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	225136298	225136298	G	A	SNP	PSEN2	NM_000447	human	genbank	54_36p	+1	reviewed	missense	c.67	p.A23T	0.561	NULL	HMMPfam_Presenilin,HMMSmart_SM00730	-	no_errors
NLRP14	338323	genome.wustl.edu	36	11	7037777	7037777	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	7037777	7037777	C	T	SNP	NLRP14	NM_176822	human	genbank	54_36p	+1	reviewed	missense	c.2710	p.H904Y	0.694	superfamily_SSF52047	superfamily_DEATH_like,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_SSF52047	-	no_errors
SNORD91B	692208	genome.wustl.edu	36	17	2179185	2179185	+	RNA	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	2179185	2179185	C	T	SNP	SNORD91B	NR_003073	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.474	-	-	-	no_errors
ENSG00000179954	0	genome.wustl.edu	36	19	60704244	60704244	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60704244	60704244	G	T	SNP	ENSG00000179954	ENST00000389623	human	ensembl	54_36p	+1	known	missense	c.2619	p.W873C	0.999	NULL	superfamily_Srcr_receptor,HMMSmart_SR,HMMPfam_SRCR,PatternScan_SRCR_1	-	no_stop_codon
CKMT2	1160	genome.wustl.edu	36	5	80582743	80582743	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	80582743	80582743	C	T	SNP	CKMT2	NM_001099735	human	genbank	54_36p	+1	reviewed	silent	c.36	p.R12	0.920	NULL	superfamily_ATP-gua_Ptrans,HMMPfam_ATP-gua_PtransN,superfamily_SSF55931,HMMPfam_ATP-gua_Ptrans,PatternScan_GUANIDO_KINASE	-	no_errors
GFPT2	9945	genome.wustl.edu	36	5	179664382	179664382	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	179664382	179664382	C	G	SNP	GFPT2	NM_005110	human	genbank	54_36p	-1	provisional	missense	c.1838	p.R613P	1.000	superfamily_SSF53697,HMMPfam_SIS	HMMPfam_GATase_2,superfamily_SSF56235,superfamily_SSF53697,HMMPfam_SIS	-	no_errors
ZFP3	124961	genome.wustl.edu	36	17	4936490	4936490	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	4936490	4936490	G	T	SNP	ZFP3	NM_153018	human	genbank	54_36p	+1	validated	nonsense	c.967	p.E323*	0.000	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SIN3A	25942	genome.wustl.edu	36	15	73474200	73474200	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	73474200	73474200	C	G	SNP	SIN3A	NM_015477	human	genbank	54_36p	-1	reviewed	missense	c.2151	p.W717C	1.000	NULL	superfamily_PAH,HMMPfam_PAH,HMMPfam_HDAC_interact,HMMSmart_HDAC_interact	-	no_errors
SUPT5H	6829	genome.wustl.edu	36	19	44641493	44641493	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	44641493	44641493	G	A	SNP	SUPT5H	NM_003169	human	genbank	54_36p	+1	validated	missense	c.398	p.R133Q	1.000	NULL	HMMPfam_Supt5,HMMSmart_SM00738,HMMSmart_SM00739,superfamily_Translation proteins SH3-like domain,HMMPfam_KOW	-	no_errors
SYTL2	54843	genome.wustl.edu	36	11	85099856	85099856	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	85099856	85099856	G	A	SNP	SYTL2	NM_206927	human	genbank	54_36p	-1	reviewed	missense	c.2792	p.P931L	0.999	NULL	PatternScan_PHOSPHOPANTETHEINE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
AHNAK	79026	genome.wustl.edu	36	11	62046532	62046532	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	62046532	62046532	T	C	SNP	AHNAK	NM_001620	human	genbank	54_36p	-1	validated	missense	c.11933	p.E3978G	1.000	NULL	superfamily_PDZ,HMMPfam_PDZ,HMMSmart_PDZ,HMMPfam_CheC	-	no_errors
SYVN1	84447	genome.wustl.edu	36	11	64655230	64655230	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64655230	64655230	G	A	SNP	SYVN1	NM_172230	human	genbank	54_36p	-1	reviewed	missense	c.773	p.A258V	1.000	NULL	superfamily_RING/U-box,HMMSmart_SM00184,HMMPfam_zf-C3HC4	-	no_errors
SCRIB	23513	genome.wustl.edu	36	8	144963727	144963727	+	Silent	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	144963727	144963727	G	C	SNP	SCRIB	NM_182706	human	genbank	54_36p	-1	validated	silent	c.1680	p.A560	0.044	NULL	superfamily_RNI-like,HMMSmart_SM00364,HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_PDZ domain-like,HMMPfam_PDZ,HMMSmart_SM00228	-	no_errors
SMEK1	55671	genome.wustl.edu	36	14	91006957	91006957	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	91006957	91006957	G	C	SNP	SMEK1	NM_032560	human	genbank	54_36p	-1	validated	missense	c.1598	p.S533W	1.000	superfamily_ARM-type_fold	superfamily_SSF50729,HMMPfam_DUF625,superfamily_ARM-type_fold	-	no_errors
GPR137	56834	genome.wustl.edu	36	11	63812465	63812465	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	63812465	63812465	C	T	SNP	GPR137	NM_020155	human	genbank	54_36p	+1	provisional	silent	c.861	p.P287	1.000	NULL	NULL	-	no_errors
NTN4	59277	genome.wustl.edu	36	12	94631136	94631136	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	94631136	94631136	G	T	SNP	NTN4	NM_021229	human	genbank	54_36p	-1	validated	missense	c.976	p.P326T	0.976	HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin	HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_LAM_1,superfamily_TIMP-like,HMMSmart_SM00643,HMMPfam_NTR	-	no_errors
PMF1	11243	genome.wustl.edu	36	1	154472738	154472738	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154472738	154472738	G	A	SNP	PMF1	NM_007221	human	genbank	54_36p	+1	validated	missense	c.404	p.S135N	0.146	HMMPfam_Nnf1	HMMPfam_Nnf1	-	no_errors
SDK1	221935	genome.wustl.edu	36	7	4119451	4119451	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	4119451	4119451	C	T	SNP	SDK1	NM_152744	human	genbank	54_36p	+1	validated	nonsense	c.3439	p.R1147*	0.998	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
THOC1	9984	genome.wustl.edu	36	18	204730	204730	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	204730	204730	C	A	SNP	THOC1	NM_005131	human	genbank	54_36p	-1	validated	nonsense	c.1870	p.E624*	1.000	superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	superfamily_DEATH_like,HMMSmart_DEATH,HMMPfam_Death	-	no_errors
EPHA4	2043	genome.wustl.edu	36	2	222137313	222137313	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	222137313	222137313	T	C	SNP	EPHA4	NM_004438	human	genbank	54_36p	-1	reviewed	missense	c.205	p.T69A	1.000	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd	superfamily_Gal_bind_like,HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,superfamily_FN_III-like,HMMPfam_fn3,HMMSmart_FN3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_2	-	no_errors
GPR156	165829	genome.wustl.edu	36	3	121369894	121369894	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	121369894	121369894	C	A	SNP	GPR156	NM_153002	human	genbank	54_36p	-1	provisional	nonsense	c.1120	p.E374*	1.000	NULL	HMMPfam_7tm_3,PatternScan_PEROXIDASE_1	-	no_errors
G6PC3	92579	genome.wustl.edu	36	17	39508607	39508607	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	39508607	39508607	G	A	SNP	G6PC3	NM_138387	human	genbank	54_36p	+1	validated	silent	c.711	p.R237	0.973	NULL	superfamily_AcPase_VanPerase,HMMSmart_acidPPc,HMMPfam_PAP2	-	no_errors
DNAJC24	120526	genome.wustl.edu	36	11	31348929	31348929	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	31348929	31348929	C	A	SNP	DNAJC24	NM_181706	human	genbank	54_36p	+1	validated	missense	c.58	p.P20T	1.000	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ	superfamily_Chaperone J-domain,HMMSmart_SM00271,HMMPfam_DnaJ,HMMPfam_zf-CSL	-	no_errors
PEX16	9409	genome.wustl.edu	36	11	45893954	45893954	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	45893954	45893954	G	A	SNP	PEX16	NM_057174	human	genbank	54_36p	-1	reviewed	nonsense	c.235	p.Q79*	1.000	HMMPfam_Pex16	HMMPfam_Pex16	-	no_errors
GIMAP4	55303	genome.wustl.edu	36	7	149900481	149900481	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	149900481	149900481	G	A	SNP	GIMAP4	NM_018326	human	genbank	54_36p	+1	reviewed	silent	c.390	p.E130	0.061	superfamily_SSF52540,HMMPfam_AIG1	superfamily_SSF52540,HMMPfam_AIG1	-	no_errors
LOC649352	649352	genome.wustl.edu	36	8	12281990	12281990	+	RNA	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	12281990	12281990	C	T	SNP	LOC649352	XR_042361	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.744	-	-	-	pseudogene
FAM194A	131831	genome.wustl.edu	36	3	151860602	151860602	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	151860602	151860602	G	T	SNP	C3orf44	NM_152394	human	genbank	54_36p	-1	validated	silent	c.1759	p.R587	0.000	NULL	NULL	-	no_errors
VPS26B	112936	genome.wustl.edu	36	11	133610111	133610111	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	133610111	133610111	G	A	SNP	VPS26B	NM_052875	human	genbank	54_36p	+1	validated	missense	c.334	p.V112M	1.000	HMMPfam_Vps26	HMMPfam_Vps26	-	no_errors
PFKP	5214	genome.wustl.edu	36	10	3165398	3165398	+	Silent	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	3165398	3165398	T	C	SNP	PFKP	NM_002627	human	genbank	54_36p	+1	validated	silent	c.1914	p.N638	0.981	superfamily_Phosphofructokinase,HMMPfam_PFK	HMMPfam_PFK,superfamily_Phosphofructokinase,PatternScan_PHOSPHOFRUCTOKINASE	-	no_errors
ENSG00000199879	0	genome.wustl.edu	36	1	146202470	146202470	+	RNA	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	146202470	146202470	T	C	SNP	ENSG00000199879	ENST00000363009	human	ensembl	54_36p	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
CDKN2D	1032	genome.wustl.edu	36	19	10538948	10538948	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10538948	10538948	T	G	SNP	CDKN2D	NM_001800	human	genbank	54_36p	-1	reviewed	missense	c.287	p.H96P	1.000	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
NUCB2	4925	genome.wustl.edu	36	11	17287729	17287729	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	17287729	17287729	A	T	SNP	NUCB2	NM_005013	human	genbank	54_36p	+1	validated	missense	c.414	p.Q138H	1.000	NULL	superfamily_EF-hand,HMMSmart_SM00054,PatternScan_EF_HAND_1	-	no_errors
KRT4	3851	genome.wustl.edu	36	12	51494001	51494001	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	51494001	51494001	C	A	SNP	KRT4	NM_002272	human	genbank	54_36p	-1	reviewed	nonsense	c.331	p.G111*	0.963	NULL	HMMPfam_Filament,superfamily_Prefoldin,PatternScan_IF	-	no_errors
SPTBN1	6711	genome.wustl.edu	36	2	54712081	54712081	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	54712081	54712081	G	A	SNP	SPTBN1	NM_003128	human	genbank	54_36p	+1	reviewed	silent	c.3393	p.G1131	0.900	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
UBA1	7317	genome.wustl.edu	36	X	46948007	46948007	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	46948007	46948007	C	T	SNP	UBA1	NM_003334	human	genbank	54_36p	+1	reviewed	nonsense	c.1543	p.R515*	1.000	HMMPfam_ThiF,superfamily_MoeB	HMMPfam_UBACT,HMMPfam_ThiF,superfamily_MoeB,PatternScan_UBIQUITIN_ACTIVAT_1,PatternScan_UBIQUITIN_ACTIVAT_2,HMMPfam_UBA_e1_C,HMMPfam_UBA_e1_thiolCys	-	no_errors
CCNA1	8900	genome.wustl.edu	36	13	35910267	35910267	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	13	35910267	35910267	C	T	SNP	CCNA1	NM_003914	human	genbank	54_36p	+1	reviewed	missense	c.608	p.T203I	0.776	NULL	superfamily_Cyclin-like,HMMPfam_Cyclin_N,PatternScan_CYCLINS,HMMSmart_SM00385,HMMPfam_Cyclin_C	-	no_errors
KDM6A	7403	genome.wustl.edu	36	X	44803458	44803458	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	44803458	44803458	C	A	SNP	UTX	NM_021140	human	genbank	54_36p	+1	validated	missense	c.997	p.Q333K	1.000	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR	superfamily_SSF48452,HMMPfam_TPR_1,HMMSmart_TPR,HMMSmart_JmjC,HMMPfam_JmjC	-	no_errors
PDZD2	23037	genome.wustl.edu	36	5	32123837	32123837	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	32123837	32123837	C	A	SNP	PDZD2	NM_178140	human	genbank	54_36p	+1	reviewed	missense	c.4526	p.P1509H	0.114	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ZNF285B	147711	genome.wustl.edu	36	19	49669212	49669212	+	RNA	SNP	A	A	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	49669212	49669212	A	T	SNP	ZNF285B	XR_016906	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.026	-	-	-	pseudogene
FAM161B	145483	genome.wustl.edu	36	14	73480881	73480881	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	73480881	73480881	C	T	SNP	FAM161B	NM_152445	human	genbank	54_36p	-1	predicted	missense	c.835	p.A279T	0.002	HMMPfam_UPF0564	HMMPfam_UPF0564	-	no_errors
LINGO1	84894	genome.wustl.edu	36	15	75694976	75694976	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	75694976	75694976	C	A	SNP	LINGO1	NM_032808	human	genbank	54_36p	-1	validated	missense	c.328	p.V110L	1.000	superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1	HMMPfam_LRRNT,HMMSmart_SM00013,superfamily_L domain-like,HMMSmart_SM00369,HMMPfam_LRR_1,superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408	-	no_errors
SHARPIN	81858	genome.wustl.edu	36	8	145225765	145225765	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	145225765	145225765	G	A	SNP	SHARPIN	ENST00000321205	human	ensembl	54_36p	-1	known	silent	c.1164	p.S388	0.015	NULL	superfamily_Ubiquitin-like	-	no_errors
NLGN2	57555	genome.wustl.edu	36	17	7260110	7260110	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7260110	7260110	G	T	SNP	NLGN2	NM_020795	human	genbank	54_36p	+1	reviewed	missense	c.1594	p.A532S	1.000	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,superfamily_SSF53474,PatternScan_CARBOXYLESTERASE_B_2	-	no_errors
USH2A	7399	genome.wustl.edu	36	1	213868828	213868828	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	213868828	213868828	A	G	SNP	USH2A	NM_206933	human	genbank	54_36p	-1	reviewed	missense	c.15470	p.L5157S	0.006	NULL	superfamily_Concanavalin A-like lectins/glucanases,HMMSmart_SM00560,HMMSmart_SM00136,HMMPfam_Laminin_N,HMMPfam_Laminin_EGF,HMMSmart_SM00180,superfamily_EGF/Laminin,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00282,HMMPfam_Laminin_G_2	-	no_errors
SLC7A8	23428	genome.wustl.edu	36	14	22667149	22667149	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22667149	22667149	C	G	SNP	SLC7A8	NM_012244	human	genbank	54_36p	-1	validated	missense	c.1360	p.A454P	1.000	NULL	HMMPfam_AA_permease	-	no_errors
NUDT3	11165	genome.wustl.edu	36	6	34364636	34364636	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	34364636	34364636	A	T	SNP	NUDT3	NM_006703	human	genbank	54_36p	-1	validated	missense	c.391	p.Y131N	0.997	superfamily_Nudix,HMMPfam_NUDIX	superfamily_Nudix,HMMPfam_NUDIX,PatternScan_NUDIX	-	no_errors
DCST2	127579	genome.wustl.edu	36	1	153272706	153272706	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153272706	153272706	C	A	SNP	DCST2	NM_144622	human	genbank	54_36p	-1	validated	silent	c.96	p.L32	0.979	NULL	HMMPfam_DC_STAMP	-	no_errors
POU5F1	5460	genome.wustl.edu	36	6	31241714	31241714	+	Silent	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	31241714	31241714	G	C	SNP	POU5F1	NM_002701	human	genbank	54_36p	-1	validated	silent	c.495	p.A165	0.960	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,superfamily_lambda repressor-like DNA-binding domains	HMMPfam_Pou,HMMSmart_SM00352,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,superfamily_lambda repressor-like DNA-binding domains,PatternScan_HOMEOBOX_1	-	no_errors
ATG2A	23130	genome.wustl.edu	36	11	64436258	64436258	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	64436258	64436258	G	A	SNP	ATG2A	NM_015104	human	genbank	54_36p	-1	provisional	missense	c.962	p.P321L	0.995	NULL	PatternScan_OX2_COVAL_FAD,HMMPfam_ATG_C,PatternScan_ADH_ZINC	-	no_errors
PEX6	5190	genome.wustl.edu	36	6	43040079	43040079	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43040079	43040079	C	T	SNP	PEX6	NM_000287	human	genbank	54_36p	-1	reviewed	missense	c.2915	p.R972H	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
FCRL2	79368	genome.wustl.edu	36	1	156006378	156006378	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	156006378	156006378	G	T	SNP	FCRL2	NM_030764	human	genbank	54_36p	-1	provisional	missense	c.497	p.A166D	0.003	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	superfamily_Immunoglobulin,HMMPfam_V-set,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
LOC643962	643962	genome.wustl.edu	36	6	87703917	87703918	+	RNA	INS	-	-	CTC			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	-	-			-	-	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	87703917	87703918	-	CTC	INS	LOC643962	XR_041993	human	genbank	54_36p	-1	model	rna	NULL	NULL	0.086:0.263	-	-	-	no_errors
SIRT1	23411	genome.wustl.edu	36	10	69317245	69317245	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	69317245	69317245	G	T	SNP	SIRT1	NM_012238	human	genbank	54_36p	+1	validated	missense	c.495	p.E165D	1.000	NULL	superfamily_SSF52467,HMMPfam_SIR2	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65028930	65028930	+	RNA	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65028930	65028930	C	A	SNP	MALAT1	NR_002819	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.901	-	-	-	no_errors
CEACAM5	1048	genome.wustl.edu	36	19	46916784	46916784	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	46916784	46916784	A	G	SNP	CEACAM5	NM_004363	human	genbank	54_36p	+1	validated	missense	c.1874	p.Y625C	0.971	superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	HMMPfam_V-set,superfamily_Immunoglobulin,HMMSmart_SM00409,HMMSmart_SM00408,HMMPfam_ig	-	no_errors
PHC1	1911	genome.wustl.edu	36	12	8980809	8980809	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	8980809	8980809	C	A	SNP	PHC1	NM_004426	human	genbank	54_36p	+1	reviewed	missense	c.2459	p.S820Y	1.000	HMMPfam_zf-FCS	HMMPfam_zf-FCS,superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1	-	no_errors
NUP210L	91181	genome.wustl.edu	36	1	152293443	152293443	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152293443	152293443	A	G	SNP	NUP210L	NM_207308	human	genbank	54_36p	-1	validated	missense	c.3368	p.V1123A	0.965	HMMSmart_BID_2,HMMPfam_Big_2	superfamily_Invasin_intimin,HMMSmart_BID_2,HMMPfam_Big_2	-	no_errors
MRC1	4360	genome.wustl.edu	36	10	18162796	18162796	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	18162796	18162796	C	T	SNP	MRC1	NM_002438	human	genbank	54_36p	+1	validated	missense	c.800	p.T267I	1.000	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C	superfamily_Ricin B-like lectins,HMMSmart_SM00458,HMMPfam_Ricin_B_lectin,superfamily_Kringle-like,HMMSmart_SM00059,HMMPfam_fn2,PatternScan_FN2_1,superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
PGD	5226	genome.wustl.edu	36	1	10383116	10383116	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	10383116	10383116	C	T	SNP	PGD	NM_002631	human	genbank	54_36p	+1	reviewed	missense	c.164	p.A55V	0.998	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_NAD_binding_2,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_6-phosphogluconate dehydrogenase C-terminal domain-like,HMMPfam_6PGD,PatternScan_6PGD	-	no_errors
MTMR1	8776	genome.wustl.edu	36	X	149651750	149651750	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	149651750	149651750	C	T	SNP	MTMR1	NM_003828	human	genbank	54_36p	+1	reviewed	missense	c.946	p.R316C	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related	HMMSmart_SM00568,superfamily_PH domain-like,HMMPfam_GRAM,superfamily_(Phosphotyrosine protein) phosphatases II,HMMPfam_Myotub-related,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
EGR3	1960	genome.wustl.edu	36	8	22604801	22604801	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	22604801	22604801	G	A	SNP	EGR3	NM_004430	human	genbank	54_36p	-1	reviewed	silent	c.294	p.C98	0.998	NULL	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
PDZD2	23037	genome.wustl.edu	36	5	32123534	32123534	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	32123534	32123534	G	A	SNP	PDZD2	NM_178140	human	genbank	54_36p	+1	reviewed	missense	c.4223	p.G1408D	0.000	NULL	superfamily_PDZ domain-like,HMMSmart_SM00228,HMMPfam_PDZ,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
VTN	7448	genome.wustl.edu	36	17	23720071	23720071	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	23720071	23720071	C	T	SNP	VTN	NM_000638	human	genbank	54_36p	-1	reviewed	missense	c.775	p.A259T	1.000	superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX	HMMSmart_SO,HMMPfam_Somatomedin_B,superfamily_SSF90188,PatternScan_SMB_1,superfamily_Hemopexin,HMMPfam_Hemopexin,HMMSmart_HX,PatternScan_HEMOPEXIN	-	no_errors
SPATA5	166378	genome.wustl.edu	36	4	124087966	124087966	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	124087966	124087966	G	A	SNP	SPATA5	NM_145207	human	genbank	54_36p	+1	validated	silent	c.1587	p.R529	0.551	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMPfam_AAA	superfamily_ADC-like,superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA	-	no_errors
GJA4	2701	genome.wustl.edu	36	1	35032757	35032757	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	35032757	35032757	A	G	SNP	GJA4	NM_002060	human	genbank	54_36p	+1	reviewed	missense	c.356	p.K119R	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_SM00037,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
RUVBL2	10856	genome.wustl.edu	36	19	54202420	54202420	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54202420	54202420	C	T	SNP	RUVBL2	NM_006666	human	genbank	54_36p	+1	reviewed	nonsense	c.445	p.R149*	0.990	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_TIP49	superfamily_SSF52540,HMMSmart_AAA,HMMPfam_AAA,HMMPfam_TIP49	-	no_errors
L3MBTL1	26013	genome.wustl.edu	36	20	41592351	41592351	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	41592351	41592351	G	A	SNP	L3MBTL	NM_015478	human	genbank	54_36p	+1	reviewed	missense	c.800	p.R267H	1.000	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT	superfamily_Tudor/PWWP/MBT,HMMSmart_SM00561,HMMPfam_MBT,superfamily_CCHHC domain,HMMPfam_zf-C2HC	-	no_errors
CGB7	94027	genome.wustl.edu	36	19	54250059	54250059	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54250059	54250059	G	A	SNP	CGB7	ENST00000377280	human	ensembl	54_36p	-1	known	missense	c.17	p.A6V	0.992	NULL	NULL	-	no_start_codon
MOCOS	55034	genome.wustl.edu	36	18	32034072	32034072	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	32034072	32034072	T	A	SNP	MOCOS	NM_017947	human	genbank	54_36p	+1	validated	missense	c.728	p.V243E	0.997	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_5,superfamily_PK beta-barrel domain-like,HMMPfam_MOSC_N,HMMPfam_MOSC	-	no_errors
KIAA1797	54914	genome.wustl.edu	36	9	20966491	20966491	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	20966491	20966491	A	G	SNP	KIAA1797	NM_017794	human	genbank	54_36p	+1	validated	missense	c.4205	p.Q1402R	1.000	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
GHR	2690	genome.wustl.edu	36	5	42754939	42754939	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	42754939	42754939	C	A	SNP	GHR	NM_000163	human	genbank	54_36p	+1	reviewed	missense	c.1573	p.Q525K	0.860	NULL	superfamily_Fibronectin type III,HMMPfam_fn3,PatternScan_HEMATOPO_REC_L_F1	-	no_errors
SUV420H2	84787	genome.wustl.edu	36	19	60545950	60545950	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60545950	60545950	C	T	SNP	SUV420H2	NM_032701	human	genbank	54_36p	+1	validated	missense	c.305	p.P102L	0.443	superfamily_SET domain	superfamily_SET domain,HMMSmart_SM00317,HMMPfam_SET	-	no_errors
CTCF	10664	genome.wustl.edu	36	16	66202321	66202321	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	66202321	66202321	C	A	SNP	CTCF	NM_006565	human	genbank	54_36p	+1	reviewed	silent	c.85	p.R29	1.000	NULL	HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
EGF	1950	genome.wustl.edu	36	4	111151814	111151814	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	111151814	111151814	G	A	SNP	EGF	NM_001963	human	genbank	54_36p	+1	reviewed	missense	c.3378	p.M1126I	0.001	NULL	superfamily_SSF63825,HMMSmart_LY,HMMPfam_Ldl_recept_b,superfamily_SSF57196,HMMSmart_EGF,HMMPfam_EGF,PatternScan_EGF_2,PatternScan_EGF_CA,HMMPfam_EGF_CA,HMMSmart_EGF_CA,PatternScan_ASX_HYDROXYL,PatternScan_EGF_1	-	no_errors
IFITM3	10410	genome.wustl.edu	36	11	310625	310625	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	310625	310625	G	A	SNP	IFITM3	ENST00000270031	human	ensembl	54_36p	-1	known	nonsense	c.139	p.Q47*	1.000	HMMPfam_CD225	HMMPfam_CD225	-	no_start_codon:no_stop_codon
OPRM1	4988	genome.wustl.edu	36	6	154452709	154452709	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	154452709	154452709	G	T	SNP	OPRM1	NM_001008505	human	genbank	54_36p	+1	validated	missense	c.346	p.D116Y	1.000	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
SLC39A10	57181	genome.wustl.edu	36	2	196253238	196253238	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	196253238	196253238	G	T	SNP	SLC39A10	NM_020342	human	genbank	54_36p	+1	validated	missense	c.227	p.R76I	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMPfam_Zip	-	no_errors
IQGAP3	128239	genome.wustl.edu	36	1	154799974	154799974	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154799974	154799974	G	A	SNP	IQGAP3	NM_178229	human	genbank	54_36p	-1	validated	missense	c.614	p.A205V	1.000	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RasGAP_C,HMMPfam_CH,HMMSmart_CH,HMMPfam_RasGAP,HMMSmart_RasGAP,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_Rho_GAP,superfamily_Calponin-homology,superfamily_SSF52540	-	no_errors
PTPRH	5794	genome.wustl.edu	36	19	60385061	60385061	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60385061	60385061	T	A	SNP	PTPRH	NM_002842	human	genbank	54_36p	-1	reviewed	missense	c.3221	p.Q1074L	1.000	superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404	HMMPfam_fn3,superfamily_Fibronectin type III,HMMSmart_SM00060,superfamily_(Phosphotyrosine protein) phosphatases II,HMMSmart_SM00194,HMMPfam_Y_phosphatase,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
ALAS2	212	genome.wustl.edu	36	X	55058767	55058767	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	55058767	55058767	C	T	SNP	ALAS2	NM_000032	human	genbank	54_36p	-1	reviewed	missense	c.1137	p.M379I	1.000	superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2	HMMPfam_Preseq_ALAS,superfamily_PLP-dependent transferases,HMMPfam_Aminotran_1_2,PatternScan_AA_TRANSFER_CLASS_2	-	no_errors
TDRD6	221400	genome.wustl.edu	36	6	46764985	46764985	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	46764985	46764985	C	A	SNP	TDRD6	NM_001010870	human	genbank	54_36p	+1	provisional	silent	c.1161	p.G387	1.000	NULL	HMMSmart_TUDOR,HMMPfam_TUDOR,superfamily_SSF63748	-	no_errors
MAGEB6P1	392433	genome.wustl.edu	36	X	26088958	26088958	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	26088958	26088958	A	G	SNP	MAGEB6B	XM_373340	human	genbank	54_36p	+1	model	missense	c.320	p.Q107R	0.000	NULL	HMMPfam_MAGE	-	pseudogene
TBC1D3P2	440452	genome.wustl.edu	36	17	57703076	57703076	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	57703076	57703076	C	T	SNP	TBC1D3P2	ENST00000339120	human	ensembl	54_36p	-1	known	missense	c.481	p.D161N	1.000	superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC	superfamily_RabGAP_TBC,HMMPfam_TBC,HMMSmart_TBC	-	no_errors
DNAH3	55567	genome.wustl.edu	36	16	20949878	20949878	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	20949878	20949878	T	C	SNP	DNAH3	NM_017539	human	genbank	54_36p	-1	provisional	missense	c.5429	p.D1810G	1.000	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
FOXM1	2305	genome.wustl.edu	36	12	2847995	2847995	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	2847995	2847995	A	G	SNP	FOXM1	NM_202002	human	genbank	54_36p	-1	validated	missense	c.841	p.W281R	1.000	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	"HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain,PatternScan_FORK_HEAD_1,HMMPfam_Fork_head,PatternScan_FORK_HEAD_2"	-	no_errors
TNXB	7148	genome.wustl.edu	36	6	32154924	32154924	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	32154924	32154924	G	T	SNP	TNXB	NM_019105	human	genbank	54_36p	-1	reviewed	silent	c.4500	p.P1500	0.992	HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_fn3	superfamily_EGF/Laminin,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00181,HMMPfam_EGF_2,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3,HMMSmart_SM00186,HMMPfam_Fibrinogen_C,superfamily_Fibrinogen C-terminal domain-like,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
FAM123B	139285	genome.wustl.edu	36	X	63327461	63327461	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	63327461	63327461	T	C	SNP	FAM123B	NM_152424	human	genbank	54_36p	-1	validated	missense	c.2431	p.I811V	1.000	NULL	HMMPfam_WTX	-	no_errors
ACCS	84680	genome.wustl.edu	36	11	44051602	44051602	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	44051602	44051602	G	T	SNP	ACCS	NM_032592	human	genbank	54_36p	+1	validated	missense	c.378	p.E126D	1.000	superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2	PatternScan_AA_TRANSFER_CLASS_1,superfamily_PyrdxlP-dep_Trfase_major,HMMPfam_Aminotran_1_2	-	no_errors
MDC1	9656	genome.wustl.edu	36	6	30789676	30789676	+	Frame_Shift_Del	DEL	C	C	-			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30789676	30789676	C	-	DEL	MDC1	NM_014641	human	genbank	54_36p	-1	reviewed	frame_shift_del	c.400	p.D134fs	0.135	superfamily_SMAD/FHA domain	superfamily_SMAD/FHA domain,HMMSmart_SM00240,HMMPfam_FHA,superfamily_BRCT domain,HMMPfam_BRCT	-	no_errors
TIE1	7075	genome.wustl.edu	36	1	43545407	43545407	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	43545407	43545407	G	A	SNP	TIE1	NM_005424	human	genbank	54_36p	+1	provisional	silent	c.648	p.G216	0.994	NULL	superfamily_SSF48726,HMMSmart_IG,HMMPfam_ig,HMMSmart_EGF,HMMPfam_Laminin_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196,HMMPfam_EGF_2,superfamily_FN_III-like,HMMSmart_FN3,HMMPfam_fn3,superfamily_Kinase_like,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
SYN3	8224	genome.wustl.edu	36	22	31244253	31244253	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	31244253	31244253	G	A	SNP	SYN3	NM_003490	human	genbank	54_36p	-1	reviewed	missense	c.1387	p.P463S	1.000	NULL	HMMPfam_Synapsin_N,PatternScan_SYNAPSIN_1,HMMPfam_Synapsin,superfamily_PreATP-grasp domain,superfamily_Glutathione synthetase ATP-binding domain-like,HMMPfam_Synapsin_C,PatternScan_SYNAPSIN_2	-	no_errors
CDH22	64405	genome.wustl.edu	36	20	44303283	44303283	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	44303283	44303283	C	T	SNP	CDH22	NM_021248	human	genbank	54_36p	-1	reviewed	silent	c.276	p.E92	0.997	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
ADAM19	8728	genome.wustl.edu	36	5	156923987	156923987	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	156923987	156923987	C	A	SNP	ADAM19	NM_033274	human	genbank	54_36p	-1	reviewed	nonsense	c.223	p.E75*	0.992	HMMPfam_Pep_M12B_propep	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ENSG00000189196	0	genome.wustl.edu	36	3	64047874	64047874	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	64047874	64047874	G	T	SNP	ENSG00000189196	ENST00000339674	human	ensembl	54_36p	-1	known	missense	c.91	p.L31I	0.000	NULL	NULL	-	no_errors
MYH6	4624	genome.wustl.edu	36	14	22944774	22944774	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	22944774	22944774	T	C	SNP	MYH6	NM_002471	human	genbank	54_36p	-1	validated	missense	c.247	p.K83E	1.000	HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDH8	1006	genome.wustl.edu	36	16	60245046	60245046	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	60245046	60245046	G	A	SNP	CDH8	NM_001796	human	genbank	54_36p	-1	reviewed	silent	c.2367	p.L789	1.000	HMMPfam_Cadherin_C	superfamily_Cadherin,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_C	-	no_errors
ENPP6	133121	genome.wustl.edu	36	4	185311761	185311761	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	185311761	185311761	C	A	SNP	ENPP6	NM_153343	human	genbank	54_36p	-1	validated	nonsense	c.361	p.E121*	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core	-	no_errors
LYPLA2	11313	genome.wustl.edu	36	1	23993532	23993532	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	23993532	23993532	C	T	SNP	LYPLA2	NM_007260	human	genbank	54_36p	+1	reviewed	missense	c.500	p.A167V	0.995	superfamily_SSF53474,HMMPfam_Abhydrolase_2	superfamily_SSF53474,HMMPfam_Abhydrolase_2	-	no_errors
PLEKHA6	22874	genome.wustl.edu	36	1	202486296	202486296	+	Splice_Site	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	202486296	202486296	C	A	SNP	PLEKHA6	NM_014935	human	genbank	54_36p	-1	validated	splice_site	c.1593+1	e8+1	1.000	-	-	-	no_errors
DOPEY2	9980	genome.wustl.edu	36	21	36531549	36531549	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	36531549	36531549	C	A	SNP	DOPEY2	NM_005128	human	genbank	54_36p	+1	validated	missense	c.2742	p.D914E	1.000	NULL	HMMPfam_Dopey_N	-	no_errors
NPY6R	4888	genome.wustl.edu	36	5	137171986	137171986	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	137171986	137171986	A	T	SNP	NPY6R	ENST00000290426	human	ensembl	54_36p	+1	known	missense	c.188	p.K63M	0.983	superfamily_SSF81321,HMMPfam_7tm_1	superfamily_SSF81321,HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1	-	no_errors
MFAP4	4239	genome.wustl.edu	36	17	19229296	19229296	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	19229296	19229296	C	T	SNP	MFAP4	NM_002404	human	genbank	54_36p	-1	reviewed	missense	c.305	p.G102D	1.000	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like	-	no_errors
FLG	2312	genome.wustl.edu	36	1	150542647	150542647	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150542647	150542647	C	A	SNP	FLG	NM_002016	human	genbank	54_36p	-1	provisional	missense	c.11339	p.R3780M	0.006	NULL	superfamily_SSF47473,HMMPfam_S_100,PatternScan_S100_CABP,PatternScan_EF_HAND_1,HMMPfam_Filaggrin	-	no_errors
LOC728673	728673	genome.wustl.edu	36	9	66295531	66295531	+	RNA	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	66295531	66295531	G	A	SNP	LOC728673	XR_042099	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.000	-	-	-	no_errors
SPTBN2	6712	genome.wustl.edu	36	11	66225730	66225730	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	66225730	66225730	G	A	SNP	SPTBN2	NM_006946	human	genbank	54_36p	-1	validated	missense	c.2717	p.A906V	0.221	superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,PatternScan_ACTININ_1,HMMSmart_SM00033,PatternScan_ACTININ_2,superfamily_Spectrin repeat,HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233	-	no_errors
GPR64	10149	genome.wustl.edu	36	X	18941936	18941936	+	Silent	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	18941936	18941936	T	A	SNP	GPR64	NM_001079858	human	genbank	54_36p	-1	validated	silent	c.888	p.I296	0.000	NULL	HMMPfam_GPS,HMMSmart_SM00303,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
ZNF132	7691	genome.wustl.edu	36	19	63637111	63637111	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	63637111	63637111	C	G	SNP	ZNF132	NM_003433	human	genbank	54_36p	-1	validated	missense	c.1512	p.Q504H	0.004	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CHM	1121	genome.wustl.edu	36	X	85105482	85105482	+	Silent	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	85105482	85105482	A	G	SNP	CHM	NM_000390	human	genbank	54_36p	-1	reviewed	silent	c.546	p.C182	0.274	superfamily_SSF51905,HMMPfam_GDI	superfamily_SSF51905,HMMPfam_GDI,superfamily_SSF54373	-	no_errors
MOCS3	27304	genome.wustl.edu	36	20	49008868	49008868	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	49008868	49008868	C	T	SNP	MOCS3	NM_014484	human	genbank	54_36p	+1	reviewed	silent	c.82	p.L28	0.531	NULL	superfamily_MoeB,HMMPfam_ThiF,HMMPfam_MoeZ_MoeB,superfamily_Rhodanese-like,HMMPfam_Rhodanese,HMMSmart_RHOD	-	no_errors
MEPCE	56257	genome.wustl.edu	36	7	99866334	99866334	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	99866334	99866334	G	A	SNP	MEPCE	NM_019606	human	genbank	54_36p	+1	provisional	missense	c.757	p.A253T	1.000	NULL	superfamily_SSF53335,HMMPfam_Bin3	-	no_errors
ADSSL1	122622	genome.wustl.edu	36	14	104283641	104283641	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	104283641	104283641	G	A	SNP	ADSSL1	NM_199165	human	genbank	54_36p	+1	validated	missense	c.1324	p.V442I	1.000	HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540	HMMSmart_Adenylsucc_synt,HMMPfam_Adenylsucc_synt,superfamily_SSF52540,PatternScan_ADENYLOSUCCIN_SYN_2	-	no_errors
MRPL43	84545	genome.wustl.edu	36	10	102736698	102736698	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	102736698	102736698	C	T	SNP	MRPL43	NM_176794	human	genbank	54_36p	-1	reviewed	missense	c.263	p.S88N	0.007	HMMPfam_L51_S25_CI-B8	HMMPfam_L51_S25_CI-B8	-	no_errors
CMIP	80790	genome.wustl.edu	36	16	80292822	80292822	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	80292822	80292822	G	T	SNP	CMIP	NM_198390	human	genbank	54_36p	+1	validated	missense	c.1710	p.Q570H	1.000	NULL	superfamily_PH domain-like,PatternScan_WD_REPEATS_1,superfamily_RNI-like	-	no_errors
ST14	6768	genome.wustl.edu	36	11	129573418	129573418	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	129573418	129573418	G	A	SNP	ST14	NM_021978	human	genbank	54_36p	+1	reviewed	missense	c.1465	p.D489N	0.810	superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_LDLa,HMMPfam_Ldl_recept_a	superfamily_SSF82671,HMMPfam_SEA,superfamily_CUB,HMMSmart_CUB,HMMPfam_CUB,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_Pept_Ser_Cys,HMMSmart_Tryp_SPc,HMMPfam_Trypsin,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CREB3L2	64764	genome.wustl.edu	36	7	137220320	137220320	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	137220320	137220320	T	A	SNP	CREB3L2	NM_194071	human	genbank	54_36p	-1	validated	missense	c.1231	p.S411C	1.000	NULL	superfamily_A DNA-binding domain in eukaryotic transcription factors,HMMPfam_bZIP_1,HMMSmart_SM00338,PatternScan_BZIP_BASIC	-	no_errors
RPGR	6103	genome.wustl.edu	36	X	38041571	38041571	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	38041571	38041571	G	T	SNP	RPGR	NM_001034853	human	genbank	54_36p	-1	reviewed	missense	c.1324	p.L442I	0.000	NULL	HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II	-	no_errors
REG3A	5068	genome.wustl.edu	36	2	79240019	79240019	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	79240019	79240019	C	T	SNP	REG3A	NM_002580	human	genbank	54_36p	-1	reviewed	silent	c.21	p.L7	0.003	NULL	superfamily_C-type lectin-like,HMMSmart_SM00034,HMMPfam_Lectin_C,PatternScan_C_TYPE_LECTIN_1	-	no_errors
XRCC6	2547	genome.wustl.edu	36	22	40389685	40389685	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	22	40389685	40389685	G	A	SNP	XRCC6	NM_001469	human	genbank	54_36p	+1	reviewed	missense	c.1750	p.A584T	0.994	superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP	superfamily_SSF53300,HMMPfam_Ku_N,superfamily_SPOC-like,HMMPfam_Ku,HMMSmart_Ku78,HMMPfam_Ku_C,superfamily_SSF68906,HMMPfam_SAP,HMMSmart_SAP	-	no_errors
CD247	919	genome.wustl.edu	36	1	165667545	165667545	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	165667545	165667545	G	A	SNP	CD247	NM_198053	human	genbank	54_36p	-1	reviewed	silent	c.492	p.R164	0.999	NULL	HMMPfam_ITAM,HMMSmart_SM00077	-	no_errors
TTN	7273	genome.wustl.edu	36	2	179161036	179161036	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	179161036	179161036	C	T	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.51287	p.G17096D	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors
C3orf18	51161	genome.wustl.edu	36	3	50573425	50573425	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	50573425	50573425	T	C	SNP	C3orf18	NM_016210	human	genbank	54_36p	-1	predicted	missense	c.335	p.Q112R	1.000	NULL	NULL	-	no_errors
PCDHGA12	26025	genome.wustl.edu	36	5	140791160	140791160	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	140791160	140791160	G	T	SNP	PCDHGA12	NM_003735	human	genbank	54_36p	+1	reviewed	missense	c.650	p.G217V	0.998	superfamily_Cadherin-like,HMMPfam_Cadherin,HMMSmart_SM00112	superfamily_Cadherin-like,HMMPfam_Cadherin_2,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin	-	no_errors
HDAC4	9759	genome.wustl.edu	36	2	239668758	239668758	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	239668758	239668758	G	T	SNP	HDAC4	NM_006037	human	genbank	54_36p	-1	reviewed	missense	c.2614	p.P872T	1.000	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	superfamily_Arginase/deacetylase,HMMPfam_Hist_deacetyl	-	no_errors
LMBR1L	55716	genome.wustl.edu	36	12	47782346	47782346	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	47782346	47782346	G	A	SNP	LMBR1L	NM_018113	human	genbank	54_36p	-1	validated	silent	c.850	p.L284	0.997	HMMPfam_LMBR1	HMMPfam_LMBR1	-	no_errors
C2CD3	26005	genome.wustl.edu	36	11	73466821	73466821	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	73466821	73466821	C	T	SNP	C2CD3	NM_015531	human	genbank	54_36p	-1	validated	silent	c.4590	p.T1530	0.012	NULL	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_C2	-	no_errors
C12orf51	283450	genome.wustl.edu	36	12	111122862	111122862	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	111122862	111122862	G	A	SNP	C12orf51	NM_001109662	human	genbank	54_36p	-1	validated	silent	c.7264	p.L2422	1.000	NULL	superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00119,HMMPfam_HECT	-	no_errors
AVIL	10677	genome.wustl.edu	36	12	56487489	56487489	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	56487489	56487489	C	T	SNP	AVIL	NM_006576	human	genbank	54_36p	-1	reviewed	silent	c.1383	p.V461	0.017	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin	superfamily_Actin depolymerizing proteins,HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_C-terminal gelsolin-like domain of Sec23/24,superfamily_VHP Villin headpiece domain,HMMPfam_VHP,HMMSmart_SM00153	-	no_errors
U2AF1	7307	genome.wustl.edu	36	21	43386366	43386366	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	43386366	43386366	C	G	SNP	U2AF1	NM_001025203	human	genbank	54_36p	-1	reviewed	missense	c.638	p.G213A	1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1,superfamily_SSF54928,HMMSmart_RRM,HMMPfam_RRM_1	-	no_errors
RAI1	10743	genome.wustl.edu	36	17	17637894	17637894	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	17637894	17637894	C	T	SNP	RAI1	NM_030665	human	genbank	54_36p	+1	reviewed	missense	c.907	p.L303F	1.000	NULL	HMMSmart_SM00249	-	no_errors
STON2	85439	genome.wustl.edu	36	14	80813919	80813919	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	80813919	80813919	G	A	SNP	STON2	NM_033104	human	genbank	54_36p	-1	provisional	missense	c.1489	p.H497Y	1.000	NULL	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	-	no_errors
TRMT1L	81627	genome.wustl.edu	36	1	183355816	183355816	+	Silent	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	183355816	183355816	T	C	SNP	C1orf25	NM_030934	human	genbank	54_36p	-1	reviewed	silent	c.2160	p.S720	0.190	NULL	HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_TRM	-	no_errors
KAT2A	2648	genome.wustl.edu	36	17	37525847	37525847	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	37525847	37525847	C	A	SNP	KAT2A	NM_021078	human	genbank	54_36p	-1	validated	silent	c.531	p.V177	1.000	HMMPfam_PCAF_N	HMMPfam_PCAF_N,superfamily_Acyl-CoA N-acyltransferases (Nat),HMMPfam_Acetyltransf_1,superfamily_Bromodomain,HMMSmart_SM00297,HMMPfam_Bromodomain,PatternScan_BROMODOMAIN_1	-	no_errors
NPC1	4864	genome.wustl.edu	36	18	19369601	19369601	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	19369601	19369601	C	T	SNP	NPC1	NM_000271	human	genbank	54_36p	-1	validated	missense	c.3307	p.G1103S	0.899	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
PLCE1	51196	genome.wustl.edu	36	10	95781181	95781181	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	95781181	95781181	G	T	SNP	PLCE1	NM_016341	human	genbank	54_36p	+1	validated	missense	c.388	p.A130S	0.089	NULL	superfamily_Ras GEF,HMMSmart_SM00147,HMMPfam_RasGEF,superfamily_EF-hand,HMMPfam_efhand_like,HMMSmart_SM00148,HMMPfam_PI-PLC-X,superfamily_PLC-like phosphodiesterases,HMMSmart_SM00149,HMMPfam_PI-PLC-Y,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2,HMMPfam_RA,HMMSmart_SM00314	-	no_errors
SYK	6850	genome.wustl.edu	36	9	92689905	92689905	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	92689905	92689905	C	G	SNP	SYK	NM_003177	human	genbank	54_36p	+1	validated	missense	c.1635	p.N545K	1.000	superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220	superfamily_SH2 domain,HMMSmart_SM00252,HMMPfam_SH2,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
GON4L	54856	genome.wustl.edu	36	1	153993645	153993645	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153993645	153993645	G	A	SNP	GON4L	NM_001037533	human	genbank	54_36p	-1	validated	missense	c.5347	p.R1783W	1.000	NULL	superfamily_PAH2 domain,HMMPfam_PAH,superfamily_Homeodomain-like	-	no_errors
GRIN3A	116443	genome.wustl.edu	36	9	103488714	103488714	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	103488714	103488714	C	T	SNP	GRIN3A	NM_133445	human	genbank	54_36p	-1	reviewed	missense	c.1289	p.G430E	1.000	superfamily_SSF53822	superfamily_SSF53822,superfamily_SSF53850,HMMPfam_Lig_chan-Glu_bd,HMMSmart_PBPe,HMMPfam_Lig_chan	-	no_errors
CDAN1	146059	genome.wustl.edu	36	15	40810415	40810415	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	40810415	40810415	C	G	SNP	CDAN1	NM_138477	human	genbank	54_36p	-1	validated	missense	c.2007	p.Q669H	1.000	NULL	NULL	-	no_errors
NPAT	4863	genome.wustl.edu	36	11	107565219	107565219	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	107565219	107565219	G	A	SNP	NPAT	NM_002519	human	genbank	54_36p	-1	validated	missense	c.380	p.A127V	1.000	NULL	HMMSmart_SM00667	-	no_errors
MAGEE2	139599	genome.wustl.edu	36	X	74920769	74920769	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	74920769	74920769	C	G	SNP	MAGEE2	NM_138703	human	genbank	54_36p	-1	validated	missense	c.843	p.W281C	0.999	NULL	HMMPfam_MAGE	-	no_errors
GALNTL5	168391	genome.wustl.edu	36	7	151335939	151335939	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	151335939	151335939	G	T	SNP	GALNTL5	NM_145292	human	genbank	54_36p	+1	provisional	nonsense	c.1003	p.E335*	1.000	superfamily_Nucleotide-diphospho-sugar transferases	superfamily_Nucleotide-diphospho-sugar transferases,HMMPfam_Glycos_transf_2	-	no_errors
HFE2	148738	genome.wustl.edu	36	1	144126196	144126196	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	144126196	144126196	C	A	SNP	HFE2	NM_213653	human	genbank	54_36p	+1	reviewed	missense	c.58	p.L20I	1.000	HMMPfam_RGM_N	HMMPfam_RGM_N,HMMPfam_RGM_C	-	no_errors
MRPS27	23107	genome.wustl.edu	36	5	71552551	71552551	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	71552551	71552551	G	A	SNP	MRPS27	NM_015084	human	genbank	54_36p	-1	reviewed	nonsense	c.1186	p.Q396*	0.007	HMMPfam_MRP-S27	HMMPfam_MRP-S27	-	no_errors
PSMD10	5716	genome.wustl.edu	36	X	107218721	107218721	+	Silent	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	107218721	107218721	A	G	SNP	PSMD10	NM_002814	human	genbank	54_36p	-1	reviewed	silent	c.130	p.L44	0.827	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
ARHGAP32	9743	genome.wustl.edu	36	11	128347793	128347793	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	128347793	128347793	G	A	SNP	RICS	NM_014715	human	genbank	54_36p	-1	validated	missense	c.2729	p.A910V	0.828	NULL	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
LOC390806	390806	genome.wustl.edu	36	17	59042006	59042006	+	RNA	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	59042006	59042006	T	C	SNP	LOC390806	XR_017626	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
EEF1A1	1915	genome.wustl.edu	36	6	74284661	74284661	+	Silent	SNP	A	A	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	74284661	74284661	A	C	SNP	EEF1A1	NM_001402	human	genbank	54_36p	-1	reviewed	silent	c.1077	p.P359	1.000	HMMPfam_GTP_EFTU_D3,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	HMMPfam_GTP_EFTU,PatternScan_EFACTOR_GTP,HMMPfam_GTP_EFTU_D3,HMMPfam_GTP_EFTU_D2,superfamily_Translation proteins,superfamily_EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC642635	642635	genome.wustl.edu	36	2	153985650	153985650	+	RNA	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	153985650	153985650	C	T	SNP	LOC642635	XR_016188	human	genbank	54_36p	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
HKR1	284459	genome.wustl.edu	36	19	42546341	42546341	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	42546341	42546341	G	A	SNP	HKR1	NM_181786	human	genbank	54_36p	+1	provisional	missense	c.1804	p.A602T	0.993	superfamily_C2H2 and C2HC zinc fingers	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
SMUG1	23583	genome.wustl.edu	36	12	52863971	52863971	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	52863971	52863971	C	T	SNP	SMUG1	NM_014311	human	genbank	54_36p	-1	provisional	silent	c.21	p.L7	0.002	NULL	superfamily_DNA glycosylase,HMMPfam_UDG	-	no_errors
USHBP1	83878	genome.wustl.edu	36	19	17231409	17231409	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	17231409	17231409	G	T	SNP	USHBP1	NM_031941	human	genbank	54_36p	-1	validated	silent	c.901	p.R301	0.808	HMMPfam_MCC-bdg_PDZ	HMMPfam_MCC-bdg_PDZ	-	no_errors
LOC100132243	100132243	genome.wustl.edu	36	X	9339811	9339811	+	RNA	DEL	G	G	-			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	9339811	9339811	G	-	DEL	LOC100132243	XR_037396	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.986	-	-	-	pseudogene
C20orf30	29058	genome.wustl.edu	36	20	5037986	5037986	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	5037986	5037986	C	A	SNP	C20orf30	NM_001009923	human	genbank	54_36p	-1	validated	missense	c.280	p.D94Y	1.000	HMMPfam_DUF872	HMMPfam_DUF872	-	no_errors
OR7G3	390883	genome.wustl.edu	36	19	9098509	9098509	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	9098509	9098509	G	A	SNP	OR7G3	NM_001001958	human	genbank	54_36p	-1	provisional	silent	c.118	p.L40	0.000	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PGAM1	5223	genome.wustl.edu	36	10	99182144	99182144	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	99182144	99182144	G	A	SNP	PGAM1	NM_002629	human	genbank	54_36p	+1	provisional	missense	c.638	p.G213D	1.000	superfamily_Phosphoglycerate mutase-like	superfamily_Phosphoglycerate mutase-like,HMMPfam_PGAM,PatternScan_PG_MUTASE	-	no_errors
PLD1	5337	genome.wustl.edu	36	3	172803592	172803592	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	172803592	172803592	C	A	SNP	PLD1	NM_002662	human	genbank	54_36p	-1	validated	missense	c.3195	p.E1065D	0.998	NULL	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain,superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_Phospholipase D/nuclease,HMMPfam_PLDc,HMMSmart_SM00155	-	no_errors
KHNYN	23351	genome.wustl.edu	36	14	23970866	23970866	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	23970866	23970866	C	T	SNP	KIAA0323	NM_015299	human	genbank	54_36p	+1	validated	nonsense	c.559	p.Q187*	0.996	NULL	NULL	-	no_errors
DNMT3B	1789	genome.wustl.edu	36	20	30838006	30838006	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	30838006	30838006	A	G	SNP	DNMT3B	NM_006892	human	genbank	54_36p	+1	reviewed	missense	c.344	p.E115G	0.123	NULL	superfamily_Tudor/PWWP/MBT,HMMPfam_PWWP,HMMSmart_SM00293,superfamily_FYVE/PHD zinc finger,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,HMMPfam_DNA_methylase,PatternScan_C5_MTASE_1	-	no_errors
EGFLAM	133584	genome.wustl.edu	36	5	38484195	38484195	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	38484195	38484195	G	A	SNP	EGFLAM	NM_152403	human	genbank	54_36p	+1	validated	missense	c.2500	p.G834S	1.000	superfamily_ConA_like_lec_gl	HMMSmart_LamG,HMMPfam_fn3,HMMSmart_FN3,HMMPfam_EGF,HMMSmart_EGF,superfamily_FN_III-like,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
ARHGAP35	2909	genome.wustl.edu	36	19	52183151	52183151	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	52183151	52183151	C	T	SNP	GRLF1	NM_004491	human	genbank	54_36p	+1	reviewed	nonsense	c.3892	p.Q1298*	1.000	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_FF,HMMSmart_SM00441,superfamily_GTPase activation domain GAP,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PURA	5813	genome.wustl.edu	36	5	139474803	139474803	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	139474803	139474803	C	A	SNP	PURA	NM_005859	human	genbank	54_36p	+1	reviewed	missense	c.853	p.Q285K	1.000	NULL	HMMPfam_PurA,HMMSmart_PUR	-	no_errors
CTNNA1	1495	genome.wustl.edu	36	5	138173786	138173786	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	138173786	138173786	G	T	SNP	CTNNA1	NM_001903	human	genbank	54_36p	+1	validated	silent	c.462	p.L154	1.000	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin	HMMPfam_Vinculin,superfamily_alpha-catenin/vinculin,PatternScan_VINCULIN_1	-	no_errors
EFHC2	80258	genome.wustl.edu	36	X	43973941	43973941	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	43973941	43973941	A	G	SNP	EFHC2	NM_025184	human	genbank	54_36p	-1	validated	missense	c.1649	p.L550P	0.076	superfamily_EF-hand	HMMSmart_SM00676,HMMPfam_DUF1126,superfamily_EF-hand	-	no_errors
KIR3DL1	3811	genome.wustl.edu	36	19	60021817	60021817	+	Silent	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	60021817	60021817	C	G	SNP	KIR3DL1	NM_013289	human	genbank	54_36p	+1	reviewed	silent	c.306	p.S102	0.005	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
UBAP2L	9898	genome.wustl.edu	36	1	152476128	152476128	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	152476128	152476128	T	C	SNP	UBAP2L	NM_014847	human	genbank	54_36p	+1	validated	missense	c.595	p.F199L	1.000	NULL	HMMPfam_UBA,HMMSmart_SM00165	-	no_errors
RUSC1-AS1	284618	genome.wustl.edu	36	1	153557426	153557426	+	Missense_Mutation	SNP	T	T	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	153557426	153557426	T	G	SNP	C1orf104	NM_001039517	human	genbank	54_36p	-1	predicted	missense	c.478	p.M160L	0.000	NULL	NULL	-	no_errors
USP35	57558	genome.wustl.edu	36	11	77598908	77598908	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	77598908	77598908	T	A	SNP	USP35	NM_020798	human	genbank	54_36p	+1	validated	missense	c.2359	p.S787T	1.000	superfamily_Cysteine proteinases,HMMPfam_UCH	superfamily_Cysteine proteinases,HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2	-	no_errors
LOC100130249	100130249	genome.wustl.edu	36	1	232961717	232961717	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	232961717	232961717	C	G	SNP	LOC100130249	XM_001722882	human	genbank	54_36p	-1	model	missense	c.506	p.G169A	0.000	NULL	NULL	-	no_errors
ATOH1	474	genome.wustl.edu	36	4	94969710	94969710	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	94969710	94969710	G	T	SNP	ATOH1	NM_005172	human	genbank	54_36p	+1	reviewed	missense	c.610	p.A204S	1.000	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	superfamily_HLH_basic,HMMPfam_HLH,HMMSmart_HLH	-	no_errors
CC2D1A	54862	genome.wustl.edu	36	19	13881687	13881687	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	13881687	13881687	G	A	SNP	CC2D1A	NM_017721	human	genbank	54_36p	+1	validated	missense	c.112	p.G38R	0.193	NULL	HMMSmart_SM00685,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMSmart_SM00239,HMMPfam_C2	-	no_errors
CASR	846	genome.wustl.edu	36	3	123486613	123486613	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	123486613	123486613	G	A	SNP	CASR	NM_000388	human	genbank	54_36p	+1	reviewed	missense	c.3122	p.R1041Q	0.000	NULL	superfamily_Periplasmic binding protein-like I,HMMPfam_ANF_receptor,PatternScan_G_PROTEIN_RECEP_F3_1,HMMPfam_NCD3G,PatternScan_G_PROTEIN_RECEP_F3_2,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_3	-	no_errors
MICAL1	64780	genome.wustl.edu	36	6	109876229	109876229	+	Silent	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	109876229	109876229	C	G	SNP	MICAL1	NM_022765	human	genbank	54_36p	-1	validated	silent	c.1725	p.V575	0.977	superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033	superfamily_FAD/NAD(P)-binding domain,HMMPfam_FAD_binding_3,superfamily_Calponin-homology domain CH-domain,HMMPfam_CH,HMMSmart_SM00033,superfamily_Glucocorticoid receptor-like (DNA-binding domain),HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_LIM	-	no_errors
RPS12	6206	genome.wustl.edu	36	6	133180338	133180338	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	133180338	133180338	G	T	SNP	RPS12	NM_001016	human	genbank	54_36p	+1	reviewed	missense	c.363	p.K121N	1.000	superfamily_L30e-like	superfamily_L30e-like,HMMPfam_Ribosomal_L7Ae,PatternScan_RIBOSOMAL_S12E	-	no_errors
KLHL5	51088	genome.wustl.edu	36	4	38759149	38759149	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	4	38759149	38759149	G	A	SNP	KLHL5	NM_015990	human	genbank	54_36p	+1	validated	missense	c.736	p.A246T	1.000	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225	superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00225,HMMPfam_BACK,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_1,HMMSmart_SM00612	-	no_errors
CST6	1474	genome.wustl.edu	36	11	65536882	65536882	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65536882	65536882	G	C	SNP	CST6	NM_001323	human	genbank	54_36p	+1	reviewed	missense	c.250	p.G84R	0.985	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	HMMSmart_CY,HMMPfam_Cystatin,superfamily_SSF54403,PatternScan_CYSTATIN	-	no_errors
PRMT1	3276	genome.wustl.edu	36	19	54883235	54883235	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	54883235	54883235	A	G	SNP	PRMT1	NM_001536	human	genbank	54_36p	+1	validated	missense	c.1037	p.D346G	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	-	no_errors
KIAA1683	80726	genome.wustl.edu	36	19	18238781	18238781	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	18238781	18238781	T	A	SNP	KIAA1683	NM_025249	human	genbank	54_36p	-1	validated	missense	c.569	p.K190M	0.094	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GPR179	440435	genome.wustl.edu	36	17	33739280	33739280	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	33739280	33739280	A	G	SNP	GPR179	NM_001004334	human	genbank	54_36p	-1	validated	missense	c.3698	p.L1233P	0.000	NULL	PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,HMMSmart_EGF,HMMPfam_7tm_3	-	no_errors
C16orf53	79447	genome.wustl.edu	36	16	29738428	29738428	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	29738428	29738428	C	A	SNP	C16orf53	NM_024516	human	genbank	54_36p	+1	validated	nonsense	c.617	p.S206*	1.000	NULL	NULL	-	no_errors
ETV1	2115	genome.wustl.edu	36	7	13945281	13945281	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	13945281	13945281	G	A	SNP	ETV1	ENST00000405358	human	ensembl	54_36p	-1	known	silent	c.393	p.C131	1.000	HMMPfam_ETS_PEA3_N	HMMPfam_ETS_PEA3_N,superfamily_SSF46785,HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2	-	no_errors
C1QA	712	genome.wustl.edu	36	1	22836774	22836774	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	22836774	22836774	C	G	SNP	C1QA	NM_015991	human	genbank	54_36p	+1	reviewed	missense	c.78	p.C26W	0.407	NULL	HMMPfam_Collagen,HMMSmart_SM00110,superfamily_TNF-like,HMMPfam_C1q	-	no_errors
SCTR	6344	genome.wustl.edu	36	2	119920850	119920850	+	Silent	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	119920850	119920850	A	G	SNP	SCTR	NM_002980	human	genbank	54_36p	-1	reviewed	silent	c.1095	p.A365	1.000	superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2	superfamily_Hormone receptor domain (HRM Pfam 02793),HMMSmart_SM00008,HMMPfam_HRM,PatternScan_G_PROTEIN_RECEP_F2_1,superfamily_Family A G protein-coupled receptor-like,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
MYBPC1	4604	genome.wustl.edu	36	12	100580303	100580303	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	100580303	100580303	G	T	SNP	MYBPC1	NM_002465	human	genbank	54_36p	+1	validated	missense	c.2069	p.R690M	1.000	superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	superfamily_Immunoglobulin,HMMPfam_I-set,HMMSmart_SM00409,HMMSmart_SM00408,superfamily_Fibronectin type III,HMMSmart_SM00060,HMMPfam_fn3	-	no_errors
SLC5A5	6528	genome.wustl.edu	36	19	17846331	17846331	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	17846331	17846331	C	T	SNP	SLC5A5	NM_000453	human	genbank	54_36p	+1	validated	missense	c.452	p.A151V	0.992	HMMPfam_SSF	PatternScan_NA_SOLUT_SYMP_2,HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1	-	no_errors
HCN1	348980	genome.wustl.edu	36	5	45297941	45297941	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	45297941	45297941	G	T	SNP	HCN1	NM_021072	human	genbank	54_36p	-1	validated	missense	c.2512	p.R838S	1.000	NULL	PatternScan_CNMP_BINDING_2,HMMPfam_Ion_trans_N,superfamily_SSF81324,HMMPfam_Ion_trans,superfamily_cNMP_binding,HMMSmart_cNMP,HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1	-	no_errors
CCL17	6361	genome.wustl.edu	36	16	56005346	56005346	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	16	56005346	56005346	A	G	SNP	CCL17	NM_002987	human	genbank	54_36p	+1	reviewed	missense	c.1	p.M1V	0.454	NULL	HMMPfam_IL8,superfamily_Interleukin 8-like chemokines,HMMSmart_SM00199,PatternScan_SMALL_CYTOKINES_CC	-	no_errors
SLC39A7	7922	genome.wustl.edu	36	6	33277132	33277132	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	33277132	33277132	C	T	SNP	SLC39A7	NM_001077516	human	genbank	54_36p	+1	validated	silent	c.132	p.G44	0.978	NULL	HMMPfam_Zip	-	no_errors
C14orf148	122945	genome.wustl.edu	36	14	76950042	76950042	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	76950042	76950042	G	A	SNP	C14orf148	NM_138791	human	genbank	54_36p	-1	predicted	missense	c.337	p.P113S	1.000	superfamily_NAD(P)-bd,HMMPfam_F420_oxidored	superfamily_NAD(P)-bd,HMMPfam_F420_oxidored	-	no_errors
OR4B1	119765	genome.wustl.edu	36	11	48195044	48195044	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	48195044	48195044	C	T	SNP	OR4B1	NM_001005470	human	genbank	54_36p	+1	provisional	missense	c.107	p.T36M	0.008	superfamily_SSF81321	PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321,HMMPfam_7tm_1	-	no_errors
CFTR	1080	genome.wustl.edu	36	7	117030150	117030150	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	117030150	117030150	G	T	SNP	CFTR	NM_000492	human	genbank	54_36p	+1	reviewed	missense	c.2654	p.G885V	0.000	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMC3	342125	genome.wustl.edu	36	15	79412381	79412381	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	79412381	79412381	C	T	SNP	TMC3	NM_001080532	human	genbank	54_36p	-1	provisional	missense	c.2737	p.A913T	0.002	NULL	HMMPfam_TMC	-	no_errors
AQP7	364	genome.wustl.edu	36	9	33381522	33381522	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	9	33381522	33381522	C	T	SNP	AQP7	ENST00000379503	human	ensembl	54_36p	-1	known	nonsense	c.8	p.W3*	0.700	NULL	HMMPfam_MIP,superfamily_MIP	-	no_errors
IPO13	9670	genome.wustl.edu	36	1	44188187	44188187	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	44188187	44188187	G	A	SNP	IPO13	NM_014652	human	genbank	54_36p	+1	reviewed	missense	c.596	p.G199E	1.000	superfamily_ARM-type_fold,HMMPfam_Xpo1	superfamily_ARM-type_fold,HMMPfam_IBN_N,HMMPfam_Xpo1	-	no_errors
MAGI1	9223	genome.wustl.edu	36	3	65998967	65998967	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	65998967	65998967	G	T	SNP	MAGI1	NM_001033057	human	genbank	54_36p	-1	reviewed	silent	c.57	p.T19	0.975	superfamily_PDZ domain-like	HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_Guanylate_kin,HMMSmart_SM00072,PatternScan_GUANYLATE_KINASE_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZNF624	57547	genome.wustl.edu	36	17	16466368	16466368	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	16466368	16466368	C	T	SNP	ZNF624	NM_020787	human	genbank	54_36p	-1	validated	missense	c.2557	p.V853I	0.002	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
ZMYND8	23613	genome.wustl.edu	36	20	45274761	45274761	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	45274761	45274761	G	A	SNP	ZMYND8	NM_183047	human	genbank	54_36p	-1	reviewed	silent	c.3363	p.D1121	1.000	NULL	superfamily_FYVE_PHD_ZnF,HMMSmart_PHD,HMMPfam_PHD,PatternScan_ZF_PHD_1,superfamily_Bromodomain,HMMSmart_BROMO,HMMPfam_Bromodomain,superfamily_SSF63748,HMMPfam_PWWP,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1	-	no_errors
C10orf111	221060	genome.wustl.edu	36	10	15178738	15178738	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	10	15178738	15178738	G	A	SNP	C10orf111	NM_153244	human	genbank	54_36p	-1	predicted	missense	c.92	p.A31V	0.000	NULL	NULL	-	no_errors
LOC100130511	100130511	genome.wustl.edu	36	1	178671542	178671542	+	RNA	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	178671542	178671542	C	T	SNP	LOC100130511	XR_038100	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.980	-	-	-	pseudogene
ZNF250	58500	genome.wustl.edu	36	8	146077762	146077762	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	146077762	146077762	C	T	SNP	ZNF250	NM_001109689	human	genbank	54_36p	-1	validated	missense	c.1610	p.R537H	0.013	superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_KRAB,HMMSmart_SM00349,superfamily_C2H2 and C2HC zinc fingers,HMMPfam_zf-C2H2,HMMSmart_SM00355,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
CHD3	1107	genome.wustl.edu	36	17	7746739	7746739	+	Silent	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	7746739	7746739	C	A	SNP	CHD3	NM_001005271	human	genbank	54_36p	+1	reviewed	silent	c.3474	p.A1158	0.947	superfamily_P-loop containing nucleoside triphosphate hydrolases,HMMSmart_SM00490,HMMPfam_Helicase_C	HMMPfam_CHDNT,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_PHD,PatternScan_ZF_PHD_1,HMMSmart_SM00298,superfamily_Chromo domain-like,HMMPfam_Chromo,superfamily_P-loop containing nucleoside triphosphate hydrolases,PatternScan_CHROMO_1,HMMSmart_SM00487,HMMPfam_SNF2_N,PatternScan_DEAH_ATP_HELICASE,HMMSmart_SM00490,HMMPfam_Helicase_C,HMMPfam_DUF1087,HMMPfam_DUF1086,HMMPfam_CHDCT2	-	no_errors
OSBPL8	114882	genome.wustl.edu	36	12	75296407	75296407	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	75296407	75296407	C	A	SNP	OSBPL8	NM_020841	human	genbank	54_36p	-1	reviewed	missense	c.1685	p.R562I	1.000	HMMPfam_Oxysterol_BP	superfamily_PH domain-like,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Oxysterol_BP,PatternScan_OSBP	-	no_errors
LRRFIP1	9208	genome.wustl.edu	36	2	238307188	238307188	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	238307188	238307188	G	T	SNP	LRRFIP1	ENST00000308482	human	ensembl	54_36p	+1	known	silent	c.477	p.S159	0.012	HMMPfam_DUF2051	HMMPfam_DUF2051	-	no_errors
BACE1	23621	genome.wustl.edu	36	11	116671259	116671259	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	116671259	116671259	C	T	SNP	BACE1	NM_012104	human	genbank	54_36p	-1	reviewed	missense	c.365	p.R122Q	1.000	superfamily_Acid proteases,HMMPfam_Asp	superfamily_Acid proteases,HMMPfam_Asp,PatternScan_ASP_PROTEASE	-	no_errors
LENG1	79165	genome.wustl.edu	36	19	59353923	59353923	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	59353923	59353923	C	T	SNP	LENG1	NM_024316	human	genbank	54_36p	-1	provisional	missense	c.221	p.G74D	0.998	NULL	NULL	-	no_errors
ITIH5L	347365	genome.wustl.edu	36	X	54834097	54834097	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	54834097	54834097	T	C	SNP	ITIH5L	NM_198510	human	genbank	54_36p	-1	provisional	missense	c.514	p.K172E	0.695	NULL	HMMSmart_VIT,HMMPfam_VIT,superfamily_SSF53300,HMMSmart_VWA,HMMPfam_VWA,HMMPfam_ITI_HC_C	-	no_errors
GML	2765	genome.wustl.edu	36	8	143918902	143918902	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	8	143918902	143918902	C	T	SNP	GML	NM_002066	human	genbank	54_36p	+1	validated	missense	c.47	p.A16V	0.000	NULL	superfamily_SSF57302,HMMSmart_LU,PatternScan_LY6_UPAR	-	no_errors
PSD2	84249	genome.wustl.edu	36	5	139177321	139177321	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	139177321	139177321	G	A	SNP	PSD2	NM_032289	human	genbank	54_36p	+1	provisional	missense	c.1088	p.G363E	1.000	HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain	HMMSmart_SM00222,HMMPfam_Sec7,superfamily_Sec7 domain,HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
TMEM146	257062	genome.wustl.edu	36	19	5729602	5729602	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	5729602	5729602	A	G	SNP	TMEM146	NM_152784	human	genbank	54_36p	+1	validated	missense	c.2312	p.Q771R	0.000	NULL	NULL	-	no_errors
CXCR2P1	3580	genome.wustl.edu	36	2	218633448	218633448	+	RNA	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	218633448	218633448	G	A	SNP	IL8RBP	NR_002712	human	genbank	54_36p	-1	provisional	rna	NULL	NULL	0.969	-	-	-	pseudogene
HRNR	388697	genome.wustl.edu	36	1	150455134	150455134	+	Silent	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	150455134	150455134	T	A	SNP	HRNR	NM_001009931	human	genbank	54_36p	-1	validated	silent	c.5595	p.S1865	0.077	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
HMBS	3145	genome.wustl.edu	36	11	118464225	118464225	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	118464225	118464225	C	G	SNP	HMBS	NM_000190	human	genbank	54_36p	+1	reviewed	missense	c.84	p.S28R	1.000	superfamily_Periplasmic binding protein-like II,HMMPfam_Porphobil_deam	superfamily_Periplasmic binding protein-like II,HMMPfam_Porphobil_deam,superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain,HMMPfam_Porphobil_deamC,PatternScan_PORPHOBILINOGEN_DEAM	-	no_errors
HNRNPH1	3187	genome.wustl.edu	36	5	178976529	178976529	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	5	178976529	178976529	G	A	SNP	HNRNPH1	NM_005520	human	genbank	54_36p	-1	reviewed	missense	c.1154	p.A385V	1.000	NULL	HMMSmart_SM00360,superfamily_RNA-binding domain RBD,HMMPfam_RRM_1,HMMPfam_zf-RNPHF	-	no_errors
ZNF687	57592	genome.wustl.edu	36	1	149527051	149527051	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	149527051	149527051	C	T	SNP	ZNF687	NM_020832	human	genbank	54_36p	+1	provisional	missense	c.1660	p.R554C	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
CYP19A1	1588	genome.wustl.edu	36	15	49290440	49290440	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	49290440	49290440	G	A	SNP	CYP19A1	NM_000103	human	genbank	54_36p	-1	reviewed	nonsense	c.1369	p.R457*	0.988	superfamily_Cytochrome_P450,HMMPfam_p450	superfamily_Cytochrome_P450,HMMPfam_p450,PatternScan_CYTOCHROME_P450	-	no_errors
CSTF2	1478	genome.wustl.edu	36	X	99979045	99979045	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	99979045	99979045	G	A	SNP	CSTF2	NM_001325	human	genbank	54_36p	+1	reviewed	missense	c.1562	p.G521D	1.000	NULL	superfamily_RNA-binding domain RBD,HMMSmart_SM00360,HMMPfam_RRM_1	-	no_errors
PCBP4	57060	genome.wustl.edu	36	3	51967936	51967936	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	51967936	51967936	C	G	SNP	PCBP4	NM_020418	human	genbank	54_36p	-1	reviewed	missense	c.896	p.G299A	1.000	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	superfamily_SSF54791,HMMSmart_KH,HMMPfam_KH_1	-	no_errors
OPHN1	4983	genome.wustl.edu	36	X	67248513	67248513	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	67248513	67248513	C	T	SNP	OPHN1	NM_002547	human	genbank	54_36p	-1	reviewed	silent	c.1434	p.L478	1.000	superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	superfamily_SSF50729,HMMPfam_PH,HMMSmart_PH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP	-	no_errors
VARS2	57176	genome.wustl.edu	36	6	30998300	30998300	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	30998300	30998300	T	A	SNP	VARS2	NM_020442	human	genbank	54_36p	+1	provisional	missense	c.2027	p.V676E	0.455	HMMPfam_tRNA-synt_1,superfamily_Nucleotidylyl transferase	PatternScan_AA_TRNA_LIGASE_I,HMMPfam_tRNA-synt_1,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,superfamily_Nucleotidylyl transferase	-	no_errors
CLK3	1198	genome.wustl.edu	36	15	72707047	72707047	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	72707047	72707047	C	T	SNP	CLK3	NM_003992	human	genbank	54_36p	+1	reviewed	missense	c.1027	p.P343S	1.000	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase	superfamily_Kinase_like,HMMSmart_S_TKc,HMMPfam_Pkinase,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_ST	-	no_errors
SPATA20	64847	genome.wustl.edu	36	17	45982895	45982895	+	Splice_Site	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	45982895	45982895	G	A	SNP	SPATA20	NM_022827	human	genbank	54_36p	+1	provisional	splice_site	c.1099-1	e10-1	1.000	-	-	-	no_errors
ANKRD27	84079	genome.wustl.edu	36	19	37811543	37811543	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	37811543	37811543	T	C	SNP	ANKRD27	NM_032139	human	genbank	54_36p	-1	validated	missense	c.1262	p.D421G	0.999	superfamily_ANK	superfamily_SSF109993,HMMSmart_VPS9,HMMPfam_VPS9,superfamily_ANK,HMMSmart_ANK,HMMPfam_Ank	-	no_errors
MST1R	4486	genome.wustl.edu	36	3	49908991	49908991	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	49908991	49908991	C	T	SNP	MST1R	NM_002447	human	genbank	54_36p	-1	validated	missense	c.2425	p.A809T	0.000	HMMSmart_SM00429,HMMPfam_TIG,superfamily_E set domains	superfamily_Sema domain,HMMSmart_SM00630,HMMPfam_Sema,superfamily_Plexin repeat,HMMPfam_PSI,HMMSmart_SM00423,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ATP,PatternScan_PROTEIN_KINASE_TYR	-	no_errors
ERCC1	2067	genome.wustl.edu	36	19	50611920	50611920	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	50611920	50611920	T	A	SNP	ERCC1	NM_202001	human	genbank	54_36p	-1	validated	missense	c.601	p.S201C	1.000	superfamily_RuvA_2_like	HMMPfam_Rad10,superfamily_RuvA_2_like	-	no_errors
TIAF1	9220	genome.wustl.edu	36	17	24425334	24425334	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	24425334	24425334	G	T	SNP	TIAF1	NM_004740	human	genbank	54_36p	-1	validated	missense	c.10	p.P4T	0.095	NULL	NULL	-	no_errors
PIK3C2B	5287	genome.wustl.edu	36	1	202702592	202702592	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	202702592	202702592	G	A	SNP	PIK3C2B	ENST00000367184	human	ensembl	54_36p	-1	known	missense	c.197	p.A66V	0.999	NULL	superfamily_SSF54236,HMMPfam_PI3K_rbd	-	no_stop_codon
GPD2	2820	genome.wustl.edu	36	2	157040886	157040886	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	157040886	157040886	A	G	SNP	GPD2	NM_000408	human	genbank	54_36p	+1	validated	missense	c.23	p.K8R	1.000	NULL	superfamily_FAD/NAD(P)-binding domain,HMMPfam_DAO,PatternScan_FAD_G3PDH_1,superfamily_FAD-linked reductases C-terminal domain,PatternScan_FAD_G3PDH_2,superfamily_EF-hand,HMMSmart_SM00054,HMMPfam_efhand,PatternScan_EF_HAND_1	-	no_errors
GJC1	10052	genome.wustl.edu	36	17	40238434	40238434	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	40238434	40238434	C	T	SNP	GJC1	NM_001080383	human	genbank	54_36p	-1	reviewed	missense	c.278	p.G93D	1.000	HMMPfam_Connexin	HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,HMMPfam_Connexin_CCC,PatternScan_CONNEXINS_2	-	no_errors
CUL9	23113	genome.wustl.edu	36	6	43271931	43271931	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	43271931	43271931	C	T	SNP	CUL9	NM_015089	human	genbank	54_36p	+1	validated	silent	c.2535	p.S845	0.964	superfamily_ARM repeat	"superfamily_ARM repeat,superfamily_Galactose-binding domain-like,HMMPfam_APC10,PatternScan_CYTOCHROME_P450,HMMPfam_Cullin,superfamily_Cullin homology domain,superfamily_""Winged helix"" DNA-binding domain,PatternScan_CULLIN_1,superfamily_RING/U-box,HMMPfam_IBR,HMMSmart_SM00647,PatternScan_ZF_RING_1"	-	no_errors
DAAM1	23002	genome.wustl.edu	36	14	58867767	58867767	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	58867767	58867767	C	A	SNP	DAAM1	NM_014992	human	genbank	54_36p	+1	reviewed	missense	c.1648	p.P550T	0.241	NULL	HMMPfam_Drf_GBD,HMMPfam_Drf_FH3,superfamily_Formin homology 2 domain (FH2 domain),HMMSmart_SM00498,HMMPfam_FH2	-	no_errors
KY	339855	genome.wustl.edu	36	3	135805925	135805925	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	135805925	135805925	C	A	SNP	KY	NM_178554	human	genbank	54_36p	-1	validated	missense	c.1172	p.G391V	1.000	NULL	superfamily_Cysteine proteinases,HMMPfam_Transglut_core,HMMSmart_SM00460	-	no_errors
AP1M2	10053	genome.wustl.edu	36	19	10546607	10546607	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	10546607	10546607	G	T	SNP	AP1M2	NM_005498	human	genbank	54_36p	-1	reviewed	silent	c.1146	p.I382	0.998	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
ABHD2	11057	genome.wustl.edu	36	15	87539476	87539476	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	15	87539476	87539476	G	A	SNP	ABHD2	NM_007011	human	genbank	54_36p	+1	reviewed	missense	c.1096	p.V366I	1.000	superfamily_SSF53474,HMMPfam_Abhydrolase_1	superfamily_SSF53474,HMMPfam_Abhydrolase_1,PatternScan_UPF0017	-	no_errors
AMELX	265	genome.wustl.edu	36	X	11226673	11226673	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	11226673	11226673	C	T	SNP	AMELX	NM_182680	human	genbank	54_36p	+1	reviewed	missense	c.271	p.H91Y	0.997	HMMPfam_Amelogenin,HMMSmart_SM00818	HMMPfam_Amelogenin,HMMSmart_SM00818	-	no_errors
PLXND1	23129	genome.wustl.edu	36	3	130785927	130785927	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	3	130785927	130785927	G	T	SNP	PLXND1	NM_015103	human	genbank	54_36p	-1	validated	missense	c.2020	p.P674T	0.544	NULL	superfamily_Sema domain,HMMPfam_Sema,HMMSmart_SM00630,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat,superfamily_E set domains,HMMSmart_SM00429,HMMPfam_TIG,HMMPfam_Plexin_cytopl,superfamily_GTPase activation domain GAP	-	no_errors
TBX4	9496	genome.wustl.edu	36	17	56915383	56915383	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	17	56915383	56915383	G	A	SNP	TBX4	NM_018488	human	genbank	54_36p	+1	reviewed	silent	c.1362	p.R454	1.000	NULL	superfamily_P53_like_DNA_bnd,HMMSmart_TBOX,HMMPfam_T-box,PatternScan_TBOX_1,PatternScan_TBOX_2	-	no_errors
NES	10763	genome.wustl.edu	36	1	154907008	154907008	+	Missense_Mutation	SNP	G	G	T	rs78303930	byCluster;by1000genomes	TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	154907008	154907008	G	T	SNP	NES	NM_006617	human	genbank	54_36p	-1	reviewed	missense	c.3596	p.A1199D	0.056	NULL	HMMPfam_Filament,PatternScan_IF	-	no_errors
COL4A6	1288	genome.wustl.edu	36	X	107287129	107287129	+	Silent	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	107287129	107287129	G	T	SNP	COL4A6	NM_001847	human	genbank	54_36p	-1	reviewed	silent	c.4833	p.A1611	0.626	superfamily_C-type lectin-like,HMMPfam_C4,HMMSmart_SM00111	HMMPfam_Collagen,HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	-	no_errors
TPCN1	53373	genome.wustl.edu	36	12	112188515	112188515	+	Missense_Mutation	SNP	G	G	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	112188515	112188515	G	T	SNP	TPCN1	NM_017901	human	genbank	54_36p	+1	validated	missense	c.385	p.A129S	0.997	NULL	superfamily_Voltage-gated potassium channels,HMMPfam_Ion_trans,PatternScan_LECTIN_LEGUME_BETA	-	no_errors
KRT18P33	647162	genome.wustl.edu	36	2	65747489	65747489	+	RNA	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	2	65747489	65747489	T	C	SNP	KRT18P33	XR_017456	human	genbank	54_36p	+1	model	rna	NULL	NULL	0.993	-	-	-	pseudogene
ZKSCAN1	7586	genome.wustl.edu	36	7	99469198	99469198	+	Silent	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	7	99469198	99469198	A	G	SNP	ZKSCAN1	NM_003439	human	genbank	54_36p	+1	validated	silent	c.1134	p.R378	0.008	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
WIZ	58525	genome.wustl.edu	36	19	15398859	15398859	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	15398859	15398859	C	A	SNP	WIZ	NM_021241	human	genbank	54_36p	-1	validated	missense	c.1015	p.G339W	0.990	NULL	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,PatternScan_ZINC_FINGER_C2H2_1	-	no_errors
RBM11	54033	genome.wustl.edu	36	21	14521382	14521382	+	Missense_Mutation	SNP	A	A	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	21	14521382	14521382	A	T	SNP	RBM11	NM_144770	human	genbank	54_36p	+1	validated	missense	c.401	p.K134M	1.000	NULL	NULL	-	no_errors
WNT11	7481	genome.wustl.edu	36	11	75585183	75585183	+	Missense_Mutation	SNP	A	A	G			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	A	A			A	A	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	75585183	75585183	A	G	SNP	WNT11	NM_004626	human	genbank	54_36p	-1	reviewed	missense	c.311	p.L104P	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
NDRG2	57447	genome.wustl.edu	36	14	20557641	20557641	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	20557641	20557641	T	A	SNP	NDRG2	NM_201535	human	genbank	54_36p	-1	reviewed	missense	c.713	p.N238I	1.000	superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr	superfamily_alpha/beta-Hydrolases,HMMPfam_Ndr	-	no_errors
ANGPTL4	51129	genome.wustl.edu	36	19	8344719	8344719	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	19	8344719	8344719	G	A	SNP	ANGPTL4	NM_139314	human	genbank	54_36p	+1	reviewed	silent	c.1170	p.L390	1.000	superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C	superfamily_Fibrinogen_a/b/g_C,HMMSmart_FBG,HMMPfam_Fibrinogen_C,PatternScan_FIBRIN_AG_C_DOMAIN	-	no_errors
RAB15	376267	genome.wustl.edu	36	14	64485200	64485200	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	14	64485200	64485200	G	A	SNP	RAB15	NM_198686	human	genbank	54_36p	-1	validated	nonsense	c.550	p.R184*	0.999	NULL	superfamily_SSF52540,HMMSmart_RAB,HMMPfam_Ras,PatternScan_SIGMA54_INTERACT_1	-	no_errors
C1QTNF4	114900	genome.wustl.edu	36	11	47568207	47568207	+	Silent	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	47568207	47568207	C	T	SNP	C1QTNF4	NM_031909	human	genbank	54_36p	-1	validated	silent	c.732	p.S244	1.000	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	HMMSmart_C1Q,superfamily_TNF_like,HMMPfam_C1q	-	no_errors
SMAD7	4092	genome.wustl.edu	36	18	44702017	44702017	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	18	44702017	44702017	C	T	SNP	SMAD7	NM_005904	human	genbank	54_36p	-1	provisional	missense	c.1004	p.R335H	1.000	superfamily_SMAD_FHA,HMMPfam_MH2,HMMSmart_DWB	superfamily_MAD_MH1,HMMSmart_DWA,HMMPfam_MH1,superfamily_SMAD_FHA,HMMPfam_MH2,HMMSmart_DWB	-	no_errors
KDM1A	23028	genome.wustl.edu	36	1	23255011	23255011	+	Splice_Site	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	23255011	23255011	G	A	SNP	AOF2	NM_015013	human	genbank	54_36p	+1	reviewed	splice_site	c.824-1	e6-1	1.000	-	-	-	no_errors
ARHGAP4	393	genome.wustl.edu	36	X	152837881	152837881	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	X	152837881	152837881	G	A	SNP	ARHGAP4	NM_001666	human	genbank	54_36p	-1	validated	silent	c.732	p.N244	0.988	NULL	HMMPfam_FCH,HMMSmart_FCH,superfamily_Rho_GAP,HMMSmart_RhoGAP,HMMPfam_RhoGAP,superfamily_SH3,HMMPfam_SH3_1,HMMSmart_SH3	-	no_errors
ANKS1B	56899	genome.wustl.edu	36	12	98072357	98072357	+	Silent	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	98072357	98072357	G	A	SNP	ANKS1B	NM_181670	human	genbank	54_36p	-1	validated	silent	c.45	p.Y15	1.000	NULL	superfamily_SAM_homology,HMMSmart_SAM,HMMPfam_SAM_1,superfamily_SSF50729,HMMSmart_PTB,HMMPfam_PID	-	no_errors
DYNLRB1	83658	genome.wustl.edu	36	20	32586156	32586156	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	20	32586156	32586156	G	A	SNP	DYNLRB1	NM_014183	human	genbank	54_36p	+1	reviewed	missense	c.143	p.S48N	1.000	HMMPfam_Robl_LC7	HMMPfam_Robl_LC7	-	no_errors
MALAT1	378938	genome.wustl.edu	36	11	65030253	65030253	+	RNA	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	11	65030253	65030253	C	A	SNP	MALAT1	NR_002819	human	genbank	54_36p	+1	provisional	rna	NULL	NULL	0.015	-	-	-	no_errors
HSPG2	3339	genome.wustl.edu	36	1	22089061	22089061	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	22089061	22089061	C	A	SNP	HSPG2	NM_005529	human	genbank	54_36p	-1	validated	missense	c.574	p.V192L	1.000	HMMSmart_SM00200	HMMPfam_Laminin_B,HMMPfam_SEA,HMMSmart_SM00200,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMSmart_SM00281,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
KDM2B	84678	genome.wustl.edu	36	12	120364769	120364769	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	T	T			T	T	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	12	120364769	120364769	T	C	SNP	FBXL10	NM_032590	human	genbank	54_36p	-1	reviewed	missense	c.2858	p.E953G	1.000	NULL	superfamily_Clavaminate synthase-like,HMMSmart_SM00558,HMMPfam_JmjC,HMMPfam_zf-CXXC,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00249,HMMPfam_F-box,superfamily_RNI-like,HMMSmart_SM00367	-	no_errors
PTPN14	5784	genome.wustl.edu	36	1	212609533	212609533	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	G	G			G	G	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	1	212609533	212609533	G	A	SNP	PTPN14	NM_005401	human	genbank	54_36p	-1	reviewed	missense	c.3161	p.T1054M	1.000	superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase	HMMSmart_B41,superfamily_SSF54236,HMMPfam_FERM_N,PatternScan_FERM_1,superfamily_FERM_3-hlx,HMMPfam_FERM_M,PatternScan_FERM_2,superfamily_SSF50729,superfamily_SSF52799,HMMSmart_PTPc,HMMPfam_Y_phosphatase,PatternScan_TYR_PHOSPHATASE_1	-	no_errors
NCOA7	135112	genome.wustl.edu	36	6	126290586	126290586	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2806-03B-01W-0728-08	TCGA-AB-2806-11B-01W-0728-08	C	C			C	C	Unknown	Unknown	Somatic		Capture				Illumina GAIIx	6	126290586	126290586	C	A	SNP	NCOA7	NM_181782	human	genbank	54_36p	+1	validated	missense	c.2608	p.P870T	1.000	HMMPfam_TLD,HMMSmart_SM00584	HMMSmart_SM00257,HMMPfam_GRAM,HMMPfam_TLD,HMMSmart_SM00584,HMMPfam_LysM,superfamily_LysM domain	-	no_errors
